Multiple sequence alignment - TraesCS1D01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G142100 chr1D 100.000 4456 0 0 1 4456 196612584 196608129 0.000000e+00 8229.0
1 TraesCS1D01G142100 chr1D 90.909 418 32 5 149 561 29851263 29851679 1.400000e-154 556.0
2 TraesCS1D01G142100 chr1D 85.949 548 46 17 149 668 252136931 252136387 1.400000e-154 556.0
3 TraesCS1D01G142100 chr1D 90.431 418 34 5 149 561 139684041 139683625 3.030000e-151 545.0
4 TraesCS1D01G142100 chr1D 86.792 318 23 7 2329 2646 69689083 69688785 1.990000e-88 337.0
5 TraesCS1D01G142100 chr1D 91.129 248 22 0 4194 4441 483058530 483058777 1.990000e-88 337.0
6 TraesCS1D01G142100 chr1D 87.603 121 6 7 537 656 361031961 361031849 1.010000e-26 132.0
7 TraesCS1D01G142100 chr1D 85.075 134 8 10 537 669 228569923 228569801 4.680000e-25 126.0
8 TraesCS1D01G142100 chr1A 91.155 1515 55 25 658 2104 246693314 246691811 0.000000e+00 1982.0
9 TraesCS1D01G142100 chr1A 97.112 1108 27 1 2130 3237 246691820 246690718 0.000000e+00 1864.0
10 TraesCS1D01G142100 chr1A 95.048 929 41 3 3223 4147 246690702 246689775 0.000000e+00 1456.0
11 TraesCS1D01G142100 chr1A 90.670 418 33 5 149 561 311141233 311140817 6.510000e-153 551.0
12 TraesCS1D01G142100 chr1A 89.701 301 25 5 4146 4441 246689741 246689442 3.250000e-101 379.0
13 TraesCS1D01G142100 chr1A 95.714 70 3 0 22 91 246693398 246693329 3.640000e-21 113.0
14 TraesCS1D01G142100 chr1B 89.082 1438 55 28 735 2104 272881421 272880018 0.000000e+00 1692.0
15 TraesCS1D01G142100 chr1B 93.694 1110 40 13 2130 3233 272880027 272878942 0.000000e+00 1635.0
16 TraesCS1D01G142100 chr1B 94.205 880 30 3 3252 4111 272878866 272877988 0.000000e+00 1323.0
17 TraesCS1D01G142100 chr1B 89.888 89 9 0 22 110 272884449 272884361 1.010000e-21 115.0
18 TraesCS1D01G142100 chr1B 100.000 45 0 0 4103 4147 272877020 272876976 2.860000e-12 84.2
19 TraesCS1D01G142100 chr1B 84.043 94 7 2 672 758 272884332 272884240 2.860000e-12 84.2
20 TraesCS1D01G142100 chr3D 91.388 418 30 5 149 561 563382572 563382988 6.470000e-158 568.0
21 TraesCS1D01G142100 chr3D 91.190 420 29 6 149 561 489332093 489332511 8.370000e-157 564.0
22 TraesCS1D01G142100 chr3D 86.992 123 9 5 537 659 61600737 61600622 1.010000e-26 132.0
23 TraesCS1D01G142100 chr3D 86.179 123 10 5 537 659 10680576 10680461 4.680000e-25 126.0
24 TraesCS1D01G142100 chr3D 78.313 166 34 2 4190 4353 23065812 23065647 6.100000e-19 106.0
25 TraesCS1D01G142100 chr6D 90.995 422 28 7 149 561 151119499 151119919 1.080000e-155 560.0
26 TraesCS1D01G142100 chr5D 90.625 416 33 5 151 561 100288524 100288938 8.430000e-152 547.0
27 TraesCS1D01G142100 chr5D 90.164 244 20 3 4196 4438 363125313 363125073 9.300000e-82 315.0
28 TraesCS1D01G142100 chr5D 100.000 54 0 0 121 174 181209079 181209132 2.840000e-17 100.0
29 TraesCS1D01G142100 chr5D 78.912 147 26 4 4211 4355 363789904 363790047 1.320000e-15 95.3
30 TraesCS1D01G142100 chr5D 82.540 63 8 1 117 179 291901665 291901724 8.000000e-03 52.8
31 TraesCS1D01G142100 chr2D 90.476 420 32 6 149 561 170427500 170427082 8.430000e-152 547.0
32 TraesCS1D01G142100 chr2D 89.381 226 23 1 4216 4441 430015201 430014977 2.620000e-72 283.0
33 TraesCS1D01G142100 chr2D 85.827 127 8 8 537 662 40678715 40678832 4.680000e-25 126.0
34 TraesCS1D01G142100 chr2D 85.827 127 9 7 534 659 621980316 621980434 4.680000e-25 126.0
35 TraesCS1D01G142100 chr3A 88.679 318 28 3 2329 2646 411839275 411838966 9.040000e-102 381.0
36 TraesCS1D01G142100 chr3A 90.179 224 22 0 4218 4441 572961136 572961359 4.360000e-75 292.0
37 TraesCS1D01G142100 chr6B 93.373 166 11 0 4193 4358 705509224 705509389 3.440000e-61 246.0
38 TraesCS1D01G142100 chr2A 90.960 177 6 3 117 289 224837813 224837983 3.470000e-56 230.0
39 TraesCS1D01G142100 chr3B 87.500 120 10 4 537 656 685219172 685219058 2.800000e-27 134.0
40 TraesCS1D01G142100 chr4D 85.385 130 9 8 534 662 399372015 399372135 4.680000e-25 126.0
41 TraesCS1D01G142100 chr4D 83.942 137 15 5 534 670 370689245 370689374 1.680000e-24 124.0
42 TraesCS1D01G142100 chr4D 78.788 165 28 6 4193 4353 509659561 509659400 2.190000e-18 104.0
43 TraesCS1D01G142100 chr7A 79.375 160 33 0 4194 4353 653637857 653637698 3.640000e-21 113.0
44 TraesCS1D01G142100 chr7A 78.750 160 34 0 4194 4353 653653894 653653735 1.690000e-19 108.0
45 TraesCS1D01G142100 chr7D 79.245 159 24 8 4194 4347 537664930 537665084 7.890000e-18 102.0
46 TraesCS1D01G142100 chr6A 93.939 66 3 1 115 179 500091408 500091473 1.020000e-16 99.0
47 TraesCS1D01G142100 chr5B 75.758 165 31 8 4194 4353 12548977 12548817 1.720000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G142100 chr1D 196608129 196612584 4455 True 8229.000000 8229 100.000000 1 4456 1 chr1D.!!$R3 4455
1 TraesCS1D01G142100 chr1D 252136387 252136931 544 True 556.000000 556 85.949000 149 668 1 chr1D.!!$R5 519
2 TraesCS1D01G142100 chr1A 246689442 246693398 3956 True 1158.800000 1982 93.746000 22 4441 5 chr1A.!!$R2 4419
3 TraesCS1D01G142100 chr1B 272876976 272884449 7473 True 822.233333 1692 91.818667 22 4147 6 chr1B.!!$R1 4125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.777446 AACTGGCCACAATGGGTAGT 59.223 50.000 0.00 0.0 38.19 2.73 F
1008 3933 0.748005 CGGCCGGACAGATGGATTTT 60.748 55.000 20.10 0.0 0.00 1.82 F
1947 4923 1.063492 TGAAGGCCATGATTGCATCCT 60.063 47.619 5.01 0.0 31.86 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1274 4212 0.392193 AATTCAGAGCACAGCCCGAG 60.392 55.0 0.0 0.0 0.0 4.63 R
1976 4953 0.400213 GAGGTGGTGGACATGGACAA 59.600 55.0 0.0 0.0 0.0 3.18 R
3622 6698 0.597568 CAATTCCTGGCTTGTTCGCA 59.402 50.0 0.0 0.0 0.0 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.951457 TGCTTCGGTCATATCGTCAA 57.049 45.000 0.00 0.00 0.00 3.18
20 21 2.809446 TGCTTCGGTCATATCGTCAAG 58.191 47.619 0.00 0.00 0.00 3.02
79 80 2.892852 CCACTGCATCTCAAAGGGAAAA 59.107 45.455 0.00 0.00 0.00 2.29
113 114 6.850752 TTTGAAAATCTTCTGGGGTATTCC 57.149 37.500 0.00 0.00 32.33 3.01
114 115 5.796502 TGAAAATCTTCTGGGGTATTCCT 57.203 39.130 0.00 0.00 32.29 3.36
115 116 6.152638 TGAAAATCTTCTGGGGTATTCCTT 57.847 37.500 0.00 0.00 32.29 3.36
116 117 6.561294 TGAAAATCTTCTGGGGTATTCCTTT 58.439 36.000 0.00 0.00 32.29 3.11
117 118 7.016296 TGAAAATCTTCTGGGGTATTCCTTTT 58.984 34.615 0.00 0.00 32.29 2.27
118 119 8.174085 TGAAAATCTTCTGGGGTATTCCTTTTA 58.826 33.333 0.00 0.00 32.29 1.52
119 120 8.966155 AAAATCTTCTGGGGTATTCCTTTTAA 57.034 30.769 0.00 0.00 35.33 1.52
120 121 8.966155 AAATCTTCTGGGGTATTCCTTTTAAA 57.034 30.769 0.00 0.00 35.33 1.52
121 122 7.956328 ATCTTCTGGGGTATTCCTTTTAAAC 57.044 36.000 0.00 0.00 35.33 2.01
122 123 7.098845 TCTTCTGGGGTATTCCTTTTAAACT 57.901 36.000 0.00 0.00 35.33 2.66
123 124 6.946009 TCTTCTGGGGTATTCCTTTTAAACTG 59.054 38.462 0.00 0.00 35.33 3.16
124 125 5.576128 TCTGGGGTATTCCTTTTAAACTGG 58.424 41.667 0.00 0.00 35.33 4.00
125 126 4.090819 TGGGGTATTCCTTTTAAACTGGC 58.909 43.478 0.00 0.00 35.33 4.85
126 127 3.449737 GGGGTATTCCTTTTAAACTGGCC 59.550 47.826 0.00 0.00 35.33 5.36
127 128 4.090819 GGGTATTCCTTTTAAACTGGCCA 58.909 43.478 4.71 4.71 0.00 5.36
128 129 4.081862 GGGTATTCCTTTTAAACTGGCCAC 60.082 45.833 0.00 0.00 0.00 5.01
129 130 4.525100 GGTATTCCTTTTAAACTGGCCACA 59.475 41.667 0.00 0.00 0.00 4.17
130 131 5.011227 GGTATTCCTTTTAAACTGGCCACAA 59.989 40.000 0.00 0.00 0.00 3.33
131 132 5.823861 ATTCCTTTTAAACTGGCCACAAT 57.176 34.783 0.00 0.00 0.00 2.71
132 133 4.599047 TCCTTTTAAACTGGCCACAATG 57.401 40.909 0.00 0.00 0.00 2.82
133 134 3.323403 TCCTTTTAAACTGGCCACAATGG 59.677 43.478 0.00 0.00 41.55 3.16
134 135 3.556843 CCTTTTAAACTGGCCACAATGGG 60.557 47.826 0.00 0.00 38.19 4.00
135 136 2.390225 TTAAACTGGCCACAATGGGT 57.610 45.000 0.00 0.00 38.19 4.51
136 137 3.527507 TTAAACTGGCCACAATGGGTA 57.472 42.857 0.00 0.00 38.19 3.69
137 138 1.923356 AAACTGGCCACAATGGGTAG 58.077 50.000 0.00 0.00 38.19 3.18
138 139 0.777446 AACTGGCCACAATGGGTAGT 59.223 50.000 0.00 0.00 38.19 2.73
139 140 1.663911 ACTGGCCACAATGGGTAGTA 58.336 50.000 0.00 0.00 38.19 1.82
140 141 1.989586 ACTGGCCACAATGGGTAGTAA 59.010 47.619 0.00 0.00 38.19 2.24
141 142 2.290705 ACTGGCCACAATGGGTAGTAAC 60.291 50.000 0.00 0.00 38.19 2.50
142 143 1.705745 TGGCCACAATGGGTAGTAACA 59.294 47.619 0.00 0.00 38.19 2.41
143 144 2.310349 TGGCCACAATGGGTAGTAACAT 59.690 45.455 0.00 0.00 38.19 2.71
144 145 3.523972 TGGCCACAATGGGTAGTAACATA 59.476 43.478 0.00 0.00 38.19 2.29
145 146 4.134563 GGCCACAATGGGTAGTAACATAG 58.865 47.826 0.00 0.00 38.19 2.23
146 147 4.141574 GGCCACAATGGGTAGTAACATAGA 60.142 45.833 0.00 0.00 38.19 1.98
147 148 5.456186 GGCCACAATGGGTAGTAACATAGAT 60.456 44.000 0.00 0.00 38.19 1.98
158 159 9.420551 GGGTAGTAACATAGATTAGTAACATGC 57.579 37.037 0.00 0.00 31.69 4.06
179 180 7.624661 CATGCACATGTTACTAGTCTATGTTG 58.375 38.462 13.72 8.69 34.23 3.33
183 184 7.043325 GCACATGTTACTAGTCTATGTTGCTAC 60.043 40.741 13.72 0.00 30.15 3.58
207 208 7.183460 ACCTCTATAGTGGGGAGTAACATATC 58.817 42.308 21.82 0.00 33.22 1.63
210 211 7.996788 TCTATAGTGGGGAGTAACATATCTGA 58.003 38.462 0.00 0.00 0.00 3.27
237 240 7.466746 ACATGCAACACTTCATTTATTAGGT 57.533 32.000 0.00 0.00 0.00 3.08
259 262 7.349598 AGGTTATAGACTCATTTTGCCTTGAT 58.650 34.615 0.00 0.00 0.00 2.57
298 301 8.210265 ACTCATACTACTAGTAAGACTACCCAC 58.790 40.741 3.76 0.00 33.89 4.61
360 363 9.499479 CTAGATAAAATAGATGATGTGGCAAGT 57.501 33.333 0.00 0.00 0.00 3.16
371 374 8.970020 AGATGATGTGGCAAGTAATAAATGAAA 58.030 29.630 0.00 0.00 0.00 2.69
433 438 9.750125 GTATGAGTAACATCACACATATCAAGA 57.250 33.333 0.00 0.00 40.07 3.02
465 471 7.012327 TGTGTCTATGCCTAATAAATGAAGTGC 59.988 37.037 0.00 0.00 0.00 4.40
467 473 7.442364 TGTCTATGCCTAATAAATGAAGTGCTC 59.558 37.037 0.00 0.00 0.00 4.26
491 497 7.398829 TCCATGTTACCACACATATGTTACTT 58.601 34.615 5.37 0.00 36.72 2.24
501 507 8.208224 CCACACATATGTTACTTCCCACTATAA 58.792 37.037 5.37 0.00 36.72 0.98
562 568 9.650714 ACTAGTATATGTTACTACCCATTGTCA 57.349 33.333 0.00 0.00 0.00 3.58
565 571 9.998106 AGTATATGTTACTACCCATTGTCATTC 57.002 33.333 0.00 0.00 0.00 2.67
566 572 9.772973 GTATATGTTACTACCCATTGTCATTCA 57.227 33.333 0.00 0.00 0.00 2.57
568 574 9.866655 ATATGTTACTACCCATTGTCATTCATT 57.133 29.630 0.00 0.00 0.00 2.57
570 576 8.050778 TGTTACTACCCATTGTCATTCATTTC 57.949 34.615 0.00 0.00 0.00 2.17
571 577 7.888021 TGTTACTACCCATTGTCATTCATTTCT 59.112 33.333 0.00 0.00 0.00 2.52
573 579 7.781324 ACTACCCATTGTCATTCATTTCTTT 57.219 32.000 0.00 0.00 0.00 2.52
656 685 5.128827 TGTTACTCCCATTGTGGATAGTCTC 59.871 44.000 0.00 0.21 40.96 3.36
662 691 4.499865 CCCATTGTGGATAGTCTCAGTACG 60.500 50.000 0.00 0.00 40.96 3.67
668 697 7.725818 TGTGGATAGTCTCAGTACGTTATAG 57.274 40.000 0.00 0.00 0.00 1.31
669 698 7.503549 TGTGGATAGTCTCAGTACGTTATAGA 58.496 38.462 0.00 0.00 0.00 1.98
678 707 9.044150 GTCTCAGTACGTTATAGAGAGTATTGT 57.956 37.037 0.00 0.00 36.15 2.71
692 724 6.440647 AGAGAGTATTGTACTTGGGATTCACA 59.559 38.462 0.00 0.00 39.59 3.58
725 757 3.064324 GGCGGCCATCCCATATGC 61.064 66.667 15.62 0.00 0.00 3.14
747 786 4.327087 GCTGGAACACAAACAAAACTTCAG 59.673 41.667 0.00 0.00 0.00 3.02
751 3632 4.110036 ACACAAACAAAACTTCAGCTCC 57.890 40.909 0.00 0.00 0.00 4.70
876 3791 3.558418 TCTTCTTATTAATTCCCGCGTGC 59.442 43.478 4.92 0.00 0.00 5.34
936 3854 4.162690 CCTTCCTTCCGGCGGAGG 62.163 72.222 29.04 29.04 31.21 4.30
940 3858 4.452733 CCTTCCGGCGGAGGTGTC 62.453 72.222 32.15 0.00 31.21 3.67
941 3859 4.796231 CTTCCGGCGGAGGTGTCG 62.796 72.222 29.30 10.44 31.21 4.35
955 3880 2.835895 GTCGGCTCTCCTCTCCCC 60.836 72.222 0.00 0.00 0.00 4.81
956 3881 3.024356 TCGGCTCTCCTCTCCCCT 61.024 66.667 0.00 0.00 0.00 4.79
957 3882 2.520741 CGGCTCTCCTCTCCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
958 3883 2.123033 GGCTCTCCTCTCCCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
959 3884 2.123033 GCTCTCCTCTCCCCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
960 3885 3.015332 GCTCTCCTCTCCCCTCCCA 62.015 68.421 0.00 0.00 0.00 4.37
961 3886 1.232792 CTCTCCTCTCCCCTCCCAG 59.767 68.421 0.00 0.00 0.00 4.45
1008 3933 0.748005 CGGCCGGACAGATGGATTTT 60.748 55.000 20.10 0.00 0.00 1.82
1079 4004 2.096248 GGTTCGAGACTCAGAGATGGT 58.904 52.381 3.79 0.00 0.00 3.55
1080 4005 2.098443 GGTTCGAGACTCAGAGATGGTC 59.902 54.545 3.79 0.00 0.00 4.02
1249 4183 1.781025 CTTTCTCGCCAACGCCAACA 61.781 55.000 0.00 0.00 39.84 3.33
1300 4238 2.416747 CTGTGCTCTGAATTCGGACAA 58.583 47.619 13.13 1.67 0.00 3.18
1425 4377 6.465035 CCTTATCCCCCTCTCTTACTGAATTG 60.465 46.154 0.00 0.00 0.00 2.32
1441 4393 3.181424 TGAATTGAACCCCAGTCATTCCA 60.181 43.478 0.00 0.00 0.00 3.53
1445 4397 2.290896 TGAACCCCAGTCATTCCATGTC 60.291 50.000 0.00 0.00 0.00 3.06
1810 4786 3.902086 TCGGCGTCACCACAACGA 61.902 61.111 6.85 0.00 42.62 3.85
1819 4795 2.978010 CCACAACGAAGGCGGCTT 60.978 61.111 25.83 25.83 43.17 4.35
1887 4863 8.299570 ACTTCGCTGTCAATCAAGATTAATTTT 58.700 29.630 0.00 0.00 0.00 1.82
1947 4923 1.063492 TGAAGGCCATGATTGCATCCT 60.063 47.619 5.01 0.00 31.86 3.24
1976 4953 3.643237 TGTACTAGCTAGCTCCACCATT 58.357 45.455 23.26 0.00 0.00 3.16
2041 5018 7.502226 TGGGCAATTATAGTGGACTTCTTATTG 59.498 37.037 0.00 0.00 0.00 1.90
2096 5073 5.886474 AGTCAGTAGGAATCATACGAACTCA 59.114 40.000 8.72 0.00 0.00 3.41
2097 5074 5.972382 GTCAGTAGGAATCATACGAACTCAC 59.028 44.000 0.00 0.00 0.00 3.51
2098 5075 5.650703 TCAGTAGGAATCATACGAACTCACA 59.349 40.000 0.00 0.00 0.00 3.58
2099 5076 6.321435 TCAGTAGGAATCATACGAACTCACAT 59.679 38.462 0.00 0.00 0.00 3.21
2100 5077 7.501225 TCAGTAGGAATCATACGAACTCACATA 59.499 37.037 0.00 0.00 0.00 2.29
2101 5078 7.805542 CAGTAGGAATCATACGAACTCACATAG 59.194 40.741 0.00 0.00 0.00 2.23
2102 5079 6.716934 AGGAATCATACGAACTCACATAGT 57.283 37.500 0.00 0.00 41.49 2.12
2280 5263 4.209452 TGACATGAAAACTGCTCGTTTC 57.791 40.909 0.00 3.22 44.77 2.78
2364 5347 5.514914 TGAAAAATGCAACTTCTTTGACGAC 59.485 36.000 0.00 0.00 37.39 4.34
2511 5494 2.437180 CGGCATCTGCAGGCAAGA 60.437 61.111 15.13 0.00 44.36 3.02
2530 5513 7.685532 GCAAGAGCCTAATTTAATTTACAGC 57.314 36.000 0.00 0.00 33.58 4.40
2531 5514 6.414987 GCAAGAGCCTAATTTAATTTACAGCG 59.585 38.462 0.00 0.00 33.58 5.18
2747 5730 4.696877 CAGCAATCATGTCCTTGTTCACTA 59.303 41.667 0.00 0.00 0.00 2.74
3033 6016 6.006449 ACCAGTAAGCATTTCTTCAGACAAT 58.994 36.000 0.00 0.00 36.25 2.71
3085 6068 4.704965 TCTGATCTGATCAAGATGCTTGG 58.295 43.478 19.95 6.61 46.12 3.61
3160 6143 2.863853 CTGCGACATGACGGATGCG 61.864 63.158 18.67 4.58 35.15 4.73
3237 6250 5.241728 AGAAGAAGATGGTAAGCAACAAACC 59.758 40.000 0.00 0.00 0.00 3.27
3250 6320 2.279650 AAACCGACGACCACACCG 60.280 61.111 0.00 0.00 0.00 4.94
3289 6359 1.269257 GCTGGAACCTGAACAAACAGC 60.269 52.381 0.00 0.00 42.27 4.40
3575 6651 0.166814 GCTTGTAGGTTGAAGCTGCG 59.833 55.000 7.22 0.00 41.21 5.18
3608 6684 2.165437 CAGTAGGAAGCACAGGAGAGTC 59.835 54.545 0.00 0.00 0.00 3.36
3622 6698 0.606944 AGAGTCACGCGTCTCCTCTT 60.607 55.000 20.61 8.97 0.00 2.85
3623 6699 0.455295 GAGTCACGCGTCTCCTCTTG 60.455 60.000 9.86 0.00 0.00 3.02
3624 6700 2.089349 GTCACGCGTCTCCTCTTGC 61.089 63.158 9.86 0.00 0.00 4.01
3707 6783 3.167921 TCGGAGAACAACAAAACTCGA 57.832 42.857 0.00 0.00 0.00 4.04
3875 6965 5.934625 TCTTTCTGTTAGAACTCCATTGCTC 59.065 40.000 0.00 0.00 33.26 4.26
3894 6984 3.849911 CTCCTTCGATGTCTACAAGCAA 58.150 45.455 0.00 0.00 0.00 3.91
4049 7140 0.106708 ATACACGGGCCAGCATAGTG 59.893 55.000 4.39 4.76 38.63 2.74
4056 7147 1.531748 GCCAGCATAGTGGGCCTTA 59.468 57.895 4.53 0.00 41.90 2.69
4260 8366 4.292186 ACAATAAAGAGGCAAGAGCTCA 57.708 40.909 17.77 0.00 41.70 4.26
4270 8376 5.047164 AGAGGCAAGAGCTCATCTATACATG 60.047 44.000 17.77 0.00 37.23 3.21
4276 8382 4.045974 AGAGCTCATCTATACATGGGGGTA 59.954 45.833 17.77 0.00 36.10 3.69
4282 8388 4.827036 TCTATACATGGGGGTACTCTGT 57.173 45.455 0.00 0.00 0.00 3.41
4287 8393 1.139058 CATGGGGGTACTCTGTGTAGC 59.861 57.143 9.83 9.83 45.87 3.58
4294 8400 4.730949 GGTACTCTGTGTAGCCATACAA 57.269 45.455 7.62 0.00 43.42 2.41
4297 8403 4.617253 ACTCTGTGTAGCCATACAACAA 57.383 40.909 0.00 0.00 43.42 2.83
4361 8467 4.840271 ACCCTATTTTGTTCCCTACGAAG 58.160 43.478 0.00 0.00 31.78 3.79
4369 8475 2.231478 TGTTCCCTACGAAGCTTCTGAG 59.769 50.000 23.50 18.46 0.00 3.35
4379 8485 5.552178 ACGAAGCTTCTGAGGAATAAACTT 58.448 37.500 23.50 0.00 0.00 2.66
4384 8490 4.833390 CTTCTGAGGAATAAACTTCCGGT 58.167 43.478 0.00 0.00 43.23 5.28
4392 8498 4.097437 GGAATAAACTTCCGGTTTCCCATC 59.903 45.833 0.00 0.00 43.87 3.51
4394 8500 2.899303 AACTTCCGGTTTCCCATCAT 57.101 45.000 0.00 0.00 33.90 2.45
4397 8503 1.134946 CTTCCGGTTTCCCATCATTGC 59.865 52.381 0.00 0.00 0.00 3.56
4400 8506 2.025793 TCCGGTTTCCCATCATTGCTTA 60.026 45.455 0.00 0.00 0.00 3.09
4419 8525 5.819379 TGCTTAGATTTCAGCAACTAGATGG 59.181 40.000 0.00 0.00 43.14 3.51
4433 8539 1.227645 GATGGCCATACGCTGAGCA 60.228 57.895 20.84 0.00 37.74 4.26
4446 8552 1.484038 CTGAGCAAGCTAGGAGAGGT 58.516 55.000 0.00 0.00 37.55 3.85
4447 8553 1.136695 CTGAGCAAGCTAGGAGAGGTG 59.863 57.143 0.00 0.00 35.56 4.00
4448 8554 0.179086 GAGCAAGCTAGGAGAGGTGC 60.179 60.000 0.00 0.00 35.56 5.01
4449 8555 0.617249 AGCAAGCTAGGAGAGGTGCT 60.617 55.000 0.00 0.00 35.56 4.40
4450 8556 0.251634 GCAAGCTAGGAGAGGTGCTT 59.748 55.000 0.00 0.00 45.22 3.91
4452 8558 0.908198 AAGCTAGGAGAGGTGCTTGG 59.092 55.000 0.00 0.00 43.09 3.61
4453 8559 0.041833 AGCTAGGAGAGGTGCTTGGA 59.958 55.000 0.00 0.00 33.53 3.53
4454 8560 0.463620 GCTAGGAGAGGTGCTTGGAG 59.536 60.000 0.00 0.00 0.00 3.86
4455 8561 1.962402 GCTAGGAGAGGTGCTTGGAGA 60.962 57.143 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.165641 ACTTGACGATATGACCGAAGCA 59.834 45.455 0.00 0.00 0.00 3.91
1 2 2.810650 ACTTGACGATATGACCGAAGC 58.189 47.619 0.00 0.00 0.00 3.86
2 3 6.750501 TCTTTTACTTGACGATATGACCGAAG 59.249 38.462 0.00 0.00 0.00 3.79
3 4 6.623486 TCTTTTACTTGACGATATGACCGAA 58.377 36.000 0.00 0.00 0.00 4.30
4 5 6.127814 ACTCTTTTACTTGACGATATGACCGA 60.128 38.462 0.00 0.00 0.00 4.69
5 6 6.034591 ACTCTTTTACTTGACGATATGACCG 58.965 40.000 0.00 0.00 0.00 4.79
6 7 7.544566 TCAACTCTTTTACTTGACGATATGACC 59.455 37.037 0.00 0.00 0.00 4.02
7 8 8.373992 GTCAACTCTTTTACTTGACGATATGAC 58.626 37.037 0.00 0.00 35.73 3.06
8 9 8.085909 TGTCAACTCTTTTACTTGACGATATGA 58.914 33.333 0.00 0.00 44.51 2.15
9 10 8.239681 TGTCAACTCTTTTACTTGACGATATG 57.760 34.615 0.00 0.00 44.51 1.78
10 11 8.873830 CATGTCAACTCTTTTACTTGACGATAT 58.126 33.333 0.00 0.00 44.51 1.63
11 12 7.870954 ACATGTCAACTCTTTTACTTGACGATA 59.129 33.333 0.00 0.00 44.51 2.92
12 13 6.706270 ACATGTCAACTCTTTTACTTGACGAT 59.294 34.615 0.00 0.00 44.51 3.73
13 14 6.019075 CACATGTCAACTCTTTTACTTGACGA 60.019 38.462 0.00 0.00 44.51 4.20
14 15 6.019075 TCACATGTCAACTCTTTTACTTGACG 60.019 38.462 0.00 0.00 44.51 4.35
15 16 7.246674 TCACATGTCAACTCTTTTACTTGAC 57.753 36.000 0.00 3.34 42.73 3.18
16 17 6.017934 GCTCACATGTCAACTCTTTTACTTGA 60.018 38.462 0.00 0.00 0.00 3.02
17 18 6.138761 GCTCACATGTCAACTCTTTTACTTG 58.861 40.000 0.00 0.00 0.00 3.16
18 19 5.050091 CGCTCACATGTCAACTCTTTTACTT 60.050 40.000 0.00 0.00 0.00 2.24
19 20 4.449068 CGCTCACATGTCAACTCTTTTACT 59.551 41.667 0.00 0.00 0.00 2.24
20 21 4.447724 TCGCTCACATGTCAACTCTTTTAC 59.552 41.667 0.00 0.00 0.00 2.01
91 92 6.152638 AGGAATACCCCAGAAGATTTTCAA 57.847 37.500 0.00 0.00 34.66 2.69
92 93 5.796502 AGGAATACCCCAGAAGATTTTCA 57.203 39.130 0.00 0.00 34.66 2.69
94 95 8.966155 TTAAAAGGAATACCCCAGAAGATTTT 57.034 30.769 0.00 0.00 36.73 1.82
104 105 3.449737 GGCCAGTTTAAAAGGAATACCCC 59.550 47.826 11.16 0.01 36.73 4.95
110 111 4.202305 CCATTGTGGCCAGTTTAAAAGGAA 60.202 41.667 5.11 0.00 0.00 3.36
111 112 3.323403 CCATTGTGGCCAGTTTAAAAGGA 59.677 43.478 5.11 0.00 0.00 3.36
112 113 3.556843 CCCATTGTGGCCAGTTTAAAAGG 60.557 47.826 5.11 2.50 35.79 3.11
113 114 3.070878 ACCCATTGTGGCCAGTTTAAAAG 59.929 43.478 5.11 0.00 35.79 2.27
114 115 3.041946 ACCCATTGTGGCCAGTTTAAAA 58.958 40.909 5.11 0.00 35.79 1.52
115 116 2.683768 ACCCATTGTGGCCAGTTTAAA 58.316 42.857 5.11 0.00 35.79 1.52
116 117 2.390225 ACCCATTGTGGCCAGTTTAA 57.610 45.000 5.11 0.00 35.79 1.52
117 118 2.377193 ACTACCCATTGTGGCCAGTTTA 59.623 45.455 5.11 0.00 35.79 2.01
118 119 1.146982 ACTACCCATTGTGGCCAGTTT 59.853 47.619 5.11 0.00 35.79 2.66
119 120 0.777446 ACTACCCATTGTGGCCAGTT 59.223 50.000 5.11 0.00 35.79 3.16
120 121 1.663911 TACTACCCATTGTGGCCAGT 58.336 50.000 5.11 0.91 35.79 4.00
121 122 2.290641 TGTTACTACCCATTGTGGCCAG 60.291 50.000 5.11 0.00 35.79 4.85
122 123 1.705745 TGTTACTACCCATTGTGGCCA 59.294 47.619 0.00 0.00 35.79 5.36
123 124 2.500392 TGTTACTACCCATTGTGGCC 57.500 50.000 0.00 0.00 35.79 5.36
124 125 5.031066 TCTATGTTACTACCCATTGTGGC 57.969 43.478 0.00 0.00 35.79 5.01
125 126 8.429641 ACTAATCTATGTTACTACCCATTGTGG 58.570 37.037 0.00 0.00 37.25 4.17
132 133 9.420551 GCATGTTACTAATCTATGTTACTACCC 57.579 37.037 0.00 0.00 0.00 3.69
133 134 9.976511 TGCATGTTACTAATCTATGTTACTACC 57.023 33.333 0.00 0.00 0.00 3.18
157 158 5.812642 AGCAACATAGACTAGTAACATGTGC 59.187 40.000 14.07 16.51 30.55 4.57
158 159 7.435488 GGTAGCAACATAGACTAGTAACATGTG 59.565 40.741 14.07 10.58 30.55 3.21
160 161 7.717568 AGGTAGCAACATAGACTAGTAACATG 58.282 38.462 0.00 2.36 0.00 3.21
177 178 3.206866 ACTCCCCACTATAGAGGTAGCAA 59.793 47.826 14.29 0.00 31.70 3.91
179 180 3.529216 ACTCCCCACTATAGAGGTAGC 57.471 52.381 14.29 0.00 31.70 3.58
183 184 7.340743 CAGATATGTTACTCCCCACTATAGAGG 59.659 44.444 6.78 8.10 31.70 3.69
207 208 9.577110 AATAAATGAAGTGTTGCATGTTATCAG 57.423 29.630 0.00 0.00 0.00 2.90
237 240 9.851686 ACATATCAAGGCAAAATGAGTCTATAA 57.148 29.630 0.00 0.00 0.00 0.98
249 252 5.981088 AACATCACACATATCAAGGCAAA 57.019 34.783 0.00 0.00 0.00 3.68
298 301 6.379133 TGTTACTACCTATGTTACTCCCACTG 59.621 42.308 0.00 0.00 0.00 3.66
441 446 7.282585 AGCACTTCATTTATTAGGCATAGACA 58.717 34.615 0.00 0.00 0.00 3.41
448 453 5.300286 ACATGGAGCACTTCATTTATTAGGC 59.700 40.000 0.00 0.00 0.00 3.93
449 454 6.949352 ACATGGAGCACTTCATTTATTAGG 57.051 37.500 0.00 0.00 0.00 2.69
528 534 9.852091 GGTAGTAACATATACTAGTAACATGCC 57.148 37.037 20.04 12.32 31.41 4.40
540 546 9.772973 TGAATGACAATGGGTAGTAACATATAC 57.227 33.333 0.00 0.00 0.00 1.47
542 548 9.866655 AATGAATGACAATGGGTAGTAACATAT 57.133 29.630 0.00 0.00 0.00 1.78
561 567 9.925268 GGCAAGCAATAAATAAAGAAATGAATG 57.075 29.630 0.00 0.00 0.00 2.67
562 568 9.669887 TGGCAAGCAATAAATAAAGAAATGAAT 57.330 25.926 0.00 0.00 0.00 2.57
563 569 8.934825 GTGGCAAGCAATAAATAAAGAAATGAA 58.065 29.630 0.00 0.00 0.00 2.57
564 570 8.093307 TGTGGCAAGCAATAAATAAAGAAATGA 58.907 29.630 0.00 0.00 0.00 2.57
565 571 8.254178 TGTGGCAAGCAATAAATAAAGAAATG 57.746 30.769 0.00 0.00 0.00 2.32
566 572 9.101655 GATGTGGCAAGCAATAAATAAAGAAAT 57.898 29.630 0.00 0.00 0.00 2.17
568 574 7.609960 TGATGTGGCAAGCAATAAATAAAGAA 58.390 30.769 0.00 0.00 0.00 2.52
570 576 7.924412 AGATGATGTGGCAAGCAATAAATAAAG 59.076 33.333 0.00 0.00 0.00 1.85
571 577 7.784037 AGATGATGTGGCAAGCAATAAATAAA 58.216 30.769 0.00 0.00 0.00 1.40
573 579 6.964807 AGATGATGTGGCAAGCAATAAATA 57.035 33.333 0.00 0.00 0.00 1.40
628 657 7.867921 ACTATCCACAATGGGAGTAACATAAA 58.132 34.615 0.00 0.00 41.08 1.40
629 658 7.347222 AGACTATCCACAATGGGAGTAACATAA 59.653 37.037 0.00 0.00 41.08 1.90
643 672 7.989170 TCTATAACGTACTGAGACTATCCACAA 59.011 37.037 0.00 0.00 0.00 3.33
645 674 7.871973 TCTCTATAACGTACTGAGACTATCCAC 59.128 40.741 0.00 0.00 0.00 4.02
668 697 6.640518 TGTGAATCCCAAGTACAATACTCTC 58.359 40.000 0.00 0.00 38.26 3.20
669 698 6.620877 TGTGAATCCCAAGTACAATACTCT 57.379 37.500 0.00 0.00 38.26 3.24
678 707 5.449297 TTCCATGATGTGAATCCCAAGTA 57.551 39.130 0.00 0.00 0.00 2.24
692 724 1.683011 CCGCCACCTTCTTTCCATGAT 60.683 52.381 0.00 0.00 0.00 2.45
725 757 4.327087 GCTGAAGTTTTGTTTGTGTTCCAG 59.673 41.667 0.00 0.00 0.00 3.86
936 3854 2.419739 GGGAGAGGAGAGCCGACAC 61.420 68.421 0.00 0.00 39.96 3.67
939 3857 3.024356 AGGGGAGAGGAGAGCCGA 61.024 66.667 0.00 0.00 39.96 5.54
940 3858 2.520741 GAGGGGAGAGGAGAGCCG 60.521 72.222 0.00 0.00 39.96 5.52
941 3859 2.123033 GGAGGGGAGAGGAGAGCC 60.123 72.222 0.00 0.00 0.00 4.70
955 3880 1.199615 GGGTTTCCTCTCTCTGGGAG 58.800 60.000 0.00 0.00 43.12 4.30
956 3881 0.614979 CGGGTTTCCTCTCTCTGGGA 60.615 60.000 0.00 0.00 0.00 4.37
957 3882 1.617947 CCGGGTTTCCTCTCTCTGGG 61.618 65.000 0.00 0.00 0.00 4.45
958 3883 0.614979 TCCGGGTTTCCTCTCTCTGG 60.615 60.000 0.00 0.00 0.00 3.86
959 3884 0.820871 CTCCGGGTTTCCTCTCTCTG 59.179 60.000 0.00 0.00 0.00 3.35
960 3885 0.324830 CCTCCGGGTTTCCTCTCTCT 60.325 60.000 0.00 0.00 0.00 3.10
961 3886 0.324460 TCCTCCGGGTTTCCTCTCTC 60.324 60.000 0.00 0.00 0.00 3.20
1196 4122 1.896220 TGCAGACCTTAGCTTGGTTG 58.104 50.000 11.63 11.93 38.03 3.77
1221 4147 1.604604 TGGCGAGAAAGAAAAGGGTG 58.395 50.000 0.00 0.00 0.00 4.61
1222 4148 1.954382 GTTGGCGAGAAAGAAAAGGGT 59.046 47.619 0.00 0.00 0.00 4.34
1225 4152 1.663161 GGCGTTGGCGAGAAAGAAAAG 60.663 52.381 0.00 0.00 41.24 2.27
1229 4156 1.227704 TTGGCGTTGGCGAGAAAGA 60.228 52.632 0.00 0.00 41.24 2.52
1249 4183 3.876198 GAAATCGCGCGGCATGGT 61.876 61.111 31.69 8.78 0.00 3.55
1274 4212 0.392193 AATTCAGAGCACAGCCCGAG 60.392 55.000 0.00 0.00 0.00 4.63
1300 4238 2.629617 CAGGCCCAAATGTTTCAGAACT 59.370 45.455 0.00 0.00 36.70 3.01
1518 4476 0.839946 ATCGGATTGGAAGGGAGTGG 59.160 55.000 0.00 0.00 0.00 4.00
1810 4786 1.303643 CCTTTCTCCAAGCCGCCTT 60.304 57.895 0.00 0.00 0.00 4.35
1819 4795 1.827792 TCCACTTTCCCCTTTCTCCA 58.172 50.000 0.00 0.00 0.00 3.86
1887 4863 2.734606 CAGTGAAGTGCCGTTAAATCGA 59.265 45.455 0.00 0.00 0.00 3.59
1947 4923 3.821600 GAGCTAGCTAGTACATGGCTACA 59.178 47.826 19.38 0.00 45.19 2.74
1976 4953 0.400213 GAGGTGGTGGACATGGACAA 59.600 55.000 0.00 0.00 0.00 3.18
2069 5046 6.827251 AGTTCGTATGATTCCTACTGACTACA 59.173 38.462 0.00 0.00 0.00 2.74
2070 5047 7.012138 TGAGTTCGTATGATTCCTACTGACTAC 59.988 40.741 0.00 0.00 0.00 2.73
2129 5106 9.409918 AGTAGAATAGCTTCAGTAACTATGTGA 57.590 33.333 0.00 0.00 33.56 3.58
2142 5119 9.534565 TGATACATCACAAAGTAGAATAGCTTC 57.465 33.333 0.00 0.00 0.00 3.86
2226 5203 7.469456 GCCATTAGTACAGTCAAAAGGTGAAAA 60.469 37.037 0.00 0.00 38.23 2.29
2280 5263 1.511850 TCTGTTGCACCTGTTGATCG 58.488 50.000 0.00 0.00 0.00 3.69
2364 5347 3.483574 GGAATGTGAACACGCTTACATCG 60.484 47.826 0.57 0.00 32.97 3.84
2479 5462 2.202919 CCGCATCCATCGCAGTGA 60.203 61.111 0.00 0.00 0.00 3.41
2511 5494 6.998673 AGGATCGCTGTAAATTAAATTAGGCT 59.001 34.615 0.00 0.00 0.00 4.58
2522 5505 4.935808 ACGAAAAGAAGGATCGCTGTAAAT 59.064 37.500 0.00 0.00 40.09 1.40
2523 5506 4.312443 ACGAAAAGAAGGATCGCTGTAAA 58.688 39.130 0.00 0.00 40.09 2.01
2524 5507 3.921677 ACGAAAAGAAGGATCGCTGTAA 58.078 40.909 0.00 0.00 40.09 2.41
2526 5509 2.338500 GACGAAAAGAAGGATCGCTGT 58.662 47.619 0.00 0.00 40.09 4.40
2527 5510 1.321743 CGACGAAAAGAAGGATCGCTG 59.678 52.381 0.00 0.00 40.09 5.18
2528 5511 1.201647 TCGACGAAAAGAAGGATCGCT 59.798 47.619 0.00 0.00 40.09 4.93
2529 5512 1.625616 TCGACGAAAAGAAGGATCGC 58.374 50.000 0.00 0.00 40.09 4.58
2530 5513 3.479866 CGTTTCGACGAAAAGAAGGATCG 60.480 47.826 25.65 17.49 42.05 3.69
2531 5514 3.427863 ACGTTTCGACGAAAAGAAGGATC 59.572 43.478 32.88 15.46 35.31 3.36
2735 5718 2.775384 ACACCCTGTTAGTGAACAAGGA 59.225 45.455 11.50 0.00 46.37 3.36
2747 5730 3.021451 GCTGTAGCAACACCCTGTT 57.979 52.632 0.00 0.00 42.08 3.16
3033 6016 5.039984 CGTCCATTTCATGTGAACAAACAA 58.960 37.500 0.00 0.00 33.13 2.83
3060 6043 3.388350 AGCATCTTGATCAGATCAGAGCA 59.612 43.478 20.89 1.47 40.67 4.26
3062 6045 4.752604 CCAAGCATCTTGATCAGATCAGAG 59.247 45.833 12.97 12.87 40.67 3.35
3085 6068 3.437395 GGAAAACAAACCAACCAACCAAC 59.563 43.478 0.00 0.00 0.00 3.77
3160 6143 1.739562 CTGGTCGAGCTTCTGCCAC 60.740 63.158 16.64 0.00 40.80 5.01
3237 6250 1.008652 TTACACGGTGTGGTCGTCG 60.009 57.895 23.36 0.00 38.94 5.12
3250 6320 2.493278 AGCATTGGCAAGATGGTTACAC 59.507 45.455 5.96 0.00 44.61 2.90
3289 6359 5.466728 TGGAAGAAGAAGAAGAAACACATCG 59.533 40.000 0.00 0.00 0.00 3.84
3518 6594 3.920231 TCATCTTGACCAGATCCTTGG 57.080 47.619 0.00 0.00 40.67 3.61
3520 6596 3.137913 CCCATCATCTTGACCAGATCCTT 59.862 47.826 0.00 0.00 40.67 3.36
3608 6684 3.175240 CGCAAGAGGAGACGCGTG 61.175 66.667 20.70 0.00 42.66 5.34
3622 6698 0.597568 CAATTCCTGGCTTGTTCGCA 59.402 50.000 0.00 0.00 0.00 5.10
3623 6699 0.733909 GCAATTCCTGGCTTGTTCGC 60.734 55.000 9.57 0.00 0.00 4.70
3624 6700 0.883833 AGCAATTCCTGGCTTGTTCG 59.116 50.000 9.57 0.00 36.92 3.95
3875 6965 3.325870 TGTTGCTTGTAGACATCGAAGG 58.674 45.455 0.00 0.00 0.00 3.46
4204 8310 6.428083 TTTGGAATAAAACTCTTTTCCCCC 57.572 37.500 0.00 0.00 37.43 5.40
4242 8348 6.684897 ATAGATGAGCTCTTGCCTCTTTAT 57.315 37.500 16.19 0.00 40.80 1.40
4244 8350 5.365025 TGTATAGATGAGCTCTTGCCTCTTT 59.635 40.000 16.19 7.04 40.80 2.52
4260 8366 5.087323 CACAGAGTACCCCCATGTATAGAT 58.913 45.833 0.00 0.00 0.00 1.98
4270 8376 0.616679 TGGCTACACAGAGTACCCCC 60.617 60.000 0.00 0.00 28.82 5.40
4276 8382 4.617253 TTGTTGTATGGCTACACAGAGT 57.383 40.909 0.00 0.00 37.58 3.24
4282 8388 4.634004 GTGTAGCATTGTTGTATGGCTACA 59.366 41.667 17.78 17.78 39.69 2.74
4287 8393 4.937620 ACTGAGTGTAGCATTGTTGTATGG 59.062 41.667 0.00 0.00 0.00 2.74
4294 8400 3.506455 AGTCGTACTGAGTGTAGCATTGT 59.494 43.478 0.00 0.00 0.00 2.71
4297 8403 6.711194 ACATATAGTCGTACTGAGTGTAGCAT 59.289 38.462 0.00 0.00 28.55 3.79
4324 8430 0.394565 AGGGTAGCAGATCGATTGGC 59.605 55.000 12.71 12.71 0.00 4.52
4361 8467 3.623510 CCGGAAGTTTATTCCTCAGAAGC 59.376 47.826 0.00 0.00 36.45 3.86
4384 8490 6.406177 GCTGAAATCTAAGCAATGATGGGAAA 60.406 38.462 0.00 0.00 39.31 3.13
4397 8503 5.238214 GGCCATCTAGTTGCTGAAATCTAAG 59.762 44.000 0.00 0.00 0.00 2.18
4400 8506 3.054139 TGGCCATCTAGTTGCTGAAATCT 60.054 43.478 0.00 0.00 0.00 2.40
4413 8519 0.318441 GCTCAGCGTATGGCCATCTA 59.682 55.000 24.80 1.74 45.17 1.98
4419 8525 2.711924 GCTTGCTCAGCGTATGGC 59.288 61.111 0.00 0.00 39.29 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.