Multiple sequence alignment - TraesCS1D01G143200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G143200 chr1D 100.000 3477 0 0 1 3477 198756242 198752766 0.000000e+00 6421.0
1 TraesCS1D01G143200 chr1D 87.931 290 31 4 472 758 326787975 326788263 4.300000e-89 339.0
2 TraesCS1D01G143200 chr1A 93.490 1828 75 16 768 2568 249148534 249146724 0.000000e+00 2676.0
3 TraesCS1D01G143200 chr1A 85.774 478 41 12 1 458 249149015 249148545 6.750000e-132 481.0
4 TraesCS1D01G143200 chr1B 93.873 1420 53 16 759 2159 278633065 278631661 0.000000e+00 2109.0
5 TraesCS1D01G143200 chr1B 88.596 570 34 17 2148 2716 278631627 278631088 0.000000e+00 664.0
6 TraesCS1D01G143200 chr1B 87.475 495 53 7 2718 3210 647195000 647195487 2.340000e-156 562.0
7 TraesCS1D01G143200 chr1B 87.931 290 31 4 470 756 27977875 27977587 4.300000e-89 339.0
8 TraesCS1D01G143200 chr1B 88.929 280 24 3 1 279 278633557 278633284 4.300000e-89 339.0
9 TraesCS1D01G143200 chr1B 87.730 163 11 5 312 467 278633214 278633054 7.670000e-42 182.0
10 TraesCS1D01G143200 chr1B 94.545 55 3 0 12 66 308581474 308581528 6.180000e-13 86.1
11 TraesCS1D01G143200 chr7D 91.537 709 57 3 2769 3477 101307503 101306798 0.000000e+00 974.0
12 TraesCS1D01G143200 chr7D 79.828 233 22 12 3114 3345 543352144 543351936 2.800000e-31 147.0
13 TraesCS1D01G143200 chr2A 87.037 486 48 13 2718 3199 773216184 773216658 5.110000e-148 534.0
14 TraesCS1D01G143200 chr2A 89.958 239 22 1 3239 3477 773216655 773216891 1.210000e-79 307.0
15 TraesCS1D01G143200 chr2A 97.222 36 1 0 2681 2716 717197649 717197614 1.040000e-05 62.1
16 TraesCS1D01G143200 chr2A 92.308 39 2 1 2399 2437 736364953 736364916 2.000000e-03 54.7
17 TraesCS1D01G143200 chr2B 91.273 275 22 2 2988 3262 773113488 773113216 1.180000e-99 374.0
18 TraesCS1D01G143200 chr2B 85.000 200 24 5 2718 2915 773114703 773114508 7.610000e-47 198.0
19 TraesCS1D01G143200 chr2B 90.769 65 4 2 4 66 693754312 693754248 6.180000e-13 86.1
20 TraesCS1D01G143200 chr2B 92.727 55 4 0 12 66 91336292 91336238 2.880000e-11 80.5
21 TraesCS1D01G143200 chr2B 97.222 36 1 0 2681 2716 28606105 28606070 1.040000e-05 62.1
22 TraesCS1D01G143200 chr7B 89.041 292 28 4 470 758 634277094 634277384 3.300000e-95 359.0
23 TraesCS1D01G143200 chr7B 94.545 55 3 0 12 66 568003090 568003036 6.180000e-13 86.1
24 TraesCS1D01G143200 chrUn 89.236 288 26 4 469 754 404263996 404263712 4.270000e-94 355.0
25 TraesCS1D01G143200 chrUn 88.542 288 28 4 469 754 474749503 474749787 9.240000e-91 344.0
26 TraesCS1D01G143200 chr6B 88.591 298 26 7 470 762 693906285 693905991 4.270000e-94 355.0
27 TraesCS1D01G143200 chr7A 88.850 287 30 2 470 754 269125289 269125003 5.520000e-93 351.0
28 TraesCS1D01G143200 chr7A 85.714 259 29 7 2718 2974 38052885 38053137 2.060000e-67 267.0
29 TraesCS1D01G143200 chr5B 88.889 288 27 4 469 754 32065519 32065235 1.990000e-92 350.0
30 TraesCS1D01G143200 chr2D 88.014 292 31 4 470 758 625567358 625567068 3.320000e-90 342.0
31 TraesCS1D01G143200 chr2D 92.308 39 2 1 2399 2437 605179517 605179480 2.000000e-03 54.7
32 TraesCS1D01G143200 chr3A 88.211 246 26 2 2718 2962 535716377 535716620 1.220000e-74 291.0
33 TraesCS1D01G143200 chr3A 83.983 231 35 2 3238 3467 608745028 608744799 1.620000e-53 220.0
34 TraesCS1D01G143200 chr3A 90.411 73 3 2 1 73 708324073 708324005 3.700000e-15 93.5
35 TraesCS1D01G143200 chr3B 82.403 233 26 10 3242 3464 33954480 33954253 4.580000e-44 189.0
36 TraesCS1D01G143200 chr4B 78.512 242 46 6 2718 2959 458303880 458304115 1.670000e-33 154.0
37 TraesCS1D01G143200 chr3D 91.304 69 3 1 1 69 573691890 573691825 1.330000e-14 91.6
38 TraesCS1D01G143200 chr5A 100.000 30 0 0 1705 1734 618639316 618639287 4.850000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G143200 chr1D 198752766 198756242 3476 True 6421.0 6421 100.0000 1 3477 1 chr1D.!!$R1 3476
1 TraesCS1D01G143200 chr1A 249146724 249149015 2291 True 1578.5 2676 89.6320 1 2568 2 chr1A.!!$R1 2567
2 TraesCS1D01G143200 chr1B 278631088 278633557 2469 True 823.5 2109 89.7820 1 2716 4 chr1B.!!$R2 2715
3 TraesCS1D01G143200 chr7D 101306798 101307503 705 True 974.0 974 91.5370 2769 3477 1 chr7D.!!$R1 708
4 TraesCS1D01G143200 chr2A 773216184 773216891 707 False 420.5 534 88.4975 2718 3477 2 chr2A.!!$F1 759
5 TraesCS1D01G143200 chr2B 773113216 773114703 1487 True 286.0 374 88.1365 2718 3262 2 chr2B.!!$R4 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 672 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.0 0.0 0.0 0.00 3.01 F
669 718 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.0 0.0 0.0 31.08 4.26 F
675 724 0.325296 TTCGGAGGTGCTCATAGGGT 60.325 55.0 0.0 0.0 31.08 4.34 F
691 740 0.461339 GGGTAGGGTATGCGTGTGTG 60.461 60.0 0.0 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2167 2289 0.463204 CCGAGGATGCAGTGATCAGT 59.537 55.000 0.00 0.0 0.00 3.41 R
2234 2356 1.815840 GCCTCGAGCCTTTACCTGC 60.816 63.158 6.99 0.0 34.35 4.85 R
2339 2461 1.878953 CACACGGTGTAAAGCCTCTT 58.121 50.000 14.30 0.0 0.00 2.85 R
2679 2801 2.926838 GCGTCAGCCTCTTCTCTAAAAG 59.073 50.000 0.00 0.0 37.42 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 0.678395 AGAGCACTGGCATATCTCCG 59.322 55.000 0.00 0.00 44.61 4.63
172 174 9.577110 ACTTGAGATTAATTATTGCATGTTGTG 57.423 29.630 0.00 0.00 0.00 3.33
279 281 1.107945 TCGATGGACAGATGCGGTAA 58.892 50.000 0.00 0.00 0.00 2.85
281 283 1.470805 CGATGGACAGATGCGGTAACA 60.471 52.381 0.00 0.00 0.00 2.41
282 284 2.627945 GATGGACAGATGCGGTAACAA 58.372 47.619 0.00 0.00 0.00 2.83
283 285 2.779755 TGGACAGATGCGGTAACAAT 57.220 45.000 0.00 0.00 0.00 2.71
284 286 2.627945 TGGACAGATGCGGTAACAATC 58.372 47.619 0.00 0.00 0.00 2.67
285 287 1.940613 GGACAGATGCGGTAACAATCC 59.059 52.381 0.00 0.00 31.25 3.01
287 289 1.559682 ACAGATGCGGTAACAATCCCT 59.440 47.619 0.00 0.00 31.25 4.20
288 290 2.213499 CAGATGCGGTAACAATCCCTC 58.787 52.381 0.00 0.00 31.25 4.30
289 291 1.141053 AGATGCGGTAACAATCCCTCC 59.859 52.381 0.00 0.00 31.25 4.30
291 293 1.153025 GCGGTAACAATCCCTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
292 294 1.530283 CGGTAACAATCCCTCCCCC 59.470 63.158 0.00 0.00 0.00 5.40
293 295 1.276140 CGGTAACAATCCCTCCCCCA 61.276 60.000 0.00 0.00 0.00 4.96
294 296 0.257905 GGTAACAATCCCTCCCCCAC 59.742 60.000 0.00 0.00 0.00 4.61
295 297 0.257905 GTAACAATCCCTCCCCCACC 59.742 60.000 0.00 0.00 0.00 4.61
296 298 0.922243 TAACAATCCCTCCCCCACCC 60.922 60.000 0.00 0.00 0.00 4.61
297 299 3.429580 CAATCCCTCCCCCACCCC 61.430 72.222 0.00 0.00 0.00 4.95
298 300 4.799041 AATCCCTCCCCCACCCCC 62.799 72.222 0.00 0.00 0.00 5.40
373 419 4.681744 TGTTGCTGTTCACCAAAGATTTC 58.318 39.130 0.00 0.00 0.00 2.17
384 430 5.637810 TCACCAAAGATTTCATCACGTAGAC 59.362 40.000 0.00 0.00 0.00 2.59
458 507 5.065988 GCATATTCCTTGGCGAACTAGAAAA 59.934 40.000 0.00 0.00 0.00 2.29
459 508 6.238759 GCATATTCCTTGGCGAACTAGAAAAT 60.239 38.462 0.00 0.00 0.00 1.82
460 509 7.682021 GCATATTCCTTGGCGAACTAGAAAATT 60.682 37.037 0.00 0.00 0.00 1.82
464 513 6.411376 TCCTTGGCGAACTAGAAAATTGATA 58.589 36.000 0.00 0.00 0.00 2.15
466 515 5.734855 TGGCGAACTAGAAAATTGATAGC 57.265 39.130 0.00 0.00 0.00 2.97
467 516 5.182487 TGGCGAACTAGAAAATTGATAGCA 58.818 37.500 0.00 0.00 0.00 3.49
468 517 5.645929 TGGCGAACTAGAAAATTGATAGCAA 59.354 36.000 0.00 0.00 38.60 3.91
469 518 5.965918 GGCGAACTAGAAAATTGATAGCAAC 59.034 40.000 0.00 0.00 36.72 4.17
470 519 5.672856 GCGAACTAGAAAATTGATAGCAACG 59.327 40.000 0.00 0.00 36.72 4.10
471 520 6.455113 GCGAACTAGAAAATTGATAGCAACGA 60.455 38.462 0.00 0.00 36.72 3.85
472 521 7.453034 CGAACTAGAAAATTGATAGCAACGAA 58.547 34.615 0.00 0.00 36.72 3.85
473 522 7.422746 CGAACTAGAAAATTGATAGCAACGAAC 59.577 37.037 0.00 0.00 36.72 3.95
474 523 7.073342 ACTAGAAAATTGATAGCAACGAACC 57.927 36.000 0.00 0.00 36.72 3.62
475 524 5.957842 AGAAAATTGATAGCAACGAACCA 57.042 34.783 0.00 0.00 36.72 3.67
476 525 6.325919 AGAAAATTGATAGCAACGAACCAA 57.674 33.333 0.00 0.00 36.72 3.67
477 526 6.149633 AGAAAATTGATAGCAACGAACCAAC 58.850 36.000 0.00 0.00 36.72 3.77
478 527 4.434713 AATTGATAGCAACGAACCAACC 57.565 40.909 0.00 0.00 36.72 3.77
479 528 2.851263 TGATAGCAACGAACCAACCT 57.149 45.000 0.00 0.00 0.00 3.50
480 529 2.422597 TGATAGCAACGAACCAACCTG 58.577 47.619 0.00 0.00 0.00 4.00
481 530 2.224426 TGATAGCAACGAACCAACCTGT 60.224 45.455 0.00 0.00 0.00 4.00
482 531 1.588674 TAGCAACGAACCAACCTGTG 58.411 50.000 0.00 0.00 0.00 3.66
490 539 4.007457 CCAACCTGTGGCTGGATG 57.993 61.111 0.00 0.00 41.72 3.51
491 540 1.679977 CCAACCTGTGGCTGGATGG 60.680 63.158 0.00 6.88 41.72 3.51
492 541 1.075482 CAACCTGTGGCTGGATGGT 59.925 57.895 0.00 0.00 0.00 3.55
493 542 0.540365 CAACCTGTGGCTGGATGGTT 60.540 55.000 0.00 0.00 41.12 3.67
494 543 1.072266 AACCTGTGGCTGGATGGTTA 58.928 50.000 0.00 0.00 38.99 2.85
495 544 0.620556 ACCTGTGGCTGGATGGTTAG 59.379 55.000 0.00 0.00 0.00 2.34
496 545 0.911769 CCTGTGGCTGGATGGTTAGA 59.088 55.000 0.00 0.00 0.00 2.10
497 546 1.134280 CCTGTGGCTGGATGGTTAGAG 60.134 57.143 0.00 0.00 0.00 2.43
498 547 0.911769 TGTGGCTGGATGGTTAGAGG 59.088 55.000 0.00 0.00 0.00 3.69
499 548 0.464554 GTGGCTGGATGGTTAGAGGC 60.465 60.000 0.00 0.00 0.00 4.70
500 549 0.913934 TGGCTGGATGGTTAGAGGCA 60.914 55.000 0.00 0.00 38.56 4.75
501 550 0.475906 GGCTGGATGGTTAGAGGCAT 59.524 55.000 0.00 0.00 0.00 4.40
502 551 1.133668 GGCTGGATGGTTAGAGGCATT 60.134 52.381 0.00 0.00 0.00 3.56
503 552 1.952296 GCTGGATGGTTAGAGGCATTG 59.048 52.381 0.00 0.00 0.00 2.82
504 553 2.684927 GCTGGATGGTTAGAGGCATTGT 60.685 50.000 0.00 0.00 0.00 2.71
505 554 2.947652 CTGGATGGTTAGAGGCATTGTG 59.052 50.000 0.00 0.00 0.00 3.33
506 555 2.301346 GGATGGTTAGAGGCATTGTGG 58.699 52.381 0.00 0.00 0.00 4.17
507 556 2.357154 GGATGGTTAGAGGCATTGTGGT 60.357 50.000 0.00 0.00 0.00 4.16
508 557 3.118038 GGATGGTTAGAGGCATTGTGGTA 60.118 47.826 0.00 0.00 0.00 3.25
509 558 4.446311 GGATGGTTAGAGGCATTGTGGTAT 60.446 45.833 0.00 0.00 0.00 2.73
510 559 4.150897 TGGTTAGAGGCATTGTGGTATC 57.849 45.455 0.00 0.00 0.00 2.24
511 560 3.780294 TGGTTAGAGGCATTGTGGTATCT 59.220 43.478 0.00 0.00 0.00 1.98
512 561 4.141711 TGGTTAGAGGCATTGTGGTATCTC 60.142 45.833 0.00 0.00 0.00 2.75
513 562 4.141711 GGTTAGAGGCATTGTGGTATCTCA 60.142 45.833 0.00 0.00 0.00 3.27
514 563 3.834489 AGAGGCATTGTGGTATCTCAG 57.166 47.619 0.00 0.00 0.00 3.35
515 564 3.378512 AGAGGCATTGTGGTATCTCAGA 58.621 45.455 0.00 0.00 0.00 3.27
516 565 3.133721 AGAGGCATTGTGGTATCTCAGAC 59.866 47.826 0.00 0.00 0.00 3.51
517 566 2.171448 AGGCATTGTGGTATCTCAGACC 59.829 50.000 0.00 0.00 37.49 3.85
518 567 2.092968 GGCATTGTGGTATCTCAGACCA 60.093 50.000 0.00 0.00 44.86 4.02
523 572 1.866015 TGGTATCTCAGACCACCAGG 58.134 55.000 5.95 0.00 42.15 4.45
524 573 1.123928 GGTATCTCAGACCACCAGGG 58.876 60.000 2.83 0.00 44.81 4.45
533 582 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
534 583 2.155065 CCACCAGGGTTCAAGTCCT 58.845 57.895 0.00 0.00 0.00 3.85
538 587 3.329300 CAGGGTTCAAGTCCTGGTG 57.671 57.895 0.00 0.00 44.99 4.17
539 588 0.890996 CAGGGTTCAAGTCCTGGTGC 60.891 60.000 0.00 0.00 44.99 5.01
540 589 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
541 590 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
542 591 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
543 592 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
544 593 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
545 594 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
546 595 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
547 596 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
548 597 0.613260 AGTCCTGGTGCTCGCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
549 598 1.210478 AGTCCTGGTGCTCGCATTTAT 59.790 47.619 0.00 0.00 0.00 1.40
550 599 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
551 600 2.423538 GTCCTGGTGCTCGCATTTATTT 59.576 45.455 0.00 0.00 0.00 1.40
552 601 2.682856 TCCTGGTGCTCGCATTTATTTC 59.317 45.455 0.00 0.00 0.00 2.17
553 602 2.423185 CCTGGTGCTCGCATTTATTTCA 59.577 45.455 0.00 0.00 0.00 2.69
554 603 3.488047 CCTGGTGCTCGCATTTATTTCAG 60.488 47.826 0.00 0.00 0.00 3.02
555 604 2.423185 TGGTGCTCGCATTTATTTCAGG 59.577 45.455 0.00 0.00 0.00 3.86
556 605 2.682856 GGTGCTCGCATTTATTTCAGGA 59.317 45.455 0.00 0.00 0.00 3.86
557 606 3.316308 GGTGCTCGCATTTATTTCAGGAT 59.684 43.478 0.00 0.00 0.00 3.24
558 607 4.202050 GGTGCTCGCATTTATTTCAGGATT 60.202 41.667 0.00 0.00 0.00 3.01
559 608 5.343249 GTGCTCGCATTTATTTCAGGATTT 58.657 37.500 0.00 0.00 0.00 2.17
560 609 5.456822 GTGCTCGCATTTATTTCAGGATTTC 59.543 40.000 0.00 0.00 0.00 2.17
561 610 4.978580 GCTCGCATTTATTTCAGGATTTCC 59.021 41.667 0.00 0.00 0.00 3.13
562 611 5.168526 TCGCATTTATTTCAGGATTTCCG 57.831 39.130 0.00 0.00 42.08 4.30
563 612 4.036262 TCGCATTTATTTCAGGATTTCCGG 59.964 41.667 0.00 0.00 42.08 5.14
564 613 4.051237 GCATTTATTTCAGGATTTCCGGC 58.949 43.478 0.00 0.00 42.08 6.13
565 614 4.290155 CATTTATTTCAGGATTTCCGGCG 58.710 43.478 0.00 0.00 42.08 6.46
566 615 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
567 616 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
568 617 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
569 618 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
570 619 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
581 630 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
582 631 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
583 632 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
584 633 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
585 634 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
586 635 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
587 636 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
588 637 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
589 638 0.615331 GCATTCAGTGGGAGGAGACA 59.385 55.000 0.00 0.00 0.00 3.41
590 639 1.211457 GCATTCAGTGGGAGGAGACAT 59.789 52.381 0.00 0.00 0.00 3.06
591 640 2.356535 GCATTCAGTGGGAGGAGACATT 60.357 50.000 0.00 0.00 0.00 2.71
592 641 3.539604 CATTCAGTGGGAGGAGACATTC 58.460 50.000 0.00 0.00 0.00 2.67
601 650 2.750815 GGAGACATTCCCGTTGACG 58.249 57.895 0.00 0.00 40.37 4.35
602 651 0.245539 GGAGACATTCCCGTTGACGA 59.754 55.000 4.91 0.00 40.37 4.20
603 652 1.347320 GAGACATTCCCGTTGACGAC 58.653 55.000 4.91 0.00 43.02 4.34
612 661 2.338984 GTTGACGACGAGGTGCCT 59.661 61.111 0.00 0.00 0.00 4.75
613 662 1.582968 GTTGACGACGAGGTGCCTA 59.417 57.895 0.00 0.00 0.00 3.93
614 663 0.731855 GTTGACGACGAGGTGCCTAC 60.732 60.000 0.00 0.00 0.00 3.18
615 664 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
616 665 3.392595 GACGACGAGGTGCCTACGG 62.393 68.421 0.00 1.18 0.00 4.02
617 666 3.437795 CGACGAGGTGCCTACGGT 61.438 66.667 12.22 3.01 0.00 4.83
618 667 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
619 668 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
620 669 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
621 670 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
622 671 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
623 672 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
624 673 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
625 674 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
626 675 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
627 676 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
628 677 1.200716 TGCCTACGGTGACTTCGTAAG 59.799 52.381 0.00 0.00 41.62 2.34
629 678 1.200948 GCCTACGGTGACTTCGTAAGT 59.799 52.381 0.00 0.71 46.38 2.24
630 679 2.352127 GCCTACGGTGACTTCGTAAGTT 60.352 50.000 0.00 0.00 43.03 2.66
631 680 3.858503 GCCTACGGTGACTTCGTAAGTTT 60.859 47.826 0.00 0.00 43.03 2.66
632 681 3.916776 CCTACGGTGACTTCGTAAGTTTC 59.083 47.826 0.00 0.61 43.03 2.78
633 682 3.441496 ACGGTGACTTCGTAAGTTTCA 57.559 42.857 2.51 0.00 43.03 2.69
634 683 3.784338 ACGGTGACTTCGTAAGTTTCAA 58.216 40.909 2.51 0.00 43.03 2.69
635 684 3.800506 ACGGTGACTTCGTAAGTTTCAAG 59.199 43.478 2.51 0.00 43.03 3.02
636 685 4.046462 CGGTGACTTCGTAAGTTTCAAGA 58.954 43.478 2.51 0.00 43.03 3.02
637 686 4.684703 CGGTGACTTCGTAAGTTTCAAGAT 59.315 41.667 2.51 0.00 43.03 2.40
638 687 5.388475 CGGTGACTTCGTAAGTTTCAAGATG 60.388 44.000 2.51 0.00 43.03 2.90
639 688 5.694910 GGTGACTTCGTAAGTTTCAAGATGA 59.305 40.000 2.51 0.00 43.03 2.92
640 689 6.369065 GGTGACTTCGTAAGTTTCAAGATGAT 59.631 38.462 2.51 0.00 43.03 2.45
641 690 7.095187 GGTGACTTCGTAAGTTTCAAGATGATT 60.095 37.037 2.51 0.00 43.03 2.57
642 691 8.283291 GTGACTTCGTAAGTTTCAAGATGATTT 58.717 33.333 2.51 0.00 43.03 2.17
643 692 8.282592 TGACTTCGTAAGTTTCAAGATGATTTG 58.717 33.333 2.51 0.00 43.03 2.32
644 693 8.154649 ACTTCGTAAGTTTCAAGATGATTTGT 57.845 30.769 0.00 0.00 39.04 2.83
645 694 8.283291 ACTTCGTAAGTTTCAAGATGATTTGTC 58.717 33.333 0.00 0.00 39.04 3.18
646 695 6.817396 TCGTAAGTTTCAAGATGATTTGTCG 58.183 36.000 0.00 0.00 39.48 4.35
647 696 6.015504 CGTAAGTTTCAAGATGATTTGTCGG 58.984 40.000 0.00 0.00 0.00 4.79
648 697 4.425577 AGTTTCAAGATGATTTGTCGGC 57.574 40.909 0.00 0.00 0.00 5.54
649 698 4.074970 AGTTTCAAGATGATTTGTCGGCT 58.925 39.130 0.00 0.00 0.00 5.52
650 699 4.154918 AGTTTCAAGATGATTTGTCGGCTC 59.845 41.667 0.00 0.00 0.00 4.70
651 700 3.333029 TCAAGATGATTTGTCGGCTCA 57.667 42.857 0.00 0.00 0.00 4.26
652 701 3.264947 TCAAGATGATTTGTCGGCTCAG 58.735 45.455 0.00 0.00 0.00 3.35
653 702 3.005554 CAAGATGATTTGTCGGCTCAGT 58.994 45.455 0.00 0.00 0.00 3.41
654 703 2.898705 AGATGATTTGTCGGCTCAGTC 58.101 47.619 0.00 0.00 0.00 3.51
655 704 2.499289 AGATGATTTGTCGGCTCAGTCT 59.501 45.455 0.00 0.00 0.00 3.24
656 705 2.839486 TGATTTGTCGGCTCAGTCTT 57.161 45.000 0.00 0.00 0.00 3.01
657 706 3.126001 TGATTTGTCGGCTCAGTCTTT 57.874 42.857 0.00 0.00 0.00 2.52
658 707 3.067106 TGATTTGTCGGCTCAGTCTTTC 58.933 45.455 0.00 0.00 0.00 2.62
659 708 1.497991 TTTGTCGGCTCAGTCTTTCG 58.502 50.000 0.00 0.00 0.00 3.46
660 709 0.319555 TTGTCGGCTCAGTCTTTCGG 60.320 55.000 0.00 0.00 0.00 4.30
661 710 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
662 711 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
663 712 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
664 713 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
665 714 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
666 715 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
667 716 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
668 717 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
669 718 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
670 719 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
671 720 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
672 721 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
673 722 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
674 723 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
675 724 0.325296 TTCGGAGGTGCTCATAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
676 725 0.554305 TCGGAGGTGCTCATAGGGTA 59.446 55.000 0.00 0.00 31.08 3.69
677 726 0.962489 CGGAGGTGCTCATAGGGTAG 59.038 60.000 0.00 0.00 31.08 3.18
678 727 1.343069 GGAGGTGCTCATAGGGTAGG 58.657 60.000 0.00 0.00 31.08 3.18
679 728 1.343069 GAGGTGCTCATAGGGTAGGG 58.657 60.000 0.00 0.00 0.00 3.53
680 729 0.642710 AGGTGCTCATAGGGTAGGGT 59.357 55.000 0.00 0.00 0.00 4.34
681 730 1.864251 AGGTGCTCATAGGGTAGGGTA 59.136 52.381 0.00 0.00 0.00 3.69
682 731 2.455163 AGGTGCTCATAGGGTAGGGTAT 59.545 50.000 0.00 0.00 0.00 2.73
683 732 2.567615 GGTGCTCATAGGGTAGGGTATG 59.432 54.545 0.00 0.00 0.00 2.39
684 733 2.028020 GTGCTCATAGGGTAGGGTATGC 60.028 54.545 0.00 0.00 0.00 3.14
685 734 1.204941 GCTCATAGGGTAGGGTATGCG 59.795 57.143 0.00 0.00 0.00 4.73
686 735 2.526432 CTCATAGGGTAGGGTATGCGT 58.474 52.381 0.00 0.00 0.00 5.24
687 736 2.231478 CTCATAGGGTAGGGTATGCGTG 59.769 54.545 0.00 0.00 0.00 5.34
688 737 1.968493 CATAGGGTAGGGTATGCGTGT 59.032 52.381 0.00 0.00 0.00 4.49
689 738 1.405872 TAGGGTAGGGTATGCGTGTG 58.594 55.000 0.00 0.00 0.00 3.82
690 739 0.616679 AGGGTAGGGTATGCGTGTGT 60.617 55.000 0.00 0.00 0.00 3.72
691 740 0.461339 GGGTAGGGTATGCGTGTGTG 60.461 60.000 0.00 0.00 0.00 3.82
692 741 1.087771 GGTAGGGTATGCGTGTGTGC 61.088 60.000 0.00 0.00 0.00 4.57
693 742 1.153726 TAGGGTATGCGTGTGTGCG 60.154 57.895 0.00 0.00 37.81 5.34
694 743 1.879737 TAGGGTATGCGTGTGTGCGT 61.880 55.000 0.00 0.00 37.81 5.24
695 744 2.322081 GGGTATGCGTGTGTGCGTT 61.322 57.895 0.00 0.00 37.81 4.84
696 745 1.572447 GGTATGCGTGTGTGCGTTT 59.428 52.632 0.00 0.00 37.81 3.60
697 746 0.791422 GGTATGCGTGTGTGCGTTTA 59.209 50.000 0.00 0.00 37.81 2.01
698 747 1.395608 GGTATGCGTGTGTGCGTTTAT 59.604 47.619 0.00 0.00 37.81 1.40
699 748 2.604011 GGTATGCGTGTGTGCGTTTATA 59.396 45.455 0.00 0.00 37.81 0.98
700 749 3.302221 GGTATGCGTGTGTGCGTTTATAG 60.302 47.826 0.00 0.00 37.81 1.31
701 750 1.072391 TGCGTGTGTGCGTTTATAGG 58.928 50.000 0.00 0.00 37.81 2.57
702 751 1.336980 TGCGTGTGTGCGTTTATAGGA 60.337 47.619 0.00 0.00 37.81 2.94
703 752 1.727880 GCGTGTGTGCGTTTATAGGAA 59.272 47.619 0.00 0.00 0.00 3.36
704 753 2.350498 GCGTGTGTGCGTTTATAGGAAT 59.650 45.455 0.00 0.00 0.00 3.01
705 754 3.784199 GCGTGTGTGCGTTTATAGGAATG 60.784 47.826 0.00 0.00 0.00 2.67
706 755 3.615056 CGTGTGTGCGTTTATAGGAATGA 59.385 43.478 0.00 0.00 0.00 2.57
707 756 4.259810 CGTGTGTGCGTTTATAGGAATGAG 60.260 45.833 0.00 0.00 0.00 2.90
708 757 4.630069 GTGTGTGCGTTTATAGGAATGAGT 59.370 41.667 0.00 0.00 0.00 3.41
709 758 5.808540 GTGTGTGCGTTTATAGGAATGAGTA 59.191 40.000 0.00 0.00 0.00 2.59
710 759 6.479001 GTGTGTGCGTTTATAGGAATGAGTAT 59.521 38.462 0.00 0.00 0.00 2.12
711 760 7.650504 GTGTGTGCGTTTATAGGAATGAGTATA 59.349 37.037 0.00 0.00 0.00 1.47
712 761 8.364894 TGTGTGCGTTTATAGGAATGAGTATAT 58.635 33.333 0.00 0.00 0.00 0.86
713 762 8.648097 GTGTGCGTTTATAGGAATGAGTATATG 58.352 37.037 0.00 0.00 0.00 1.78
714 763 7.330946 TGTGCGTTTATAGGAATGAGTATATGC 59.669 37.037 0.00 0.00 0.00 3.14
715 764 6.530181 TGCGTTTATAGGAATGAGTATATGCG 59.470 38.462 0.00 0.00 0.00 4.73
716 765 6.508088 GCGTTTATAGGAATGAGTATATGCGC 60.508 42.308 0.00 0.00 32.64 6.09
717 766 6.530181 CGTTTATAGGAATGAGTATATGCGCA 59.470 38.462 14.96 14.96 0.00 6.09
718 767 7.222805 CGTTTATAGGAATGAGTATATGCGCAT 59.777 37.037 28.23 28.23 0.00 4.73
719 768 8.331022 GTTTATAGGAATGAGTATATGCGCATG 58.669 37.037 32.48 0.00 0.00 4.06
720 769 4.277515 AGGAATGAGTATATGCGCATGT 57.722 40.909 32.48 27.83 0.00 3.21
721 770 5.405935 AGGAATGAGTATATGCGCATGTA 57.594 39.130 32.48 26.67 0.00 2.29
722 771 5.982356 AGGAATGAGTATATGCGCATGTAT 58.018 37.500 32.48 20.83 0.00 2.29
723 772 7.112452 AGGAATGAGTATATGCGCATGTATA 57.888 36.000 32.48 19.75 0.00 1.47
724 773 7.730084 AGGAATGAGTATATGCGCATGTATAT 58.270 34.615 32.48 21.14 37.23 0.86
725 774 7.654923 AGGAATGAGTATATGCGCATGTATATG 59.345 37.037 32.48 0.00 34.71 1.78
726 775 7.653311 GGAATGAGTATATGCGCATGTATATGA 59.347 37.037 32.48 16.69 34.71 2.15
727 776 8.947055 AATGAGTATATGCGCATGTATATGAA 57.053 30.769 32.48 10.59 34.71 2.57
728 777 7.755582 TGAGTATATGCGCATGTATATGAAC 57.244 36.000 32.48 18.66 34.71 3.18
729 778 6.472163 TGAGTATATGCGCATGTATATGAACG 59.528 38.462 32.48 0.00 34.71 3.95
730 779 2.880822 ATGCGCATGTATATGAACGC 57.119 45.000 24.69 14.47 42.40 4.84
731 780 1.864565 TGCGCATGTATATGAACGCT 58.135 45.000 19.42 0.00 42.48 5.07
732 781 2.209273 TGCGCATGTATATGAACGCTT 58.791 42.857 19.42 0.00 42.48 4.68
733 782 2.032979 TGCGCATGTATATGAACGCTTG 60.033 45.455 19.42 0.00 42.48 4.01
734 783 2.563976 CGCATGTATATGAACGCTTGC 58.436 47.619 3.28 0.00 36.36 4.01
735 784 2.563976 GCATGTATATGAACGCTTGCG 58.436 47.619 13.70 13.70 36.36 4.85
736 785 2.032894 GCATGTATATGAACGCTTGCGT 60.033 45.455 15.19 15.19 36.36 5.24
737 786 3.787826 CATGTATATGAACGCTTGCGTC 58.212 45.455 20.87 14.17 36.36 5.19
738 787 3.159353 TGTATATGAACGCTTGCGTCT 57.841 42.857 20.87 11.16 0.00 4.18
739 788 2.857748 TGTATATGAACGCTTGCGTCTG 59.142 45.455 20.87 0.00 0.00 3.51
740 789 2.010145 ATATGAACGCTTGCGTCTGT 57.990 45.000 20.87 11.69 0.00 3.41
741 790 2.640346 TATGAACGCTTGCGTCTGTA 57.360 45.000 20.87 10.79 0.00 2.74
742 791 1.068474 ATGAACGCTTGCGTCTGTAC 58.932 50.000 20.87 10.59 0.00 2.90
743 792 0.942410 TGAACGCTTGCGTCTGTACC 60.942 55.000 20.87 7.23 0.00 3.34
744 793 1.941476 GAACGCTTGCGTCTGTACCG 61.941 60.000 20.87 0.00 0.00 4.02
745 794 2.430244 CGCTTGCGTCTGTACCGT 60.430 61.111 6.86 0.00 0.00 4.83
746 795 2.716828 CGCTTGCGTCTGTACCGTG 61.717 63.158 6.86 0.00 0.00 4.94
747 796 1.663702 GCTTGCGTCTGTACCGTGT 60.664 57.895 0.00 0.00 0.00 4.49
748 797 1.219522 GCTTGCGTCTGTACCGTGTT 61.220 55.000 0.00 0.00 0.00 3.32
749 798 1.931709 GCTTGCGTCTGTACCGTGTTA 60.932 52.381 0.00 0.00 0.00 2.41
750 799 2.396601 CTTGCGTCTGTACCGTGTTAA 58.603 47.619 0.00 0.00 0.00 2.01
751 800 2.505628 TGCGTCTGTACCGTGTTAAA 57.494 45.000 0.00 0.00 0.00 1.52
752 801 2.819115 TGCGTCTGTACCGTGTTAAAA 58.181 42.857 0.00 0.00 0.00 1.52
753 802 3.193263 TGCGTCTGTACCGTGTTAAAAA 58.807 40.909 0.00 0.00 0.00 1.94
754 803 3.808726 TGCGTCTGTACCGTGTTAAAAAT 59.191 39.130 0.00 0.00 0.00 1.82
755 804 4.987285 TGCGTCTGTACCGTGTTAAAAATA 59.013 37.500 0.00 0.00 0.00 1.40
756 805 5.464722 TGCGTCTGTACCGTGTTAAAAATAA 59.535 36.000 0.00 0.00 0.00 1.40
757 806 6.018425 TGCGTCTGTACCGTGTTAAAAATAAA 60.018 34.615 0.00 0.00 0.00 1.40
758 807 6.850317 GCGTCTGTACCGTGTTAAAAATAAAA 59.150 34.615 0.00 0.00 0.00 1.52
759 808 7.375544 GCGTCTGTACCGTGTTAAAAATAAAAA 59.624 33.333 0.00 0.00 0.00 1.94
817 866 0.958382 AGAAGTGCGGCGCCAAATTA 60.958 50.000 30.82 6.28 0.00 1.40
876 934 6.885922 ACGATTTTTGCTAGGTAGTTAGGAT 58.114 36.000 0.00 0.00 0.00 3.24
879 937 8.336080 CGATTTTTGCTAGGTAGTTAGGATTTC 58.664 37.037 0.00 0.00 0.00 2.17
884 942 8.788325 TTGCTAGGTAGTTAGGATTTCTTTTC 57.212 34.615 0.00 0.00 0.00 2.29
1059 1117 1.598856 CCCTCCTCCTCCTCCTCCTT 61.599 65.000 0.00 0.00 0.00 3.36
1121 1179 3.720920 CGTTGACGTTGTAGTATGCTTGC 60.721 47.826 0.00 0.00 34.11 4.01
1131 1189 6.426980 TGTAGTATGCTTGCTTCTCATTTG 57.573 37.500 0.00 0.00 0.00 2.32
1264 1324 1.005394 GCAACCTCCCGAGAACGAA 60.005 57.895 0.00 0.00 42.66 3.85
1313 1373 0.974525 ACTACCCCTACGGCACCTTC 60.975 60.000 0.00 0.00 33.26 3.46
1446 1514 0.606130 TGCGTTGATGAGTGCCATGT 60.606 50.000 0.00 0.00 35.17 3.21
1583 1652 3.127533 GGCATGAGCTTCGCCGTT 61.128 61.111 0.00 0.00 41.70 4.44
1613 1682 2.334946 CGTGTACGAGGTCCCGGAA 61.335 63.158 0.73 0.00 43.02 4.30
1616 1685 1.047002 TGTACGAGGTCCCGGAAAAA 58.953 50.000 0.73 0.00 0.00 1.94
1629 1698 1.145803 GGAAAAACTGACGACCCTCG 58.854 55.000 0.00 0.00 46.93 4.63
1759 1828 1.583495 ATCAACTCCAGCGACGTCGA 61.583 55.000 39.74 19.03 43.02 4.20
1899 1976 3.565516 TCTCATCAAGAAAGTGACGACG 58.434 45.455 0.00 0.00 0.00 5.12
2025 2102 1.136984 CTACACCGTCTGCGACTCC 59.863 63.158 7.03 0.00 41.33 3.85
2087 2164 3.189285 GCATAAATTTGCGCAAGACCAT 58.811 40.909 23.68 11.18 43.02 3.55
2136 2213 1.464997 GCCTTCTCCAACATCGTCAAC 59.535 52.381 0.00 0.00 0.00 3.18
2150 2227 4.419921 CAACCCAGCCCCCGGTAC 62.420 72.222 0.00 0.00 0.00 3.34
2497 2619 1.807142 GGCGCATCTTAATCTTAGGCC 59.193 52.381 10.83 0.00 0.00 5.19
2550 2672 4.922206 TCGTAGTTAGGTTGGGAGTTCTA 58.078 43.478 0.00 0.00 0.00 2.10
2558 2680 5.536497 AGGTTGGGAGTTCTATTGGATTT 57.464 39.130 0.00 0.00 0.00 2.17
2568 2690 8.689972 GGAGTTCTATTGGATTTCATGTCATTT 58.310 33.333 0.00 0.00 0.00 2.32
2618 2740 8.086851 TGTCATTACATGAACATATCATTCGG 57.913 34.615 0.00 0.00 46.85 4.30
2627 2749 9.040939 CATGAACATATCATTCGGTACTTGTTA 57.959 33.333 0.00 0.00 46.85 2.41
2648 2770 4.313020 AGTCTTGAATCAAATGAGCCCT 57.687 40.909 0.00 0.00 0.00 5.19
2657 2779 5.957771 ATCAAATGAGCCCTGTAGTTCTA 57.042 39.130 0.00 0.00 0.00 2.10
2669 2791 7.125811 AGCCCTGTAGTTCTATGTTCTGAAATA 59.874 37.037 0.00 0.00 0.00 1.40
2697 2820 5.084519 TGTACCTTTTAGAGAAGAGGCTGA 58.915 41.667 0.00 0.00 40.01 4.26
2716 2839 2.818432 TGACGCCCGGCTTTAAATTAAA 59.182 40.909 8.05 0.00 0.00 1.52
2739 2862 8.449251 AAAAGTTAATTGCACAAAACCATCAT 57.551 26.923 0.00 0.00 0.00 2.45
2747 2870 9.590451 AATTGCACAAAACCATCATATTTAGAG 57.410 29.630 0.00 0.00 0.00 2.43
2751 2874 7.168637 GCACAAAACCATCATATTTAGAGCATG 59.831 37.037 0.00 0.00 0.00 4.06
2814 2938 5.796350 ACATCGCACATTTAGTAAACCTC 57.204 39.130 0.00 0.00 0.00 3.85
2815 2939 4.634443 ACATCGCACATTTAGTAAACCTCC 59.366 41.667 0.00 0.00 0.00 4.30
2856 2980 8.842358 TCAAGAGTGATTTAGGTCGTTTAATT 57.158 30.769 0.00 0.00 0.00 1.40
2882 3007 0.693622 TGACAAGTGGGGCCGAATTA 59.306 50.000 0.00 0.00 0.00 1.40
2885 3010 1.318576 CAAGTGGGGCCGAATTATCC 58.681 55.000 0.00 0.00 0.00 2.59
2954 4048 4.705110 AATAAAAGCAACCAAGCCCTTT 57.295 36.364 0.00 0.00 34.23 3.11
2961 4055 2.044946 CCAAGCCCTTTCCCCTCG 60.045 66.667 0.00 0.00 0.00 4.63
2986 4080 4.309950 GACAGGGTTGACCGGCGT 62.310 66.667 6.01 0.00 46.96 5.68
3223 4318 3.474570 GAGGCGATGGGCAGGAGT 61.475 66.667 3.67 0.00 46.16 3.85
3224 4319 3.011517 AGGCGATGGGCAGGAGTT 61.012 61.111 3.67 0.00 46.16 3.01
3225 4320 2.044946 GGCGATGGGCAGGAGTTT 60.045 61.111 0.00 0.00 46.16 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.762522 ATATGCCAGTGCTCTCCCCG 61.763 60.000 0.00 0.00 38.71 5.73
93 94 1.068055 TCGAGTTAACCCGCACTCTTC 60.068 52.381 4.43 0.00 37.82 2.87
172 174 2.531522 ATTTTGTTGCTCTTGCCCAC 57.468 45.000 0.00 0.00 38.71 4.61
261 263 1.209128 GTTACCGCATCTGTCCATCG 58.791 55.000 0.00 0.00 0.00 3.84
269 271 1.141053 GGAGGGATTGTTACCGCATCT 59.859 52.381 0.00 0.00 0.00 2.90
279 281 2.617215 GGGTGGGGGAGGGATTGT 60.617 66.667 0.00 0.00 0.00 2.71
281 283 4.799041 GGGGGTGGGGGAGGGATT 62.799 72.222 0.00 0.00 0.00 3.01
384 430 7.126398 GCCAAAATATGCTTTCTAGTTCTACG 58.874 38.462 0.00 0.00 0.00 3.51
423 472 6.268566 GCCAAGGAATATGCTTTCTAGTTTG 58.731 40.000 0.00 0.00 0.00 2.93
458 507 3.440173 CAGGTTGGTTCGTTGCTATCAAT 59.560 43.478 0.00 0.00 34.29 2.57
459 508 2.811431 CAGGTTGGTTCGTTGCTATCAA 59.189 45.455 0.00 0.00 0.00 2.57
460 509 2.224426 ACAGGTTGGTTCGTTGCTATCA 60.224 45.455 0.00 0.00 0.00 2.15
464 513 1.101049 CCACAGGTTGGTTCGTTGCT 61.101 55.000 0.00 0.00 41.10 3.91
468 517 2.958578 CCAGCCACAGGTTGGTTCGT 62.959 60.000 10.42 0.00 46.83 3.85
469 518 2.260869 CCAGCCACAGGTTGGTTCG 61.261 63.158 10.42 0.00 46.83 3.95
470 519 3.763671 CCAGCCACAGGTTGGTTC 58.236 61.111 10.42 0.00 46.83 3.62
474 523 0.540365 AACCATCCAGCCACAGGTTG 60.540 55.000 0.00 0.00 40.80 3.77
475 524 1.004745 CTAACCATCCAGCCACAGGTT 59.995 52.381 0.00 0.00 44.23 3.50
476 525 0.620556 CTAACCATCCAGCCACAGGT 59.379 55.000 0.00 0.00 0.00 4.00
477 526 0.911769 TCTAACCATCCAGCCACAGG 59.088 55.000 0.00 0.00 0.00 4.00
478 527 1.134280 CCTCTAACCATCCAGCCACAG 60.134 57.143 0.00 0.00 0.00 3.66
479 528 0.911769 CCTCTAACCATCCAGCCACA 59.088 55.000 0.00 0.00 0.00 4.17
480 529 0.464554 GCCTCTAACCATCCAGCCAC 60.465 60.000 0.00 0.00 0.00 5.01
481 530 0.913934 TGCCTCTAACCATCCAGCCA 60.914 55.000 0.00 0.00 0.00 4.75
482 531 0.475906 ATGCCTCTAACCATCCAGCC 59.524 55.000 0.00 0.00 0.00 4.85
483 532 1.952296 CAATGCCTCTAACCATCCAGC 59.048 52.381 0.00 0.00 0.00 4.85
484 533 2.947652 CACAATGCCTCTAACCATCCAG 59.052 50.000 0.00 0.00 0.00 3.86
485 534 2.357050 CCACAATGCCTCTAACCATCCA 60.357 50.000 0.00 0.00 0.00 3.41
486 535 2.301346 CCACAATGCCTCTAACCATCC 58.699 52.381 0.00 0.00 0.00 3.51
487 536 3.004752 ACCACAATGCCTCTAACCATC 57.995 47.619 0.00 0.00 0.00 3.51
488 537 4.413520 AGATACCACAATGCCTCTAACCAT 59.586 41.667 0.00 0.00 0.00 3.55
489 538 3.780294 AGATACCACAATGCCTCTAACCA 59.220 43.478 0.00 0.00 0.00 3.67
490 539 4.141711 TGAGATACCACAATGCCTCTAACC 60.142 45.833 0.00 0.00 0.00 2.85
491 540 5.023533 TGAGATACCACAATGCCTCTAAC 57.976 43.478 0.00 0.00 0.00 2.34
492 541 4.962362 TCTGAGATACCACAATGCCTCTAA 59.038 41.667 0.00 0.00 0.00 2.10
493 542 4.342378 GTCTGAGATACCACAATGCCTCTA 59.658 45.833 0.00 0.00 0.00 2.43
494 543 3.133721 GTCTGAGATACCACAATGCCTCT 59.866 47.826 0.00 0.00 0.00 3.69
495 544 3.462021 GTCTGAGATACCACAATGCCTC 58.538 50.000 0.00 0.00 0.00 4.70
496 545 2.171448 GGTCTGAGATACCACAATGCCT 59.829 50.000 0.00 0.00 36.96 4.75
497 546 2.092968 TGGTCTGAGATACCACAATGCC 60.093 50.000 0.00 0.00 42.10 4.40
498 547 3.266510 TGGTCTGAGATACCACAATGC 57.733 47.619 0.00 0.00 42.10 3.56
504 553 1.622449 CCCTGGTGGTCTGAGATACCA 60.622 57.143 17.03 17.03 44.75 3.25
505 554 1.123928 CCCTGGTGGTCTGAGATACC 58.876 60.000 10.74 10.74 37.53 2.73
516 565 0.250901 CAGGACTTGAACCCTGGTGG 60.251 60.000 0.00 0.00 44.68 4.61
517 566 3.329300 CAGGACTTGAACCCTGGTG 57.671 57.895 0.00 0.00 44.68 4.17
521 570 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
522 571 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
523 572 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
524 573 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
525 574 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
526 575 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
527 576 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
528 577 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
529 578 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
530 579 1.668419 ATAAATGCGAGCACCAGGAC 58.332 50.000 0.00 0.00 0.00 3.85
531 580 2.418368 AATAAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
532 581 2.423185 TGAAATAAATGCGAGCACCAGG 59.577 45.455 0.00 0.00 0.00 4.45
533 582 3.488047 CCTGAAATAAATGCGAGCACCAG 60.488 47.826 0.00 0.34 0.00 4.00
534 583 2.423185 CCTGAAATAAATGCGAGCACCA 59.577 45.455 0.00 0.00 0.00 4.17
535 584 2.682856 TCCTGAAATAAATGCGAGCACC 59.317 45.455 0.00 0.00 0.00 5.01
536 585 4.558538 ATCCTGAAATAAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
537 586 5.450412 GGAAATCCTGAAATAAATGCGAGCA 60.450 40.000 0.00 0.00 0.00 4.26
538 587 4.978580 GGAAATCCTGAAATAAATGCGAGC 59.021 41.667 0.00 0.00 0.00 5.03
539 588 5.207768 CGGAAATCCTGAAATAAATGCGAG 58.792 41.667 0.00 0.00 0.00 5.03
540 589 4.036262 CCGGAAATCCTGAAATAAATGCGA 59.964 41.667 0.00 0.00 0.00 5.10
541 590 4.290155 CCGGAAATCCTGAAATAAATGCG 58.710 43.478 0.00 0.00 0.00 4.73
542 591 4.051237 GCCGGAAATCCTGAAATAAATGC 58.949 43.478 5.05 0.00 0.00 3.56
543 592 4.036262 TCGCCGGAAATCCTGAAATAAATG 59.964 41.667 5.05 0.00 0.00 2.32
544 593 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
545 594 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
546 595 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
547 596 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
548 597 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
549 598 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
550 599 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
551 600 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
552 601 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
553 602 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
564 613 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
565 614 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
566 615 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
567 616 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
568 617 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
569 618 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
570 619 0.615331 TGTCTCCTCCCACTGAATGC 59.385 55.000 0.00 0.00 0.00 3.56
571 620 3.539604 GAATGTCTCCTCCCACTGAATG 58.460 50.000 0.00 0.00 0.00 2.67
572 621 2.507471 GGAATGTCTCCTCCCACTGAAT 59.493 50.000 0.00 0.00 41.61 2.57
573 622 1.909302 GGAATGTCTCCTCCCACTGAA 59.091 52.381 0.00 0.00 41.61 3.02
574 623 1.573108 GGAATGTCTCCTCCCACTGA 58.427 55.000 0.00 0.00 41.61 3.41
579 628 0.107654 CAACGGGAATGTCTCCTCCC 60.108 60.000 0.00 0.00 46.97 4.30
580 629 0.902531 TCAACGGGAATGTCTCCTCC 59.097 55.000 0.00 0.00 44.68 4.30
581 630 1.736032 CGTCAACGGGAATGTCTCCTC 60.736 57.143 0.00 0.00 44.68 3.71
582 631 0.246635 CGTCAACGGGAATGTCTCCT 59.753 55.000 0.00 0.00 44.68 3.69
583 632 0.245539 TCGTCAACGGGAATGTCTCC 59.754 55.000 2.31 0.00 44.54 3.71
584 633 1.347320 GTCGTCAACGGGAATGTCTC 58.653 55.000 2.31 0.00 40.29 3.36
585 634 3.509388 GTCGTCAACGGGAATGTCT 57.491 52.632 2.31 0.00 40.29 3.41
595 644 0.731855 GTAGGCACCTCGTCGTCAAC 60.732 60.000 0.00 0.00 0.00 3.18
596 645 1.582968 GTAGGCACCTCGTCGTCAA 59.417 57.895 0.00 0.00 0.00 3.18
597 646 2.683859 CGTAGGCACCTCGTCGTCA 61.684 63.158 0.00 0.00 0.00 4.35
598 647 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
599 648 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
611 660 4.539870 TGAAACTTACGAAGTCACCGTAG 58.460 43.478 0.00 0.00 43.93 3.51
612 661 4.566545 TGAAACTTACGAAGTCACCGTA 57.433 40.909 0.00 0.00 43.93 4.02
613 662 3.441496 TGAAACTTACGAAGTCACCGT 57.559 42.857 0.00 0.00 43.93 4.83
614 663 4.046462 TCTTGAAACTTACGAAGTCACCG 58.954 43.478 0.00 0.00 43.93 4.94
615 664 5.694910 TCATCTTGAAACTTACGAAGTCACC 59.305 40.000 0.00 0.00 43.93 4.02
616 665 6.764877 TCATCTTGAAACTTACGAAGTCAC 57.235 37.500 0.00 0.00 43.93 3.67
617 666 7.962964 AATCATCTTGAAACTTACGAAGTCA 57.037 32.000 0.00 0.00 43.93 3.41
618 667 8.283291 ACAAATCATCTTGAAACTTACGAAGTC 58.717 33.333 0.00 0.00 43.93 3.01
620 669 7.475565 CGACAAATCATCTTGAAACTTACGAAG 59.524 37.037 0.00 0.00 0.00 3.79
621 670 7.287950 CGACAAATCATCTTGAAACTTACGAA 58.712 34.615 0.00 0.00 0.00 3.85
622 671 6.128661 CCGACAAATCATCTTGAAACTTACGA 60.129 38.462 0.00 0.00 0.00 3.43
623 672 6.015504 CCGACAAATCATCTTGAAACTTACG 58.984 40.000 0.00 0.00 0.00 3.18
624 673 5.795441 GCCGACAAATCATCTTGAAACTTAC 59.205 40.000 0.00 0.00 0.00 2.34
625 674 5.705441 AGCCGACAAATCATCTTGAAACTTA 59.295 36.000 0.00 0.00 0.00 2.24
626 675 4.520492 AGCCGACAAATCATCTTGAAACTT 59.480 37.500 0.00 0.00 0.00 2.66
627 676 4.074970 AGCCGACAAATCATCTTGAAACT 58.925 39.130 0.00 0.00 0.00 2.66
628 677 4.083324 TGAGCCGACAAATCATCTTGAAAC 60.083 41.667 0.00 0.00 0.00 2.78
629 678 4.071423 TGAGCCGACAAATCATCTTGAAA 58.929 39.130 0.00 0.00 0.00 2.69
630 679 3.673902 TGAGCCGACAAATCATCTTGAA 58.326 40.909 0.00 0.00 0.00 2.69
631 680 3.264947 CTGAGCCGACAAATCATCTTGA 58.735 45.455 0.00 0.00 0.00 3.02
632 681 3.005554 ACTGAGCCGACAAATCATCTTG 58.994 45.455 0.00 0.00 0.00 3.02
633 682 3.055530 AGACTGAGCCGACAAATCATCTT 60.056 43.478 0.00 0.00 0.00 2.40
634 683 2.499289 AGACTGAGCCGACAAATCATCT 59.501 45.455 0.00 0.00 0.00 2.90
635 684 2.898705 AGACTGAGCCGACAAATCATC 58.101 47.619 0.00 0.00 0.00 2.92
636 685 3.340814 AAGACTGAGCCGACAAATCAT 57.659 42.857 0.00 0.00 0.00 2.45
637 686 2.839486 AAGACTGAGCCGACAAATCA 57.161 45.000 0.00 0.00 0.00 2.57
638 687 2.092838 CGAAAGACTGAGCCGACAAATC 59.907 50.000 0.00 0.00 0.00 2.17
639 688 2.069273 CGAAAGACTGAGCCGACAAAT 58.931 47.619 0.00 0.00 0.00 2.32
640 689 1.497991 CGAAAGACTGAGCCGACAAA 58.502 50.000 0.00 0.00 0.00 2.83
641 690 0.319555 CCGAAAGACTGAGCCGACAA 60.320 55.000 0.00 0.00 0.00 3.18
642 691 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
643 692 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
644 693 1.595993 CCTCCGAAAGACTGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
645 694 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
646 695 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
647 696 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
648 697 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
649 698 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
650 699 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
651 700 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
652 701 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
653 702 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
654 703 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
655 704 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
656 705 0.325296 ACCCTATGAGCACCTCCGAA 60.325 55.000 0.00 0.00 0.00 4.30
657 706 0.554305 TACCCTATGAGCACCTCCGA 59.446 55.000 0.00 0.00 0.00 4.55
658 707 0.962489 CTACCCTATGAGCACCTCCG 59.038 60.000 0.00 0.00 0.00 4.63
659 708 1.343069 CCTACCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
660 709 1.343069 CCCTACCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
661 710 0.642710 ACCCTACCCTATGAGCACCT 59.357 55.000 0.00 0.00 0.00 4.00
662 711 2.393630 TACCCTACCCTATGAGCACC 57.606 55.000 0.00 0.00 0.00 5.01
663 712 2.028020 GCATACCCTACCCTATGAGCAC 60.028 54.545 0.00 0.00 0.00 4.40
664 713 2.257207 GCATACCCTACCCTATGAGCA 58.743 52.381 0.00 0.00 0.00 4.26
665 714 1.204941 CGCATACCCTACCCTATGAGC 59.795 57.143 0.00 0.00 0.00 4.26
666 715 2.231478 CACGCATACCCTACCCTATGAG 59.769 54.545 0.00 0.00 0.00 2.90
667 716 2.244695 CACGCATACCCTACCCTATGA 58.755 52.381 0.00 0.00 0.00 2.15
668 717 1.968493 ACACGCATACCCTACCCTATG 59.032 52.381 0.00 0.00 0.00 2.23
669 718 1.968493 CACACGCATACCCTACCCTAT 59.032 52.381 0.00 0.00 0.00 2.57
670 719 1.342275 ACACACGCATACCCTACCCTA 60.342 52.381 0.00 0.00 0.00 3.53
671 720 0.616679 ACACACGCATACCCTACCCT 60.617 55.000 0.00 0.00 0.00 4.34
672 721 0.461339 CACACACGCATACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
673 722 1.087771 GCACACACGCATACCCTACC 61.088 60.000 0.00 0.00 0.00 3.18
674 723 1.418342 CGCACACACGCATACCCTAC 61.418 60.000 0.00 0.00 0.00 3.18
675 724 1.153726 CGCACACACGCATACCCTA 60.154 57.895 0.00 0.00 0.00 3.53
676 725 2.434185 CGCACACACGCATACCCT 60.434 61.111 0.00 0.00 0.00 4.34
677 726 1.847890 AAACGCACACACGCATACCC 61.848 55.000 0.00 0.00 36.19 3.69
678 727 0.791422 TAAACGCACACACGCATACC 59.209 50.000 0.00 0.00 36.19 2.73
679 728 2.798834 ATAAACGCACACACGCATAC 57.201 45.000 0.00 0.00 36.19 2.39
680 729 2.861335 CCTATAAACGCACACACGCATA 59.139 45.455 0.00 0.00 36.19 3.14
681 730 1.663643 CCTATAAACGCACACACGCAT 59.336 47.619 0.00 0.00 36.19 4.73
682 731 1.072391 CCTATAAACGCACACACGCA 58.928 50.000 0.00 0.00 36.19 5.24
683 732 1.352114 TCCTATAAACGCACACACGC 58.648 50.000 0.00 0.00 36.19 5.34
684 733 3.615056 TCATTCCTATAAACGCACACACG 59.385 43.478 0.00 0.00 39.50 4.49
685 734 4.630069 ACTCATTCCTATAAACGCACACAC 59.370 41.667 0.00 0.00 0.00 3.82
686 735 4.827692 ACTCATTCCTATAAACGCACACA 58.172 39.130 0.00 0.00 0.00 3.72
687 736 8.648097 CATATACTCATTCCTATAAACGCACAC 58.352 37.037 0.00 0.00 0.00 3.82
688 737 7.330946 GCATATACTCATTCCTATAAACGCACA 59.669 37.037 0.00 0.00 0.00 4.57
689 738 7.462856 CGCATATACTCATTCCTATAAACGCAC 60.463 40.741 0.00 0.00 0.00 5.34
690 739 6.530181 CGCATATACTCATTCCTATAAACGCA 59.470 38.462 0.00 0.00 0.00 5.24
691 740 6.508088 GCGCATATACTCATTCCTATAAACGC 60.508 42.308 0.30 0.00 31.66 4.84
692 741 6.530181 TGCGCATATACTCATTCCTATAAACG 59.470 38.462 5.66 0.00 0.00 3.60
693 742 7.827819 TGCGCATATACTCATTCCTATAAAC 57.172 36.000 5.66 0.00 0.00 2.01
694 743 8.040727 ACATGCGCATATACTCATTCCTATAAA 58.959 33.333 24.84 0.00 0.00 1.40
695 744 7.555965 ACATGCGCATATACTCATTCCTATAA 58.444 34.615 24.84 0.00 0.00 0.98
696 745 7.112452 ACATGCGCATATACTCATTCCTATA 57.888 36.000 24.84 0.00 0.00 1.31
697 746 5.982356 ACATGCGCATATACTCATTCCTAT 58.018 37.500 24.84 0.00 0.00 2.57
698 747 5.405935 ACATGCGCATATACTCATTCCTA 57.594 39.130 24.84 0.00 0.00 2.94
699 748 4.277515 ACATGCGCATATACTCATTCCT 57.722 40.909 24.84 0.00 0.00 3.36
700 749 7.653311 TCATATACATGCGCATATACTCATTCC 59.347 37.037 24.84 0.00 31.73 3.01
701 750 8.579682 TCATATACATGCGCATATACTCATTC 57.420 34.615 24.84 0.00 31.73 2.67
702 751 8.820933 GTTCATATACATGCGCATATACTCATT 58.179 33.333 24.84 3.00 31.73 2.57
703 752 7.168135 CGTTCATATACATGCGCATATACTCAT 59.832 37.037 24.84 7.95 31.73 2.90
704 753 6.472163 CGTTCATATACATGCGCATATACTCA 59.528 38.462 24.84 5.74 31.73 3.41
705 754 6.560433 GCGTTCATATACATGCGCATATACTC 60.560 42.308 24.84 8.57 40.90 2.59
706 755 5.232202 GCGTTCATATACATGCGCATATACT 59.768 40.000 24.84 10.63 40.90 2.12
707 756 5.232202 AGCGTTCATATACATGCGCATATAC 59.768 40.000 24.84 4.60 42.54 1.47
708 757 5.348164 AGCGTTCATATACATGCGCATATA 58.652 37.500 24.84 18.04 42.54 0.86
709 758 4.183865 AGCGTTCATATACATGCGCATAT 58.816 39.130 24.84 15.96 42.54 1.78
710 759 3.584834 AGCGTTCATATACATGCGCATA 58.415 40.909 24.84 9.30 42.54 3.14
711 760 2.416747 AGCGTTCATATACATGCGCAT 58.583 42.857 19.28 19.28 42.54 4.73
712 761 1.864565 AGCGTTCATATACATGCGCA 58.135 45.000 14.96 14.96 42.54 6.09
713 762 2.563976 CAAGCGTTCATATACATGCGC 58.436 47.619 0.00 0.00 41.28 6.09
714 763 2.563976 GCAAGCGTTCATATACATGCG 58.436 47.619 0.00 0.00 31.73 4.73
715 764 2.563976 CGCAAGCGTTCATATACATGC 58.436 47.619 6.25 0.00 34.35 4.06
728 777 2.430244 ACGGTACAGACGCAAGCG 60.430 61.111 13.50 13.50 46.03 4.68
729 778 1.219522 AACACGGTACAGACGCAAGC 61.220 55.000 0.00 0.00 45.62 4.01
731 780 2.505628 TTAACACGGTACAGACGCAA 57.494 45.000 0.00 0.00 34.00 4.85
732 781 2.505628 TTTAACACGGTACAGACGCA 57.494 45.000 0.00 0.00 34.00 5.24
733 782 3.857923 TTTTTAACACGGTACAGACGC 57.142 42.857 0.00 0.00 34.00 5.19
734 783 8.765044 TTTTTATTTTTAACACGGTACAGACG 57.235 30.769 0.00 0.00 37.36 4.18
762 811 2.659897 CACGAGCCGGCTATCTGC 60.660 66.667 32.97 16.19 41.94 4.26
763 812 2.028190 CCACGAGCCGGCTATCTG 59.972 66.667 32.97 23.19 0.00 2.90
764 813 2.123854 TCCACGAGCCGGCTATCT 60.124 61.111 32.97 12.04 0.00 1.98
765 814 2.027751 GTCCACGAGCCGGCTATC 59.972 66.667 32.97 18.14 0.00 2.08
766 815 3.900892 CGTCCACGAGCCGGCTAT 61.901 66.667 32.97 18.97 43.02 2.97
817 866 2.978010 CTGTTGCTTCCCGCGGTT 60.978 61.111 26.12 0.00 43.27 4.44
876 934 9.614792 GAGGCTACTTATAAGGATGAAAAGAAA 57.385 33.333 16.73 0.00 0.00 2.52
879 937 6.146347 GCGAGGCTACTTATAAGGATGAAAAG 59.854 42.308 16.73 3.48 0.00 2.27
884 942 3.258372 TGGCGAGGCTACTTATAAGGATG 59.742 47.826 16.73 7.23 0.00 3.51
1041 1099 0.105709 GAAGGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1042 1100 0.933700 AGAAGGAGGAGGAGGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
1043 1101 0.930726 GAGAAGGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
1044 1102 0.105709 GGAGAAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1045 1103 0.105709 GGGAGAAGGAGGAGGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
1046 1104 1.595058 GGGGAGAAGGAGGAGGAGGA 61.595 65.000 0.00 0.00 0.00 3.71
1047 1105 1.074850 GGGGAGAAGGAGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
1059 1117 1.299648 CGCACCATTGAAGGGGAGA 59.700 57.895 0.00 0.00 33.13 3.71
1121 1179 2.604914 CGACCACGATCCAAATGAGAAG 59.395 50.000 0.00 0.00 42.66 2.85
1131 1189 0.108329 ACCATCAACGACCACGATCC 60.108 55.000 0.00 0.00 42.66 3.36
1313 1373 1.522668 TGCCACTTCGACTTCCATTG 58.477 50.000 0.00 0.00 0.00 2.82
1446 1514 2.637382 TGATTAGGATTCAGGGCGCATA 59.363 45.455 10.83 0.00 0.00 3.14
1592 1661 4.139234 GGGACCTCGTACACGCCC 62.139 72.222 0.00 0.00 39.60 6.13
1613 1682 1.301479 GGCGAGGGTCGTCAGTTTT 60.301 57.895 0.00 0.00 45.01 2.43
1629 1698 0.598065 AAGTTGTCGATTTGCTGGGC 59.402 50.000 0.00 0.00 0.00 5.36
1759 1828 3.955771 AAATAAACTGACGCACGTTGT 57.044 38.095 0.00 0.00 0.00 3.32
1790 1862 1.336795 ACAGATTGATCGTGTGCGTCA 60.337 47.619 0.00 0.00 39.49 4.35
1899 1976 1.766143 GCACATTCGCCGTGATCTCC 61.766 60.000 0.00 0.00 36.43 3.71
1923 2000 3.630013 ACGCCCAGCTTCTGCAGA 61.630 61.111 13.74 13.74 42.74 4.26
1992 2069 1.079336 GTAGTTGGTCGGCCTGGTC 60.079 63.158 7.97 0.00 35.27 4.02
2058 2135 2.159393 GCGCAAATTTATGCTCAGGTGA 60.159 45.455 0.30 0.00 44.21 4.02
2083 2160 2.035961 CGAGGATATGGACGTTCATGGT 59.964 50.000 19.98 7.91 0.00 3.55
2087 2164 1.679680 GGTCGAGGATATGGACGTTCA 59.320 52.381 0.00 0.00 37.51 3.18
2157 2272 6.865726 GGATGCAGTGATCAGTAATGTACTAG 59.134 42.308 1.86 0.00 37.23 2.57
2167 2289 0.463204 CCGAGGATGCAGTGATCAGT 59.537 55.000 0.00 0.00 0.00 3.41
2196 2318 3.960755 TCAACATCACAGACGGATAGGAT 59.039 43.478 0.00 0.00 0.00 3.24
2197 2319 3.361786 TCAACATCACAGACGGATAGGA 58.638 45.455 0.00 0.00 0.00 2.94
2198 2320 3.801114 TCAACATCACAGACGGATAGG 57.199 47.619 0.00 0.00 0.00 2.57
2234 2356 1.815840 GCCTCGAGCCTTTACCTGC 60.816 63.158 6.99 0.00 34.35 4.85
2339 2461 1.878953 CACACGGTGTAAAGCCTCTT 58.121 50.000 14.30 0.00 0.00 2.85
2497 2619 3.063704 ACACGCCCATGCATGTGG 61.064 61.111 24.58 23.57 43.28 4.17
2570 2692 7.032580 ACATATGAAAATTCATCCGCGAAAAA 58.967 30.769 8.23 0.00 44.17 1.94
2571 2693 6.559810 ACATATGAAAATTCATCCGCGAAAA 58.440 32.000 8.23 0.00 44.17 2.29
2572 2694 6.130298 ACATATGAAAATTCATCCGCGAAA 57.870 33.333 8.23 0.00 44.17 3.46
2573 2695 5.295540 TGACATATGAAAATTCATCCGCGAA 59.704 36.000 8.23 0.00 44.17 4.70
2574 2696 4.813697 TGACATATGAAAATTCATCCGCGA 59.186 37.500 8.23 0.00 44.17 5.87
2575 2697 5.094429 TGACATATGAAAATTCATCCGCG 57.906 39.130 10.38 0.00 44.17 6.46
2576 2698 8.075574 TGTAATGACATATGAAAATTCATCCGC 58.924 33.333 10.38 3.12 44.17 5.54
2627 2749 4.015084 CAGGGCTCATTTGATTCAAGACT 58.985 43.478 0.00 0.00 0.00 3.24
2669 2791 8.773216 AGCCTCTTCTCTAAAAGGTACAATAAT 58.227 33.333 0.00 0.00 0.00 1.28
2676 2798 4.158025 CGTCAGCCTCTTCTCTAAAAGGTA 59.842 45.833 0.00 0.00 0.00 3.08
2679 2801 2.926838 GCGTCAGCCTCTTCTCTAAAAG 59.073 50.000 0.00 0.00 37.42 2.27
2697 2820 3.256383 ACTTTTAATTTAAAGCCGGGCGT 59.744 39.130 14.39 7.70 38.42 5.68
2716 2839 9.723601 AATATGATGGTTTTGTGCAATTAACTT 57.276 25.926 0.00 0.00 0.00 2.66
2786 2910 8.794406 GGTTTACTAAATGTGCGATGTATTTTG 58.206 33.333 0.00 0.00 0.00 2.44
2791 2915 5.813672 GGAGGTTTACTAAATGTGCGATGTA 59.186 40.000 0.00 0.00 0.00 2.29
2815 2939 9.591788 ATCACTCTTGATCAGTGCTTTTTGCAG 62.592 40.741 8.36 0.00 45.31 4.41
2833 2957 9.939802 AGTAATTAAACGACCTAAATCACTCTT 57.060 29.630 0.00 0.00 0.00 2.85
2834 2958 9.939802 AAGTAATTAAACGACCTAAATCACTCT 57.060 29.630 0.00 0.00 0.00 3.24
2856 2980 1.073284 GGCCCCACTTGTCAGAAAGTA 59.927 52.381 0.00 0.00 38.34 2.24
2882 3007 0.976641 TTGTCAAGTCAGCTCCGGAT 59.023 50.000 3.57 0.00 0.00 4.18
2885 3010 1.939934 TGTTTTGTCAAGTCAGCTCCG 59.060 47.619 0.00 0.00 0.00 4.63
3195 4290 1.828660 ATCGCCTCCCTACTCCACG 60.829 63.158 0.00 0.00 0.00 4.94
3223 4318 2.250939 CGCCGCACTTGACTGGAAA 61.251 57.895 0.00 0.00 0.00 3.13
3224 4319 2.664851 CGCCGCACTTGACTGGAA 60.665 61.111 0.00 0.00 0.00 3.53
3225 4320 3.611674 TCGCCGCACTTGACTGGA 61.612 61.111 0.00 0.00 0.00 3.86
3356 4451 0.322456 GTGTGGTCCATAGCTTGCCA 60.322 55.000 0.00 0.00 0.00 4.92
3389 4484 0.680280 AGGCGAGTCAGGTCGTACAT 60.680 55.000 0.00 0.00 42.17 2.29
3390 4485 1.303074 AGGCGAGTCAGGTCGTACA 60.303 57.895 0.00 0.00 42.17 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.