Multiple sequence alignment - TraesCS1D01G143500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G143500 chr1D 100.000 2975 0 0 1 2975 199074839 199071865 0.000000e+00 5494
1 TraesCS1D01G143500 chr1D 82.527 372 37 15 2619 2975 119297138 119296780 4.820000e-78 302
2 TraesCS1D01G143500 chr1D 79.255 376 51 16 2617 2974 11975503 11975869 1.380000e-58 237
3 TraesCS1D01G143500 chr1D 82.988 241 26 7 2748 2975 74337152 74337390 1.400000e-48 204
4 TraesCS1D01G143500 chr1A 89.905 2516 114 25 522 2975 250203278 250200841 0.000000e+00 3110
5 TraesCS1D01G143500 chr1A 76.712 365 44 21 2619 2975 143811850 143811519 6.600000e-37 165
6 TraesCS1D01G143500 chr1B 91.458 1955 96 18 522 2455 279193647 279191743 0.000000e+00 2619
7 TraesCS1D01G143500 chr1B 87.384 539 44 10 2452 2975 279191476 279190947 5.490000e-167 597
8 TraesCS1D01G143500 chr1B 81.215 362 42 14 2628 2974 296322893 296323243 4.890000e-68 268
9 TraesCS1D01G143500 chr1B 81.250 352 40 11 2619 2955 181301258 181300918 8.180000e-66 261
10 TraesCS1D01G143500 chr1B 85.417 144 17 3 2477 2618 46688970 46689111 2.390000e-31 147
11 TraesCS1D01G143500 chr5D 89.538 411 37 6 116 522 7751776 7752184 1.580000e-142 516
12 TraesCS1D01G143500 chr5D 88.333 420 41 7 116 529 54690543 54690960 5.730000e-137 497
13 TraesCS1D01G143500 chr5D 82.842 373 37 12 2619 2975 365079519 365079880 2.880000e-80 309
14 TraesCS1D01G143500 chr5D 82.933 375 32 14 2619 2974 527145806 527145445 2.880000e-80 309
15 TraesCS1D01G143500 chr5D 77.867 375 50 18 2622 2975 237600384 237600746 5.030000e-48 202
16 TraesCS1D01G143500 chr4A 89.320 412 39 4 116 522 622509546 622509957 2.050000e-141 512
17 TraesCS1D01G143500 chr4A 89.242 409 40 3 118 522 622558114 622558522 2.650000e-140 508
18 TraesCS1D01G143500 chr4A 89.078 412 40 4 116 522 622440479 622440890 9.520000e-140 507
19 TraesCS1D01G143500 chr4A 89.078 412 40 4 116 522 622475350 622475761 9.520000e-140 507
20 TraesCS1D01G143500 chr4A 79.947 374 40 17 2619 2969 591250497 591250136 2.960000e-60 243
21 TraesCS1D01G143500 chr3D 89.320 412 37 7 115 522 508201810 508202218 7.360000e-141 510
22 TraesCS1D01G143500 chr3D 79.830 352 40 18 2476 2818 474993033 474992704 8.300000e-56 228
23 TraesCS1D01G143500 chr6A 88.808 411 41 4 117 522 566444308 566444718 1.590000e-137 499
24 TraesCS1D01G143500 chr6A 80.635 315 42 10 2672 2975 220768325 220768631 2.980000e-55 226
25 TraesCS1D01G143500 chr6A 78.667 375 49 12 2612 2967 2938787 2938425 1.390000e-53 220
26 TraesCS1D01G143500 chr6D 88.333 420 41 6 116 530 464852281 464851865 5.730000e-137 497
27 TraesCS1D01G143500 chr6D 80.863 371 47 11 2621 2975 161379684 161380046 1.360000e-68 270
28 TraesCS1D01G143500 chr6D 79.679 374 47 14 2619 2975 454014111 454014472 2.960000e-60 243
29 TraesCS1D01G143500 chr2D 85.124 363 34 9 2622 2975 6967304 6966953 1.310000e-93 353
30 TraesCS1D01G143500 chr2D 83.424 368 37 11 2622 2975 106969031 106968674 1.330000e-83 320
31 TraesCS1D01G143500 chr5B 82.620 374 39 11 2617 2975 55368967 55368605 1.040000e-79 307
32 TraesCS1D01G143500 chr4D 77.282 515 69 28 2482 2975 40118725 40118238 2.940000e-65 259
33 TraesCS1D01G143500 chr4D 85.333 150 18 4 2477 2623 507787828 507787680 5.140000e-33 152
34 TraesCS1D01G143500 chrUn 80.000 375 45 12 2619 2975 29855745 29856107 1.770000e-62 250
35 TraesCS1D01G143500 chr3B 79.947 374 47 14 2619 2975 811100738 811101100 1.770000e-62 250
36 TraesCS1D01G143500 chr3B 78.453 362 43 12 2620 2975 726749608 726749276 1.400000e-48 204
37 TraesCS1D01G143500 chr4B 78.406 389 37 11 2619 2974 386196510 386196884 3.000000e-50 209
38 TraesCS1D01G143500 chr3A 86.154 195 22 5 2476 2667 653328867 653329059 3.890000e-49 206
39 TraesCS1D01G143500 chr3A 85.333 150 18 4 2477 2623 584952716 584952568 5.140000e-33 152
40 TraesCS1D01G143500 chr6B 87.943 141 15 2 2478 2616 239739703 239739563 6.600000e-37 165
41 TraesCS1D01G143500 chr6B 85.417 144 14 6 2476 2615 690025960 690026100 3.090000e-30 143
42 TraesCS1D01G143500 chr5A 85.915 142 18 2 2477 2616 608198961 608199102 1.850000e-32 150


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G143500 chr1D 199071865 199074839 2974 True 5494 5494 100.000 1 2975 1 chr1D.!!$R2 2974
1 TraesCS1D01G143500 chr1A 250200841 250203278 2437 True 3110 3110 89.905 522 2975 1 chr1A.!!$R2 2453
2 TraesCS1D01G143500 chr1B 279190947 279193647 2700 True 1608 2619 89.421 522 2975 2 chr1B.!!$R2 2453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.036388 AGGCTCGCTCCGAAATTCAA 60.036 50.0 0.0 0.0 34.74 2.69 F
254 255 0.375106 GGCTCGCTCCGAAATTCAAG 59.625 55.0 0.0 0.0 34.74 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1082 1127 0.979709 CTGCTCCATCTCCTCCACCA 60.980 60.000 0.0 0.0 0.0 4.17 R
1985 2030 1.202879 TCTCCAAACGGCAGAAACCAT 60.203 47.619 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.760580 GCTCTAGGCTGGTGATGTAAT 57.239 47.619 3.98 0.00 38.06 1.89
21 22 4.078639 GCTCTAGGCTGGTGATGTAATT 57.921 45.455 3.98 0.00 38.06 1.40
22 23 4.455606 GCTCTAGGCTGGTGATGTAATTT 58.544 43.478 3.98 0.00 38.06 1.82
23 24 4.884164 GCTCTAGGCTGGTGATGTAATTTT 59.116 41.667 3.98 0.00 38.06 1.82
24 25 5.358160 GCTCTAGGCTGGTGATGTAATTTTT 59.642 40.000 3.98 0.00 38.06 1.94
57 58 9.453325 TTTATTTGCAGAGGTAAGTTTAAAACG 57.547 29.630 0.00 0.00 36.23 3.60
58 59 6.439675 TTTGCAGAGGTAAGTTTAAAACGT 57.560 33.333 0.00 0.00 36.23 3.99
59 60 6.439675 TTGCAGAGGTAAGTTTAAAACGTT 57.560 33.333 0.00 0.00 36.23 3.99
60 61 5.812652 TGCAGAGGTAAGTTTAAAACGTTG 58.187 37.500 0.00 0.00 36.23 4.10
61 62 4.673761 GCAGAGGTAAGTTTAAAACGTTGC 59.326 41.667 0.00 0.00 36.23 4.17
62 63 5.731126 GCAGAGGTAAGTTTAAAACGTTGCA 60.731 40.000 0.00 0.00 36.23 4.08
63 64 5.907391 CAGAGGTAAGTTTAAAACGTTGCAG 59.093 40.000 0.00 0.00 36.23 4.41
64 65 5.587443 AGAGGTAAGTTTAAAACGTTGCAGT 59.413 36.000 0.00 0.00 36.23 4.40
65 66 6.762661 AGAGGTAAGTTTAAAACGTTGCAGTA 59.237 34.615 0.00 0.00 36.23 2.74
66 67 6.951643 AGGTAAGTTTAAAACGTTGCAGTAG 58.048 36.000 0.00 0.00 36.23 2.57
67 68 6.017687 AGGTAAGTTTAAAACGTTGCAGTAGG 60.018 38.462 0.00 0.00 36.23 3.18
68 69 6.018016 GGTAAGTTTAAAACGTTGCAGTAGGA 60.018 38.462 0.00 0.00 36.23 2.94
69 70 6.628919 AAGTTTAAAACGTTGCAGTAGGAT 57.371 33.333 0.00 0.00 36.23 3.24
70 71 6.628919 AGTTTAAAACGTTGCAGTAGGATT 57.371 33.333 0.00 0.00 36.23 3.01
71 72 7.034685 AGTTTAAAACGTTGCAGTAGGATTT 57.965 32.000 0.00 0.00 36.23 2.17
72 73 7.485810 AGTTTAAAACGTTGCAGTAGGATTTT 58.514 30.769 0.00 0.00 36.23 1.82
73 74 7.977293 AGTTTAAAACGTTGCAGTAGGATTTTT 59.023 29.630 0.00 0.00 36.23 1.94
101 102 9.628746 TTTCCTACTGTTTTCTTGTTAACAAAC 57.371 29.630 20.89 16.07 34.17 2.93
102 103 8.338072 TCCTACTGTTTTCTTGTTAACAAACA 57.662 30.769 20.89 19.25 36.91 2.83
103 104 8.794553 TCCTACTGTTTTCTTGTTAACAAACAA 58.205 29.630 20.89 13.79 38.36 2.83
104 105 9.413048 CCTACTGTTTTCTTGTTAACAAACAAA 57.587 29.630 20.89 18.09 41.55 2.83
109 110 9.922305 TGTTTTCTTGTTAACAAACAAAAAGTG 57.078 25.926 25.28 12.79 41.55 3.16
113 114 9.482627 TTCTTGTTAACAAACAAAAAGTGATGT 57.517 25.926 20.89 0.00 41.55 3.06
114 115 9.482627 TCTTGTTAACAAACAAAAAGTGATGTT 57.517 25.926 20.89 0.00 41.55 2.71
115 116 9.527566 CTTGTTAACAAACAAAAAGTGATGTTG 57.472 29.630 20.89 0.89 41.55 3.33
116 117 8.818141 TGTTAACAAACAAAAAGTGATGTTGA 57.182 26.923 5.64 0.00 39.57 3.18
117 118 8.920665 TGTTAACAAACAAAAAGTGATGTTGAG 58.079 29.630 5.64 0.00 39.57 3.02
118 119 8.921670 GTTAACAAACAAAAAGTGATGTTGAGT 58.078 29.630 0.00 0.00 39.57 3.41
120 121 8.687824 AACAAACAAAAAGTGATGTTGAGTAG 57.312 30.769 0.00 0.00 39.57 2.57
121 122 7.257722 ACAAACAAAAAGTGATGTTGAGTAGG 58.742 34.615 0.00 0.00 39.57 3.18
122 123 6.391227 AACAAAAAGTGATGTTGAGTAGGG 57.609 37.500 0.00 0.00 38.29 3.53
123 124 4.278419 ACAAAAAGTGATGTTGAGTAGGGC 59.722 41.667 0.00 0.00 0.00 5.19
124 125 2.386661 AAGTGATGTTGAGTAGGGCG 57.613 50.000 0.00 0.00 0.00 6.13
125 126 1.267121 AGTGATGTTGAGTAGGGCGT 58.733 50.000 0.00 0.00 0.00 5.68
126 127 1.623811 AGTGATGTTGAGTAGGGCGTT 59.376 47.619 0.00 0.00 0.00 4.84
127 128 2.038557 AGTGATGTTGAGTAGGGCGTTT 59.961 45.455 0.00 0.00 0.00 3.60
128 129 2.415512 GTGATGTTGAGTAGGGCGTTTC 59.584 50.000 0.00 0.00 0.00 2.78
129 130 1.659098 GATGTTGAGTAGGGCGTTTCG 59.341 52.381 0.00 0.00 0.00 3.46
130 131 0.320073 TGTTGAGTAGGGCGTTTCGG 60.320 55.000 0.00 0.00 0.00 4.30
131 132 0.320160 GTTGAGTAGGGCGTTTCGGT 60.320 55.000 0.00 0.00 0.00 4.69
132 133 0.320073 TTGAGTAGGGCGTTTCGGTG 60.320 55.000 0.00 0.00 0.00 4.94
133 134 2.047560 AGTAGGGCGTTTCGGTGC 60.048 61.111 0.00 0.00 0.00 5.01
139 140 3.497031 GCGTTTCGGTGCCTAGGC 61.497 66.667 27.71 27.71 42.35 3.93
140 141 2.264794 CGTTTCGGTGCCTAGGCT 59.735 61.111 33.07 0.00 42.51 4.58
141 142 1.810030 CGTTTCGGTGCCTAGGCTC 60.810 63.158 33.07 28.77 42.51 4.70
142 143 1.295423 GTTTCGGTGCCTAGGCTCA 59.705 57.895 33.07 12.84 42.51 4.26
143 144 0.107654 GTTTCGGTGCCTAGGCTCAT 60.108 55.000 33.07 0.00 42.51 2.90
144 145 0.178068 TTTCGGTGCCTAGGCTCATC 59.822 55.000 33.07 19.66 42.51 2.92
145 146 0.687757 TTCGGTGCCTAGGCTCATCT 60.688 55.000 33.07 0.00 42.51 2.90
146 147 1.068753 CGGTGCCTAGGCTCATCTG 59.931 63.158 33.07 20.42 42.51 2.90
147 148 1.227793 GGTGCCTAGGCTCATCTGC 60.228 63.158 33.07 13.49 42.51 4.26
148 149 1.524002 GTGCCTAGGCTCATCTGCA 59.476 57.895 33.07 8.77 42.51 4.41
149 150 0.813210 GTGCCTAGGCTCATCTGCAC 60.813 60.000 33.07 17.16 41.75 4.57
150 151 1.227793 GCCTAGGCTCATCTGCACC 60.228 63.158 27.17 0.00 38.26 5.01
151 152 1.449353 CCTAGGCTCATCTGCACCC 59.551 63.158 0.00 0.00 34.04 4.61
152 153 1.068753 CTAGGCTCATCTGCACCCG 59.931 63.158 0.00 0.00 34.04 5.28
153 154 2.374830 CTAGGCTCATCTGCACCCGG 62.375 65.000 0.00 0.00 34.04 5.73
154 155 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
155 156 2.045926 GCTCATCTGCACCCGGTT 60.046 61.111 0.00 0.00 0.00 4.44
156 157 1.220749 GCTCATCTGCACCCGGTTA 59.779 57.895 0.00 0.00 0.00 2.85
157 158 0.811616 GCTCATCTGCACCCGGTTAG 60.812 60.000 0.00 0.00 0.00 2.34
158 159 0.824109 CTCATCTGCACCCGGTTAGA 59.176 55.000 0.00 4.22 0.00 2.10
159 160 1.207089 CTCATCTGCACCCGGTTAGAA 59.793 52.381 0.00 0.00 0.00 2.10
160 161 1.626321 TCATCTGCACCCGGTTAGAAA 59.374 47.619 0.00 0.00 0.00 2.52
161 162 2.039216 TCATCTGCACCCGGTTAGAAAA 59.961 45.455 0.00 0.00 0.00 2.29
162 163 1.886886 TCTGCACCCGGTTAGAAAAC 58.113 50.000 0.00 0.00 34.66 2.43
163 164 1.141254 TCTGCACCCGGTTAGAAAACA 59.859 47.619 0.00 0.00 37.34 2.83
164 165 1.950909 CTGCACCCGGTTAGAAAACAA 59.049 47.619 0.00 0.00 37.34 2.83
165 166 2.359531 CTGCACCCGGTTAGAAAACAAA 59.640 45.455 0.00 0.00 37.34 2.83
166 167 2.959707 TGCACCCGGTTAGAAAACAAAT 59.040 40.909 0.00 0.00 37.34 2.32
167 168 3.004944 TGCACCCGGTTAGAAAACAAATC 59.995 43.478 0.00 0.00 37.34 2.17
168 169 3.817238 CACCCGGTTAGAAAACAAATCG 58.183 45.455 0.00 0.00 37.34 3.34
169 170 3.251487 CACCCGGTTAGAAAACAAATCGT 59.749 43.478 0.00 0.00 37.34 3.73
170 171 4.451774 CACCCGGTTAGAAAACAAATCGTA 59.548 41.667 0.00 0.00 37.34 3.43
171 172 5.049543 CACCCGGTTAGAAAACAAATCGTAA 60.050 40.000 0.00 0.00 37.34 3.18
172 173 5.530543 ACCCGGTTAGAAAACAAATCGTAAA 59.469 36.000 0.00 0.00 37.34 2.01
173 174 6.039159 ACCCGGTTAGAAAACAAATCGTAAAA 59.961 34.615 0.00 0.00 37.34 1.52
174 175 6.916932 CCCGGTTAGAAAACAAATCGTAAAAA 59.083 34.615 0.00 0.00 37.34 1.94
226 227 6.523676 AAAATTTGTGCGGTAGACAATTTG 57.476 33.333 0.00 0.00 33.41 2.32
227 228 5.446143 AATTTGTGCGGTAGACAATTTGA 57.554 34.783 2.79 0.00 33.41 2.69
228 229 3.889196 TTGTGCGGTAGACAATTTGAC 57.111 42.857 2.79 0.00 0.00 3.18
229 230 1.795872 TGTGCGGTAGACAATTTGACG 59.204 47.619 2.79 1.41 0.00 4.35
230 231 0.793861 TGCGGTAGACAATTTGACGC 59.206 50.000 2.79 10.75 45.05 5.19
231 232 0.247145 GCGGTAGACAATTTGACGCG 60.247 55.000 3.53 3.53 36.14 6.01
232 233 1.065358 CGGTAGACAATTTGACGCGT 58.935 50.000 13.85 13.85 0.00 6.01
233 234 1.201769 CGGTAGACAATTTGACGCGTG 60.202 52.381 20.70 2.79 0.00 5.34
234 235 2.063266 GGTAGACAATTTGACGCGTGA 58.937 47.619 20.70 4.74 0.00 4.35
235 236 2.092211 GGTAGACAATTTGACGCGTGAG 59.908 50.000 20.70 0.00 0.00 3.51
236 237 1.148310 AGACAATTTGACGCGTGAGG 58.852 50.000 20.70 1.31 0.00 3.86
237 238 0.452784 GACAATTTGACGCGTGAGGC 60.453 55.000 20.70 1.49 38.69 4.70
238 239 0.884704 ACAATTTGACGCGTGAGGCT 60.885 50.000 20.70 0.00 40.44 4.58
239 240 0.179215 CAATTTGACGCGTGAGGCTC 60.179 55.000 20.70 7.79 40.44 4.70
240 241 1.626654 AATTTGACGCGTGAGGCTCG 61.627 55.000 20.70 0.00 40.44 5.03
247 248 4.116328 CGTGAGGCTCGCTCCGAA 62.116 66.667 24.23 0.00 34.74 4.30
248 249 2.261671 GTGAGGCTCGCTCCGAAA 59.738 61.111 20.43 0.00 34.74 3.46
249 250 1.153549 GTGAGGCTCGCTCCGAAAT 60.154 57.895 20.43 0.00 34.74 2.17
250 251 0.741221 GTGAGGCTCGCTCCGAAATT 60.741 55.000 20.43 0.00 34.74 1.82
251 252 0.460284 TGAGGCTCGCTCCGAAATTC 60.460 55.000 10.42 0.00 34.74 2.17
252 253 0.460284 GAGGCTCGCTCCGAAATTCA 60.460 55.000 0.00 0.00 34.74 2.57
253 254 0.036388 AGGCTCGCTCCGAAATTCAA 60.036 50.000 0.00 0.00 34.74 2.69
254 255 0.375106 GGCTCGCTCCGAAATTCAAG 59.625 55.000 0.00 0.00 34.74 3.02
255 256 1.079503 GCTCGCTCCGAAATTCAAGT 58.920 50.000 0.00 0.00 34.74 3.16
256 257 1.061276 GCTCGCTCCGAAATTCAAGTC 59.939 52.381 0.00 0.00 34.74 3.01
257 258 2.337583 CTCGCTCCGAAATTCAAGTCA 58.662 47.619 0.00 0.00 34.74 3.41
258 259 2.932614 CTCGCTCCGAAATTCAAGTCAT 59.067 45.455 0.00 0.00 34.74 3.06
259 260 3.334691 TCGCTCCGAAATTCAAGTCATT 58.665 40.909 0.00 0.00 31.06 2.57
260 261 3.751175 TCGCTCCGAAATTCAAGTCATTT 59.249 39.130 0.00 0.00 31.06 2.32
261 262 3.848019 CGCTCCGAAATTCAAGTCATTTG 59.152 43.478 0.00 0.00 38.17 2.32
262 263 4.168760 GCTCCGAAATTCAAGTCATTTGG 58.831 43.478 0.00 0.00 37.39 3.28
263 264 4.082787 GCTCCGAAATTCAAGTCATTTGGA 60.083 41.667 0.00 0.00 37.39 3.53
275 276 2.424956 GTCATTTGGACATCTGGGAAGC 59.575 50.000 0.00 0.00 46.19 3.86
276 277 2.309755 TCATTTGGACATCTGGGAAGCT 59.690 45.455 0.00 0.00 0.00 3.74
277 278 2.496899 TTTGGACATCTGGGAAGCTC 57.503 50.000 0.00 0.00 0.00 4.09
278 279 1.661463 TTGGACATCTGGGAAGCTCT 58.339 50.000 0.00 0.00 0.00 4.09
279 280 1.198713 TGGACATCTGGGAAGCTCTC 58.801 55.000 0.00 0.00 0.00 3.20
280 281 1.198713 GGACATCTGGGAAGCTCTCA 58.801 55.000 0.00 0.00 0.00 3.27
281 282 1.138661 GGACATCTGGGAAGCTCTCAG 59.861 57.143 6.69 6.69 46.25 3.35
282 283 0.540923 ACATCTGGGAAGCTCTCAGC 59.459 55.000 7.86 0.00 44.55 4.26
283 284 0.540454 CATCTGGGAAGCTCTCAGCA 59.460 55.000 7.86 0.16 44.55 4.41
284 285 1.065636 CATCTGGGAAGCTCTCAGCAA 60.066 52.381 7.86 0.00 44.55 3.91
285 286 1.059098 TCTGGGAAGCTCTCAGCAAA 58.941 50.000 7.86 0.00 44.55 3.68
286 287 1.421268 TCTGGGAAGCTCTCAGCAAAA 59.579 47.619 7.86 0.00 44.55 2.44
287 288 2.158623 TCTGGGAAGCTCTCAGCAAAAA 60.159 45.455 7.86 0.00 44.55 1.94
314 315 9.850628 AGACAAATCAGATCAAAACAATACATG 57.149 29.630 0.00 0.00 0.00 3.21
315 316 9.844790 GACAAATCAGATCAAAACAATACATGA 57.155 29.630 0.00 0.00 0.00 3.07
319 320 9.850628 AATCAGATCAAAACAATACATGAACAG 57.149 29.630 0.00 0.00 0.00 3.16
320 321 8.394971 TCAGATCAAAACAATACATGAACAGT 57.605 30.769 0.00 0.00 0.00 3.55
321 322 9.500785 TCAGATCAAAACAATACATGAACAGTA 57.499 29.630 0.00 0.00 0.00 2.74
336 337 9.730420 ACATGAACAGTAAACATTTTTACAGAC 57.270 29.630 15.08 8.61 46.66 3.51
337 338 9.180678 CATGAACAGTAAACATTTTTACAGACC 57.819 33.333 15.08 6.74 46.66 3.85
338 339 7.708998 TGAACAGTAAACATTTTTACAGACCC 58.291 34.615 15.08 4.91 46.66 4.46
339 340 6.644248 ACAGTAAACATTTTTACAGACCCC 57.356 37.500 15.08 0.00 46.66 4.95
340 341 5.537295 ACAGTAAACATTTTTACAGACCCCC 59.463 40.000 15.08 0.00 46.66 5.40
341 342 5.536916 CAGTAAACATTTTTACAGACCCCCA 59.463 40.000 15.08 0.00 46.66 4.96
342 343 6.041069 CAGTAAACATTTTTACAGACCCCCAA 59.959 38.462 15.08 0.00 46.66 4.12
343 344 6.785466 AGTAAACATTTTTACAGACCCCCAAT 59.215 34.615 15.08 0.00 46.66 3.16
344 345 5.738619 AACATTTTTACAGACCCCCAATC 57.261 39.130 0.00 0.00 0.00 2.67
345 346 5.010708 ACATTTTTACAGACCCCCAATCT 57.989 39.130 0.00 0.00 0.00 2.40
354 355 5.329035 CAGACCCCCAATCTGTATTTTTG 57.671 43.478 0.00 0.00 39.04 2.44
355 356 3.769300 AGACCCCCAATCTGTATTTTTGC 59.231 43.478 0.00 0.00 0.00 3.68
356 357 3.769300 GACCCCCAATCTGTATTTTTGCT 59.231 43.478 0.00 0.00 0.00 3.91
357 358 3.515104 ACCCCCAATCTGTATTTTTGCTG 59.485 43.478 0.00 0.00 0.00 4.41
358 359 3.768757 CCCCCAATCTGTATTTTTGCTGA 59.231 43.478 0.00 0.00 0.00 4.26
359 360 4.142093 CCCCCAATCTGTATTTTTGCTGAG 60.142 45.833 0.00 0.00 0.00 3.35
360 361 4.706476 CCCCAATCTGTATTTTTGCTGAGA 59.294 41.667 0.00 0.00 0.00 3.27
361 362 5.163581 CCCCAATCTGTATTTTTGCTGAGAG 60.164 44.000 0.00 0.00 0.00 3.20
362 363 5.338365 CCAATCTGTATTTTTGCTGAGAGC 58.662 41.667 0.00 0.00 42.82 4.09
363 364 5.125097 CCAATCTGTATTTTTGCTGAGAGCT 59.875 40.000 0.00 0.00 42.97 4.09
364 365 6.256686 CAATCTGTATTTTTGCTGAGAGCTC 58.743 40.000 5.27 5.27 42.97 4.09
365 366 4.256920 TCTGTATTTTTGCTGAGAGCTCC 58.743 43.478 10.93 2.40 42.97 4.70
366 367 4.019860 TCTGTATTTTTGCTGAGAGCTCCT 60.020 41.667 10.93 0.00 42.97 3.69
367 368 4.256920 TGTATTTTTGCTGAGAGCTCCTC 58.743 43.478 10.93 8.11 42.97 3.71
376 377 3.319031 TGAGAGCTCCTCATATGTCCA 57.681 47.619 10.93 0.00 46.38 4.02
377 378 3.646534 TGAGAGCTCCTCATATGTCCAA 58.353 45.455 10.93 0.00 46.38 3.53
378 379 4.033009 TGAGAGCTCCTCATATGTCCAAA 58.967 43.478 10.93 0.00 46.38 3.28
379 380 4.657504 TGAGAGCTCCTCATATGTCCAAAT 59.342 41.667 10.93 0.00 46.38 2.32
380 381 4.970711 AGAGCTCCTCATATGTCCAAATG 58.029 43.478 10.93 0.00 32.06 2.32
381 382 4.657504 AGAGCTCCTCATATGTCCAAATGA 59.342 41.667 10.93 0.00 32.06 2.57
382 383 4.712476 AGCTCCTCATATGTCCAAATGAC 58.288 43.478 1.90 0.00 44.72 3.06
383 384 7.824561 AGAGCTCCTCATATGTCCAAATGACA 61.825 42.308 10.93 0.00 44.61 3.58
395 396 6.956299 GTCCAAATGACATGAAAATTGGAG 57.044 37.500 20.20 3.55 44.92 3.86
396 397 6.458210 GTCCAAATGACATGAAAATTGGAGT 58.542 36.000 20.20 0.00 44.92 3.85
397 398 6.366877 GTCCAAATGACATGAAAATTGGAGTG 59.633 38.462 20.20 5.63 44.92 3.51
398 399 5.640357 CCAAATGACATGAAAATTGGAGTGG 59.360 40.000 15.29 6.56 39.69 4.00
399 400 6.457355 CAAATGACATGAAAATTGGAGTGGA 58.543 36.000 0.00 0.00 0.00 4.02
400 401 5.649782 ATGACATGAAAATTGGAGTGGAC 57.350 39.130 0.00 0.00 0.00 4.02
401 402 3.826157 TGACATGAAAATTGGAGTGGACC 59.174 43.478 0.00 0.00 0.00 4.46
402 403 4.082125 GACATGAAAATTGGAGTGGACCT 58.918 43.478 0.00 0.00 0.00 3.85
403 404 4.082125 ACATGAAAATTGGAGTGGACCTC 58.918 43.478 0.00 0.00 39.67 3.85
404 405 3.874383 TGAAAATTGGAGTGGACCTCA 57.126 42.857 0.00 0.00 42.40 3.86
405 406 3.486383 TGAAAATTGGAGTGGACCTCAC 58.514 45.455 0.00 0.00 46.39 3.51
412 413 4.693532 GTGGACCTCACGCATCAA 57.306 55.556 0.00 0.00 36.56 2.57
413 414 2.927004 GTGGACCTCACGCATCAAA 58.073 52.632 0.00 0.00 36.56 2.69
414 415 1.453155 GTGGACCTCACGCATCAAAT 58.547 50.000 0.00 0.00 36.56 2.32
415 416 1.812571 GTGGACCTCACGCATCAAATT 59.187 47.619 0.00 0.00 36.56 1.82
416 417 1.811965 TGGACCTCACGCATCAAATTG 59.188 47.619 0.00 0.00 0.00 2.32
417 418 1.812571 GGACCTCACGCATCAAATTGT 59.187 47.619 0.00 0.00 0.00 2.71
418 419 2.159517 GGACCTCACGCATCAAATTGTC 60.160 50.000 0.00 0.00 0.00 3.18
419 420 2.744202 GACCTCACGCATCAAATTGTCT 59.256 45.455 0.00 0.00 0.00 3.41
420 421 3.932710 GACCTCACGCATCAAATTGTCTA 59.067 43.478 0.00 0.00 0.00 2.59
421 422 4.517285 ACCTCACGCATCAAATTGTCTAT 58.483 39.130 0.00 0.00 0.00 1.98
422 423 4.572389 ACCTCACGCATCAAATTGTCTATC 59.428 41.667 0.00 0.00 0.00 2.08
423 424 4.571984 CCTCACGCATCAAATTGTCTATCA 59.428 41.667 0.00 0.00 0.00 2.15
424 425 5.469373 TCACGCATCAAATTGTCTATCAC 57.531 39.130 0.00 0.00 0.00 3.06
425 426 4.934602 TCACGCATCAAATTGTCTATCACA 59.065 37.500 0.00 0.00 0.00 3.58
426 427 5.023920 CACGCATCAAATTGTCTATCACAC 58.976 41.667 0.00 0.00 33.41 3.82
427 428 4.694982 ACGCATCAAATTGTCTATCACACA 59.305 37.500 0.00 0.00 33.41 3.72
428 429 5.181056 ACGCATCAAATTGTCTATCACACAA 59.819 36.000 0.00 0.00 38.12 3.33
429 430 6.085573 CGCATCAAATTGTCTATCACACAAA 58.914 36.000 0.00 0.00 37.30 2.83
430 431 6.581919 CGCATCAAATTGTCTATCACACAAAA 59.418 34.615 0.00 0.00 37.30 2.44
431 432 7.114670 CGCATCAAATTGTCTATCACACAAAAA 59.885 33.333 0.00 0.00 37.30 1.94
488 489 2.511900 TTTTTCGTCAGCGGGGGT 59.488 55.556 0.00 0.00 38.89 4.95
489 490 1.894756 TTTTTCGTCAGCGGGGGTG 60.895 57.895 0.00 0.00 38.89 4.61
494 495 4.101448 GTCAGCGGGGGTGCAGAT 62.101 66.667 0.00 0.00 37.31 2.90
495 496 4.100084 TCAGCGGGGGTGCAGATG 62.100 66.667 0.00 0.00 37.31 2.90
496 497 4.100084 CAGCGGGGGTGCAGATGA 62.100 66.667 0.00 0.00 37.31 2.92
497 498 3.790437 AGCGGGGGTGCAGATGAG 61.790 66.667 0.00 0.00 37.31 2.90
499 500 3.790437 CGGGGGTGCAGATGAGCT 61.790 66.667 0.00 0.00 34.99 4.09
500 501 2.191641 GGGGGTGCAGATGAGCTC 59.808 66.667 6.82 6.82 34.99 4.09
501 502 2.202987 GGGGTGCAGATGAGCTCG 60.203 66.667 9.64 0.00 34.99 5.03
502 503 2.202987 GGGTGCAGATGAGCTCGG 60.203 66.667 9.64 0.00 34.99 4.63
503 504 2.725312 GGGTGCAGATGAGCTCGGA 61.725 63.158 9.64 0.00 34.99 4.55
504 505 1.445095 GGTGCAGATGAGCTCGGAT 59.555 57.895 9.64 0.00 34.99 4.18
505 506 0.879400 GGTGCAGATGAGCTCGGATG 60.879 60.000 9.64 8.29 34.99 3.51
506 507 1.227468 TGCAGATGAGCTCGGATGC 60.227 57.895 22.78 22.78 34.99 3.91
507 508 1.227468 GCAGATGAGCTCGGATGCA 60.227 57.895 23.94 2.82 33.92 3.96
508 509 1.222766 GCAGATGAGCTCGGATGCAG 61.223 60.000 23.94 7.26 33.92 4.41
509 510 0.388294 CAGATGAGCTCGGATGCAGA 59.612 55.000 9.64 0.00 34.99 4.26
510 511 1.001068 CAGATGAGCTCGGATGCAGAT 59.999 52.381 9.64 0.00 34.99 2.90
511 512 2.230750 CAGATGAGCTCGGATGCAGATA 59.769 50.000 9.64 0.00 34.99 1.98
512 513 3.098377 AGATGAGCTCGGATGCAGATAT 58.902 45.455 9.64 0.00 34.99 1.63
513 514 2.738013 TGAGCTCGGATGCAGATATG 57.262 50.000 9.64 0.00 34.99 1.78
514 515 1.274447 TGAGCTCGGATGCAGATATGG 59.726 52.381 9.64 0.00 34.99 2.74
515 516 1.547820 GAGCTCGGATGCAGATATGGA 59.452 52.381 0.00 0.00 34.99 3.41
516 517 2.168106 GAGCTCGGATGCAGATATGGAT 59.832 50.000 0.00 0.00 34.99 3.41
517 518 2.570752 AGCTCGGATGCAGATATGGATT 59.429 45.455 0.00 0.00 34.99 3.01
518 519 3.008813 AGCTCGGATGCAGATATGGATTT 59.991 43.478 0.00 0.00 34.99 2.17
519 520 3.755378 GCTCGGATGCAGATATGGATTTT 59.245 43.478 0.00 0.00 0.00 1.82
520 521 4.142730 GCTCGGATGCAGATATGGATTTTC 60.143 45.833 0.00 0.00 0.00 2.29
591 592 2.726691 CTCGCGCGTCCAACGAAAT 61.727 57.895 30.98 0.00 46.05 2.17
603 604 6.146898 CGTCCAACGAAATGAAAAGGTAAAT 58.853 36.000 0.00 0.00 46.05 1.40
604 605 6.304683 CGTCCAACGAAATGAAAAGGTAAATC 59.695 38.462 0.00 0.00 46.05 2.17
735 762 0.382515 CGTTCTCCTCTCGGGCTAAG 59.617 60.000 0.00 0.00 34.39 2.18
964 1009 1.379309 GAGGAGGAGCTCGAGTGGT 60.379 63.158 15.13 0.00 0.00 4.16
1311 1356 1.276859 ATGCACCCTCTGATCAGGCA 61.277 55.000 22.42 21.60 31.23 4.75
1370 1415 0.854218 TTTGGGTTGCTTGGTAGGGA 59.146 50.000 0.00 0.00 0.00 4.20
1391 1436 4.503910 GAAAATGGAGGTAATGTTTGGCC 58.496 43.478 0.00 0.00 0.00 5.36
1435 1480 2.825836 GCGAGGCATTGGGGACTG 60.826 66.667 0.00 0.00 0.00 3.51
1665 1710 2.436646 ACAATGGAGCCGAAGCCG 60.437 61.111 0.00 0.00 41.25 5.52
1985 2030 2.675844 CGGACAAGTGAAGTGTTGACAA 59.324 45.455 0.00 0.00 0.00 3.18
2020 2065 8.931775 GCCGTTTGGAGATTTATTTATGTTTTT 58.068 29.630 0.00 0.00 37.49 1.94
2293 2339 5.666462 TGTTATAGCGCTAATGGTTTGAGA 58.334 37.500 22.98 0.00 0.00 3.27
2295 2341 2.472695 AGCGCTAATGGTTTGAGACA 57.527 45.000 8.99 0.00 0.00 3.41
2364 2410 4.291792 TCCAGGGATAAACAGTTCCGATA 58.708 43.478 0.00 0.00 32.48 2.92
2439 2485 6.519382 CATTGAGATAGCATGTACTCCTTCA 58.481 40.000 0.00 0.00 0.00 3.02
2531 2847 9.692325 AAAGAGCCACATTTAATTAAGATCTCT 57.308 29.630 0.00 4.09 0.00 3.10
2641 2957 7.092748 TCTCTATAACACTATGCTCCCTAGT 57.907 40.000 0.00 0.00 0.00 2.57
2654 2970 3.887352 CTCCCTAGTTTTAAAGAGCCCC 58.113 50.000 0.00 0.00 0.00 5.80
2672 2988 3.624707 GCCCCACATTCAATTGAGGTCTA 60.625 47.826 8.41 0.00 0.00 2.59
2673 2989 4.599041 CCCCACATTCAATTGAGGTCTAA 58.401 43.478 8.41 0.00 0.00 2.10
2674 2990 4.399303 CCCCACATTCAATTGAGGTCTAAC 59.601 45.833 8.41 0.00 0.00 2.34
2699 3021 1.611519 GTCACCCAATTTTGACCCGA 58.388 50.000 1.61 0.00 36.85 5.14
2701 3023 3.349022 GTCACCCAATTTTGACCCGATA 58.651 45.455 1.61 0.00 36.85 2.92
2718 3040 7.662258 TGACCCGATAAACAATTTCTCAAAGTA 59.338 33.333 0.00 0.00 0.00 2.24
2785 3107 6.625960 GCTTCCTAATTTTTAAGGCCTCACAG 60.626 42.308 5.23 0.00 32.55 3.66
2868 3190 6.039717 TCTCAAACTCTCCCATTCAGTTTTTG 59.960 38.462 0.00 0.00 38.11 2.44
2899 3223 8.325787 TCACTATGTTCCCTAATTTTGAAGCTA 58.674 33.333 0.00 0.00 0.00 3.32
2905 3238 8.865090 TGTTCCCTAATTTTGAAGCTATTTGAA 58.135 29.630 0.00 0.00 0.00 2.69
2941 3274 8.792830 TTGAATTTGGTTTACAATTTTGACCA 57.207 26.923 0.00 0.00 39.21 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.760580 ATTACATCACCAGCCTAGAGC 57.239 47.619 0.00 0.00 44.25 4.09
31 32 9.453325 CGTTTTAAACTTACCTCTGCAAATAAA 57.547 29.630 6.27 0.00 0.00 1.40
32 33 8.623030 ACGTTTTAAACTTACCTCTGCAAATAA 58.377 29.630 6.27 0.00 0.00 1.40
33 34 8.156994 ACGTTTTAAACTTACCTCTGCAAATA 57.843 30.769 6.27 0.00 0.00 1.40
34 35 7.034685 ACGTTTTAAACTTACCTCTGCAAAT 57.965 32.000 6.27 0.00 0.00 2.32
35 36 6.439675 ACGTTTTAAACTTACCTCTGCAAA 57.560 33.333 6.27 0.00 0.00 3.68
36 37 6.259638 CAACGTTTTAAACTTACCTCTGCAA 58.740 36.000 0.00 0.00 0.00 4.08
37 38 5.731126 GCAACGTTTTAAACTTACCTCTGCA 60.731 40.000 0.00 0.00 0.00 4.41
38 39 4.673761 GCAACGTTTTAAACTTACCTCTGC 59.326 41.667 0.00 0.00 0.00 4.26
39 40 5.812652 TGCAACGTTTTAAACTTACCTCTG 58.187 37.500 0.00 0.00 0.00 3.35
40 41 5.587443 ACTGCAACGTTTTAAACTTACCTCT 59.413 36.000 0.00 0.00 0.00 3.69
41 42 5.813717 ACTGCAACGTTTTAAACTTACCTC 58.186 37.500 0.00 0.00 0.00 3.85
42 43 5.823209 ACTGCAACGTTTTAAACTTACCT 57.177 34.783 0.00 0.00 0.00 3.08
43 44 6.018016 TCCTACTGCAACGTTTTAAACTTACC 60.018 38.462 0.00 0.00 0.00 2.85
44 45 6.947258 TCCTACTGCAACGTTTTAAACTTAC 58.053 36.000 0.00 0.00 0.00 2.34
45 46 7.733402 ATCCTACTGCAACGTTTTAAACTTA 57.267 32.000 0.00 0.00 0.00 2.24
46 47 6.628919 ATCCTACTGCAACGTTTTAAACTT 57.371 33.333 0.00 0.00 0.00 2.66
47 48 6.628919 AATCCTACTGCAACGTTTTAAACT 57.371 33.333 0.00 0.00 0.00 2.66
48 49 7.688478 AAAATCCTACTGCAACGTTTTAAAC 57.312 32.000 0.00 0.00 0.00 2.01
75 76 9.628746 GTTTGTTAACAAGAAAACAGTAGGAAA 57.371 29.630 19.72 0.00 36.96 3.13
76 77 8.794553 TGTTTGTTAACAAGAAAACAGTAGGAA 58.205 29.630 19.72 0.00 41.15 3.36
77 78 8.338072 TGTTTGTTAACAAGAAAACAGTAGGA 57.662 30.769 19.72 0.00 41.15 2.94
78 79 8.973835 TTGTTTGTTAACAAGAAAACAGTAGG 57.026 30.769 19.72 0.00 46.46 3.18
91 92 8.818141 TCAACATCACTTTTTGTTTGTTAACA 57.182 26.923 3.59 3.59 42.34 2.41
92 93 8.921670 ACTCAACATCACTTTTTGTTTGTTAAC 58.078 29.630 0.00 0.00 33.93 2.01
94 95 9.781834 CTACTCAACATCACTTTTTGTTTGTTA 57.218 29.630 0.00 0.00 33.93 2.41
95 96 7.759433 CCTACTCAACATCACTTTTTGTTTGTT 59.241 33.333 0.00 0.00 33.93 2.83
96 97 7.257722 CCTACTCAACATCACTTTTTGTTTGT 58.742 34.615 0.00 0.00 33.93 2.83
97 98 6.697019 CCCTACTCAACATCACTTTTTGTTTG 59.303 38.462 0.00 0.00 33.93 2.93
98 99 6.682861 GCCCTACTCAACATCACTTTTTGTTT 60.683 38.462 0.00 0.00 33.93 2.83
99 100 5.221244 GCCCTACTCAACATCACTTTTTGTT 60.221 40.000 0.00 0.00 36.53 2.83
100 101 4.278419 GCCCTACTCAACATCACTTTTTGT 59.722 41.667 0.00 0.00 0.00 2.83
101 102 4.613622 CGCCCTACTCAACATCACTTTTTG 60.614 45.833 0.00 0.00 0.00 2.44
102 103 3.502211 CGCCCTACTCAACATCACTTTTT 59.498 43.478 0.00 0.00 0.00 1.94
103 104 3.074412 CGCCCTACTCAACATCACTTTT 58.926 45.455 0.00 0.00 0.00 2.27
104 105 2.038557 ACGCCCTACTCAACATCACTTT 59.961 45.455 0.00 0.00 0.00 2.66
105 106 1.623811 ACGCCCTACTCAACATCACTT 59.376 47.619 0.00 0.00 0.00 3.16
106 107 1.267121 ACGCCCTACTCAACATCACT 58.733 50.000 0.00 0.00 0.00 3.41
107 108 2.094762 AACGCCCTACTCAACATCAC 57.905 50.000 0.00 0.00 0.00 3.06
108 109 2.695359 GAAACGCCCTACTCAACATCA 58.305 47.619 0.00 0.00 0.00 3.07
109 110 1.659098 CGAAACGCCCTACTCAACATC 59.341 52.381 0.00 0.00 0.00 3.06
110 111 1.674817 CCGAAACGCCCTACTCAACAT 60.675 52.381 0.00 0.00 0.00 2.71
111 112 0.320073 CCGAAACGCCCTACTCAACA 60.320 55.000 0.00 0.00 0.00 3.33
112 113 0.320160 ACCGAAACGCCCTACTCAAC 60.320 55.000 0.00 0.00 0.00 3.18
113 114 0.320073 CACCGAAACGCCCTACTCAA 60.320 55.000 0.00 0.00 0.00 3.02
114 115 1.290955 CACCGAAACGCCCTACTCA 59.709 57.895 0.00 0.00 0.00 3.41
115 116 2.098831 GCACCGAAACGCCCTACTC 61.099 63.158 0.00 0.00 0.00 2.59
116 117 2.047560 GCACCGAAACGCCCTACT 60.048 61.111 0.00 0.00 0.00 2.57
117 118 3.122971 GGCACCGAAACGCCCTAC 61.123 66.667 0.00 0.00 42.82 3.18
122 123 3.497031 GCCTAGGCACCGAAACGC 61.497 66.667 29.33 0.00 41.49 4.84
123 124 1.810030 GAGCCTAGGCACCGAAACG 60.810 63.158 34.70 0.00 44.88 3.60
124 125 0.107654 ATGAGCCTAGGCACCGAAAC 60.108 55.000 34.70 16.10 44.88 2.78
125 126 0.178068 GATGAGCCTAGGCACCGAAA 59.822 55.000 34.70 13.72 44.88 3.46
126 127 0.687757 AGATGAGCCTAGGCACCGAA 60.688 55.000 34.70 14.09 44.88 4.30
127 128 1.075970 AGATGAGCCTAGGCACCGA 60.076 57.895 34.70 14.85 44.88 4.69
128 129 1.068753 CAGATGAGCCTAGGCACCG 59.931 63.158 34.70 13.58 44.88 4.94
129 130 1.227793 GCAGATGAGCCTAGGCACC 60.228 63.158 34.70 24.85 44.88 5.01
130 131 0.813210 GTGCAGATGAGCCTAGGCAC 60.813 60.000 34.70 28.76 43.78 5.01
131 132 1.524002 GTGCAGATGAGCCTAGGCA 59.476 57.895 34.70 16.70 44.88 4.75
132 133 1.227793 GGTGCAGATGAGCCTAGGC 60.228 63.158 27.19 27.19 42.33 3.93
133 134 1.449353 GGGTGCAGATGAGCCTAGG 59.551 63.158 3.67 3.67 0.00 3.02
134 135 1.068753 CGGGTGCAGATGAGCCTAG 59.931 63.158 0.00 0.00 0.00 3.02
135 136 2.434843 CCGGGTGCAGATGAGCCTA 61.435 63.158 0.00 0.00 0.00 3.93
136 137 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
137 138 2.252072 TAACCGGGTGCAGATGAGCC 62.252 60.000 0.00 0.00 0.00 4.70
138 139 0.811616 CTAACCGGGTGCAGATGAGC 60.812 60.000 0.00 0.00 0.00 4.26
139 140 0.824109 TCTAACCGGGTGCAGATGAG 59.176 55.000 0.00 0.00 0.00 2.90
140 141 1.271856 TTCTAACCGGGTGCAGATGA 58.728 50.000 0.00 0.00 0.00 2.92
141 142 2.107950 TTTCTAACCGGGTGCAGATG 57.892 50.000 0.00 0.00 0.00 2.90
142 143 2.224670 TGTTTTCTAACCGGGTGCAGAT 60.225 45.455 0.00 0.00 33.15 2.90
143 144 1.141254 TGTTTTCTAACCGGGTGCAGA 59.859 47.619 0.00 3.87 33.15 4.26
144 145 1.600023 TGTTTTCTAACCGGGTGCAG 58.400 50.000 0.00 1.10 33.15 4.41
145 146 2.054232 TTGTTTTCTAACCGGGTGCA 57.946 45.000 0.00 0.00 33.15 4.57
146 147 3.571571 GATTTGTTTTCTAACCGGGTGC 58.428 45.455 0.00 0.00 33.15 5.01
147 148 3.251487 ACGATTTGTTTTCTAACCGGGTG 59.749 43.478 0.00 0.00 33.15 4.61
148 149 3.479489 ACGATTTGTTTTCTAACCGGGT 58.521 40.909 6.32 0.00 33.15 5.28
149 150 5.610235 TTACGATTTGTTTTCTAACCGGG 57.390 39.130 6.32 0.00 33.15 5.73
150 151 7.911362 TTTTTACGATTTGTTTTCTAACCGG 57.089 32.000 0.00 0.00 33.15 5.28
202 203 6.758886 TCAAATTGTCTACCGCACAAATTTTT 59.241 30.769 0.00 0.00 37.30 1.94
203 204 6.200097 GTCAAATTGTCTACCGCACAAATTTT 59.800 34.615 0.00 0.00 37.30 1.82
204 205 5.689961 GTCAAATTGTCTACCGCACAAATTT 59.310 36.000 0.00 0.00 37.30 1.82
205 206 5.219633 GTCAAATTGTCTACCGCACAAATT 58.780 37.500 0.00 0.00 37.30 1.82
206 207 4.612712 CGTCAAATTGTCTACCGCACAAAT 60.613 41.667 0.00 0.00 37.30 2.32
207 208 3.303461 CGTCAAATTGTCTACCGCACAAA 60.303 43.478 0.00 0.00 37.30 2.83
208 209 2.222213 CGTCAAATTGTCTACCGCACAA 59.778 45.455 0.00 0.00 38.12 3.33
209 210 1.795872 CGTCAAATTGTCTACCGCACA 59.204 47.619 0.00 0.00 0.00 4.57
210 211 1.463528 GCGTCAAATTGTCTACCGCAC 60.464 52.381 0.00 0.00 39.45 5.34
211 212 0.793861 GCGTCAAATTGTCTACCGCA 59.206 50.000 0.00 0.00 39.45 5.69
212 213 0.247145 CGCGTCAAATTGTCTACCGC 60.247 55.000 0.00 0.00 36.57 5.68
213 214 1.065358 ACGCGTCAAATTGTCTACCG 58.935 50.000 5.58 0.00 0.00 4.02
214 215 2.063266 TCACGCGTCAAATTGTCTACC 58.937 47.619 9.86 0.00 0.00 3.18
215 216 2.092211 CCTCACGCGTCAAATTGTCTAC 59.908 50.000 9.86 0.00 0.00 2.59
216 217 2.333926 CCTCACGCGTCAAATTGTCTA 58.666 47.619 9.86 0.00 0.00 2.59
217 218 1.148310 CCTCACGCGTCAAATTGTCT 58.852 50.000 9.86 0.00 0.00 3.41
218 219 0.452784 GCCTCACGCGTCAAATTGTC 60.453 55.000 9.86 0.00 0.00 3.18
219 220 0.884704 AGCCTCACGCGTCAAATTGT 60.885 50.000 9.86 0.00 44.76 2.71
220 221 0.179215 GAGCCTCACGCGTCAAATTG 60.179 55.000 9.86 0.00 44.76 2.32
221 222 1.626654 CGAGCCTCACGCGTCAAATT 61.627 55.000 9.86 0.00 44.76 1.82
222 223 2.094659 CGAGCCTCACGCGTCAAAT 61.095 57.895 9.86 0.00 44.76 2.32
223 224 2.733218 CGAGCCTCACGCGTCAAA 60.733 61.111 9.86 0.00 44.76 2.69
230 231 2.890847 ATTTCGGAGCGAGCCTCACG 62.891 60.000 0.00 0.00 42.62 4.35
231 232 0.741221 AATTTCGGAGCGAGCCTCAC 60.741 55.000 0.00 0.00 42.62 3.51
232 233 0.460284 GAATTTCGGAGCGAGCCTCA 60.460 55.000 0.00 0.00 42.62 3.86
233 234 0.460284 TGAATTTCGGAGCGAGCCTC 60.460 55.000 0.00 0.00 37.14 4.70
234 235 0.036388 TTGAATTTCGGAGCGAGCCT 60.036 50.000 0.00 0.00 37.14 4.58
235 236 0.375106 CTTGAATTTCGGAGCGAGCC 59.625 55.000 0.00 0.00 37.14 4.70
236 237 1.061276 GACTTGAATTTCGGAGCGAGC 59.939 52.381 0.00 0.00 37.14 5.03
237 238 2.337583 TGACTTGAATTTCGGAGCGAG 58.662 47.619 0.00 0.00 37.14 5.03
238 239 2.448926 TGACTTGAATTTCGGAGCGA 57.551 45.000 0.00 0.00 0.00 4.93
239 240 3.747099 AATGACTTGAATTTCGGAGCG 57.253 42.857 0.00 0.00 0.00 5.03
240 241 4.082787 TCCAAATGACTTGAATTTCGGAGC 60.083 41.667 0.00 0.00 37.17 4.70
241 242 5.048782 TGTCCAAATGACTTGAATTTCGGAG 60.049 40.000 0.00 0.00 44.75 4.63
242 243 4.824537 TGTCCAAATGACTTGAATTTCGGA 59.175 37.500 0.00 0.00 44.75 4.55
243 244 5.119931 TGTCCAAATGACTTGAATTTCGG 57.880 39.130 0.00 0.00 44.75 4.30
244 245 6.525628 CAGATGTCCAAATGACTTGAATTTCG 59.474 38.462 0.00 0.00 44.75 3.46
245 246 6.810182 CCAGATGTCCAAATGACTTGAATTTC 59.190 38.462 0.00 0.00 44.75 2.17
246 247 6.295462 CCCAGATGTCCAAATGACTTGAATTT 60.295 38.462 0.00 0.00 44.75 1.82
247 248 5.186409 CCCAGATGTCCAAATGACTTGAATT 59.814 40.000 0.00 0.00 44.75 2.17
248 249 4.708421 CCCAGATGTCCAAATGACTTGAAT 59.292 41.667 0.00 0.00 44.75 2.57
249 250 4.081406 CCCAGATGTCCAAATGACTTGAA 58.919 43.478 0.00 0.00 44.75 2.69
250 251 3.330405 TCCCAGATGTCCAAATGACTTGA 59.670 43.478 0.00 0.00 44.75 3.02
251 252 3.689347 TCCCAGATGTCCAAATGACTTG 58.311 45.455 0.00 0.00 44.75 3.16
252 253 4.338879 CTTCCCAGATGTCCAAATGACTT 58.661 43.478 0.00 0.00 44.75 3.01
253 254 3.875369 GCTTCCCAGATGTCCAAATGACT 60.875 47.826 0.00 0.00 44.75 3.41
254 255 2.424956 GCTTCCCAGATGTCCAAATGAC 59.575 50.000 0.00 0.00 44.72 3.06
255 256 2.309755 AGCTTCCCAGATGTCCAAATGA 59.690 45.455 0.00 0.00 0.00 2.57
256 257 2.686915 GAGCTTCCCAGATGTCCAAATG 59.313 50.000 0.00 0.00 0.00 2.32
257 258 2.579860 AGAGCTTCCCAGATGTCCAAAT 59.420 45.455 0.00 0.00 0.00 2.32
258 259 1.988107 AGAGCTTCCCAGATGTCCAAA 59.012 47.619 0.00 0.00 0.00 3.28
259 260 1.556911 GAGAGCTTCCCAGATGTCCAA 59.443 52.381 0.00 0.00 0.00 3.53
260 261 1.198713 GAGAGCTTCCCAGATGTCCA 58.801 55.000 0.00 0.00 0.00 4.02
261 262 1.138661 CTGAGAGCTTCCCAGATGTCC 59.861 57.143 5.36 0.00 27.34 4.02
262 263 1.473080 GCTGAGAGCTTCCCAGATGTC 60.473 57.143 13.05 0.00 38.45 3.06
263 264 0.540923 GCTGAGAGCTTCCCAGATGT 59.459 55.000 13.05 0.00 38.45 3.06
264 265 0.540454 TGCTGAGAGCTTCCCAGATG 59.460 55.000 13.05 0.00 42.97 2.90
265 266 1.283347 TTGCTGAGAGCTTCCCAGAT 58.717 50.000 13.05 0.00 42.97 2.90
266 267 1.059098 TTTGCTGAGAGCTTCCCAGA 58.941 50.000 13.05 0.00 42.97 3.86
267 268 1.901591 TTTTGCTGAGAGCTTCCCAG 58.098 50.000 0.00 0.00 42.97 4.45
268 269 2.363306 TTTTTGCTGAGAGCTTCCCA 57.637 45.000 0.00 0.00 42.97 4.37
288 289 9.850628 CATGTATTGTTTTGATCTGATTTGTCT 57.149 29.630 0.00 0.00 0.00 3.41
289 290 9.844790 TCATGTATTGTTTTGATCTGATTTGTC 57.155 29.630 0.00 0.00 0.00 3.18
293 294 9.850628 CTGTTCATGTATTGTTTTGATCTGATT 57.149 29.630 0.00 0.00 0.00 2.57
294 295 9.017509 ACTGTTCATGTATTGTTTTGATCTGAT 57.982 29.630 0.00 0.00 0.00 2.90
295 296 8.394971 ACTGTTCATGTATTGTTTTGATCTGA 57.605 30.769 0.00 0.00 0.00 3.27
310 311 9.730420 GTCTGTAAAAATGTTTACTGTTCATGT 57.270 29.630 17.45 0.00 46.29 3.21
311 312 9.180678 GGTCTGTAAAAATGTTTACTGTTCATG 57.819 33.333 17.45 0.00 46.29 3.07
312 313 8.357402 GGGTCTGTAAAAATGTTTACTGTTCAT 58.643 33.333 17.45 0.00 46.29 2.57
313 314 7.201839 GGGGTCTGTAAAAATGTTTACTGTTCA 60.202 37.037 17.45 1.80 46.29 3.18
314 315 7.143340 GGGGTCTGTAAAAATGTTTACTGTTC 58.857 38.462 17.45 13.68 46.29 3.18
315 316 6.041182 GGGGGTCTGTAAAAATGTTTACTGTT 59.959 38.462 17.45 0.00 46.29 3.16
316 317 5.537295 GGGGGTCTGTAAAAATGTTTACTGT 59.463 40.000 17.45 0.00 46.29 3.55
317 318 5.536916 TGGGGGTCTGTAAAAATGTTTACTG 59.463 40.000 17.45 16.56 46.29 2.74
318 319 5.707495 TGGGGGTCTGTAAAAATGTTTACT 58.293 37.500 17.45 0.00 46.29 2.24
319 320 6.408107 TTGGGGGTCTGTAAAAATGTTTAC 57.592 37.500 11.06 11.06 46.31 2.01
320 321 7.013834 AGATTGGGGGTCTGTAAAAATGTTTA 58.986 34.615 0.00 0.00 0.00 2.01
321 322 5.843969 AGATTGGGGGTCTGTAAAAATGTTT 59.156 36.000 0.00 0.00 0.00 2.83
322 323 5.245977 CAGATTGGGGGTCTGTAAAAATGTT 59.754 40.000 0.00 0.00 38.58 2.71
323 324 4.772100 CAGATTGGGGGTCTGTAAAAATGT 59.228 41.667 0.00 0.00 38.58 2.71
324 325 5.329035 CAGATTGGGGGTCTGTAAAAATG 57.671 43.478 0.00 0.00 38.58 2.32
332 333 4.381932 GCAAAAATACAGATTGGGGGTCTG 60.382 45.833 1.85 1.85 46.60 3.51
333 334 3.769300 GCAAAAATACAGATTGGGGGTCT 59.231 43.478 0.00 0.00 0.00 3.85
334 335 3.769300 AGCAAAAATACAGATTGGGGGTC 59.231 43.478 0.00 0.00 0.00 4.46
335 336 3.515104 CAGCAAAAATACAGATTGGGGGT 59.485 43.478 0.00 0.00 0.00 4.95
336 337 3.768757 TCAGCAAAAATACAGATTGGGGG 59.231 43.478 0.00 0.00 0.00 5.40
337 338 4.706476 TCTCAGCAAAAATACAGATTGGGG 59.294 41.667 0.00 0.00 0.00 4.96
338 339 5.678107 GCTCTCAGCAAAAATACAGATTGGG 60.678 44.000 0.00 0.00 41.89 4.12
339 340 5.125097 AGCTCTCAGCAAAAATACAGATTGG 59.875 40.000 0.00 0.00 45.56 3.16
340 341 6.192234 AGCTCTCAGCAAAAATACAGATTG 57.808 37.500 0.00 0.00 45.56 2.67
341 342 5.356470 GGAGCTCTCAGCAAAAATACAGATT 59.644 40.000 14.64 0.00 45.56 2.40
342 343 4.880696 GGAGCTCTCAGCAAAAATACAGAT 59.119 41.667 14.64 0.00 45.56 2.90
343 344 4.019860 AGGAGCTCTCAGCAAAAATACAGA 60.020 41.667 14.64 0.00 45.56 3.41
344 345 4.260170 AGGAGCTCTCAGCAAAAATACAG 58.740 43.478 14.64 0.00 45.56 2.74
345 346 4.256920 GAGGAGCTCTCAGCAAAAATACA 58.743 43.478 14.64 0.00 45.56 2.29
346 347 4.256920 TGAGGAGCTCTCAGCAAAAATAC 58.743 43.478 14.64 0.00 46.71 1.89
347 348 4.558226 TGAGGAGCTCTCAGCAAAAATA 57.442 40.909 14.64 0.00 46.71 1.40
348 349 3.430042 TGAGGAGCTCTCAGCAAAAAT 57.570 42.857 14.64 0.00 46.71 1.82
349 350 2.936919 TGAGGAGCTCTCAGCAAAAA 57.063 45.000 14.64 0.00 46.71 1.94
357 358 4.679373 TTTGGACATATGAGGAGCTCTC 57.321 45.455 14.64 9.73 42.74 3.20
358 359 4.657504 TCATTTGGACATATGAGGAGCTCT 59.342 41.667 14.64 0.00 0.00 4.09
359 360 4.754114 GTCATTTGGACATATGAGGAGCTC 59.246 45.833 10.38 4.71 46.19 4.09
360 361 4.712476 GTCATTTGGACATATGAGGAGCT 58.288 43.478 10.38 0.00 46.19 4.09
373 374 6.457355 CACTCCAATTTTCATGTCATTTGGA 58.543 36.000 13.05 13.05 40.08 3.53
374 375 5.640357 CCACTCCAATTTTCATGTCATTTGG 59.360 40.000 6.83 6.83 35.93 3.28
375 376 6.366877 GTCCACTCCAATTTTCATGTCATTTG 59.633 38.462 0.00 0.00 0.00 2.32
376 377 6.458210 GTCCACTCCAATTTTCATGTCATTT 58.542 36.000 0.00 0.00 0.00 2.32
377 378 5.047092 GGTCCACTCCAATTTTCATGTCATT 60.047 40.000 0.00 0.00 0.00 2.57
378 379 4.463891 GGTCCACTCCAATTTTCATGTCAT 59.536 41.667 0.00 0.00 0.00 3.06
379 380 3.826157 GGTCCACTCCAATTTTCATGTCA 59.174 43.478 0.00 0.00 0.00 3.58
380 381 4.082125 AGGTCCACTCCAATTTTCATGTC 58.918 43.478 0.00 0.00 0.00 3.06
381 382 4.082125 GAGGTCCACTCCAATTTTCATGT 58.918 43.478 0.00 0.00 40.49 3.21
382 383 4.081406 TGAGGTCCACTCCAATTTTCATG 58.919 43.478 0.00 0.00 46.01 3.07
383 384 4.082125 GTGAGGTCCACTCCAATTTTCAT 58.918 43.478 0.00 0.00 46.01 2.57
384 385 3.486383 GTGAGGTCCACTCCAATTTTCA 58.514 45.455 0.00 0.00 46.01 2.69
385 386 2.484264 CGTGAGGTCCACTCCAATTTTC 59.516 50.000 0.00 0.00 46.01 2.29
386 387 2.504367 CGTGAGGTCCACTCCAATTTT 58.496 47.619 0.00 0.00 46.01 1.82
387 388 1.882352 GCGTGAGGTCCACTCCAATTT 60.882 52.381 0.00 0.00 46.01 1.82
388 389 0.321653 GCGTGAGGTCCACTCCAATT 60.322 55.000 0.00 0.00 46.01 2.32
389 390 1.296715 GCGTGAGGTCCACTCCAAT 59.703 57.895 0.00 0.00 46.01 3.16
390 391 1.480212 ATGCGTGAGGTCCACTCCAA 61.480 55.000 0.00 0.00 46.01 3.53
391 392 1.888436 GATGCGTGAGGTCCACTCCA 61.888 60.000 0.00 0.00 46.01 3.86
392 393 1.153549 GATGCGTGAGGTCCACTCC 60.154 63.158 0.00 0.00 46.01 3.85
393 394 0.037326 TTGATGCGTGAGGTCCACTC 60.037 55.000 0.00 0.00 46.78 3.51
394 395 0.396435 TTTGATGCGTGAGGTCCACT 59.604 50.000 0.00 0.00 43.53 4.00
395 396 1.453155 ATTTGATGCGTGAGGTCCAC 58.547 50.000 0.00 0.00 42.30 4.02
396 397 1.811965 CAATTTGATGCGTGAGGTCCA 59.188 47.619 0.00 0.00 0.00 4.02
397 398 1.812571 ACAATTTGATGCGTGAGGTCC 59.187 47.619 2.79 0.00 0.00 4.46
398 399 2.744202 AGACAATTTGATGCGTGAGGTC 59.256 45.455 2.79 0.00 0.00 3.85
399 400 2.783135 AGACAATTTGATGCGTGAGGT 58.217 42.857 2.79 0.00 0.00 3.85
400 401 4.571984 TGATAGACAATTTGATGCGTGAGG 59.428 41.667 2.79 0.00 0.00 3.86
401 402 5.063817 TGTGATAGACAATTTGATGCGTGAG 59.936 40.000 2.79 0.00 0.00 3.51
402 403 4.934602 TGTGATAGACAATTTGATGCGTGA 59.065 37.500 2.79 0.00 0.00 4.35
403 404 5.023920 GTGTGATAGACAATTTGATGCGTG 58.976 41.667 2.79 0.00 35.91 5.34
404 405 4.694982 TGTGTGATAGACAATTTGATGCGT 59.305 37.500 2.79 0.00 35.91 5.24
405 406 5.220557 TGTGTGATAGACAATTTGATGCG 57.779 39.130 2.79 0.00 35.91 4.73
406 407 7.872163 TTTTGTGTGATAGACAATTTGATGC 57.128 32.000 2.79 0.00 35.91 3.91
471 472 1.894756 CACCCCCGCTGACGAAAAA 60.895 57.895 0.00 0.00 43.93 1.94
472 473 2.281208 CACCCCCGCTGACGAAAA 60.281 61.111 0.00 0.00 43.93 2.29
477 478 4.101448 ATCTGCACCCCCGCTGAC 62.101 66.667 0.00 0.00 41.80 3.51
478 479 4.100084 CATCTGCACCCCCGCTGA 62.100 66.667 0.00 0.00 42.94 4.26
479 480 4.100084 TCATCTGCACCCCCGCTG 62.100 66.667 0.00 0.00 0.00 5.18
480 481 3.790437 CTCATCTGCACCCCCGCT 61.790 66.667 0.00 0.00 0.00 5.52
482 483 3.746949 GAGCTCATCTGCACCCCCG 62.747 68.421 9.40 0.00 34.99 5.73
483 484 2.191641 GAGCTCATCTGCACCCCC 59.808 66.667 9.40 0.00 34.99 5.40
484 485 2.202987 CGAGCTCATCTGCACCCC 60.203 66.667 15.40 0.00 34.99 4.95
485 486 2.037620 ATCCGAGCTCATCTGCACCC 62.038 60.000 15.40 0.00 34.99 4.61
486 487 0.879400 CATCCGAGCTCATCTGCACC 60.879 60.000 15.40 0.00 34.99 5.01
487 488 1.497223 GCATCCGAGCTCATCTGCAC 61.497 60.000 20.43 0.00 34.99 4.57
488 489 1.227468 GCATCCGAGCTCATCTGCA 60.227 57.895 20.43 0.00 34.99 4.41
489 490 1.222766 CTGCATCCGAGCTCATCTGC 61.223 60.000 15.40 17.71 34.99 4.26
490 491 0.388294 TCTGCATCCGAGCTCATCTG 59.612 55.000 15.40 8.20 34.99 2.90
491 492 1.340088 ATCTGCATCCGAGCTCATCT 58.660 50.000 15.40 0.00 34.99 2.90
492 493 3.188492 CATATCTGCATCCGAGCTCATC 58.812 50.000 15.40 0.00 34.99 2.92
493 494 2.093606 CCATATCTGCATCCGAGCTCAT 60.094 50.000 15.40 0.00 34.99 2.90
494 495 1.274447 CCATATCTGCATCCGAGCTCA 59.726 52.381 15.40 0.00 34.99 4.26
495 496 1.547820 TCCATATCTGCATCCGAGCTC 59.452 52.381 2.73 2.73 34.99 4.09
496 497 1.637338 TCCATATCTGCATCCGAGCT 58.363 50.000 0.00 0.00 34.99 4.09
497 498 2.687700 ATCCATATCTGCATCCGAGC 57.312 50.000 0.00 0.00 0.00 5.03
498 499 4.092529 CGAAAATCCATATCTGCATCCGAG 59.907 45.833 0.00 0.00 0.00 4.63
499 500 3.996363 CGAAAATCCATATCTGCATCCGA 59.004 43.478 0.00 0.00 0.00 4.55
500 501 3.996363 TCGAAAATCCATATCTGCATCCG 59.004 43.478 0.00 0.00 0.00 4.18
501 502 5.413833 ACATCGAAAATCCATATCTGCATCC 59.586 40.000 0.00 0.00 0.00 3.51
502 503 6.492007 ACATCGAAAATCCATATCTGCATC 57.508 37.500 0.00 0.00 0.00 3.91
503 504 6.889301 AACATCGAAAATCCATATCTGCAT 57.111 33.333 0.00 0.00 0.00 3.96
504 505 6.698008 AAACATCGAAAATCCATATCTGCA 57.302 33.333 0.00 0.00 0.00 4.41
505 506 6.974622 ACAAAACATCGAAAATCCATATCTGC 59.025 34.615 0.00 0.00 0.00 4.26
506 507 7.645340 GGACAAAACATCGAAAATCCATATCTG 59.355 37.037 0.00 0.00 0.00 2.90
507 508 7.467267 CGGACAAAACATCGAAAATCCATATCT 60.467 37.037 0.00 0.00 0.00 1.98
508 509 6.632834 CGGACAAAACATCGAAAATCCATATC 59.367 38.462 0.00 0.00 0.00 1.63
509 510 6.494842 CGGACAAAACATCGAAAATCCATAT 58.505 36.000 0.00 0.00 0.00 1.78
510 511 5.675071 GCGGACAAAACATCGAAAATCCATA 60.675 40.000 0.00 0.00 0.00 2.74
511 512 4.732784 CGGACAAAACATCGAAAATCCAT 58.267 39.130 0.00 0.00 0.00 3.41
512 513 3.610585 GCGGACAAAACATCGAAAATCCA 60.611 43.478 0.00 0.00 0.00 3.41
513 514 2.914838 GCGGACAAAACATCGAAAATCC 59.085 45.455 0.00 0.00 0.00 3.01
514 515 3.821841 AGCGGACAAAACATCGAAAATC 58.178 40.909 0.00 0.00 0.00 2.17
515 516 3.915437 AGCGGACAAAACATCGAAAAT 57.085 38.095 0.00 0.00 0.00 1.82
516 517 3.065510 TGAAGCGGACAAAACATCGAAAA 59.934 39.130 0.00 0.00 0.00 2.29
517 518 2.614520 TGAAGCGGACAAAACATCGAAA 59.385 40.909 0.00 0.00 0.00 3.46
518 519 2.214347 TGAAGCGGACAAAACATCGAA 58.786 42.857 0.00 0.00 0.00 3.71
519 520 1.872388 TGAAGCGGACAAAACATCGA 58.128 45.000 0.00 0.00 0.00 3.59
520 521 2.900122 ATGAAGCGGACAAAACATCG 57.100 45.000 0.00 0.00 0.00 3.84
591 592 6.231211 GGAGTGAGTCTGATTTACCTTTTCA 58.769 40.000 0.00 0.00 0.00 2.69
603 604 1.979155 CTGGCGGGAGTGAGTCTGA 60.979 63.158 0.00 0.00 0.00 3.27
604 605 2.575993 CTGGCGGGAGTGAGTCTG 59.424 66.667 0.00 0.00 0.00 3.51
990 1035 0.543749 CCAGGTCCATCTCCTCCAAC 59.456 60.000 0.00 0.00 32.37 3.77
991 1036 0.417437 TCCAGGTCCATCTCCTCCAA 59.583 55.000 0.00 0.00 32.37 3.53
1082 1127 0.979709 CTGCTCCATCTCCTCCACCA 60.980 60.000 0.00 0.00 0.00 4.17
1245 1290 2.352229 CCACACGCGTTGCACAAG 60.352 61.111 10.22 0.00 0.00 3.16
1370 1415 3.263170 GGGCCAAACATTACCTCCATTTT 59.737 43.478 4.39 0.00 0.00 1.82
1425 1470 2.971598 CGGCTCCACAGTCCCCAAT 61.972 63.158 0.00 0.00 0.00 3.16
1430 1475 4.459089 GCTCCGGCTCCACAGTCC 62.459 72.222 0.00 0.00 35.22 3.85
1450 1495 1.609501 TCTGAGACCCCAACTCCGG 60.610 63.158 0.00 0.00 33.95 5.14
1456 1501 1.257743 CTCTTCGTCTGAGACCCCAA 58.742 55.000 7.07 0.00 33.68 4.12
1884 1929 2.927856 TGCAGCTCCGGGGAGAAA 60.928 61.111 18.75 0.00 44.53 2.52
1985 2030 1.202879 TCTCCAAACGGCAGAAACCAT 60.203 47.619 0.00 0.00 0.00 3.55
2020 2065 4.595762 AGAGCAGTACGTCTTTAAACCA 57.404 40.909 0.00 0.00 0.00 3.67
2032 2077 7.806014 GCTAATGAAGTGTAGATAGAGCAGTAC 59.194 40.741 0.00 0.00 0.00 2.73
2079 2124 4.202430 ACCAAAACCAAGGTACTCCTACTG 60.202 45.833 0.00 0.00 44.35 2.74
2134 2180 5.798125 TTGGAACATTGACCATAAAAGCA 57.202 34.783 7.79 0.00 39.30 3.91
2310 2356 7.179269 AGGCCACAAAGGTATTTATCTAAACA 58.821 34.615 5.01 0.00 40.61 2.83
2364 2410 8.579850 TGCAATGTATGTCTTAAAATTCCTCT 57.420 30.769 0.00 0.00 0.00 3.69
2407 2453 7.935755 AGTACATGCTATCTCAATGCTGTAATT 59.064 33.333 0.00 0.00 0.00 1.40
2408 2454 7.448420 AGTACATGCTATCTCAATGCTGTAAT 58.552 34.615 0.00 0.00 0.00 1.89
2409 2455 6.820335 AGTACATGCTATCTCAATGCTGTAA 58.180 36.000 0.00 0.00 0.00 2.41
2457 2773 2.068837 TTCCACGGTACTGTAAAGCG 57.931 50.000 7.11 1.06 43.15 4.68
2559 2875 5.782893 ATTTTGAGAAATTGTTGACCCGA 57.217 34.783 0.00 0.00 31.48 5.14
2617 2933 7.092748 ACTAGGGAGCATAGTGTTATAGAGA 57.907 40.000 0.00 0.00 32.27 3.10
2641 2957 6.042552 TCAATTGAATGTGGGGCTCTTTAAAA 59.957 34.615 5.45 0.00 0.00 1.52
2654 2970 7.031372 CCAATGTTAGACCTCAATTGAATGTG 58.969 38.462 9.88 0.00 0.00 3.21
2687 3009 8.364142 TGAGAAATTGTTTATCGGGTCAAAATT 58.636 29.630 0.00 0.00 33.74 1.82
2697 3019 9.503427 GGGAATACTTTGAGAAATTGTTTATCG 57.497 33.333 0.00 0.00 33.74 2.92
2701 3023 9.710900 GAATGGGAATACTTTGAGAAATTGTTT 57.289 29.630 0.00 0.00 0.00 2.83
2742 3064 4.344102 GGAAGCATAGTGTATGGTACTCCA 59.656 45.833 10.15 0.00 45.32 3.86
2743 3065 4.589374 AGGAAGCATAGTGTATGGTACTCC 59.411 45.833 8.07 8.07 45.32 3.85
2744 3066 5.793030 AGGAAGCATAGTGTATGGTACTC 57.207 43.478 0.00 0.00 45.32 2.59
2745 3067 7.857404 ATTAGGAAGCATAGTGTATGGTACT 57.143 36.000 0.00 4.45 45.32 2.73
2746 3068 8.904099 AAATTAGGAAGCATAGTGTATGGTAC 57.096 34.615 0.00 0.00 45.32 3.34
2919 3252 6.262049 GCCTGGTCAAAATTGTAAACCAAATT 59.738 34.615 6.64 0.00 39.40 1.82
2941 3274 4.599047 TGATTTGAAAAATCGTTGGCCT 57.401 36.364 3.32 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.