>input_sequence_50399
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-----------------ATGAAGGCTACGGCGTTTCTTCCCGGCGTCTGCGGCCTCGCCCTCCTCCTCCTCCTCCTTCTC
CCCTTCAATGGTGCGTGTGCATTACTAGATTTGGATCGTTGACGTTGTAGTATGCTTGCTTCTCATTTGGATCGTGGTCG
TTGATGGTCC--CATGGATAGCCGCTGGTGTGGAGTCTCGAGGACCTCTGGGCGGCTACCACTGGTACACCATGTTCATG
TTCGGCGATTCGTTCGCGGACACCGGCAACCTCCCGAGAACGAACTGCAGGAGCTCCTTGTCGCGTCAATGGCACTACCC
CTACGGCACCTTCAATGGAAGTCGAAGTGGCAATCCGCTCGGCCGCTTCTCCAATTACTTGGTTCAGCCCGATATCATCG
GTACGTACATA----TAACAGTACCTATAAATTTATTTGCAAATGAACCGTGCGT----TGATGAGTGCCATGTATGCGC
CCTGAATCCTAATCAGCAAACCTTGATC-GTGGTTCTCTGCAGCGAGGATGTTAGGGCGCCTCGTAGGCCCTCCGGCGTA
CAAGCGCATGGTGAAGCACTACTGCGACCCGTCCGGCATGAGCTTCGCCGTTGGCGGCTCGGGCGTGTACGAGGTCCCGG
AAAAACTGACGACCCTCGCCCAGCAAATCGACAACTTCGAGAGGCTGATCAAGGATCGAACCATCTCCAAATGGCACCTC
GCCGACTCCGTGGCGCTCGTCGCCATCTCTGGCAACGACTACTCGCACATCAACTCCAGCGACGTCGACAACGTGCGTCA
GTTTA---TTTTTTTAATGAATGACGCACACGATCAATCTGTCTGGTTCT-----GCAACTTACTAACCACGGTAGCAAC
GAACGTTCTCTCTTCTCTGCTGGCAGATGATCGCTCTCATCAAGAAAGTGACGACGGAGATCACGGCGAATGTGCAGCGT
CTGCAGAAGCTGGGCGTGAAGAAGATCCTGGTGAACCAGCTGCACCCCGTCGGCTGCACGCCGTGGCTGACCAGGCCGAC
CAACTACACCGTCTGCGACTCCCGGGCCAACATGGGCGTGGACCTCCACAACGGTCACCTGAGCATAAATTTGCGCAAGA
CCATGAACGTCCATATCCTCGACCTCGCCACCGCCTTCTCCAACATCGTCAACCCAGCCCCCGGTACGTAC---------
-----------------------------TAC-------TAGTACATTACTGATCACTGCATCCTCGGATGATCACTATC
CTATCCGTCTGTGATGTTGATGTGCGTGCACGAAAGCAGGTAAAGGCTCGAGGCTGGCCAAGAGGTTCGAGCACAAGCTG
ACGCCTTGCTGCGAGAGCTTTGATCCCGAGGGGTACTGCGGGCAGCTGAGTAAGAACTCGAAGAGGCTTTACACCGTGTG
CAAGAACCCCGACCAGTACTTCTACTGGGACAGCGTCCACCCTACGCAGGCCGGCTGGGAGGCCGTTATGAAGCAGCTGC
AAAAGCCTATGCTCAAGTTCCTAACAAAGGAACATTAA------------------------------------------
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-----------
>chr1D_1_TraesCS1D01G143200
GGAGGGGGGCCCGGCGTCGGTGGCTAGGGTTCCCTCTCGGTCGCGCGCGGGGCGACCCGAGAGGGAGAGCGGGGAGAGCA
CTGGCATATCTCCGAAGAGTGCGGGTTAACTCGAGCCAGTGATACTTATTTTAAGACGGAAGGAGTACTTGAGATTAATT
A-TTGCATGTTGTGTGGGCAAGAGCAACAAAATTTGTTAATTTGAACCATCCTCATATTTCTGAAACGACTAATTTTTCT
TCAAATATTTATTTTGTTCTTTCGATGGACAGATGCGGTAACAATCCCTCCCCCACCCCCCTCCCCCCCAA---------
---------------------------A-AAAAAGAGTATGTGACGCTGTTCGGTTATCCAGAAAAAGA-------TGTT
GCTGTTCACCAAAGATTTCATCACGTAGACGTAGAACTAGAAAGC---ATATTTTGGCCAAAAAAAACAAACAAACTAGA
AAGCATATTCCTTGGCGAACTAGAAAATTGATAGCAACGAACCAACCTGTGGCTGGATGGTTAGAGGCATTGTGGTATCT
CAGACCACCAGGGTTCAAGTCCTGGTGCTCGCATTTATTTCAGGATTTCCGGCGATGCGCATTCAGTGGGAGGAGACATT
CCCGTTGACGACGAGGTGCCTACGGTGACTTCGTAAGTTTCAAGATGATTTGTCGGCTCAGTCTTTCGGAGGTGCTCATA
GGGTAGGGTATGCGTGTGTGCGTTTATAGGAATGAGTATATGCGCATGTATATGAACGCTTGCGTCTGTACCGTGTTAAA
AATAAAAAAGGCAGATAGCCGGCTCGTGGACGGACGCAGCAAAGCGAGAAGTGCGGCGCCAAATTAACCGCGGGAAGCAA
CAG---------TGGATCACGCGGGTGTTACGATTTTTGCTAGGTAGTTAGGATTTCTTTTCATCCTTATAAGTAGCCTC
GCCATTTCCCCTCTATAAATGAGCGTGGAGCACGCAACACCCGCGCATCTGGACTCACCTCCTGATCGCGCCGTTCCGCG
CGCGCGCATTCCTCGAGATGAAGGCTACGGCGTTTCTTCCCGGCGTCTGCGGCCTCGCCCTCCTCCTCCTCCTCCTTCTC
CCCTTCAATGGTGCGTGTGCATTACTAGATTTGGATCGTTGACGTTGTAGTATGCTTGCTTCTCATTTGGATCGTGGTCG
TTGATGGTCC--CATGGATAGCCGCTGGTGTGGAGTCTCGAGGACCTCTGGGCGGCTACCACTGGTACACCATGTTCATG
TTCGGCGATTCGTTCGCGGACACCGGCAACCTCCCGAGAACGAACTGCAGGAGCTCCTTGTCGCGTCAATGGCACTACCC
CTACGGCACCTTCAATGGAAGTCGAAGTGGCAATCCGCTCGGCCGCTTCTCCAATTACTTGGTTCAGCCCGATATCATCG
GTACGTACATA----TAACAGTACCTATAAATTTATTTGCAAATGAACCGTGCGT----TGATGAGTGCCATGTATGCGC
CCTGAATCCTAATCAGCAAACCTTGATC-GTGGTTCTCTGCAGCGAGGATGTTAGGGCGCCTCGTAGGCCCTCCGGCGTA
CAAGCGCATGGTGAAGCACTACTGCGACCCGTCCGGCATGAGCTTCGCCGTTGGCGGCTCGGGCGTGTACGAGGTCCCGG
AAAAACTGACGACCCTCGCCCAGCAAATCGACAACTTCGAGAGGCTGATCAAGGATCGAACCATCTCCAAATGGCACCTC
GCCGACTCCGTGGCGCTCGTCGCCATCTCTGGCAACGACTACTCGCACATCAACTCCAGCGACGTCGACAACGTGCGTCA
GTTTA---TTTTTTTAATGAATGACGCACACGATCAATCTGTCTGGTTCT-----GCAACTTACTAACCACGGTAGCAAC
GAACGTTCTCTCTTCTCTGCTGGCAGATGATCGCTCTCATCAAGAAAGTGACGACGGAGATCACGGCGAATGTGCAGCGT
CTGCAGAAGCTGGGCGTGAAGAAGATCCTGGTGAACCAGCTGCACCCCGTCGGCTGCACGCCGTGGCTGACCAGGCCGAC
CAACTACACCGTCTGCGACTCCCGGGCCAACATGGGCGTGGACCTCCACAACGGTCACCTGAGCATAAATTTGCGCAAGA
CCATGAACGTCCATATCCTCGACCTCGCCACCGCCTTCTCCAACATCGTCAACCCAGCCCCCGGTACGTAC---------
-----------------------------TAC-------TAGTACATTACTGATCACTGCATCCTCGGATGATCACTATC
CTATCCGTCTGTGATGTTGATGTGCGTGCACGAAAGCAGGTAAAGGCTCGAGGCTGGCCAAGAGGTTCGAGCACAAGCTG
ACGCCTTGCTGCGAGAGCTTTGATCCCGAGGGGTACTGCGGGCAGCTGAGTAAGAACTCGAAGAGGCTTTACACCGTGTG
CAAGAACCCCGACCAGTACTTCTACTGGGACAGCGTCCACCCTACGCAGGCCGGCTGGGAGGCCGTTATGAAGCAGCTGC
AAAAGCCTATGCTCAAGTTCCTAACAAAGGAACATTAAGGCGCATCTTAATCTTAGGCCCACATGCATGGGCGTGTGTAT
GCACGCATATCGTAGTTAGGTTGGGAGTTCTATTGGATTTCATGTCATTTTTTTTTCGCGGATGAATTTTCATATGTCAT
TACATGAACATATCATTCGGTACTTGTTAGTCTTGAATCAAATGAGCCCTGTAGTTCTATGTTCTGAAATATTATTGTAC
C-TTTTAGAGAAGAGGCTGACGCCCGGCTTTAAATTAAAAGTTAATTGCACAAAACCATCATATTTAGAGCATGGTTTGC
AGAAAACCACGAGGTCGCTATTTTTTTG-CAAAATACATCGCACATTTAGTAAACCTCCTGCAAAAAGCACTGATCAAGA
GTGATTTAGGTCGTTTAATTACTTTCTGACAAGTGGGGCCGAA-TTATCCGGAGCTGACTTGACAAAACATTTACATATA
CAACC---------------------------------------------------------------------------
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--------------TTAGATCTTAAAAATAAAAGCAACCAAGCCCTTTCCCCTCGCCCCACGGACAGGGTTGACCGGCGT
CGCGGTCACGGCCGTCCTCATCCTCTCCGTTCCGTCAGCCGCCGCATCCCGCCTCGTCGGCATCCTGCAACCCCGGCTCG
ACGAGGAGGACCGTGAGGACGTCCGGGTGCCC-GCGCTGTCGTCGTCCGGCGCCCTGACCCTGCCGGCTGTCGGGATGCC
GTGGCGGGGAGCGTGATCCCCGGCAGGGCGGACACGGAGACGAGGAGGACGTGGAGTAGGGAGGCGATGGGCAGGAGTTT
CCAGTCAAGTGCGGCGACCACGAGCAGGTCGGCACACCCGCGACACAGCGCCACGACCTCCTCCTCGGCGTGCCTGCGGC
ACAACGCCTCGGCCTCCTGCTCGGCGCGTCCGTGTCGGGCTTTGAAGCTCTGGCAAGCTATGGACCACACGGGTCGCGCC
CTCATGTACGACCTGACTCGCCTGGGAGCCACACTACTCAGCGACGGCCATGGCATGGGAGCTGTGCCGGGCAGCCGCAG
CGGCCAGGACC
>chr1A_1
GGAGG-GGGCCCAGCAGCGGTGGCTAGGGTTCCCTCTCGGTCGCGCGAGGGGTGACGCGAGAGGGAGAGGGGGGAGAGCA
CTGGTATATCTCCAAAGAGTGCGGGTTAACTCAAGCCAGCGATACTTATTTTAAGACGGAAGGAGTACTTCAGATTAATT
A-TTGCATGTTGTATGGGCAAGAGCAACAAAATTTGTTAATTTGAACCATCCTCATATTGCTGAAACGACTAATTTTTCT
TCAAATATTTATTTTGTTCTTTTGATGGACGAATGCGGTAGCGCG--------------------------TGCATGCAT
TCCAGCACGTGAGGCTGTTGTTCCCCCA-AAAAAGAGTATGTGACGCTGTTCGGTTATCCAGAAAAAGATGGTGGCTGCT
GCTGTTCACCAAAGATC-GATCACGTACAGGTAGAACTAGAAAGTAGTATGTTTCGGCCAAAAAAAACTAG-----TAGA
AAGCATATTCCTTCGCGAACTAGAAAGCAGATCGAT--------------------------------------------
--------------------------------------------------------------------------------
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---------------TAGCCGGCTCGTGGACGGCCGCAGCAAAGCGAGAAGTGCGGCGCCAAATTTACCGCGGGAAGCAA
CAGGGTCTCGGCTGGATCACGCGTGTGTTACGATTTTTGCTAGGTAGTTAGGA-TTATT---ATCCTTATAAGTAGCCTC
GCCATTTCCCCTCTATGAATGAGCGTGGAACACGCAACACCCGGGCATCTGGACTCACCTCCTGATCGCGCCGTTCCGCG
CGCGCGCATTCCTGGAGATGAAGGTCACGGCGTTTCTTCCCGGCGTCTGCGGCCTCGCT------CTCCTCCTCCTCCTC
CCCTTGCATGGTGCGTGTGTATTACTAGATTTGGATTGTTGACGTTGTAGTATGCTTGTTTCTCATTTCGATCGTGGTTG
TTGATGGTCC--CATGGATAGCCGCTGGCGTGGAGTCTCGAGGACCTCTGGGCGGCTACCACTGGTACACCATGTTCATG
TTCGGCGATTCGTTCGCGGACACCGGCAACCTCCCCAGAACGAGCTGCAGGAGCTCCTTGTCGCGTCAATGGCACTACCC
CTACGGCACCTTTAATGGAAGTCGAAGTGGCAACCCGCTCGGCCGCTTCTCCAATTACTTGGTTCAGCCCGATATCATCG
GTACGTACATACTTATAACAGTATCTATAAATTTATTTGAAAATGAACCGTGCGTGCGTTGATGAGTGCCATGCATGCGC
CCTGAATCCTAATCAGCAAACCTTGATC-GTGGTTCTCTGCAGCGAGGATGTTAGGGCGCCTCGTAGGCCCTCCGGCGTA
CAAGCGCATGGTGAAGCACTACTGTGACCCGTCCGGCATGAGCTTCGCCGTCGGCGGCTCAGGCGTGTTCGAGGTCCCGG
AGAACCTGACGACCCTCTCCAAGCAAATCGACAACTTCGAGAGGCTGATCAAGGATCGAACCATCTCCAAATGGCACCTC
GCCGACTCCGTGGCGCTCGTCGCCATCTCCGGCAACGACTACTCGCGCATCAACTCCAGCGACGTCGGCAACGTGCGTCA
GTTTTTCCTTTTCTGGATGAACGACGCACACAGTCAATCTGTCTGGTTCT-----GCAACTTACTAACTACGGTAGGAAC
T----TTTTCTCTTCT---CTGGCAGATGATCGCTCTCATCAGGAAGGTGACGACCGAGATCACGGCGAACGTGCAGCGG
CTGCAGAAGCTCGGGGTGAAGAAGATCCTGGTGAACCAGCTGCACCCCGTCGGCTGCACGCCGTGGCTCACCAGGCCGAC
CAACTACACCGTCTGCGACTCGCGGGCCAACATGGGCGTGGACCTCCACAACGGCCACCTGAGCATAAATTTGCGCAAGT
CCAAGAACGTCCATATCCTCGACCTCGCCACCGCCTTCTCCAACATCGTCAATCCAGCCCCCGGTATGTAC---------
-----------------------------TATGTACCAGTAGTACATTTCTGATCACTGCATCCTCGAATGATCACTGCT
CTATCCGTCTGTGATGTTGATGTGCGTGCACGAAAACAGGTAAAGGCTCGAGGCTGGCCAAGAGGTTCGAGCACAAGCTG
ACGCCGTGCTGCGAGAGCTTTGATCCCGAGGGGTACTGCGGGCAGCTGAGTAAGAACTCGGAGAGGCTTTACACCGTATG
CAAGAACCCCGACCAGTACTTCTACTGGGACAGCGTGCACCCTACGCAGGCCGGCTGGGAGGCCGTCATGAAGCAGCTGC
AAAAGCCTATGCTCAAGTTCCTAACAAAGGAACACTAAGGCGCATCTTAATCTTAGGCACACATGCATGGGCGTGTGTAT
GCACGCATATCGTAGTTAGGTTGGGTGTTCTCTTGGATTCCATGTCATT-------------------------------
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>chr1B_1
GGAAGGGGGCCCGGCGGCGGCGGCTAGGGTTTCCTCTCGGTCGCGCGTGGGGCGACGCGAGAGGGGGAGGG-GGAGAGCA
CTGGTATATCCCCAAAGAGTGCGGGTTAACTCGAGTCAGTGAAGC-----TTAAGATGGAGGAAATACTTGAGATTAATT
TTTTGCATGTTGTTTGGGCAAGAGCAACAAAAATTGTTAATTTGAACCATCCTCGTATTTCTGAAACGACTAATTTTTCT
TCAAATATCTATTTTGTTCTTTTGATGGACGGATGCGGTAGCGCGTGCCTTCGTGTTGTAGTACGTGTGTATGCATGCAT
TCGAGCACGTGACGCTGTTGTTCCCCCGGAAAAAGAGCATGTGACGCTGTTCGGTTATCCAGAAAGAGATGGTGGCTGTT
GCTGTTGACCAAAGATTTGATCACGTAGAGGTAGAACTAGAAAGC---ATATTTCGGCAAAAAATA--AAATAAACTAGA
AAGCATATTCCTTGGCGAACTAGAAAGCAGAT------------------------------------------------
--------------------------------------------------------------------------------
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----------------AGCCGGCCCGTGGACGGCCGCAGCAAAGCGAGAAGTGCGGCGCCAGATTTACCGCGGGAAGCAA
CAGGGTCTCGACTGGATCACGCGGGTGTTACGATTTTTGCTAGGTAGTTAGGA-TTTTTTTAATCCTTACAAGTAGCCTC
GCCATTTCCCCTCTATAAATGAGCGTGGAGCACGCAACACCCGCGCATCTGGACTCACCTCCTGATCGCGCCGTTCCGAG
CGCGCGCATTCCTCGAGATGAAGGCTACGGCGTTTCTTCCCAGCGTCTGCGGCCTCGCT------CTCG---TCCTCCTC
CCCGTCAATGGTGCGTGTGCATTACTAGATTCGGATCGTTGACGATGTAGTATGCTTGTTTCTCGTTTCGATCGTGGTCG
TTGATGGTCTCTCATGCATAGCCGCTGGTGTGGAGTCTCGAGGACCTCTGGGCGGCTACCACTGGTACACCATGTTCATG
TTCGGCGATTCGTTCGCGGACACCGGCAACCTCCCGAGAACGAGCTGCAGGAGCTCCTTGTCGCGTCAATGGCACTATCC
CTACGGCACCTTTAATGGAAGTCGAAGTGGCAATCCGCTCGGCCGCTTCTCCAATTACTTGGTTCAGCCCGATATCATCG
GTACGCACATAACAGTATTT-----TATTAATTTATTTGCAAATGAACCGCGCGT----TGATGCGTGTCATGCATGCGC
CCCGAATCCTAATCAGCAAGCTTGATCGTGTGGTTCTCTGCAGCGAGGATGTTAGGGCGCCTCGTAGGCCCTCCGGCGTA
CAAGCGCATGGTTAAGCACTACTGCGACCCGTCCGGCATGAGCTTCGCCGTCGGCGGCTCAGGCGTGTACGAGGTCCCGG
AGAACCTGACGACCCTCTCGCAGCAAATCGACAACTTCGAGAGGCTAATCAAGGATCGAACCATCTCCAAATGGCACCTC
GCCGACTCCGTGGCGCTCGTCGCCATCTCCGGCAACGACTACTCGCACATCAACTCCAGCGACGTCGGCAACGTGCGTCA
GTTTA---TT-TTTTAATGAACGACGCACACGATCAATCTGTCTGGTTCTGCGCTGCAACTTACTAACCACGGTAGCAAC
GAACGTTCTCTCTTCACTGCTGGCAGATGATCGCTCTCATCAAGAAAGTGACGACCGAGATCACGGCGAATGTGCAGCGG
CTGCAGAAGCTGGGCGTGAAGAAGATCCTGGTGAACCAGCTGCACCCCGTCGGCTGCACGCCGTGGCTCACCAGGCCGAC
CAACTACACCGTCTGCGACTCGCGGGCCAACATGGGCGTGGACCTCCACAACGGCCACCTCAGCATAAATTTGCGCAAGT
CCAAGAACGTCCATATCCTCGACCTCGCCACCGCCTTCTCCAACATCGTCAATCCAGCCCCAGGTATGAACTACTCCCTC
CGTTCCAAAATAGATTGGAACGGAGGAAGTATGTACTAGTAGTACATTTCTGATCACTGCATCCTCAGATGATCACTGCT
CTATCCGTCTGTGATGTTGATGTGCGCGCACGAAAACAGGTAAAGGCTCGAGGCTGGCCAAGAGGTTCGAGCACAAGCTG
ACGCCGTGCTGCGAGAGCTTTGATCCCGAGGGGTACTGCGGGCAGCTGAGTAAGAACTCGGAGAGGCTTTACATCGTGTG
CAAGAACCCTGACCAGTATTTCTACTGGGACAGCGTGCACCCCACGCAGGCCGGCTGGGAGGCCGTTATGAAGCAGCTGC
AAAAGCCTATGCTCAAGTTCCTAACAAAGGAACATTAAGGCGCATCTTAATCTTCGGCACACATGCACGGGCGTATGTAT
GCAAGCATATCGTAGTTAGGTTGGGAGTTCTGTTGGAT------------------------------TTCATATGTCAT
TACATGAACATATCATTCGCTACTTGTTGGTCTTGAATCAAATGAGCCCCGTAGTTCTCTGTTCTGAAATGTTATTGCAC
TTTTTTAGACAAGAGGCTGGCGCCCGACTTTAAATTAA------------------------------------------
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>chr2A_2718
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---------------------------------------AGTTAATTGCACAAAACCACCACATTTAAGACATCATTTAC
AGAAAACTATGAGGTCACTAATTTTTTG-TAAAA-ACATCGCACATTCAGTAAACCTTTTGCAAAAAGCACTAATC--AA
GTTATTTAGGTCGTTTAATCACTTTCTGACAAAGTGGGGCTATTTTGTCGGGAGCTGACTTGGCAAAACATTTACATATG
CACCCA--------------------------------------------------------------------------
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---------------TAGATCTTAAAAATAAAAGCAATCAACCCATTCTCCCTCCCCAAC---ACAGGGTTGAGTGGCGA
TGCGGTCACGGCCGTCCTCATCCTCTCCGCTCCGTCAGCCGCCGCATCCCGCCTCGTCGGCATCCCCCAACCCCGGCTGG
CGCGCTGTCA---TGAGGACGTCTGGGTGCCCGGTGCTGTCGTCGTCCGGCGCCCTGACCCTGCCGGCCGTCGGGATGCC
GTGGCGGGGAGCGTGATCCCTGGCAGGGCAGACACGGAGACGAGGAGGAGGTG---------------------------
----------------ACCGCGAGCATGTTGGTGCATCCGCGGCACGGCGCCACGGCTTCCTCCTCGGCGTGCCCGCGGC
ACAGCGCCTCGGCCTCCTGCTCGGCGCGGCCGTGTCGCGCTTTGAAGCTCCGGCAAGCCATGGACCACACGGGCCGCGCC
CTT--GTACGATCCGACTCGCCTGGGAGCCACACTACTCAGCGACGGCCATGGCATGGGAGCTGCGCCGGGCAGCCGCAG
CGGCGAGGACC
>chr2B_2718
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---------------------------------------AGTTAATTGCACAAAACCACCACATTAAGGACATCGTTTGC
AGAAAACCACGAGGTCACTATTTTTTGCAAAAAA-ACACCGTACGTTCAGTAAACATTTTGCAAAAAGCATCGATC--GA
GTGATTTAAGTCGTTTAATCACTTTCTAACACGTGGGACCGAA-TTGCTACGAGCTGACTTGACAAAACATTTACATATC
TCTCCCTAATAATAAAGCACCGGTCGAGCGTGCCGTCGAGGACGTTGATGACGGCAGCACAGGCGAGGCCTGGGAGGAGA
TCATGGTTGATGCTTTACCGCCTGAAGTTGTTGACCTGGAACAAGAGGGTAAGGTGGATGTGAGAGCGGAAGCGCACGCC
GTGGTGCAGGATGTCGTGGTGTCCGAAGCACCTGAGGTGCCGGAACCAGAGGTGAAGAGCGAGGAGGTGGTGGTCCGGGA
CACAACCAAGGTGCATCCTGCGCATCAACCAGAGACGAAGGCCGATGAGGTGCTGGTCAGGGATACGGACACAGCTGTTG
TGGTGCAGGAACCGGAAGCAAAGGGTGAGGTGTCATGGTCTCGTGAGGCAGCTGGTGCGCAGACTACAGAGGTACATAAC
GTTTCTGCTTGTTTACCATCCATCCCCAACATTTTGAAGTTGTGATGTCTCATTAGGCGGGCTACTTTTGTTGCTGGTGG
TACGGGGGCAGGCAGTGGCGGTGGCTGCTGCTTAGATGTCTTTGCTGGTTCAGAGAGATAGATGGAGGTGAGTTTGTTCT
GTGCTTATTATGATCGTGTTTGATAATGCCTGTTCAATGAGAGTGCCATTCGGTGTATTGTTTGTATGAATTCTGTAAAA
GTTGTGTTACTATGAGTGAACAAAATCTTGTATGCTGCACCTTTGAGTTTGAGATGCAGATTTGTATTCCCCATGAATAA
CTTAACTCTGACATCATTATACTGTTAACACTGCTTTTCTGCCCCTAATAGTCTGGGGCAGTTAATGATGAGGTTCTCTG
TTTAATGAGTTCCCTAAGCAGCAAAAATACCCAGAAGCAGTGAAGCATTACACTGAAGCGCTCAGGAGAAACCTGAAGGA
TCCGAAGTTAATGATGAAGGCAGTTCTATGTTTAATGAATCACTCGAATATGCCCCGTTGCAACGCACGAGCATCTTTAC
TAGTACACCTTTAATTAAATCTTAAAAATAAAAGCAATCGATCCCTTCCCCCTCCCC----------------------C
CGCGGTCACGGCCGTCCTCATCCTCTCCGCTCCGTCAGTCGTCGCAT-CCGCCTCGTCGGCATCCCGCAACCCCGGCTGG
ATGAGGAGAACCGTCAGGGCGTCCGGGTGCCC-GCGCTGTCGTCGTCCGGCGCCCTGACTCTGCCGGCCGTCGGGATGCC
GTGGCGGGGAGCGTGATCCGCGGCAGGGCGGACACGGAGACAAGGAGGAGGTGGAGTAGGGAGGCGATGGGCGGGAGCGA
CCAGTCAAGTGCGGCGACC------------------------------------------------GCGTGCCCGCGGC
ACA-----------------------------------------------------------------------------
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>chr7D_2769
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----------GAGGTCACTAATTTTTTG-AAAAA-ACACTGCACATTTAGTAAACCTTTTGCAAAAAGCATTGACC--GA
GTGATTTAGGTCGTTTAATCACTTTCTGACAAGTGTGGCCGAA-TTGTCGGGAGCTGACTTGACAAAACATTTACATATA
TACCC---------------------------------------------------------------------------
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--------------TTAGATCTTAAAAATAAAAGCAACCAACCCCTTCCCCCTCCCCCCGCGGAGAGGGTTGACCGGCGC
CGCGGTCACGCCCGTCCTCATCCTCTCCGTTCCGTCAGCCGCCGCATCCCGCCTCGTCGGAATCCCGCAACCCCGGCTCG
ACGAGGAGGACCGTGAGGACGTCCGGGTGCCC-GTGCTGTCGTCGTTCGGCGCCCTGACCCTGCCGGCTGTCGGGATGCC
GTGCCGGGGAGCGTGATCCCCGGTAGGGCGGACACAAAGACGAGGAGGAGGTGGAGTAGGGAGGCGATGGGCAGGAGCGA
CCAGTCAAGTGCGGCGACCACGAGCAGGTCGGCGCACCCGAGACACAGTGCCATGGCCTCCTCCTCGGTGTGCCTGCGTC
ACAGCGCCTCGGCCTCCTGCTCAGCGTGTCCGTGTCGGGCTTTGAAGCTCCGACAACCCATGGACGACACGGGTCGCGCC
CTCGGGTACGACCTGAATCGCCTGGGAGCCACACCACTCAGCGACGGCCATGGCATGGGAGCTGTGCCGGGCAGCAACAG
CGTCTAGGACC
>SNPs
----------------S------------------------------S--------S------------S----------
----S--------S------------------------------------------------------------------
-------------S------------------------------------------------------------------
----------------------S-------S---------S-SSSSS-SSS-SSSSSSSSS-S-SSSSSS----------
--------------------------------------------------------------------------------
------------------S----------S------------------------S----------------S--------
--------------------------SSS---S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------------------S-------------------------------S--------------
-----------------------------------------------------S--S----S------------------
--------------------------------------------------------------------------------
----------------------------------------------------------SSSSSSS-----------S---
----------------------------------------------------------S---------S-----------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
------------S-------------------------------------------------------------------
-----------------------S-------------------------------------------------S------
--------------------------------------------------------------------------------
---------------------------------------------------S--------S-------------------
-S--S------------S--------------------------------------------------------------
-----------------------------S-------------------------------------S------------
---------------------S----------------------------------------------------------
-------------------------------------------------------S-----------------------S
--------------------------------------------------------------------S-----------
---------------------S--------------------------------S------------------------S
---S------------------------------------------------S-------------S-------------
-------------------------------S----------------S----------------------------SSS
-----------------------------------S--------------------------------------------
-----S------------------------------------------------------S-------------------
------------------------------------S-------------------------------------------
----------------------------------------------------------S---------------------
-------------------------------S-------S---------SSSSSSSSSSSSSSSSSSS------------
-------------------S--------S--------------------S--------S-----------S------S--
S--------S---------S------S-----------S-------------------S--S------SS---S------
----------------S------------S----S----------------------SS-----------------SS--
-------------------S--------------------------S--S------------------------------
--S-----------------------------------------------------------------------------
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-----------------------------------------S-----S------S----S-------------------S
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
-------------------------------------------------S---------------------------SSS
---------------------------------S---------------------S------------------------
---S----------------------------------------------S-------S---------------------
---SS---------------------------------------------------------------------------
----S------
>forward_672
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------------GAGGTGCCTACGGTGACTTC------------------------------------------------
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>reverse_2289
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------------------------------------------------ACTGATCACTGCATCCTCGG------------
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>forward_718
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----------------------------------------------------------CAGTCTTTCGGAGGTGCTCA--
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>reverse_2356
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCAGGTAAAGGCTCGAGGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_724
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTCGGAGGTGCTCATA
GGGT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_2461
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAGAGGCTTTACACCGTGTG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_740
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGGTAGGGTATGCGTGTGTG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_2801
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CTTTTAGAGAAGAGGCTGACGC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
