>input_sequence_64022
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----ATGGACCTGGAGCCAGCGGTGATGGGGGGCCGTCGGGCCCAGGAGGAGCTCGAGTCGCTGCCCAACAAGGACGCAT
TCCCGATGGTGGAGGAGATGGAGCAGGAACCAGCGGTGATGGGGCCTCGGACGAAGGTGGTGCGCCGGCGGCGCGGGGCG
ATGTCGGCTAGGCCGGGGCAGCGGCGGTGCAGGCACTGCGGGACGACGAAGACGCCGCAGTGGCACAGGGGACCAGCGGG
CTGCCGCACCTTGTGCAACGCGTGTGGCGTGCGGTACAAGAGGGAACGCCCGGAGCATGCACCCTCTGATCAGGCAGTAC
GCGTTTTCCGCATGCTGTTCCTTTTGGTCAGGGAATTTGGGTTGCTTGGTAGGGAAAATGGAGGTAATGTTTGGCCCTTG
CAGGGACTGGAGGTTGGCGGCGGCGAGGCATTGGGGACTGTGGAGCCGGAGCCGCCGGAGTTGGGGTCTCAGACGAAGAG
GGTGGTGCGCCAGCGACGGACTTTGGCGTGGCCTCCGACTCCGACAGCGGCTGAGCCGGAGCAGCAGTGGTGCCAGCACT
GCGGGAAGATGAAGAAGCCGCAATGGCGCGAGGGGGCGGCTGCGGAGGAGGAGCGGGAGTGGCTGCCGAACAAGAACGTC
CCGGCGGTGGAGACAATGGAGCCGAAGCCGTCGGTGGTGGCGCCTCGGACGGAGGGGGCGGCGCGACGTGCAGTGGCGTC
GCCGGCGCTTTCTGACCTGGGGCAGCGGCTGTGCCGGCACTGTGGGACGGCGGAGACGCCGCAATGGCGCCAGGGACCGG
AGGGCCGCAAGACGCTGTGCAATGCGTGCGGCATGCGGTACCGGGCCGGCCGCCTGGTGCCGGAGTACCGGCCGCTGCGC
AGCCCCACTTTCTCCCCGGAGCTGCACTCCAACAGGCACAGCCGCGTCGCCCAGATGCGCCCTGCCGGGGCTCCTCATCC
ACTGCCGCCGGACAAGTGA-------------------------------------------------------------
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>chr1D_1_TraesCS1D01G143500
GCTCTAGGCTGGTGATGTAATTTTTTTATTTTTTATTTGCAGAGGTAAGTTTAAAACGTTGCAGTAGGATTTTTTTTTCC
TACTGTTTTCTTGTTAACAAACAAAAAGTGATGTTGAGTAGGGCGTTTCGGTGCCTAGGCTCATCTGCACCCGGTTAGAA
AACAAATCGTAAAAAAGTCGAAAAAAATTCAAAAAATTCTAAAAAAATTTGTGCGGTAGACAATTTGACGCGTGAGGCTC
GCTCCGAAATTCAAGTCATTTGGACATCTGGGAAGCTCTCAGCAAAAAAGACAAATCAGATCAAAACAATACATGAACAG
TAAACATTTTTACAGACCCCCAATCTGTATTTTTGCTGAGAGCTCCTCATATGTCCAAATGACATGAAAATTGGAGTGGA
CCTCACGCATCAAATTGTCTATCACACAAAAAAATGGAATTTTTTGAATTTTGCTAGTATTTGTTTTGATTTTTTTCGTC
AGCGGGGGTGCAGATGAGCTCGGATGCAGATATGGATTTTCGATGTTTTGTCCGCTTCATTCGTTTTTACGGTGGCCATC
TCCAAATTCCAAACTCGCGCGTCCAACGAAATGAAAAGGTAAATC----AGACTCACTCCCGCCAGCGAACTTCAAAAGA
AGCCCCTTAGCCCACCCA----------------------CCTCACCGACTTACCTTCTCCTAGAAGCCCACCAAGCACA
GAAGTTTCCCCAAACCCTTTCGCGTTCTCCTCTCGGGCTAAGGAAGCAGGCGGCGGCGATGGCGACGGTGGACGGGCTCC
ACGGGGACGCGGTCGTTGACGATCTCCTTTC-TAGCGGCGGCGACCTCCAGTCCTTCTTTGACCAGTTGGTAGGTTTTTC
CTTTCGGTGAGGCTTTTTGGGGGGTCTCGTCGTACGGAATTGGCGATGAAGGTTGGTGCTTGCAGTTGCAGGGGCTGGAG
GCGGCGGCTGGCGGAGG-----------------AGGAGCTCGAGTGGTTGTCCAACAAGGACGCGTTCCCGGCGTTGGA
GGAGATGGACCTGGAGCCAGCGGTGATGGGGGGCCGTCGGGCCCAGGAGGAGCTCGAGTCGCTGCCCAACAAGGACGCAT
TCCCGATGGTGGAGGAGATGGAGCAGGAACCAGCGGTGATGGGGCCTCGGACGAAGGTGGTGCGCCGGCGGCGCGGGGCG
ATGTCGGCTAGGCCGGGGCAGCGGCGGTGCAGGCACTGCGGGACGACGAAGACGCCGCAGTGGCACAGGGGACCAGCGGG
CTGCCGCACCTTGTGCAACGCGTGTGGCGTGCGGTACAAGAGGGAACGCCCGGAGCATGCACCCTCTGATCAGGCAGTAC
GCGTTTTCCGCATGCTGTTCCTTTTGGTCAGGGAATTTGGGTTGCTTGGTAGGGAAAATGGAGGTAATGTTTGGCCCTTG
CAGGGACTGGAGGTTGGCGGCGGCGAGGCATTGGGGACTGTGGAGCCGGAGCCGCCGGAGTTGGGGTCTCAGACGAAGAG
GGTGGTGCGCCAGCGACGGACTTTGGCGTGGCCTCCGACTCCGACAGCGGCTGAGCCGGAGCAGCAGTGGTGCCAGCACT
GCGGGAAGATGAAGAAGCCGCAATGGCGCGAGGGGGCGGCTGCGGAGGAGGAGCGGGAGTGGCTGCCGAACAAGAACGTC
CCGGCGGTGGAGACAATGGAGCCGAAGCCGTCGGTGGTGGCGCCTCGGACGGAGGGGGCGGCGCGACGTGCAGTGGCGTC
GCCGGCGCTTTCTGACCTGGGGCAGCGGCTGTGCCGGCACTGTGGGACGGCGGAGACGCCGCAATGGCGCCAGGGACCGG
AGGGCCGCAAGACGCTGTGCAATGCGTGCGGCATGCGGTACCGGGCCGGCCGCCTGGTGCCGGAGTACCGGCCGCTGCGC
AGCCCCACTTTCTCCCCGGAGCTGCACTCCAACAGGCACAGCCGCGTCGCCCAGATGCGCCCTGCCGGGGCTCCTCATCC
ACTGCCGCCGGACAAGTGAAGTGTTGACAATGGTTTCTGCCGTTTGGAGATTTATTTATGTTTTTGGTTTAAAGACGTAC
TGCTCTATCTACACTTCATTAGCACAAAATGATTTAGAATAAGCAGTAGGAGTACCTTGGTTTTGGTGGTAAAGGGCATC
CAGTTTTT-GGTGGTTCTTTGCTTTTATGGTCAATGTTCCAATAAGCAGGAACTTGCTTGATCTTTGTCAACTTACGCTT
CACATTATTTATGTGTTTCTGTTGCAATTAAGTAGACATGAGATGCATGATGTGCTTTAGACCTTTAGTGCTTCTTGTTA
TAGCGCTAATGGTTTGAGACAAATCTCAAACTTCATGTTTAGATAAATACCTTTGTGGCCTTTGAGTTCCAGGGATAAAC
AGTTCCGATAGAGGAATTTTAAGACATACATTGCATAGGAATAGAAAAAAAAAATTACAGCATTGAGATAGCATGTACTC
CTTCAGTAAATAAATATAAG------------------------------------------------------------
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--------------------------------------------------AGCGCTTTACAGTACCGTGGAATCCTCTAT
AACACTATGCTCCTTAGTTTAAAGAGCCACATTTAATTAAGATCTCTAATTAGAATTGGATCATTCGATTTTGATCGGGT
CAACAATTTCTCAAAATTTTCTTATTCAATTCTTTTATATTATACACTATGTTCTCTATAACACTATGCTCCCTAGTTTT
AAAGAGCCCCACATTCAATTGAGGTCTAAC------ATTGGGTCACCCAATTTTGACCCGATAAACAATTTCTCAAAGTA
TTCCCATTCAATTCTTTTAGAATTGGAGTACCATACACTATGCTTCCTAATTTTTAAGGCCTCACAGTTAATTGAGGTAT
TCAATTTAGAATTGGGTCACCCGATTTTGACCGGGTCAACAATTTCTCAAACTCTCCCATTCAGTTTTTG--TAATTCAC
TATGTTCCCTAATTTTGAAGCTAT---------TTGAAACATTCAATTTTGAATTTGGTTTACAATTTTGACCAGGCCAA
CGA-TTTTTCAAATCAATCAGCAGCAAC
>chr1A_522
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-----------------------------------------GATGTCTTGTCCGCTTCATTCGTTTTTACGGTGGCCATC
TCCAAATTCCAAACTCGCGCGTCCAACGAAAAGAAAAGGTAAAAATCATAAACCCACTCCCGCCAGCGAACTTCAAAAGA
AGCCCCTTAGCCCACCCATGTGAATGCTGTGTGTGGGTCGCCTCACCGACTTACCTTCTCCTAGAAGCCCACCAAGCACA
GAAG-------------TTTCGCGTTCTCCTCTCGGGCTAAAGAAGCAGGCGG------------------ACGGGCTCC
ACGGCGAGGCGGTCGTTGACGATCTCCTTTTGTAGCGGCGGCGACCTCCAGTCCTTCTTTGACCAGTTGGTAGGTTTTTC
CTTTCGGTGAGGCTTTTTGGGGGGTCTCGTCGTACGGAATCGGCGATGAAGGTTGGTGCTTGCAGTTGCAGGGGCTGGAG
GTGGCGGCTTGCGGAGGCGGCGAGGGGGCGGAGGAGGAGCTCGAGTGGCTGTCCAACAAGGACGCGTTCCCGGCAGTGGA
GGAGATGGACCTGGAGCTAGCGGTGATGGGGGCCCGTCGGGCCCAGGAGGAGCTCGAGTCGCTGCCCAACAAGGACGCAT
TCCCGACGGTGGAGGAGATGGAGCAGGAACCAGCGGTGATGGGGTCTCGGAGGAAGGTGGTGCGCCGGCGGCGCGGGGCG
ATGTCGGCTAGGCCGGGGCAGCGGCGGTGCAGGCACTGCGGGACGACGAAGACGCCGCAGTGGCACAGGGGGGCAGCGGG
CTGCCGCACGTTGTGCAACGCGTGTGGCGTGCGGTACAAAAGGGAACGCCCGGAGTATGCACCCTCTCATCAGGAGGTAC
GCGTTTTCCGCACGCTGTTCCTTTTGGTCAGGGAATTGGGGTTGCTTGGTAAGGGAAATGGAGGTAATGTTTGGCTCTTG
CAGGGACTGGAGGTTGGCGGCGGCGAGGCGTTGGAGACTATGGAGGCGGAGCCGTCGGAGGTGGGGTCTCAGACGAAGAG
GGTGGTGCGCCAGCGACGGACTTTGGCGTGGC------CTCCGACAGCGGCTGAGCCGGAGCAGCGGTGGTGCCAGCACT
GCGGGAAGATGAAGAAGCCGCGATGGCGCGAGGGGGCGGCTGCGGAGCAGGAGCGGGAGTGGCTGTTGAACAAGAACGTC
CCGGCGGTGGAGACAGTGGAGCCGAAGCCATCGGTGGTGGCGCCTCGGACGGAGGGG---------------GTGGTGTC
GCCGGCGCTTTCTGACCTGGGGCAGCGGCTGTGCCGGCACTGTGGGACGGCGGAGACGCCGCAATGGCGCGAGGGACCGG
AGGGCCGCAAGACGCTGTGCAATGCGTGCGGCGTGCGGTACAGGGCCGGCCGCCTGGTGCCGGAGTACCGGCCGCTGCGC
AGCCCCACCTTCTCCCCGGAGCTGCACTCCAACAGGCACAGCCGCGTCGCCCATATGCGCCCTGCCGGGGCTCCTCATCC
ACTGCCGCCGGACAAGTGAAGTGTTGACAGTGGTTTCTGCCGTTTGGAGATTTATTTATGTTTTGGGTTTAAAGACCTAC
TGCTCTATCTACACTTCATTAGCACAAAATGATTTAGAATAAGTAGTAGGAGTACCTTGGTTTTGGTGGTAAAGGACATC
CAGTTTTT-GGTGGTTCTTGGCTTTTATGGTCAATGTTCCAATAAGCAGGAACTTGCTTGATCTTTGTCAACTTACGCTT
CACATTATTTATGTGTTTCTGTTGCAATTAAGTAGACATGAGATGCATGATGTGCTTTACACCTTTAGTGCTTCTTGTTA
TAGCGCTGATGGTTTGAGCCCAATCTCAAACTTCACGTTTAGATAAATACCTTTGTGGCCTTTGAGTTCCAGGGATAAAC
AGTTCCGATCGAGGAATTTTAAGACATACATTGCATATGAAAGGAAAAAAAA---TACAGCATTGAGATAGCATGTACTC
CCTCCGTAAATAAATATAAG------------------------------------------------------------
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--------------------------------------------------AGTGCTCCACAGTACCATGAAATCATCTAT
AACACTATGC--------------AGCCACATTTAATTAAGGTCTCCAATTAGAATTGGATCATCTGATTTTAACCGGGT
CAATAATTTCTCAAAAAAAAAATC--CAATTCTTTTATATTATACACTGCATCCTCTATAACACTATGTTTCCTAGATTT
AAAGAGCCC-ACATTCAATAGAGGTCTTCAATTAGAATTGGGTTACCCGATTTTCACCGGGTCAACAATTTCTCAAAGTT
TTCCCATTTAATTCTTTTATAC------TACTGTACACTATGCTTCCTAATTTTTAAGGCCTCGCAATTAATTAAGGTAT
TCAATTTAGAATTGGGTCACCCGATTTTGACCGGGTCAACAATTTCTCAAACTCTCTCATTCAGTTTTTTTTTAATTCAC
TATGTTCTCTAATTTTGAAGCCCTTTCATTCAATTGAGACATTCAATTTTGGATTTGGTTTACAATTTTGACCGGGCCAA
TGATTTTTTCAAATCAATCAGCAGCAAC
>chr1B_522
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-----------------------------------------GATGTTTTGTCCGCTTCATTCGTTTTTACGGTGGCCATC
TCCAAATTCCAAACTCGCGCGTCCAACGAAAAGAAAAGGTA--AATCATAGACTCACTCCCGCCAGCGAACTTCAAAAGA
AGCCCCTTAGCCCACCC---------------------------ACCGACATACCTTCTCCTAGAAGCCCACCAACTACA
GAAGTTTCCCCAAACCCTTTCGCGTTCTCCTCTCGGGCTAAAGAAGCAGGCGGCGGCGGTGGCGACGGTGGACGGGCTCC
ACGGCGAGGCGGTCCTTGACGATCTCCTCTC-TAGCGGCGGCGACCTCCAGGCCTTCTTTGACCAGTTGGTATGATTTTC
CTTTCGGTGAGGATTTTTGGGGGGGTTTCTCGTACGGAATTAGCGATGAAGGTTGGTGCTTGCAGTTGCAGGGGCTGGAG
GGGGCGGCTGGCGGAGGCGGCGAGGGGGCGGAGGAGGAGCACGAGTGGCTGTCCAACAAGGACGCGTTCCCGGCCGTGGA
GGAGATGGACCTGGAGCCAGCGGTGATGGGGGGCCGTCGGGCCCAGGAGGAGCTCGAGTCGCTGCCCAACAAGGACGCAT
TCCCGACGGTGGAGGAGATGGAACAGGAACCAGCGGTGATGGGGCCTCGGACGAAGGTGGTGCGCCGGCGGCGCGGGGCG
ATGGCGGCTAGGCCGGGGCAGCGGCGGTGCGGGCACTGCGGGACGACGAAGACGCCGCAGTGGCACAGGGGACCAGCGGG
CTGCCGCACGTTGTGCAACGCGTGTGGCGTGCGGTACAAGAGGGAACACCCGGAGCATTCACCCTCTGATCAGGCGGTAC
GCGGTTTCAGCATGCTGTTCCTTTTGGTCAGGAAATTTGGGTTGCTTGGTAGGGGAAATGGAGGTAATGTTTGGCTCTTG
CAGGGACTGGAGGTTGGCGGCGGCGAGGCGTTGGAGACTATGGAGCCGGAGCCGTCGGAGGTGGGGTCTCAGACGAAGAG
GGTGGTGCGCCAGCGACGAACTTTGGCGTGGC------CTCCGACAGCGACTGGGCCGGAGCAGCAGTGGTGCCAGCACT
GCGGGAAGATGAAGAAGCCGCAATGGCGTGAGGGAGCGGCTGCGGAGGAGGAGCGGGAGTGGCTGCCGAACAAGAACCTC
CCGGCGGTGGAGACAATGGAGCCGA------------------------CGGAGGGGGCGGCGCGACGTGCAGTGGCATC
GCCGGCGCTTTCTGGCCTGGGGCAGCTGCTGTGCCGGCACTGTGGGACGGCAGAAACGCCGCAATGGCGCGAGGGACCGG
ACGGCCGTAAGATGCTGTGCAATGCGTGCGGCGTGCGGTACAGGGCCGGCCGCCTGGTGCCGGAGTACCGGCCGCTGCGC
AGCCCCACCTTCTCCCCGGAGTTGCACACCAACAGGCACAGCCGCGTCGCCCAGATGCGCTCTGCCAGGGCTCCTCATCC
ACTGCCGCCGGACAAGTGAAGTGTTGACATTGGTTTCTGCCGTTTGGAGATTTATATATGTTTTGGGTTTAAAGACCTAC
TGCTCCATCTACACTTGATTAGCACAAAATGATTTAGAATAAGTAGTAGGAGTACCTTGGTTTTGGTGGTAAAGGGCATC
CAGTTTTTTGGTGGTTCTTGGCTTTTATGGTCAATGTTCCAATAAGCAGGAACTTGCTTGATCTTTGTCAACTTACGCTT
CACATTATTTATGTGTTTCTGTTGCAATTAAGTAGACATGAGATGCATGGTGTGCTTTAGACCTTTAGTGCTGTGTCAAA
AAACGTCTTACATTATGGGACGAAGGGAG----------TAGATAAATACCTTTGTGGCCTTTGAGTTCGAGGGATAAAC
AGTTCCGATCGAGGAATTC-AAGACATACATTTTATAGGAATAGAAAAAAAA---TACAGCATTGAGATAGCATGTACTC
CTTCCGTAAGTAAATATAAGGTTGGTCGTAATGAAAGTATCGTAGGTAGTATCATGCATGCTAACTAGGCAAATTTGATG
AGATGACATAGAATTAAATGAAGAAATAGTGGGGTGAGTATCATATCATGATACCGGATCATATTAAATGATGTGCTAAT
ATGTGTCATGCATAGCAATGAATGAAGTTATCTATTATACTAACACATGATACTATGCACTACAGGTGTAGTATCATATA
CATGATACATGATACTAGTATATGATACTCACCATTACGATCAGCCTAAGAGTGCTTTACAGTACCGTGGAATCCTCTAT
AACACTACGCTCCTTAGTTTAAAGAGCCATATTTAATTAAGGTCTCCAATTAGAATTGGATCGCCCGATTTTGACCGGGT
CAACAATTTCTCAAAATTTTCTTATTCAATTCTTTTATATTATACACTATGTCCTTTATAACACTATACTCCGTAGGTTT
AAATATCCC-ACATTCAATTGAGGTCCTCAATTAGAATTAGGTCACCCGTTTTTGACTGGGTCAAGAATTTCTCAAAGTT
TTCCTATTCAATTCTTTTATAC------TACTATACACTATGCTTCCTAATTTTTAAGGCCTCACAATTAATTGAGGTAT
TCAATTTAGAATTAGGTCACCCGATTTTGAGCAGATCAACAA-TTCTCAAACTCTTCCATTCAGTTTTT--TTAATTCAC
TATGTCCCCTAATTTTGAAGCTCTTTCATTCAATTGAGACGTTCAATT-TGGATTTGGTTTACAATTTTGGCCGAGCCAA
CAA-TTTTTCAAATCAATCAGCAGCAAC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
-------------------------------S-----------SS-----------------------------------
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-----------------------------------------S----------------S---------------------
----S--S------------------------------------------------------------------------
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-S----------------------------------------------S-------------------------SS----
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------S-------------------------------------------------------------------------
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---------S-----------------------------------------------------------------S----
------------------------------------------------------S--------------------S----
-----------------------------S----S----S--------------S-----S-------------------
--------------------------------SSSSSS------------------------------------------
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-----------------------------S--------------------------------------------------
----------------------------------------------------------------------S---------
--------------------------------S--------S--------------------------------------
--------S-----------------------------------------------------------------------
-----------------------------S----------------------------------S-----------S---
-------------------------------------------S------------------------------------
-------------------S------------------------------------------------------------
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-------S----------S-S--------------S--------------------------------------------
---------S------------------------------------------SSS-------------------------
----S---------------------------------------------------------------------------
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----------------------------------------------------S---------------------------
-----------------------------------------S----S-----------------S---------S-----
----------------------------------------------------S-----------------------S---
---------S-----------------SSS------------------S---------S-S-S----------------S
-------------------S-SSSSSSS---S----------------------------------S-------------
---------------------------------------------------------------------S----------
----------------------S--------------S-------------S---------------------S------
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>forward_254
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--------------------------------------------------------------------------AGGCTC
GCTCCGAAATTCAA------------------------------------------------------------------
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>reverse_1127
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------TGGTGGAGGAGATGGAGCAG------------------------------------------------------
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>forward_255
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---------------------------------------------------------------------------GGCTC
GCTCCGAAATTCAAG-----------------------------------------------------------------
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>reverse_2030
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-----------------------------ATGGTTTCTGCCGTTTGGAGA------------------------------
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