Multiple sequence alignment - TraesCS1D01G134300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G134300 chr1D 100.000 3467 0 0 1 3467 168797764 168801230 0.000000e+00 6403.0
1 TraesCS1D01G134300 chr1D 83.663 202 23 5 2747 2938 45776326 45776527 7.640000e-42 182.0
2 TraesCS1D01G134300 chr6D 94.434 2048 63 17 1439 3467 934124 932109 0.000000e+00 3103.0
3 TraesCS1D01G134300 chr6D 93.128 1106 51 11 2386 3467 297360947 297362051 0.000000e+00 1598.0
4 TraesCS1D01G134300 chr6D 91.901 284 20 1 1 281 313978278 313977995 9.020000e-106 394.0
5 TraesCS1D01G134300 chr6D 90.657 289 22 3 1 284 339786485 339786773 2.530000e-101 379.0
6 TraesCS1D01G134300 chr6D 89.865 296 23 5 1 290 359699766 359700060 1.170000e-99 374.0
7 TraesCS1D01G134300 chr6D 89.597 298 24 5 1 292 357908247 357908543 4.230000e-99 372.0
8 TraesCS1D01G134300 chr6D 93.069 202 12 2 637 837 164163271 164163071 9.410000e-76 294.0
9 TraesCS1D01G134300 chr3A 94.718 1117 50 7 1249 2361 327916402 327917513 0.000000e+00 1727.0
10 TraesCS1D01G134300 chr3A 94.704 1114 50 8 1252 2361 162275705 162274597 0.000000e+00 1722.0
11 TraesCS1D01G134300 chr3A 94.270 1117 56 7 1249 2361 367859246 367860358 0.000000e+00 1701.0
12 TraesCS1D01G134300 chr3A 93.878 49 3 0 2747 2795 383368018 383367970 1.330000e-09 75.0
13 TraesCS1D01G134300 chr7D 91.531 980 67 9 968 1938 252544402 252545374 0.000000e+00 1336.0
14 TraesCS1D01G134300 chr7D 90.657 289 21 4 1 284 140900298 140900585 2.530000e-101 379.0
15 TraesCS1D01G134300 chr7D 87.815 238 20 6 2506 2735 390020737 390020973 1.590000e-68 270.0
16 TraesCS1D01G134300 chr7A 91.452 971 73 7 968 1933 267570662 267569697 0.000000e+00 1325.0
17 TraesCS1D01G134300 chr7A 89.286 112 11 1 2389 2500 440691305 440691415 4.670000e-29 139.0
18 TraesCS1D01G134300 chr7A 93.878 49 3 0 2747 2795 268621772 268621820 1.330000e-09 75.0
19 TraesCS1D01G134300 chr7B 89.673 978 89 11 968 1938 229825856 229826828 0.000000e+00 1236.0
20 TraesCS1D01G134300 chr7B 84.564 596 59 10 299 889 301887566 301886999 8.400000e-156 560.0
21 TraesCS1D01G134300 chr7B 89.899 297 25 3 1 292 379216560 379216264 9.080000e-101 377.0
22 TraesCS1D01G134300 chr7B 83.665 251 24 6 2506 2751 385063875 385064113 1.620000e-53 220.0
23 TraesCS1D01G134300 chr3B 93.379 438 26 3 403 837 117365517 117365954 0.000000e+00 645.0
24 TraesCS1D01G134300 chr3B 91.463 328 20 5 3146 3467 255022736 255023061 8.830000e-121 444.0
25 TraesCS1D01G134300 chr3B 77.239 681 111 34 2816 3467 72018379 72017714 3.290000e-95 359.0
26 TraesCS1D01G134300 chr3B 79.845 387 60 15 3093 3467 72024226 72023846 2.050000e-67 267.0
27 TraesCS1D01G134300 chr3B 94.382 89 4 1 301 388 117365442 117365530 6.040000e-28 135.0
28 TraesCS1D01G134300 chr3B 89.062 64 4 3 300 362 68221463 68221524 3.710000e-10 76.8
29 TraesCS1D01G134300 chr4B 92.890 436 29 2 403 837 389980246 389980680 1.760000e-177 632.0
30 TraesCS1D01G134300 chr4B 80.214 748 96 24 2744 3467 381864312 381863593 6.640000e-142 514.0
31 TraesCS1D01G134300 chr4B 94.505 91 4 1 299 388 389980169 389980259 4.670000e-29 139.0
32 TraesCS1D01G134300 chr4B 87.097 62 6 2 302 362 6363313 6363253 6.210000e-08 69.4
33 TraesCS1D01G134300 chr4A 79.866 745 98 26 2744 3467 695248439 695247726 6.680000e-137 497.0
34 TraesCS1D01G134300 chr4A 80.973 452 66 14 3025 3467 254275986 254276426 1.190000e-89 340.0
35 TraesCS1D01G134300 chr4A 76.293 232 29 21 302 518 582595935 582595715 2.200000e-17 100.0
36 TraesCS1D01G134300 chr5D 84.424 443 30 15 1961 2370 211563973 211564409 1.940000e-107 399.0
37 TraesCS1D01G134300 chr5D 90.941 287 21 5 1 284 260906904 260906620 7.020000e-102 381.0
38 TraesCS1D01G134300 chr5D 89.865 296 25 3 1 291 427469069 427468774 3.270000e-100 375.0
39 TraesCS1D01G134300 chr5D 79.730 148 20 8 307 451 141675245 141675385 7.920000e-17 99.0
40 TraesCS1D01G134300 chr4D 89.831 295 24 4 1 290 369080027 369080320 1.170000e-99 374.0
41 TraesCS1D01G134300 chr2A 79.913 458 66 19 3025 3467 486441598 486441152 2.600000e-81 313.0
42 TraesCS1D01G134300 chr2A 93.878 49 3 0 2747 2795 560166875 560166923 1.330000e-09 75.0
43 TraesCS1D01G134300 chr2A 89.796 49 5 0 2747 2795 560155626 560155674 2.890000e-06 63.9
44 TraesCS1D01G134300 chr5B 83.976 337 22 9 1961 2273 537833648 537833320 9.410000e-76 294.0
45 TraesCS1D01G134300 chrUn 79.845 387 60 15 3093 3467 369073489 369073869 2.050000e-67 267.0
46 TraesCS1D01G134300 chrUn 100.000 30 0 0 2386 2415 686027 686056 4.830000e-04 56.5
47 TraesCS1D01G134300 chrUn 100.000 30 0 0 2386 2415 415455034 415455005 4.830000e-04 56.5
48 TraesCS1D01G134300 chr2B 92.667 150 9 2 2386 2535 639917838 639917691 7.540000e-52 215.0
49 TraesCS1D01G134300 chr2B 92.000 150 10 2 2386 2535 639880780 639880633 3.510000e-50 209.0
50 TraesCS1D01G134300 chr1A 90.400 125 11 1 1969 2093 115269670 115269547 2.770000e-36 163.0
51 TraesCS1D01G134300 chr5A 88.060 67 7 1 299 365 309381619 309381554 1.030000e-10 78.7
52 TraesCS1D01G134300 chr2D 90.323 62 3 3 302 362 285435130 285435189 1.030000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G134300 chr1D 168797764 168801230 3466 False 6403.0 6403 100.0000 1 3467 1 chr1D.!!$F2 3466
1 TraesCS1D01G134300 chr6D 932109 934124 2015 True 3103.0 3103 94.4340 1439 3467 1 chr6D.!!$R1 2028
2 TraesCS1D01G134300 chr6D 297360947 297362051 1104 False 1598.0 1598 93.1280 2386 3467 1 chr6D.!!$F1 1081
3 TraesCS1D01G134300 chr3A 327916402 327917513 1111 False 1727.0 1727 94.7180 1249 2361 1 chr3A.!!$F1 1112
4 TraesCS1D01G134300 chr3A 162274597 162275705 1108 True 1722.0 1722 94.7040 1252 2361 1 chr3A.!!$R1 1109
5 TraesCS1D01G134300 chr3A 367859246 367860358 1112 False 1701.0 1701 94.2700 1249 2361 1 chr3A.!!$F2 1112
6 TraesCS1D01G134300 chr7D 252544402 252545374 972 False 1336.0 1336 91.5310 968 1938 1 chr7D.!!$F2 970
7 TraesCS1D01G134300 chr7A 267569697 267570662 965 True 1325.0 1325 91.4520 968 1933 1 chr7A.!!$R1 965
8 TraesCS1D01G134300 chr7B 229825856 229826828 972 False 1236.0 1236 89.6730 968 1938 1 chr7B.!!$F1 970
9 TraesCS1D01G134300 chr7B 301886999 301887566 567 True 560.0 560 84.5640 299 889 1 chr7B.!!$R1 590
10 TraesCS1D01G134300 chr3B 117365442 117365954 512 False 390.0 645 93.8805 301 837 2 chr3B.!!$F3 536
11 TraesCS1D01G134300 chr3B 72017714 72018379 665 True 359.0 359 77.2390 2816 3467 1 chr3B.!!$R1 651
12 TraesCS1D01G134300 chr4B 381863593 381864312 719 True 514.0 514 80.2140 2744 3467 1 chr4B.!!$R2 723
13 TraesCS1D01G134300 chr4B 389980169 389980680 511 False 385.5 632 93.6975 299 837 2 chr4B.!!$F1 538
14 TraesCS1D01G134300 chr4A 695247726 695248439 713 True 497.0 497 79.8660 2744 3467 1 chr4A.!!$R2 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 948 0.034089 CCGCCTTTTCCCTGAATCCT 60.034 55.0 0.0 0.0 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2637 2724 1.005037 ACCGCACATCGAGAAGCAA 60.005 52.632 6.57 0.0 41.67 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.301897 TGATCATATAGCTGACATAGTAGTTGT 57.698 33.333 0.00 0.00 0.00 3.32
29 30 9.566530 GATCATATAGCTGACATAGTAGTTGTG 57.433 37.037 0.00 0.00 0.00 3.33
30 31 7.886338 TCATATAGCTGACATAGTAGTTGTGG 58.114 38.462 0.00 0.00 0.00 4.17
31 32 3.252974 AGCTGACATAGTAGTTGTGGC 57.747 47.619 0.00 0.00 0.00 5.01
32 33 2.567169 AGCTGACATAGTAGTTGTGGCA 59.433 45.455 0.00 0.00 34.40 4.92
33 34 2.673368 GCTGACATAGTAGTTGTGGCAC 59.327 50.000 11.55 11.55 31.88 5.01
34 35 3.864540 GCTGACATAGTAGTTGTGGCACA 60.865 47.826 17.96 17.96 31.88 4.57
35 36 4.507710 CTGACATAGTAGTTGTGGCACAT 58.492 43.478 22.73 10.27 44.52 3.21
36 37 4.503910 TGACATAGTAGTTGTGGCACATC 58.496 43.478 22.73 20.45 44.52 3.06
37 38 3.871594 GACATAGTAGTTGTGGCACATCC 59.128 47.826 22.73 14.95 44.52 3.51
38 39 3.263170 ACATAGTAGTTGTGGCACATCCA 59.737 43.478 22.73 6.96 44.52 3.41
48 49 2.571212 TGGCACATCCATCGTTTATCC 58.429 47.619 0.00 0.00 40.72 2.59
49 50 2.092699 TGGCACATCCATCGTTTATCCA 60.093 45.455 0.00 0.00 40.72 3.41
50 51 3.149196 GGCACATCCATCGTTTATCCAT 58.851 45.455 0.00 0.00 34.01 3.41
51 52 3.569701 GGCACATCCATCGTTTATCCATT 59.430 43.478 0.00 0.00 34.01 3.16
52 53 4.037923 GGCACATCCATCGTTTATCCATTT 59.962 41.667 0.00 0.00 34.01 2.32
53 54 5.451798 GGCACATCCATCGTTTATCCATTTT 60.452 40.000 0.00 0.00 34.01 1.82
54 55 5.687285 GCACATCCATCGTTTATCCATTTTC 59.313 40.000 0.00 0.00 0.00 2.29
55 56 6.680131 GCACATCCATCGTTTATCCATTTTCA 60.680 38.462 0.00 0.00 0.00 2.69
56 57 7.428020 CACATCCATCGTTTATCCATTTTCAT 58.572 34.615 0.00 0.00 0.00 2.57
57 58 8.567104 CACATCCATCGTTTATCCATTTTCATA 58.433 33.333 0.00 0.00 0.00 2.15
58 59 8.567948 ACATCCATCGTTTATCCATTTTCATAC 58.432 33.333 0.00 0.00 0.00 2.39
59 60 8.567104 CATCCATCGTTTATCCATTTTCATACA 58.433 33.333 0.00 0.00 0.00 2.29
60 61 8.690203 TCCATCGTTTATCCATTTTCATACAT 57.310 30.769 0.00 0.00 0.00 2.29
61 62 9.785982 TCCATCGTTTATCCATTTTCATACATA 57.214 29.630 0.00 0.00 0.00 2.29
78 79 8.634475 TCATACATATTACGCTAGATCATTGC 57.366 34.615 0.00 0.00 0.00 3.56
79 80 8.250332 TCATACATATTACGCTAGATCATTGCA 58.750 33.333 0.00 0.00 0.00 4.08
80 81 6.712241 ACATATTACGCTAGATCATTGCAC 57.288 37.500 0.00 0.00 0.00 4.57
81 82 6.223120 ACATATTACGCTAGATCATTGCACA 58.777 36.000 0.00 0.00 0.00 4.57
82 83 6.875726 ACATATTACGCTAGATCATTGCACAT 59.124 34.615 0.00 0.00 0.00 3.21
83 84 5.852738 ATTACGCTAGATCATTGCACATC 57.147 39.130 0.00 0.00 0.00 3.06
84 85 2.487934 ACGCTAGATCATTGCACATCC 58.512 47.619 0.00 0.00 0.00 3.51
85 86 2.103771 ACGCTAGATCATTGCACATCCT 59.896 45.455 0.00 0.00 0.00 3.24
86 87 2.479275 CGCTAGATCATTGCACATCCTG 59.521 50.000 0.00 0.00 0.00 3.86
87 88 2.812591 GCTAGATCATTGCACATCCTGG 59.187 50.000 0.00 0.00 0.00 4.45
88 89 3.746751 GCTAGATCATTGCACATCCTGGT 60.747 47.826 0.00 0.00 0.00 4.00
89 90 4.503817 GCTAGATCATTGCACATCCTGGTA 60.504 45.833 0.00 0.00 0.00 3.25
90 91 3.813443 AGATCATTGCACATCCTGGTAC 58.187 45.455 0.00 0.00 0.00 3.34
91 92 3.200605 AGATCATTGCACATCCTGGTACA 59.799 43.478 0.00 0.00 0.00 2.90
92 93 3.650281 TCATTGCACATCCTGGTACAT 57.350 42.857 0.00 0.00 38.20 2.29
93 94 3.966979 TCATTGCACATCCTGGTACATT 58.033 40.909 0.00 0.00 38.20 2.71
94 95 3.695556 TCATTGCACATCCTGGTACATTG 59.304 43.478 0.00 0.00 38.20 2.82
95 96 2.877097 TGCACATCCTGGTACATTGT 57.123 45.000 0.00 0.00 38.20 2.71
96 97 2.710377 TGCACATCCTGGTACATTGTC 58.290 47.619 0.00 0.00 38.20 3.18
97 98 2.039613 TGCACATCCTGGTACATTGTCA 59.960 45.455 0.00 0.00 38.20 3.58
98 99 2.679837 GCACATCCTGGTACATTGTCAG 59.320 50.000 0.00 0.00 38.20 3.51
99 100 3.619733 GCACATCCTGGTACATTGTCAGA 60.620 47.826 6.99 0.00 38.20 3.27
100 101 4.186926 CACATCCTGGTACATTGTCAGAG 58.813 47.826 6.99 1.13 38.20 3.35
101 102 3.198635 ACATCCTGGTACATTGTCAGAGG 59.801 47.826 6.99 4.80 38.20 3.69
102 103 1.555075 TCCTGGTACATTGTCAGAGGC 59.445 52.381 6.99 0.00 38.20 4.70
103 104 1.278985 CCTGGTACATTGTCAGAGGCA 59.721 52.381 6.99 0.00 38.20 4.75
104 105 2.092753 CCTGGTACATTGTCAGAGGCAT 60.093 50.000 6.99 0.00 38.20 4.40
105 106 3.614092 CTGGTACATTGTCAGAGGCATT 58.386 45.455 0.00 0.00 38.20 3.56
106 107 3.609853 TGGTACATTGTCAGAGGCATTC 58.390 45.455 0.00 0.00 0.00 2.67
107 108 3.008923 TGGTACATTGTCAGAGGCATTCA 59.991 43.478 0.00 0.00 0.00 2.57
108 109 4.202441 GGTACATTGTCAGAGGCATTCAT 58.798 43.478 0.00 0.00 0.00 2.57
109 110 5.104569 TGGTACATTGTCAGAGGCATTCATA 60.105 40.000 0.00 0.00 0.00 2.15
110 111 6.000219 GGTACATTGTCAGAGGCATTCATAT 59.000 40.000 0.00 0.00 0.00 1.78
111 112 7.161404 GGTACATTGTCAGAGGCATTCATATA 58.839 38.462 0.00 0.00 0.00 0.86
112 113 7.332926 GGTACATTGTCAGAGGCATTCATATAG 59.667 40.741 0.00 0.00 0.00 1.31
113 114 7.071069 ACATTGTCAGAGGCATTCATATAGA 57.929 36.000 0.00 0.00 0.00 1.98
114 115 7.160049 ACATTGTCAGAGGCATTCATATAGAG 58.840 38.462 0.00 0.00 0.00 2.43
115 116 6.737720 TTGTCAGAGGCATTCATATAGAGT 57.262 37.500 0.00 0.00 0.00 3.24
116 117 6.338214 TGTCAGAGGCATTCATATAGAGTC 57.662 41.667 0.00 0.00 0.00 3.36
117 118 5.835280 TGTCAGAGGCATTCATATAGAGTCA 59.165 40.000 0.00 0.00 0.00 3.41
118 119 6.496218 TGTCAGAGGCATTCATATAGAGTCAT 59.504 38.462 0.00 0.00 0.00 3.06
119 120 7.671398 TGTCAGAGGCATTCATATAGAGTCATA 59.329 37.037 0.00 0.00 0.00 2.15
120 121 8.694540 GTCAGAGGCATTCATATAGAGTCATAT 58.305 37.037 0.00 0.00 0.00 1.78
121 122 9.264653 TCAGAGGCATTCATATAGAGTCATATT 57.735 33.333 0.00 0.00 0.00 1.28
122 123 9.887629 CAGAGGCATTCATATAGAGTCATATTT 57.112 33.333 0.00 0.00 0.00 1.40
210 211 9.299963 TGATCATTATTCATTTTTAAAGCGGTG 57.700 29.630 0.00 0.00 0.00 4.94
211 212 9.301153 GATCATTATTCATTTTTAAAGCGGTGT 57.699 29.630 0.00 0.00 0.00 4.16
212 213 9.651913 ATCATTATTCATTTTTAAAGCGGTGTT 57.348 25.926 0.00 0.00 0.00 3.32
213 214 9.134734 TCATTATTCATTTTTAAAGCGGTGTTC 57.865 29.630 0.00 0.00 0.00 3.18
214 215 7.876896 TTATTCATTTTTAAAGCGGTGTTCC 57.123 32.000 0.00 0.00 0.00 3.62
215 216 4.920640 TCATTTTTAAAGCGGTGTTCCA 57.079 36.364 0.00 0.00 0.00 3.53
216 217 4.865776 TCATTTTTAAAGCGGTGTTCCAG 58.134 39.130 0.00 0.00 0.00 3.86
217 218 4.339814 TCATTTTTAAAGCGGTGTTCCAGT 59.660 37.500 0.00 0.00 0.00 4.00
218 219 3.701532 TTTTAAAGCGGTGTTCCAGTG 57.298 42.857 0.00 0.00 0.00 3.66
219 220 2.623878 TTAAAGCGGTGTTCCAGTGA 57.376 45.000 0.00 0.00 0.00 3.41
220 221 2.163818 TAAAGCGGTGTTCCAGTGAG 57.836 50.000 0.00 0.00 0.00 3.51
221 222 0.468226 AAAGCGGTGTTCCAGTGAGA 59.532 50.000 0.00 0.00 0.00 3.27
222 223 0.468226 AAGCGGTGTTCCAGTGAGAA 59.532 50.000 0.00 0.00 0.00 2.87
223 224 0.468226 AGCGGTGTTCCAGTGAGAAA 59.532 50.000 0.00 0.00 0.00 2.52
224 225 1.134220 AGCGGTGTTCCAGTGAGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
225 226 1.673920 GCGGTGTTCCAGTGAGAAAAA 59.326 47.619 0.00 0.00 0.00 1.94
226 227 2.287009 GCGGTGTTCCAGTGAGAAAAAG 60.287 50.000 0.00 0.00 0.00 2.27
227 228 3.202906 CGGTGTTCCAGTGAGAAAAAGA 58.797 45.455 0.00 0.00 0.00 2.52
228 229 3.815401 CGGTGTTCCAGTGAGAAAAAGAT 59.185 43.478 0.00 0.00 0.00 2.40
229 230 4.319766 CGGTGTTCCAGTGAGAAAAAGATG 60.320 45.833 0.00 0.00 0.00 2.90
230 231 4.821805 GGTGTTCCAGTGAGAAAAAGATGA 59.178 41.667 0.00 0.00 0.00 2.92
231 232 5.474876 GGTGTTCCAGTGAGAAAAAGATGAT 59.525 40.000 0.00 0.00 0.00 2.45
232 233 6.376978 GTGTTCCAGTGAGAAAAAGATGATG 58.623 40.000 0.00 0.00 0.00 3.07
233 234 6.205464 GTGTTCCAGTGAGAAAAAGATGATGA 59.795 38.462 0.00 0.00 0.00 2.92
234 235 6.772233 TGTTCCAGTGAGAAAAAGATGATGAA 59.228 34.615 0.00 0.00 0.00 2.57
235 236 7.040892 TGTTCCAGTGAGAAAAAGATGATGAAG 60.041 37.037 0.00 0.00 0.00 3.02
236 237 6.772605 TCCAGTGAGAAAAAGATGATGAAGA 58.227 36.000 0.00 0.00 0.00 2.87
237 238 6.652481 TCCAGTGAGAAAAAGATGATGAAGAC 59.348 38.462 0.00 0.00 0.00 3.01
238 239 6.654161 CCAGTGAGAAAAAGATGATGAAGACT 59.346 38.462 0.00 0.00 0.00 3.24
239 240 7.821359 CCAGTGAGAAAAAGATGATGAAGACTA 59.179 37.037 0.00 0.00 0.00 2.59
240 241 8.655092 CAGTGAGAAAAAGATGATGAAGACTAC 58.345 37.037 0.00 0.00 0.00 2.73
241 242 7.543868 AGTGAGAAAAAGATGATGAAGACTACG 59.456 37.037 0.00 0.00 0.00 3.51
242 243 7.542477 GTGAGAAAAAGATGATGAAGACTACGA 59.458 37.037 0.00 0.00 0.00 3.43
243 244 8.253810 TGAGAAAAAGATGATGAAGACTACGAT 58.746 33.333 0.00 0.00 0.00 3.73
244 245 9.092876 GAGAAAAAGATGATGAAGACTACGATT 57.907 33.333 0.00 0.00 0.00 3.34
245 246 9.092876 AGAAAAAGATGATGAAGACTACGATTC 57.907 33.333 0.00 0.00 0.00 2.52
246 247 7.778470 AAAAGATGATGAAGACTACGATTCC 57.222 36.000 0.00 0.00 0.00 3.01
247 248 5.461032 AGATGATGAAGACTACGATTCCC 57.539 43.478 0.00 0.00 0.00 3.97
248 249 5.144100 AGATGATGAAGACTACGATTCCCT 58.856 41.667 0.00 0.00 0.00 4.20
249 250 4.920640 TGATGAAGACTACGATTCCCTC 57.079 45.455 0.00 0.00 0.00 4.30
250 251 4.278310 TGATGAAGACTACGATTCCCTCA 58.722 43.478 0.00 0.00 0.00 3.86
251 252 4.098044 TGATGAAGACTACGATTCCCTCAC 59.902 45.833 0.00 0.00 0.00 3.51
252 253 3.427573 TGAAGACTACGATTCCCTCACA 58.572 45.455 0.00 0.00 0.00 3.58
253 254 3.830178 TGAAGACTACGATTCCCTCACAA 59.170 43.478 0.00 0.00 0.00 3.33
254 255 4.082190 TGAAGACTACGATTCCCTCACAAG 60.082 45.833 0.00 0.00 0.00 3.16
255 256 3.432378 AGACTACGATTCCCTCACAAGT 58.568 45.455 0.00 0.00 0.00 3.16
256 257 3.444388 AGACTACGATTCCCTCACAAGTC 59.556 47.826 0.00 0.00 0.00 3.01
257 258 3.162666 ACTACGATTCCCTCACAAGTCA 58.837 45.455 0.00 0.00 0.00 3.41
258 259 2.751166 ACGATTCCCTCACAAGTCAG 57.249 50.000 0.00 0.00 0.00 3.51
259 260 1.276421 ACGATTCCCTCACAAGTCAGG 59.724 52.381 0.00 0.00 0.00 3.86
260 261 1.550524 CGATTCCCTCACAAGTCAGGA 59.449 52.381 0.00 0.00 30.32 3.86
261 262 2.169352 CGATTCCCTCACAAGTCAGGAT 59.831 50.000 0.00 0.00 30.32 3.24
262 263 3.539604 GATTCCCTCACAAGTCAGGATG 58.460 50.000 0.00 0.00 37.54 3.51
274 275 1.194218 TCAGGATGATGCTTCGGACA 58.806 50.000 0.00 0.00 42.56 4.02
275 276 1.554617 TCAGGATGATGCTTCGGACAA 59.445 47.619 0.00 0.00 42.56 3.18
276 277 2.171237 TCAGGATGATGCTTCGGACAAT 59.829 45.455 0.00 0.00 42.56 2.71
277 278 3.387699 TCAGGATGATGCTTCGGACAATA 59.612 43.478 0.00 0.00 42.56 1.90
278 279 4.129380 CAGGATGATGCTTCGGACAATAA 58.871 43.478 0.00 0.00 39.69 1.40
279 280 4.212847 CAGGATGATGCTTCGGACAATAAG 59.787 45.833 0.00 0.00 39.69 1.73
280 281 4.101585 AGGATGATGCTTCGGACAATAAGA 59.898 41.667 0.00 0.00 0.00 2.10
281 282 4.816385 GGATGATGCTTCGGACAATAAGAA 59.184 41.667 0.00 0.00 0.00 2.52
282 283 5.296780 GGATGATGCTTCGGACAATAAGAAA 59.703 40.000 0.00 0.00 0.00 2.52
283 284 6.183360 GGATGATGCTTCGGACAATAAGAAAA 60.183 38.462 0.00 0.00 0.00 2.29
284 285 6.757897 TGATGCTTCGGACAATAAGAAAAT 57.242 33.333 0.00 0.00 0.00 1.82
285 286 7.857734 TGATGCTTCGGACAATAAGAAAATA 57.142 32.000 0.00 0.00 0.00 1.40
286 287 8.450578 TGATGCTTCGGACAATAAGAAAATAT 57.549 30.769 0.00 0.00 0.00 1.28
287 288 9.554395 TGATGCTTCGGACAATAAGAAAATATA 57.446 29.630 0.00 0.00 0.00 0.86
319 320 7.445945 AGCACCAGGATCAGAATAGTTATTAC 58.554 38.462 0.00 0.00 0.00 1.89
323 324 8.307483 ACCAGGATCAGAATAGTTATTACGATG 58.693 37.037 0.00 0.00 0.00 3.84
395 401 4.974438 ACCCACCCGCCTCCTTCA 62.974 66.667 0.00 0.00 0.00 3.02
400 406 2.147387 ACCCGCCTCCTTCACAACT 61.147 57.895 0.00 0.00 0.00 3.16
401 407 1.376037 CCCGCCTCCTTCACAACTC 60.376 63.158 0.00 0.00 0.00 3.01
437 443 1.467678 CCCAGCTCCTATCCCACGAG 61.468 65.000 0.00 0.00 0.00 4.18
454 460 0.103937 GAGCTTCTCCTGATCCCGTG 59.896 60.000 0.00 0.00 0.00 4.94
459 465 0.041238 TCTCCTGATCCCGTGGTCTT 59.959 55.000 0.00 0.00 0.00 3.01
632 640 3.610669 CCTCCCGGCTCATCTCCG 61.611 72.222 0.00 0.00 46.05 4.63
636 644 3.917760 CCGGCTCATCTCCGTCCC 61.918 72.222 0.00 0.00 45.09 4.46
648 656 2.592993 CCGTCCCTGCCTCCTTTCA 61.593 63.158 0.00 0.00 0.00 2.69
669 677 2.125269 CCGCACTAAGGTTCCCCG 60.125 66.667 0.00 0.00 35.12 5.73
671 679 2.437895 GCACTAAGGTTCCCCGGC 60.438 66.667 0.00 0.00 35.12 6.13
701 709 3.827898 CCGTCGCCACCTCTCCTC 61.828 72.222 0.00 0.00 0.00 3.71
713 721 2.235602 CTCTCCTCTCCCTCCCAGCA 62.236 65.000 0.00 0.00 0.00 4.41
716 724 2.681778 CTCTCCCTCCCAGCACGT 60.682 66.667 0.00 0.00 0.00 4.49
717 725 2.680352 TCTCCCTCCCAGCACGTC 60.680 66.667 0.00 0.00 0.00 4.34
718 726 2.997315 CTCCCTCCCAGCACGTCA 60.997 66.667 0.00 0.00 0.00 4.35
750 758 3.474570 CTCCTCCCCCTTCCAGCG 61.475 72.222 0.00 0.00 0.00 5.18
756 764 4.410400 CCCCTTCCAGCGGACCAC 62.410 72.222 0.00 0.00 0.00 4.16
777 785 4.335647 CAGCCGCACCCTTCCACT 62.336 66.667 0.00 0.00 0.00 4.00
778 786 3.570212 AGCCGCACCCTTCCACTT 61.570 61.111 0.00 0.00 0.00 3.16
779 787 3.056328 GCCGCACCCTTCCACTTC 61.056 66.667 0.00 0.00 0.00 3.01
780 788 2.359975 CCGCACCCTTCCACTTCC 60.360 66.667 0.00 0.00 0.00 3.46
781 789 2.359975 CGCACCCTTCCACTTCCC 60.360 66.667 0.00 0.00 0.00 3.97
782 790 2.843545 GCACCCTTCCACTTCCCA 59.156 61.111 0.00 0.00 0.00 4.37
783 791 1.152830 GCACCCTTCCACTTCCCAA 59.847 57.895 0.00 0.00 0.00 4.12
784 792 1.179174 GCACCCTTCCACTTCCCAAC 61.179 60.000 0.00 0.00 0.00 3.77
785 793 0.184933 CACCCTTCCACTTCCCAACA 59.815 55.000 0.00 0.00 0.00 3.33
786 794 1.158007 ACCCTTCCACTTCCCAACAT 58.842 50.000 0.00 0.00 0.00 2.71
787 795 1.075536 ACCCTTCCACTTCCCAACATC 59.924 52.381 0.00 0.00 0.00 3.06
788 796 1.616994 CCCTTCCACTTCCCAACATCC 60.617 57.143 0.00 0.00 0.00 3.51
789 797 1.355720 CCTTCCACTTCCCAACATCCT 59.644 52.381 0.00 0.00 0.00 3.24
790 798 2.619074 CCTTCCACTTCCCAACATCCTC 60.619 54.545 0.00 0.00 0.00 3.71
791 799 0.991920 TCCACTTCCCAACATCCTCC 59.008 55.000 0.00 0.00 0.00 4.30
792 800 0.392998 CCACTTCCCAACATCCTCCG 60.393 60.000 0.00 0.00 0.00 4.63
793 801 0.392998 CACTTCCCAACATCCTCCGG 60.393 60.000 0.00 0.00 0.00 5.14
794 802 1.452108 CTTCCCAACATCCTCCGGC 60.452 63.158 0.00 0.00 0.00 6.13
795 803 3.323758 TTCCCAACATCCTCCGGCG 62.324 63.158 0.00 0.00 0.00 6.46
796 804 3.781307 CCCAACATCCTCCGGCGA 61.781 66.667 9.30 0.00 0.00 5.54
797 805 2.505982 CCAACATCCTCCGGCGAT 59.494 61.111 9.30 0.00 0.00 4.58
798 806 1.889105 CCAACATCCTCCGGCGATG 60.889 63.158 22.68 22.68 42.37 3.84
799 807 2.203070 AACATCCTCCGGCGATGC 60.203 61.111 23.68 0.00 40.70 3.91
800 808 4.592192 ACATCCTCCGGCGATGCG 62.592 66.667 23.68 8.52 40.70 4.73
821 829 4.772687 GCCCTTCCCGTCCCGAAC 62.773 72.222 0.00 0.00 0.00 3.95
822 830 4.091939 CCCTTCCCGTCCCGAACC 62.092 72.222 0.00 0.00 0.00 3.62
823 831 4.091939 CCTTCCCGTCCCGAACCC 62.092 72.222 0.00 0.00 0.00 4.11
824 832 4.091939 CTTCCCGTCCCGAACCCC 62.092 72.222 0.00 0.00 0.00 4.95
833 841 3.846430 CCGAACCCCGCCTCCTAC 61.846 72.222 0.00 0.00 36.84 3.18
834 842 4.203076 CGAACCCCGCCTCCTACG 62.203 72.222 0.00 0.00 0.00 3.51
835 843 4.525949 GAACCCCGCCTCCTACGC 62.526 72.222 0.00 0.00 0.00 4.42
898 906 4.256090 GCCGCCATGCATCCGTTC 62.256 66.667 13.39 3.76 0.00 3.95
899 907 3.585990 CCGCCATGCATCCGTTCC 61.586 66.667 13.39 0.00 0.00 3.62
900 908 2.514592 CGCCATGCATCCGTTCCT 60.515 61.111 0.00 0.00 0.00 3.36
901 909 2.537560 CGCCATGCATCCGTTCCTC 61.538 63.158 0.00 0.00 0.00 3.71
902 910 2.189499 GCCATGCATCCGTTCCTCC 61.189 63.158 0.00 0.00 0.00 4.30
903 911 1.528824 CCATGCATCCGTTCCTCCT 59.471 57.895 0.00 0.00 0.00 3.69
904 912 0.533755 CCATGCATCCGTTCCTCCTC 60.534 60.000 0.00 0.00 0.00 3.71
905 913 0.533755 CATGCATCCGTTCCTCCTCC 60.534 60.000 0.00 0.00 0.00 4.30
906 914 2.032860 ATGCATCCGTTCCTCCTCCG 62.033 60.000 0.00 0.00 0.00 4.63
907 915 2.722201 GCATCCGTTCCTCCTCCGT 61.722 63.158 0.00 0.00 0.00 4.69
908 916 1.898154 CATCCGTTCCTCCTCCGTT 59.102 57.895 0.00 0.00 0.00 4.44
909 917 0.460284 CATCCGTTCCTCCTCCGTTG 60.460 60.000 0.00 0.00 0.00 4.10
910 918 1.614241 ATCCGTTCCTCCTCCGTTGG 61.614 60.000 0.00 0.00 0.00 3.77
911 919 2.280552 CCGTTCCTCCTCCGTTGGA 61.281 63.158 0.00 0.00 34.52 3.53
912 920 1.614241 CCGTTCCTCCTCCGTTGGAT 61.614 60.000 0.00 0.00 35.30 3.41
913 921 1.108776 CGTTCCTCCTCCGTTGGATA 58.891 55.000 0.00 0.00 35.30 2.59
914 922 1.687123 CGTTCCTCCTCCGTTGGATAT 59.313 52.381 0.00 0.00 35.30 1.63
915 923 2.545952 CGTTCCTCCTCCGTTGGATATG 60.546 54.545 0.00 0.00 35.30 1.78
916 924 2.434702 GTTCCTCCTCCGTTGGATATGT 59.565 50.000 0.00 0.00 35.30 2.29
917 925 2.039418 TCCTCCTCCGTTGGATATGTG 58.961 52.381 0.00 0.00 35.30 3.21
918 926 1.762957 CCTCCTCCGTTGGATATGTGT 59.237 52.381 0.00 0.00 35.30 3.72
919 927 2.170607 CCTCCTCCGTTGGATATGTGTT 59.829 50.000 0.00 0.00 35.30 3.32
920 928 3.198068 CTCCTCCGTTGGATATGTGTTG 58.802 50.000 0.00 0.00 35.30 3.33
921 929 1.670811 CCTCCGTTGGATATGTGTTGC 59.329 52.381 0.00 0.00 0.00 4.17
922 930 1.670811 CTCCGTTGGATATGTGTTGCC 59.329 52.381 0.00 0.00 0.00 4.52
923 931 0.376852 CCGTTGGATATGTGTTGCCG 59.623 55.000 0.00 0.00 0.00 5.69
924 932 0.248054 CGTTGGATATGTGTTGCCGC 60.248 55.000 0.00 0.00 0.00 6.53
925 933 0.100503 GTTGGATATGTGTTGCCGCC 59.899 55.000 0.00 0.00 0.00 6.13
926 934 0.034574 TTGGATATGTGTTGCCGCCT 60.035 50.000 0.00 0.00 0.00 5.52
927 935 0.034574 TGGATATGTGTTGCCGCCTT 60.035 50.000 0.00 0.00 0.00 4.35
928 936 1.102978 GGATATGTGTTGCCGCCTTT 58.897 50.000 0.00 0.00 0.00 3.11
929 937 1.476488 GGATATGTGTTGCCGCCTTTT 59.524 47.619 0.00 0.00 0.00 2.27
930 938 2.479560 GGATATGTGTTGCCGCCTTTTC 60.480 50.000 0.00 0.00 0.00 2.29
931 939 0.885196 TATGTGTTGCCGCCTTTTCC 59.115 50.000 0.00 0.00 0.00 3.13
932 940 1.815817 ATGTGTTGCCGCCTTTTCCC 61.816 55.000 0.00 0.00 0.00 3.97
933 941 2.197324 TGTTGCCGCCTTTTCCCT 59.803 55.556 0.00 0.00 0.00 4.20
934 942 2.199652 TGTTGCCGCCTTTTCCCTG 61.200 57.895 0.00 0.00 0.00 4.45
935 943 1.901464 GTTGCCGCCTTTTCCCTGA 60.901 57.895 0.00 0.00 0.00 3.86
936 944 1.152652 TTGCCGCCTTTTCCCTGAA 60.153 52.632 0.00 0.00 0.00 3.02
937 945 0.541764 TTGCCGCCTTTTCCCTGAAT 60.542 50.000 0.00 0.00 0.00 2.57
938 946 0.965363 TGCCGCCTTTTCCCTGAATC 60.965 55.000 0.00 0.00 0.00 2.52
939 947 1.667154 GCCGCCTTTTCCCTGAATCC 61.667 60.000 0.00 0.00 0.00 3.01
940 948 0.034089 CCGCCTTTTCCCTGAATCCT 60.034 55.000 0.00 0.00 0.00 3.24
941 949 1.616994 CCGCCTTTTCCCTGAATCCTT 60.617 52.381 0.00 0.00 0.00 3.36
942 950 1.474077 CGCCTTTTCCCTGAATCCTTG 59.526 52.381 0.00 0.00 0.00 3.61
943 951 2.807676 GCCTTTTCCCTGAATCCTTGA 58.192 47.619 0.00 0.00 0.00 3.02
944 952 3.369175 GCCTTTTCCCTGAATCCTTGAT 58.631 45.455 0.00 0.00 0.00 2.57
945 953 3.131755 GCCTTTTCCCTGAATCCTTGATG 59.868 47.826 0.00 0.00 0.00 3.07
946 954 3.131755 CCTTTTCCCTGAATCCTTGATGC 59.868 47.826 0.00 0.00 0.00 3.91
947 955 2.442236 TTCCCTGAATCCTTGATGCC 57.558 50.000 0.00 0.00 0.00 4.40
948 956 1.297968 TCCCTGAATCCTTGATGCCA 58.702 50.000 0.00 0.00 0.00 4.92
949 957 1.064463 TCCCTGAATCCTTGATGCCAC 60.064 52.381 0.00 0.00 0.00 5.01
950 958 1.396653 CCTGAATCCTTGATGCCACC 58.603 55.000 0.00 0.00 0.00 4.61
951 959 1.341285 CCTGAATCCTTGATGCCACCA 60.341 52.381 0.00 0.00 0.00 4.17
952 960 2.449464 CTGAATCCTTGATGCCACCAA 58.551 47.619 0.00 0.00 0.00 3.67
953 961 3.028850 CTGAATCCTTGATGCCACCAAT 58.971 45.455 0.00 0.00 0.00 3.16
954 962 3.025978 TGAATCCTTGATGCCACCAATC 58.974 45.455 0.00 0.00 0.00 2.67
955 963 1.683943 ATCCTTGATGCCACCAATCG 58.316 50.000 0.00 0.00 0.00 3.34
956 964 0.617935 TCCTTGATGCCACCAATCGA 59.382 50.000 0.00 0.00 0.00 3.59
957 965 0.734889 CCTTGATGCCACCAATCGAC 59.265 55.000 0.00 0.00 0.00 4.20
958 966 0.374758 CTTGATGCCACCAATCGACG 59.625 55.000 0.00 0.00 0.00 5.12
959 967 0.321210 TTGATGCCACCAATCGACGT 60.321 50.000 0.00 0.00 0.00 4.34
960 968 1.018752 TGATGCCACCAATCGACGTG 61.019 55.000 0.00 0.00 0.00 4.49
961 969 1.003839 ATGCCACCAATCGACGTGT 60.004 52.632 0.00 0.00 0.00 4.49
962 970 0.605319 ATGCCACCAATCGACGTGTT 60.605 50.000 0.00 0.00 0.00 3.32
963 971 1.206578 GCCACCAATCGACGTGTTG 59.793 57.895 0.00 1.89 0.00 3.33
964 972 1.225376 GCCACCAATCGACGTGTTGA 61.225 55.000 14.30 0.00 0.00 3.18
965 973 0.511221 CCACCAATCGACGTGTTGAC 59.489 55.000 14.30 0.00 0.00 3.18
966 974 1.213491 CACCAATCGACGTGTTGACA 58.787 50.000 14.30 0.00 0.00 3.58
1020 1028 4.779733 GCGGAGGAGGAGGGGACA 62.780 72.222 0.00 0.00 0.00 4.02
1029 1037 2.753029 GAGGGGACACAGCAGCTT 59.247 61.111 0.00 0.00 0.00 3.74
1154 1162 2.628696 CCAAGTGCGCCATCAAGCA 61.629 57.895 4.18 0.00 41.55 3.91
1233 1241 2.584608 CGCCTCAAGGTCCGGAAT 59.415 61.111 5.23 0.00 37.57 3.01
1266 1274 3.127533 GCCATCGACGCCAAGCTT 61.128 61.111 0.00 0.00 0.00 3.74
1367 1395 4.926832 TCGCGATTAACATCAAACTCTTCA 59.073 37.500 3.71 0.00 0.00 3.02
1620 1654 6.456795 TGAATGTTGTTAATTGGTGTCACA 57.543 33.333 5.12 0.00 0.00 3.58
1855 1929 1.545841 AGGCGTGTCAGTGATCTGTA 58.454 50.000 0.00 0.00 41.91 2.74
1875 1949 4.927425 TGTACCTGTTAGCTTTCTTTAGCG 59.073 41.667 0.00 0.00 45.82 4.26
1887 1961 6.311690 AGCTTTCTTTAGCGAGTTCTACAATC 59.688 38.462 0.00 0.00 45.82 2.67
1944 2019 4.518249 TGGACCAATAATATGTTGTCGCA 58.482 39.130 0.00 0.00 0.00 5.10
1992 2067 4.798387 CAGGCATTTAACTATTTTGGCGTC 59.202 41.667 0.00 0.00 37.87 5.19
2230 2309 3.944422 ATCAACACACACGTTCTGAAC 57.056 42.857 10.48 10.48 0.00 3.18
2231 2310 2.689646 TCAACACACACGTTCTGAACA 58.310 42.857 19.56 0.00 0.00 3.18
2232 2311 3.067833 TCAACACACACGTTCTGAACAA 58.932 40.909 19.56 0.00 0.00 2.83
2274 2358 2.171840 ACTACGGCAATGTGAGAGACT 58.828 47.619 0.00 0.00 0.00 3.24
2488 2575 2.673368 CAATCTCCGCTGTTTCTACACC 59.327 50.000 0.00 0.00 0.00 4.16
2550 2637 3.198635 ACATGTTGTACTAGGCATGCTCT 59.801 43.478 18.92 15.14 41.51 4.09
2607 2694 0.673437 CCGTTTCAGGGCAAATGTGT 59.327 50.000 0.00 0.00 0.00 3.72
2635 2722 1.687368 GGCAGCAAGGATTTGGGATCT 60.687 52.381 0.00 0.00 34.79 2.75
2637 2724 2.731572 CAGCAAGGATTTGGGATCTGT 58.268 47.619 0.00 0.00 34.79 3.41
2655 2742 1.005037 TTGCTTCTCGATGTGCGGT 60.005 52.632 0.00 0.00 41.33 5.68
2690 2777 2.776536 ACTTGATTGCTCAGGCCTCTAT 59.223 45.455 0.00 0.00 37.74 1.98
2832 2926 7.301054 CGTGTGAGCAAGAGAAAAAGAATATT 58.699 34.615 0.00 0.00 0.00 1.28
2834 2928 9.468532 GTGTGAGCAAGAGAAAAAGAATATTTT 57.531 29.630 0.00 0.00 35.29 1.82
2862 2956 5.014858 AGAAGTTCGTGTATCACTTCCCTA 58.985 41.667 7.50 0.00 45.14 3.53
2889 2983 8.337739 AGAGTTCTTGTATTACTCCCTAGAGAA 58.662 37.037 0.00 0.00 43.39 2.87
2966 3063 8.994170 TGTATGTTTTCGAAACTACAATGATCA 58.006 29.630 16.90 0.00 0.00 2.92
3151 3288 5.990408 AGAAAAGTAGCAGTTCGATGTTTG 58.010 37.500 0.00 0.00 0.00 2.93
3270 3416 6.737118 TCTTTAAAAGGATTTACGCCGTTTT 58.263 32.000 0.00 0.00 37.28 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.301897 ACAACTACTATGTCAGCTATATGATCA 57.698 33.333 0.00 0.00 0.00 2.92
3 4 9.566530 CACAACTACTATGTCAGCTATATGATC 57.433 37.037 0.00 0.00 0.00 2.92
4 5 8.526978 CCACAACTACTATGTCAGCTATATGAT 58.473 37.037 0.00 0.00 0.00 2.45
6 7 6.587990 GCCACAACTACTATGTCAGCTATATG 59.412 42.308 0.00 0.00 0.00 1.78
7 8 6.267699 TGCCACAACTACTATGTCAGCTATAT 59.732 38.462 0.00 0.00 31.55 0.86
8 9 5.596772 TGCCACAACTACTATGTCAGCTATA 59.403 40.000 0.00 0.00 31.55 1.31
9 10 4.405680 TGCCACAACTACTATGTCAGCTAT 59.594 41.667 0.00 0.00 31.55 2.97
10 11 3.767131 TGCCACAACTACTATGTCAGCTA 59.233 43.478 0.00 0.00 31.55 3.32
11 12 2.567169 TGCCACAACTACTATGTCAGCT 59.433 45.455 0.00 0.00 31.55 4.24
12 13 2.673368 GTGCCACAACTACTATGTCAGC 59.327 50.000 0.00 0.00 0.00 4.26
13 14 3.925379 TGTGCCACAACTACTATGTCAG 58.075 45.455 0.00 0.00 0.00 3.51
14 15 4.503910 GATGTGCCACAACTACTATGTCA 58.496 43.478 0.00 0.00 0.00 3.58
15 16 3.871594 GGATGTGCCACAACTACTATGTC 59.128 47.826 0.00 0.00 36.34 3.06
16 17 3.263170 TGGATGTGCCACAACTACTATGT 59.737 43.478 0.00 0.00 43.33 2.29
17 18 3.872696 TGGATGTGCCACAACTACTATG 58.127 45.455 0.00 0.00 43.33 2.23
29 30 2.571212 TGGATAAACGATGGATGTGCC 58.429 47.619 0.00 0.00 37.10 5.01
30 31 4.836125 AATGGATAAACGATGGATGTGC 57.164 40.909 0.00 0.00 0.00 4.57
31 32 6.794374 TGAAAATGGATAAACGATGGATGTG 58.206 36.000 0.00 0.00 0.00 3.21
32 33 7.587037 ATGAAAATGGATAAACGATGGATGT 57.413 32.000 0.00 0.00 0.00 3.06
33 34 8.567104 TGTATGAAAATGGATAAACGATGGATG 58.433 33.333 0.00 0.00 0.00 3.51
34 35 8.690203 TGTATGAAAATGGATAAACGATGGAT 57.310 30.769 0.00 0.00 0.00 3.41
35 36 8.690203 ATGTATGAAAATGGATAAACGATGGA 57.310 30.769 0.00 0.00 0.00 3.41
52 53 9.087424 GCAATGATCTAGCGTAATATGTATGAA 57.913 33.333 0.00 0.00 0.00 2.57
53 54 8.250332 TGCAATGATCTAGCGTAATATGTATGA 58.750 33.333 0.00 0.00 0.00 2.15
54 55 8.323854 GTGCAATGATCTAGCGTAATATGTATG 58.676 37.037 0.00 0.00 0.00 2.39
55 56 8.034804 TGTGCAATGATCTAGCGTAATATGTAT 58.965 33.333 0.00 0.00 0.00 2.29
56 57 7.375053 TGTGCAATGATCTAGCGTAATATGTA 58.625 34.615 0.00 0.00 0.00 2.29
57 58 6.223120 TGTGCAATGATCTAGCGTAATATGT 58.777 36.000 0.00 0.00 0.00 2.29
58 59 6.710692 TGTGCAATGATCTAGCGTAATATG 57.289 37.500 0.00 0.00 0.00 1.78
59 60 6.536582 GGATGTGCAATGATCTAGCGTAATAT 59.463 38.462 0.00 0.00 0.00 1.28
60 61 5.869344 GGATGTGCAATGATCTAGCGTAATA 59.131 40.000 0.00 0.00 0.00 0.98
61 62 4.692625 GGATGTGCAATGATCTAGCGTAAT 59.307 41.667 0.00 0.00 0.00 1.89
62 63 4.058124 GGATGTGCAATGATCTAGCGTAA 58.942 43.478 0.00 0.00 0.00 3.18
63 64 3.321968 AGGATGTGCAATGATCTAGCGTA 59.678 43.478 0.00 0.00 0.00 4.42
64 65 2.103771 AGGATGTGCAATGATCTAGCGT 59.896 45.455 0.00 0.00 0.00 5.07
65 66 2.479275 CAGGATGTGCAATGATCTAGCG 59.521 50.000 0.00 0.00 0.00 4.26
66 67 2.812591 CCAGGATGTGCAATGATCTAGC 59.187 50.000 0.00 0.00 0.00 3.42
67 68 4.082665 ACCAGGATGTGCAATGATCTAG 57.917 45.455 0.00 0.00 0.00 2.43
68 69 4.408596 TGTACCAGGATGTGCAATGATCTA 59.591 41.667 0.00 0.00 0.00 1.98
69 70 3.200605 TGTACCAGGATGTGCAATGATCT 59.799 43.478 0.00 0.00 0.00 2.75
70 71 3.544684 TGTACCAGGATGTGCAATGATC 58.455 45.455 0.00 0.00 0.00 2.92
71 72 3.650281 TGTACCAGGATGTGCAATGAT 57.350 42.857 0.00 0.00 0.00 2.45
72 73 3.650281 ATGTACCAGGATGTGCAATGA 57.350 42.857 0.00 0.00 34.50 2.57
73 74 3.444742 ACAATGTACCAGGATGTGCAATG 59.555 43.478 0.00 0.00 37.64 2.82
74 75 3.696051 GACAATGTACCAGGATGTGCAAT 59.304 43.478 0.00 0.00 34.50 3.56
75 76 3.081061 GACAATGTACCAGGATGTGCAA 58.919 45.455 0.00 0.00 34.50 4.08
76 77 2.039613 TGACAATGTACCAGGATGTGCA 59.960 45.455 0.00 0.00 35.31 4.57
77 78 2.679837 CTGACAATGTACCAGGATGTGC 59.320 50.000 0.00 0.00 0.00 4.57
78 79 4.186926 CTCTGACAATGTACCAGGATGTG 58.813 47.826 0.00 0.00 0.00 3.21
79 80 3.198635 CCTCTGACAATGTACCAGGATGT 59.801 47.826 0.00 0.00 0.00 3.06
80 81 3.801698 CCTCTGACAATGTACCAGGATG 58.198 50.000 0.00 0.00 0.00 3.51
81 82 2.171448 GCCTCTGACAATGTACCAGGAT 59.829 50.000 7.86 0.00 0.00 3.24
82 83 1.555075 GCCTCTGACAATGTACCAGGA 59.445 52.381 7.86 0.00 0.00 3.86
83 84 1.278985 TGCCTCTGACAATGTACCAGG 59.721 52.381 2.83 1.81 0.00 4.45
84 85 2.768253 TGCCTCTGACAATGTACCAG 57.232 50.000 0.00 0.00 0.00 4.00
85 86 3.008923 TGAATGCCTCTGACAATGTACCA 59.991 43.478 0.00 0.00 0.00 3.25
86 87 3.609853 TGAATGCCTCTGACAATGTACC 58.390 45.455 0.00 0.00 0.00 3.34
87 88 8.090831 TCTATATGAATGCCTCTGACAATGTAC 58.909 37.037 0.00 0.00 0.00 2.90
88 89 8.193953 TCTATATGAATGCCTCTGACAATGTA 57.806 34.615 0.00 0.00 0.00 2.29
89 90 7.071069 TCTATATGAATGCCTCTGACAATGT 57.929 36.000 0.00 0.00 0.00 2.71
90 91 7.160049 ACTCTATATGAATGCCTCTGACAATG 58.840 38.462 0.00 0.00 0.00 2.82
91 92 7.015974 TGACTCTATATGAATGCCTCTGACAAT 59.984 37.037 0.00 0.00 0.00 2.71
92 93 6.324770 TGACTCTATATGAATGCCTCTGACAA 59.675 38.462 0.00 0.00 0.00 3.18
93 94 5.835280 TGACTCTATATGAATGCCTCTGACA 59.165 40.000 0.00 0.00 0.00 3.58
94 95 6.338214 TGACTCTATATGAATGCCTCTGAC 57.662 41.667 0.00 0.00 0.00 3.51
95 96 8.835550 ATATGACTCTATATGAATGCCTCTGA 57.164 34.615 0.00 0.00 0.00 3.27
96 97 9.887629 AAATATGACTCTATATGAATGCCTCTG 57.112 33.333 0.00 0.00 0.00 3.35
184 185 9.299963 CACCGCTTTAAAAATGAATAATGATCA 57.700 29.630 0.00 0.00 0.00 2.92
185 186 9.301153 ACACCGCTTTAAAAATGAATAATGATC 57.699 29.630 0.00 0.00 0.00 2.92
186 187 9.651913 AACACCGCTTTAAAAATGAATAATGAT 57.348 25.926 0.00 0.00 0.00 2.45
187 188 9.134734 GAACACCGCTTTAAAAATGAATAATGA 57.865 29.630 0.00 0.00 0.00 2.57
188 189 8.379902 GGAACACCGCTTTAAAAATGAATAATG 58.620 33.333 0.00 0.00 0.00 1.90
189 190 8.091449 TGGAACACCGCTTTAAAAATGAATAAT 58.909 29.630 0.00 0.00 0.00 1.28
190 191 7.434492 TGGAACACCGCTTTAAAAATGAATAA 58.566 30.769 0.00 0.00 0.00 1.40
191 192 6.982852 TGGAACACCGCTTTAAAAATGAATA 58.017 32.000 0.00 0.00 0.00 1.75
192 193 5.848406 TGGAACACCGCTTTAAAAATGAAT 58.152 33.333 0.00 0.00 0.00 2.57
193 194 5.163499 ACTGGAACACCGCTTTAAAAATGAA 60.163 36.000 0.00 0.00 0.00 2.57
194 195 4.339814 ACTGGAACACCGCTTTAAAAATGA 59.660 37.500 0.00 0.00 0.00 2.57
195 196 4.444056 CACTGGAACACCGCTTTAAAAATG 59.556 41.667 0.00 0.00 0.00 2.32
196 197 4.339814 TCACTGGAACACCGCTTTAAAAAT 59.660 37.500 0.00 0.00 0.00 1.82
197 198 3.695060 TCACTGGAACACCGCTTTAAAAA 59.305 39.130 0.00 0.00 0.00 1.94
198 199 3.280295 TCACTGGAACACCGCTTTAAAA 58.720 40.909 0.00 0.00 0.00 1.52
199 200 2.875933 CTCACTGGAACACCGCTTTAAA 59.124 45.455 0.00 0.00 0.00 1.52
200 201 2.103432 TCTCACTGGAACACCGCTTTAA 59.897 45.455 0.00 0.00 0.00 1.52
201 202 1.689813 TCTCACTGGAACACCGCTTTA 59.310 47.619 0.00 0.00 0.00 1.85
202 203 0.468226 TCTCACTGGAACACCGCTTT 59.532 50.000 0.00 0.00 0.00 3.51
203 204 0.468226 TTCTCACTGGAACACCGCTT 59.532 50.000 0.00 0.00 0.00 4.68
204 205 0.468226 TTTCTCACTGGAACACCGCT 59.532 50.000 0.00 0.00 0.00 5.52
205 206 1.305201 TTTTCTCACTGGAACACCGC 58.695 50.000 0.00 0.00 0.00 5.68
206 207 3.202906 TCTTTTTCTCACTGGAACACCG 58.797 45.455 0.00 0.00 0.00 4.94
207 208 4.821805 TCATCTTTTTCTCACTGGAACACC 59.178 41.667 0.00 0.00 0.00 4.16
208 209 6.205464 TCATCATCTTTTTCTCACTGGAACAC 59.795 38.462 0.00 0.00 0.00 3.32
209 210 6.298361 TCATCATCTTTTTCTCACTGGAACA 58.702 36.000 0.00 0.00 0.00 3.18
210 211 6.808008 TCATCATCTTTTTCTCACTGGAAC 57.192 37.500 0.00 0.00 0.00 3.62
211 212 7.173907 GTCTTCATCATCTTTTTCTCACTGGAA 59.826 37.037 0.00 0.00 0.00 3.53
212 213 6.652481 GTCTTCATCATCTTTTTCTCACTGGA 59.348 38.462 0.00 0.00 0.00 3.86
213 214 6.654161 AGTCTTCATCATCTTTTTCTCACTGG 59.346 38.462 0.00 0.00 0.00 4.00
214 215 7.670009 AGTCTTCATCATCTTTTTCTCACTG 57.330 36.000 0.00 0.00 0.00 3.66
215 216 7.543868 CGTAGTCTTCATCATCTTTTTCTCACT 59.456 37.037 0.00 0.00 0.00 3.41
216 217 7.542477 TCGTAGTCTTCATCATCTTTTTCTCAC 59.458 37.037 0.00 0.00 0.00 3.51
217 218 7.602753 TCGTAGTCTTCATCATCTTTTTCTCA 58.397 34.615 0.00 0.00 0.00 3.27
218 219 8.641499 ATCGTAGTCTTCATCATCTTTTTCTC 57.359 34.615 0.00 0.00 0.00 2.87
219 220 9.092876 GAATCGTAGTCTTCATCATCTTTTTCT 57.907 33.333 0.00 0.00 0.00 2.52
220 221 8.331742 GGAATCGTAGTCTTCATCATCTTTTTC 58.668 37.037 0.00 0.00 0.00 2.29
221 222 7.281100 GGGAATCGTAGTCTTCATCATCTTTTT 59.719 37.037 0.00 0.00 0.00 1.94
222 223 6.763610 GGGAATCGTAGTCTTCATCATCTTTT 59.236 38.462 0.00 0.00 0.00 2.27
223 224 6.098982 AGGGAATCGTAGTCTTCATCATCTTT 59.901 38.462 0.00 0.00 0.00 2.52
224 225 5.600484 AGGGAATCGTAGTCTTCATCATCTT 59.400 40.000 0.00 0.00 0.00 2.40
225 226 5.144100 AGGGAATCGTAGTCTTCATCATCT 58.856 41.667 0.00 0.00 0.00 2.90
226 227 5.010112 TGAGGGAATCGTAGTCTTCATCATC 59.990 44.000 0.00 0.00 0.00 2.92
227 228 4.895889 TGAGGGAATCGTAGTCTTCATCAT 59.104 41.667 0.00 0.00 0.00 2.45
228 229 4.098044 GTGAGGGAATCGTAGTCTTCATCA 59.902 45.833 0.00 0.00 0.00 3.07
229 230 4.098044 TGTGAGGGAATCGTAGTCTTCATC 59.902 45.833 0.00 0.00 0.00 2.92
230 231 4.023980 TGTGAGGGAATCGTAGTCTTCAT 58.976 43.478 0.00 0.00 0.00 2.57
231 232 3.427573 TGTGAGGGAATCGTAGTCTTCA 58.572 45.455 0.00 0.00 0.00 3.02
232 233 4.082136 ACTTGTGAGGGAATCGTAGTCTTC 60.082 45.833 0.00 0.00 0.00 2.87
233 234 3.833070 ACTTGTGAGGGAATCGTAGTCTT 59.167 43.478 0.00 0.00 0.00 3.01
234 235 3.432378 ACTTGTGAGGGAATCGTAGTCT 58.568 45.455 0.00 0.00 0.00 3.24
235 236 3.192844 TGACTTGTGAGGGAATCGTAGTC 59.807 47.826 0.00 0.00 34.93 2.59
236 237 3.162666 TGACTTGTGAGGGAATCGTAGT 58.837 45.455 0.00 0.00 0.00 2.73
237 238 3.429547 CCTGACTTGTGAGGGAATCGTAG 60.430 52.174 0.00 0.00 0.00 3.51
238 239 2.496070 CCTGACTTGTGAGGGAATCGTA 59.504 50.000 0.00 0.00 0.00 3.43
239 240 1.276421 CCTGACTTGTGAGGGAATCGT 59.724 52.381 0.00 0.00 0.00 3.73
240 241 1.550524 TCCTGACTTGTGAGGGAATCG 59.449 52.381 6.44 0.00 0.00 3.34
241 242 3.198635 TCATCCTGACTTGTGAGGGAATC 59.801 47.826 6.44 0.00 0.00 2.52
242 243 3.184628 TCATCCTGACTTGTGAGGGAAT 58.815 45.455 6.44 0.00 0.00 3.01
243 244 2.619931 TCATCCTGACTTGTGAGGGAA 58.380 47.619 6.44 0.00 0.00 3.97
244 245 2.325661 TCATCCTGACTTGTGAGGGA 57.674 50.000 6.44 0.00 0.00 4.20
245 246 2.915349 CATCATCCTGACTTGTGAGGG 58.085 52.381 6.44 0.00 0.00 4.30
246 247 2.093075 AGCATCATCCTGACTTGTGAGG 60.093 50.000 0.00 0.00 0.00 3.86
247 248 3.263489 AGCATCATCCTGACTTGTGAG 57.737 47.619 0.00 0.00 0.00 3.51
248 249 3.603532 GAAGCATCATCCTGACTTGTGA 58.396 45.455 0.00 0.00 0.00 3.58
249 250 2.350804 CGAAGCATCATCCTGACTTGTG 59.649 50.000 0.00 0.00 0.00 3.33
250 251 2.625737 CGAAGCATCATCCTGACTTGT 58.374 47.619 0.00 0.00 0.00 3.16
251 252 1.938577 CCGAAGCATCATCCTGACTTG 59.061 52.381 0.00 0.00 0.00 3.16
252 253 1.833630 TCCGAAGCATCATCCTGACTT 59.166 47.619 0.00 0.00 0.00 3.01
253 254 1.137872 GTCCGAAGCATCATCCTGACT 59.862 52.381 0.00 0.00 0.00 3.41
254 255 1.134699 TGTCCGAAGCATCATCCTGAC 60.135 52.381 0.00 0.00 0.00 3.51
255 256 1.194218 TGTCCGAAGCATCATCCTGA 58.806 50.000 0.00 0.00 0.00 3.86
256 257 2.028420 TTGTCCGAAGCATCATCCTG 57.972 50.000 0.00 0.00 0.00 3.86
257 258 4.101585 TCTTATTGTCCGAAGCATCATCCT 59.898 41.667 0.00 0.00 0.00 3.24
258 259 4.380531 TCTTATTGTCCGAAGCATCATCC 58.619 43.478 0.00 0.00 0.00 3.51
259 260 5.991328 TTCTTATTGTCCGAAGCATCATC 57.009 39.130 0.00 0.00 0.00 2.92
260 261 6.757897 TTTTCTTATTGTCCGAAGCATCAT 57.242 33.333 0.00 0.00 0.00 2.45
261 262 6.757897 ATTTTCTTATTGTCCGAAGCATCA 57.242 33.333 0.00 0.00 0.00 3.07
286 287 9.634021 CTATTCTGATCCTGGTGCTACTATATA 57.366 37.037 0.00 0.00 0.00 0.86
287 288 8.119246 ACTATTCTGATCCTGGTGCTACTATAT 58.881 37.037 0.00 0.00 0.00 0.86
288 289 7.471041 ACTATTCTGATCCTGGTGCTACTATA 58.529 38.462 0.00 0.00 0.00 1.31
289 290 6.318913 ACTATTCTGATCCTGGTGCTACTAT 58.681 40.000 0.00 0.00 0.00 2.12
290 291 5.706447 ACTATTCTGATCCTGGTGCTACTA 58.294 41.667 0.00 0.00 0.00 1.82
291 292 4.551671 ACTATTCTGATCCTGGTGCTACT 58.448 43.478 0.00 0.00 0.00 2.57
292 293 4.946478 ACTATTCTGATCCTGGTGCTAC 57.054 45.455 0.00 0.00 0.00 3.58
293 294 7.618019 AATAACTATTCTGATCCTGGTGCTA 57.382 36.000 0.00 0.00 0.00 3.49
294 295 6.506538 AATAACTATTCTGATCCTGGTGCT 57.493 37.500 0.00 0.00 0.00 4.40
295 296 6.366332 CGTAATAACTATTCTGATCCTGGTGC 59.634 42.308 0.00 0.00 0.00 5.01
296 297 7.658261 TCGTAATAACTATTCTGATCCTGGTG 58.342 38.462 0.00 0.00 0.00 4.17
297 298 7.834881 TCGTAATAACTATTCTGATCCTGGT 57.165 36.000 0.00 0.00 0.00 4.00
319 320 4.211584 CCTATATAGGGTCGATCGTCATCG 59.788 50.000 19.74 0.31 44.90 3.84
323 324 2.617774 GGCCTATATAGGGTCGATCGTC 59.382 54.545 26.76 9.66 43.82 4.20
330 331 3.896272 CCTAATCGGGCCTATATAGGGTC 59.104 52.174 26.76 13.16 43.82 4.46
383 389 1.376037 GAGTTGTGAAGGAGGCGGG 60.376 63.158 0.00 0.00 0.00 6.13
387 393 1.192146 TCGGGGAGTTGTGAAGGAGG 61.192 60.000 0.00 0.00 0.00 4.30
395 401 3.246880 GGTGGGTCGGGGAGTTGT 61.247 66.667 0.00 0.00 0.00 3.32
429 435 0.324738 ATCAGGAGAAGCTCGTGGGA 60.325 55.000 14.75 0.56 43.75 4.37
437 443 1.144936 CCACGGGATCAGGAGAAGC 59.855 63.158 0.00 0.00 0.00 3.86
454 460 1.996187 GGAGGAGGTGGGGAAGACC 60.996 68.421 0.00 0.00 39.11 3.85
459 465 3.364964 ATCGGGAGGAGGTGGGGA 61.365 66.667 0.00 0.00 0.00 4.81
621 629 2.818132 CAGGGACGGAGATGAGCC 59.182 66.667 0.00 0.00 0.00 4.70
622 630 2.107953 GCAGGGACGGAGATGAGC 59.892 66.667 0.00 0.00 0.00 4.26
632 640 1.002011 GGTGAAAGGAGGCAGGGAC 60.002 63.158 0.00 0.00 0.00 4.46
636 644 2.747855 GGCGGTGAAAGGAGGCAG 60.748 66.667 0.00 0.00 0.00 4.85
648 656 2.047560 GAACCTTAGTGCGGCGGT 60.048 61.111 9.78 0.00 0.00 5.68
685 693 2.752238 AGAGGAGAGGTGGCGACG 60.752 66.667 0.00 0.00 0.00 5.12
695 703 2.249125 TGCTGGGAGGGAGAGGAGA 61.249 63.158 0.00 0.00 0.00 3.71
701 709 2.997315 TGACGTGCTGGGAGGGAG 60.997 66.667 0.00 0.00 0.00 4.30
729 737 3.412408 GGAAGGGGGAGGAGGTGC 61.412 72.222 0.00 0.00 0.00 5.01
760 768 3.850098 AAGTGGAAGGGTGCGGCTG 62.850 63.158 0.00 0.00 0.00 4.85
761 769 3.553095 GAAGTGGAAGGGTGCGGCT 62.553 63.158 0.00 0.00 0.00 5.52
762 770 3.056328 GAAGTGGAAGGGTGCGGC 61.056 66.667 0.00 0.00 0.00 6.53
763 771 2.359975 GGAAGTGGAAGGGTGCGG 60.360 66.667 0.00 0.00 0.00 5.69
764 772 2.359975 GGGAAGTGGAAGGGTGCG 60.360 66.667 0.00 0.00 0.00 5.34
765 773 1.152830 TTGGGAAGTGGAAGGGTGC 59.847 57.895 0.00 0.00 0.00 5.01
766 774 0.184933 TGTTGGGAAGTGGAAGGGTG 59.815 55.000 0.00 0.00 0.00 4.61
767 775 1.075536 GATGTTGGGAAGTGGAAGGGT 59.924 52.381 0.00 0.00 0.00 4.34
768 776 1.616994 GGATGTTGGGAAGTGGAAGGG 60.617 57.143 0.00 0.00 0.00 3.95
769 777 1.355720 AGGATGTTGGGAAGTGGAAGG 59.644 52.381 0.00 0.00 0.00 3.46
770 778 2.619074 GGAGGATGTTGGGAAGTGGAAG 60.619 54.545 0.00 0.00 0.00 3.46
771 779 1.354368 GGAGGATGTTGGGAAGTGGAA 59.646 52.381 0.00 0.00 0.00 3.53
772 780 0.991920 GGAGGATGTTGGGAAGTGGA 59.008 55.000 0.00 0.00 0.00 4.02
773 781 0.392998 CGGAGGATGTTGGGAAGTGG 60.393 60.000 0.00 0.00 0.00 4.00
774 782 3.159298 CGGAGGATGTTGGGAAGTG 57.841 57.895 0.00 0.00 0.00 3.16
816 824 3.846430 GTAGGAGGCGGGGTTCGG 61.846 72.222 0.00 0.00 39.69 4.30
817 825 4.203076 CGTAGGAGGCGGGGTTCG 62.203 72.222 0.00 0.00 42.76 3.95
818 826 4.525949 GCGTAGGAGGCGGGGTTC 62.526 72.222 0.00 0.00 0.00 3.62
881 889 4.256090 GAACGGATGCATGGCGGC 62.256 66.667 2.46 0.00 0.00 6.53
882 890 3.585990 GGAACGGATGCATGGCGG 61.586 66.667 2.46 0.00 0.00 6.13
883 891 2.514592 AGGAACGGATGCATGGCG 60.515 61.111 2.46 0.00 0.00 5.69
884 892 2.189499 GGAGGAACGGATGCATGGC 61.189 63.158 2.46 0.00 0.00 4.40
885 893 0.533755 GAGGAGGAACGGATGCATGG 60.534 60.000 2.46 0.00 0.00 3.66
886 894 0.533755 GGAGGAGGAACGGATGCATG 60.534 60.000 2.46 0.00 0.00 4.06
887 895 1.832912 GGAGGAGGAACGGATGCAT 59.167 57.895 0.00 0.00 0.00 3.96
888 896 2.721167 CGGAGGAGGAACGGATGCA 61.721 63.158 0.00 0.00 0.00 3.96
889 897 2.107141 CGGAGGAGGAACGGATGC 59.893 66.667 0.00 0.00 0.00 3.91
890 898 0.460284 CAACGGAGGAGGAACGGATG 60.460 60.000 0.00 0.00 0.00 3.51
891 899 1.614241 CCAACGGAGGAGGAACGGAT 61.614 60.000 0.00 0.00 0.00 4.18
892 900 2.280552 CCAACGGAGGAGGAACGGA 61.281 63.158 0.00 0.00 0.00 4.69
893 901 1.614241 ATCCAACGGAGGAGGAACGG 61.614 60.000 4.41 0.00 41.90 4.44
894 902 1.108776 TATCCAACGGAGGAGGAACG 58.891 55.000 4.41 0.00 41.90 3.95
895 903 2.434702 ACATATCCAACGGAGGAGGAAC 59.565 50.000 4.41 0.00 41.90 3.62
896 904 2.434336 CACATATCCAACGGAGGAGGAA 59.566 50.000 4.41 0.00 41.90 3.36
897 905 2.039418 CACATATCCAACGGAGGAGGA 58.961 52.381 4.41 0.00 41.90 3.71
898 906 1.762957 ACACATATCCAACGGAGGAGG 59.237 52.381 4.41 0.00 41.90 4.30
899 907 3.198068 CAACACATATCCAACGGAGGAG 58.802 50.000 4.41 0.00 41.90 3.69
900 908 2.679639 GCAACACATATCCAACGGAGGA 60.680 50.000 0.31 0.31 43.01 3.71
901 909 1.670811 GCAACACATATCCAACGGAGG 59.329 52.381 0.00 0.00 34.05 4.30
902 910 1.670811 GGCAACACATATCCAACGGAG 59.329 52.381 0.00 0.00 34.05 4.63
903 911 1.745232 GGCAACACATATCCAACGGA 58.255 50.000 0.00 0.00 35.55 4.69
904 912 0.376852 CGGCAACACATATCCAACGG 59.623 55.000 0.00 0.00 0.00 4.44
905 913 0.248054 GCGGCAACACATATCCAACG 60.248 55.000 0.00 0.00 0.00 4.10
906 914 0.100503 GGCGGCAACACATATCCAAC 59.899 55.000 3.07 0.00 0.00 3.77
907 915 0.034574 AGGCGGCAACACATATCCAA 60.035 50.000 13.08 0.00 0.00 3.53
908 916 0.034574 AAGGCGGCAACACATATCCA 60.035 50.000 13.08 0.00 0.00 3.41
909 917 1.102978 AAAGGCGGCAACACATATCC 58.897 50.000 13.08 0.00 0.00 2.59
910 918 2.479560 GGAAAAGGCGGCAACACATATC 60.480 50.000 13.08 0.00 0.00 1.63
911 919 1.476488 GGAAAAGGCGGCAACACATAT 59.524 47.619 13.08 0.00 0.00 1.78
912 920 0.885196 GGAAAAGGCGGCAACACATA 59.115 50.000 13.08 0.00 0.00 2.29
913 921 1.665442 GGAAAAGGCGGCAACACAT 59.335 52.632 13.08 0.00 0.00 3.21
914 922 2.494530 GGGAAAAGGCGGCAACACA 61.495 57.895 13.08 0.00 0.00 3.72
915 923 2.200337 AGGGAAAAGGCGGCAACAC 61.200 57.895 13.08 0.00 0.00 3.32
916 924 2.197324 AGGGAAAAGGCGGCAACA 59.803 55.556 13.08 0.00 0.00 3.33
917 925 1.460273 TTCAGGGAAAAGGCGGCAAC 61.460 55.000 13.08 0.00 0.00 4.17
918 926 0.541764 ATTCAGGGAAAAGGCGGCAA 60.542 50.000 13.08 0.00 0.00 4.52
919 927 0.965363 GATTCAGGGAAAAGGCGGCA 60.965 55.000 13.08 0.00 0.00 5.69
920 928 1.667154 GGATTCAGGGAAAAGGCGGC 61.667 60.000 0.00 0.00 0.00 6.53
921 929 0.034089 AGGATTCAGGGAAAAGGCGG 60.034 55.000 0.00 0.00 0.00 6.13
922 930 1.474077 CAAGGATTCAGGGAAAAGGCG 59.526 52.381 0.00 0.00 0.00 5.52
923 931 2.807676 TCAAGGATTCAGGGAAAAGGC 58.192 47.619 0.00 0.00 0.00 4.35
924 932 3.131755 GCATCAAGGATTCAGGGAAAAGG 59.868 47.826 0.00 0.00 0.00 3.11
925 933 3.131755 GGCATCAAGGATTCAGGGAAAAG 59.868 47.826 0.00 0.00 0.00 2.27
926 934 3.099141 GGCATCAAGGATTCAGGGAAAA 58.901 45.455 0.00 0.00 0.00 2.29
927 935 2.042842 TGGCATCAAGGATTCAGGGAAA 59.957 45.455 0.00 0.00 0.00 3.13
928 936 1.640149 TGGCATCAAGGATTCAGGGAA 59.360 47.619 0.00 0.00 0.00 3.97
929 937 1.064463 GTGGCATCAAGGATTCAGGGA 60.064 52.381 0.00 0.00 0.00 4.20
930 938 1.396653 GTGGCATCAAGGATTCAGGG 58.603 55.000 0.00 0.00 0.00 4.45
931 939 1.341285 TGGTGGCATCAAGGATTCAGG 60.341 52.381 0.00 0.00 0.00 3.86
932 940 2.133281 TGGTGGCATCAAGGATTCAG 57.867 50.000 0.00 0.00 0.00 3.02
933 941 2.601240 TTGGTGGCATCAAGGATTCA 57.399 45.000 9.58 0.00 0.00 2.57
934 942 2.033801 CGATTGGTGGCATCAAGGATTC 59.966 50.000 19.22 10.23 0.00 2.52
935 943 2.026641 CGATTGGTGGCATCAAGGATT 58.973 47.619 19.22 1.22 0.00 3.01
936 944 1.212688 TCGATTGGTGGCATCAAGGAT 59.787 47.619 19.22 1.63 0.00 3.24
937 945 0.617935 TCGATTGGTGGCATCAAGGA 59.382 50.000 19.22 15.01 0.00 3.36
938 946 0.734889 GTCGATTGGTGGCATCAAGG 59.265 55.000 19.22 12.95 0.00 3.61
939 947 0.374758 CGTCGATTGGTGGCATCAAG 59.625 55.000 19.22 6.37 0.00 3.02
940 948 0.321210 ACGTCGATTGGTGGCATCAA 60.321 50.000 16.67 16.67 0.00 2.57
941 949 1.018752 CACGTCGATTGGTGGCATCA 61.019 55.000 0.00 0.00 0.00 3.07
942 950 1.019278 ACACGTCGATTGGTGGCATC 61.019 55.000 15.57 0.00 38.46 3.91
943 951 0.605319 AACACGTCGATTGGTGGCAT 60.605 50.000 15.57 2.87 38.46 4.40
944 952 1.227704 AACACGTCGATTGGTGGCA 60.228 52.632 15.57 0.00 38.46 4.92
945 953 1.206578 CAACACGTCGATTGGTGGC 59.793 57.895 15.57 0.00 38.46 5.01
946 954 0.511221 GTCAACACGTCGATTGGTGG 59.489 55.000 13.39 0.00 38.46 4.61
947 955 1.213491 TGTCAACACGTCGATTGGTG 58.787 50.000 8.39 8.39 39.98 4.17
948 956 1.595794 GTTGTCAACACGTCGATTGGT 59.404 47.619 10.93 0.00 0.00 3.67
949 957 1.070175 GGTTGTCAACACGTCGATTGG 60.070 52.381 17.29 0.00 0.00 3.16
950 958 1.595328 TGGTTGTCAACACGTCGATTG 59.405 47.619 17.29 3.39 0.00 2.67
951 959 1.595794 GTGGTTGTCAACACGTCGATT 59.404 47.619 17.29 0.00 0.00 3.34
952 960 1.214367 GTGGTTGTCAACACGTCGAT 58.786 50.000 17.29 0.00 0.00 3.59
953 961 2.668203 GTGGTTGTCAACACGTCGA 58.332 52.632 17.29 0.00 0.00 4.20
958 966 2.351888 GCGCGTGGTTGTCAACAC 60.352 61.111 17.29 11.80 0.00 3.32
959 967 3.578272 GGCGCGTGGTTGTCAACA 61.578 61.111 17.29 1.31 0.00 3.33
960 968 3.521308 CTGGCGCGTGGTTGTCAAC 62.521 63.158 8.43 7.20 0.00 3.18
961 969 3.276091 CTGGCGCGTGGTTGTCAA 61.276 61.111 8.43 0.00 0.00 3.18
963 971 4.980805 TCCTGGCGCGTGGTTGTC 62.981 66.667 8.43 0.00 0.00 3.18
964 972 4.988598 CTCCTGGCGCGTGGTTGT 62.989 66.667 8.43 0.00 0.00 3.32
965 973 4.680237 TCTCCTGGCGCGTGGTTG 62.680 66.667 8.43 10.52 0.00 3.77
966 974 3.936203 TTCTCCTGGCGCGTGGTT 61.936 61.111 8.43 0.00 0.00 3.67
1020 1028 1.956170 CACGAACGGAAGCTGCTGT 60.956 57.895 0.00 0.00 0.00 4.40
1163 1171 0.038526 GCGGAACTCCTTGACGAAGA 60.039 55.000 0.00 0.00 0.00 2.87
1266 1274 0.465705 GGATGTGGATGGCGAAGAGA 59.534 55.000 0.00 0.00 0.00 3.10
1429 1457 1.543429 CGGTGAGGACCTTTTTCAGCT 60.543 52.381 0.00 0.00 40.58 4.24
1435 1463 0.108019 GACACCGGTGAGGACCTTTT 59.892 55.000 40.21 15.28 45.00 2.27
1436 1464 0.763223 AGACACCGGTGAGGACCTTT 60.763 55.000 40.21 16.10 45.00 3.11
1437 1465 0.763223 AAGACACCGGTGAGGACCTT 60.763 55.000 40.21 26.50 45.00 3.50
1494 1522 0.529119 GTGACGAACGGTCCAACAGT 60.529 55.000 0.00 0.00 45.46 3.55
1855 1929 4.246458 CTCGCTAAAGAAAGCTAACAGGT 58.754 43.478 0.00 0.00 40.49 4.00
1875 1949 6.035112 CAGGTTTCTTAGCGATTGTAGAACTC 59.965 42.308 0.00 0.00 0.00 3.01
1887 1961 5.175859 TGAAGGTATTCAGGTTTCTTAGCG 58.824 41.667 0.00 0.00 40.54 4.26
1944 2019 4.614967 ACATCAAGGATCCAGGGAAAAT 57.385 40.909 15.82 0.00 0.00 1.82
1992 2067 3.918591 GCAGCAACATCATCAGTTTTCAG 59.081 43.478 0.00 0.00 0.00 3.02
2230 2309 5.816449 AGGAAGCCAAAACAACATTTTTG 57.184 34.783 2.04 2.04 43.34 2.44
2231 2310 7.109501 AGTAAGGAAGCCAAAACAACATTTTT 58.890 30.769 0.00 0.00 0.00 1.94
2232 2311 6.649155 AGTAAGGAAGCCAAAACAACATTTT 58.351 32.000 0.00 0.00 0.00 1.82
2245 2329 1.940613 CATTGCCGTAGTAAGGAAGCC 59.059 52.381 6.28 0.00 0.00 4.35
2246 2330 2.351726 CACATTGCCGTAGTAAGGAAGC 59.648 50.000 6.28 0.00 0.00 3.86
2635 2722 1.291184 CCGCACATCGAGAAGCAACA 61.291 55.000 6.57 0.00 41.67 3.33
2637 2724 1.005037 ACCGCACATCGAGAAGCAA 60.005 52.632 6.57 0.00 41.67 3.91
2655 2742 6.182627 AGCAATCAAGTTCAATGGTATGAGA 58.817 36.000 0.00 0.00 0.00 3.27
2690 2777 5.576447 TGCAAACAGAGATCGTAGTATCA 57.424 39.130 0.00 0.00 0.00 2.15
2832 2926 7.548196 AGTGATACACGAACTTCTTTTGAAA 57.452 32.000 0.00 0.00 39.64 2.69
2834 2928 6.202188 GGAAGTGATACACGAACTTCTTTTGA 59.798 38.462 12.89 0.00 45.86 2.69
2862 2956 8.337739 TCTCTAGGGAGTAATACAAGAACTCTT 58.662 37.037 0.00 0.00 39.65 2.85
2889 2983 7.629222 GCACAAACTGGATAGCAATACTTGAAT 60.629 37.037 0.00 0.00 0.00 2.57
3001 3105 6.978343 TCGCAACAAATAGTAGCAATTACT 57.022 33.333 0.00 0.00 44.71 2.24
3250 3394 9.473640 AATTTAAAAACGGCGTAAATCCTTTTA 57.526 25.926 15.20 16.12 29.37 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.