>input_sequence_50689
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-----------------------------------------------ATGGCGGAGGAGGAGGGGACACAGCAGCTTCCG
TTCGTGCGGGAGACGGTCCTCAAGAAGAGGAAGGACAACGAGGAGTGGGCCACCAAGAACCGGGAGCGCAAGGCGGCCAA
GATGCAGCACCGCCGCCACGACGCCAAGTGCGCCATCAAGCACCCCGAGGTCTTCGTCAAGGAGTTCCGCAACAAGGAGC
TCGACTTCCTGCGGATGCGGACGCGCCTCAAGGTCCGGAATCTGCGCCCCGCCGAGGCCATCGACGCCAAGCTTCTCTTC
GCCATCCACATCCCAGGG------GCAGTGCC-----TACCTAAACCTAAAGCATCC------ATCTCTCTGACTTGCTG
GTGGTACCTCGCGATTAACATCAAACTC---TTCATGTCTGATTGCAGCACTGCTGACTTGCACCCGCAAAATCGGGAAG
ATCTTGGCAAGGCTGCAGCTGAAAAAGGTCCTCACCGGTGTCTTCCTCAAGGCCACCGAGGCAAACCTCAAGAGGCTTGC
TACTGTTGGACCGTTCGTCACCTATGGGTAACTGACTGAATGGAAATATCTTCTCCATTGGTGTGGCTTGTTTCGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGTGTCACAGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGCGGATATTTCGACAAGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACATCTTCTGGAGAATGAGGTTCAGG
CATTCGATTTAAGTAAAGCTTTGGCATGACTA-CGGCAGCCTAGTAATTGGCATAGGAAGTAATCAGCTAGGCGTGTCAG
TGATCTGTACCTGTTAGCTTTCTTTAGCGAGTTCTACAATCGCTAAGAAACCTGAATACCTTCAGGGTTCAATTC-TGGA
CCAATAATATGTTGTCGCATTTTCCCTGGATCCTTGATGTTGCCAGGCATTTAACTATTTTGGCGTCTGAAAACTGATGA
TGTTGCTGCAGCGCTAGTACAACACCTTTCTTTTCATTTTTTTCCTTGATTTTGTGTCTCCCCACTCCGCACAATGTTCC
TCTTTCTCTAT--CAGATTGAAC-AAAAATGCATGTGTGCGCATACTCGAACTTCAGAGAACCTGAACTCTCTCTTAATC
GTTGTGGATGTTTTTTTGTGCAGAGGCAGGAGGAAG-AAAAGACAGCAATCAACACACACGTTCTGAACAAAAA-----T
GTTGTTTTGGCTTCCTTACTACGGCAATGTGAGAGACTT-ATAAAAATGAGGAAGTTCAACCTTATCTTTGTGAAGGTTC
AGTGAGTGTACCAGTAGCAGGAATTCGCAGACTGCAAAAAA--GAAAATCTTTCAAAAAAAACAACACACCTTGGGTGGG
GGTCTGTTTGCTGCTGGAGCTCATATTTGTGTTTTTCGTGCAGTGTTTTCAGGTGCATCGGAAGGTGTTATGA-------
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>chr1D_1_TraesCS1D01G134300
CATGATCATATAGCTGACATAGTAGTTGTGGCACATCCATCGTTTATCCATTTTCATACATATTACGCTAGATCATTGCA
CATCCTGGTACATTGTCAGAGGCATTCATATAGAGTCATATTTTATCATAGGTATCGAGTTGTAATTTTTATTTCTTTTG
AGTTATAAGTAAATAGAAGTGTGATGATCATTATTCATTTTTAAAGCGGTGTTCCAGTGAGAAAAAGATGATGAAGACTA
CGATTCCCTCACAAGTCAGGATGATGCTTCGGACAATAAGAAAATATATATAGTAGCACCAGGATCAGAATAGTTATTAC
GATGACGATCGA-CCCTATATAGGCCCGATTAGGTGTTCCCGAACTAAAAAACA----ACCCGACCCACCCGCCTCCTTC
ACAACTCCCCGACCCACCCGCTGCCCAGCTCCTATCCCACGAGCTTCTCCTGATCCCGTGGTCTT--CCCCACCTCCTCC
CGATCCCGCCGCCACCCCCGCCTCCTCCGGCGCGCCGCCGTCCCCGCCTCCGCCCACACCTCCCTCCGGCGCGCCGCCGT
CCCCGCCTCCTCCAGGCTCGCCTCCGCCCACGCCTCCCTCCGGCGCGCCGCCGTCCCCGCCTCCTCCCGGCTCATCTCCG
TCCCTGCCTCCTTTCACCGCCGCACTAAGGTTCCCCGGCCCCCTCCACCCGCCGTCGCCACCTCTCCTCTCCCTCCCAGC
ACGTCACCGCCGGCCCGCACCTCCTCCCCCTTCCAGCGGACCACCGGCAGCCGCACCCTTCCACTTCCCAACATCCTCCG
GCGATGCGCCGGCCCTTCCCGTCCCGAACCCCGCCTCCTACGCTGCGCCGCCACGCAACCGCAGCCCGAGCCCCGCCTCC
GCCACCGCGCCGCCATGCATCCGTTCCTCCTCCGTTGGATATGTGTTGCCGCCTTTTCCCTGAATCCTTGATGCCACCAA
TCGACGTGTTGACAACCACGCGCCAGGAGAACCCAGCGCCGCCGGCCATGGCGGAGGAGGAGGGGACACAGCAGCTTCCG
TTCGTGCGGGAGACGGTCCTCAAGAAGAGGAAGGACAACGAGGAGTGGGCCACCAAGAACCGGGAGCGCAAGGCGGCCAA
GATGCAGCACCGCCGCCACGACGCCAAGTGCGCCATCAAGCACCCCGAGGTCTTCGTCAAGGAGTTCCGCAACAAGGAGC
TCGACTTCCTGCGGATGCGGACGCGCCTCAAGGTCCGGAATCTGCGCCCCGCCGAGGCCATCGACGCCAAGCTTCTCTTC
GCCATCCACATCCCAGGG------GCAGTGCC-----TACCTAAACCTAAAGCATCC------ATCTCTCTGACTTGCTG
GTGGTACCTCGCGATTAACATCAAACTC---TTCATGTCTGATTGCAGCACTGCTGACTTGCACCCGCAAAATCGGGAAG
ATCTTGGCAAGGCTGCAGCTGAAAAAGGTCCTCACCGGTGTCTTCCTCAAGGCCACCGAGGCAAACCTCAAGAGGCTTGC
TACTGTTGGACCGTTCGTCACCTATGGGTAACTGACTGAATGGAAATATCTTCTCCATTGGTGTGGCTTGTTTCGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGTGTCACAGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGCGGATATTTCGACAAGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACATCTTCTGGAGAATGAGGTTCAGG
CATTCGATTTAAGTAAAGCTTTGGCATGACTA-CGGCAGCCTAGTAATTGGCATAGGAAGTAATCAGCTAGGCGTGTCAG
TGATCTGTACCTGTTAGCTTTCTTTAGCGAGTTCTACAATCGCTAAGAAACCTGAATACCTTCAGGGTTCAATTC-TGGA
CCAATAATATGTTGTCGCATTTTCCCTGGATCCTTGATGTTGCCAGGCATTTAACTATTTTGGCGTCTGAAAACTGATGA
TGTTGCTGCAGCGCTAGTACAACACCTTTCTTTTCATTTTTTTCCTTGATTTTGTGTCTCCCCACTCCGCACAATGTTCC
TCTTTCTCTAT--CAGATTGAAC-AAAAATGCATGTGTGCGCATACTCGAACTTCAGAGAACCTGAACTCTCTCTTAATC
GTTGTGGATGTTTTTTTGTGCAGAGGCAGGAGGAAG-AAAAGACAGCAATCAACACACACGTTCTGAACAAAAA-----T
GTTGTTTTGGCTTCCTTACTACGGCAATGTGAGAGACTT-ATAAAAATGAGGAAGTTCAACCTTATCTTTGTGAAGGTTC
AGTGAGTGTACCAGTAGCAGGAATTCGCAGACTGCAAAAAA--GAAAATCTTTCAAAAAAAACAACACACCTTGGGTGGG
GGTCTGTTTGCTGCTGGAGCTCATATTTGTGTTTTTCGTGCAGTGTTTTCAGGTGCATCGGAAGGTGTTATGACAATCTC
CGCTGTTTCTACACCGGACGCCGGTCCGCCACATCTCAACTAGCATCTACTACTACATGTTGTACTAGGCATGCTCTATT
TCTTAAGCTCAAAAGTTTGATTTTGCCATGCTTTCCGTTTCAGGGCAAATGTGTTGTGCTGGGCAGCAAGGATTTGGGAT
CTGTTGCTTCTCGATGTGCGGTCTCATACCATTGAACTTGATTGCTCAGGCCTCTATGATACTACGATCTCTGTTTGCAA
TTTGCTTCTTGTAA-TACTACTGCGGATTCAGATTGGGTTGTATTATTTCCAATTGTATTCTTCTGAGCTTGTGTTTTAA
------TTGAAAAAAATGTGCGTGTGAGCAAGAGAAAAAGAATATTTTCAAAAGAAGTTCGTGTATCACTTCCCTAAGAG
TTCTTGTATTACTCCCTAGAGAATTCAAGTATTGCTATCCAGTTTGTGCACACATAATTCTCTTTCCTGTATGTGT--AT
GTTTT-CGAAACTACAATGATCAAAAAAAAACTA------GATGTAACCAATCT-AAAAAGTTTAGTAATTGCTACTATT
TG-----------------------TTGCGATGTCTAAAAGAGAATTGAGTTTTCGTTGAAATTCAAATAAATAAATATG
AGTGGTTATATGTTAAAATAAATAATTGAAAAAGCCCCAAGGAGTCCAAATTTTAGAAAAGTAGCAGTTCGATG------
----TTTGTATAAAATTTAGACTGTTCTCATTATGAAAGAGTGAATAC-AAGAAGTTA------AAAAAAACAAGAAATT
TGTATTTTAAAAATAGAGGAGTTCAAAAATCTTTAAAAGGATTTACGCCG--TTTTTAAATTAAAAAACTCTAGAAGTAC
TAATTTAAATAACGGTCTGGTTCAATAATTATTACAAAACTAGGATTTTTT--GTTAATAAAAGAAATAAACCAAGAAGT
CCAAATTATGAAAATATAGAAGTTCGATATTTATAAAAATATCATATTTT-CCTTGTTA-TAAAGAATAAAAATGGAGAA
GTTTAAATTAAAATAA
>chr7B_299
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----------------------------------------------------------CCAAGATTAGAATAATTATTTG
GATCACCATC-A-CCCTATATAGGCCCGATTAGGTGTTCCTGAACTAAAAAAAAAAGGACCCGACCCAACCGGCTCCTTC
GCAACC-CCCGACCCACCCGCTGCCCACCTCCTACCCCACGACCTTCTCCTGATCCCGTCGTCTC--CCCCACCTTCTCC
CGATCCCGCCGCCA--------------------------TCCCCGCCTCCGCCCACACCTTCCTCCGCTGCGCCGCCAT
TCCCGCCTTCTCCAGGCTCGCCTCTGCCCACGCCTCCCTCTAACGCGCCGCCGTCCCCGCCTCCTCCCATCTCATCTCCA
TCCTTGCCTCCTTTCGCCGCCGCACTAAGGTTCCCCAGGCCCCTCCACCCGCTGTCGCCACCCCTCCTTTCCCTCCCAGC
GCGCTGCCGCCGGCCCTCACCTCCTCCCCCTTCCAGCAGACCATCG----------------------------------
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---------------------------------------------------------------------------GCAGC
CCGCACCCTTCCCCTTCCCAGCATCCTCCGATGAT---------------------------------------------
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---------------G--CGCCGGCCCTCCCCATCCCGAACCCCGCCTCCTACGCTGCGCCGCCACTCAACCACACC---
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----------------------------------------------------------TCGAGCCCCACCTCCGCCACCG
CGCCACCAT-----------------------------------------------------------------------
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>chr4B_299
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----------------------------------------------------------CCAGGATCAGAATAGTTATTAT
GATCACGATC-AGCCCTATATAGGCCCGATTAGGTGTTCCCGAACTAAAAAAACAA------------------------
-------CCCGACCCACCCGCTGCCCACCTCCTACCCCACGACCCTCTCCTGATCCCATCGTCTC--CCCCACCTTCTCC
CGATCCCACCGCCG-CCCCGCCTCCTCCGGCGCGCCGCCGTTCCCGCCTCCGACCACACCTTCCTCTG------------
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-------------------------------------------GCGCGCCGCCGTTCCCACCTCCTCCAGGCTCGCCTCC
GCCCACGCCTCCCTCCGGCGCGCCGCCGTCCC-----CGCCTCCTCCTGGCTCATCT------CCGTCTCTGCCTCC---
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----------------------------------------------------------------------TTTTGCCGCC
GCACTA--------------------------------------------------AGGTTCCCTGGCCCCCTCCACCCG
CCGTCGCCACCTCTCCTCTCCCTCCCAGCGCGCCGCCGCCGGCCCGCACCTCCTCCCCCTTCCAGCGGACCACCGGCAGC
CCGCACCCTTCCCCTTCCTAGCATCCTCCGGCGAT---------------------------------------------
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---------------G--CGCCGGCCCTCCCCGTCCCGAACACCGCCTCCTACGCT------------------------
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>chr3B_301
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------------------------------------------------------------AGGATCAGAATAGTTATTAT
GATCACGATC-AGCCCTATATAGGCCCGATTAGGTGTTCCCGAACTAAAAAAACAA------------------------
-------CCCGACCCACCCGCTGCCCACTTCCTACCCCACGACCCTCTCCTGATCCCATCGTCTCTCCCCCACCTTTTCC
CGATCCCGCCGCCGCCCCCGCCTCCTCCGGCGCGCCGCCGTTCCCGCCTCCGCCCACACCTTCCTCTG------------
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-------------------------------------------GCGCGCCGCCGTTCCCGCCTCCTCCAGGCTCGCCTCC
GCCCACGCCTCCCTCCGGCGCGCCGCCGTCCC-----CGCCTCCTCCCGGCTCATCT------CCGTCTCTGCCTCC---
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----------------------------------------------------------------------TTTTGCCGCC
GCATTA--------------------------------------------------AGGTTCCCCGGCCCCCTCCACCCG
CCGTCGCCACCTCTCCTCTCCCTCCCAGCGCGCCGCCGCCGGCCCGCACCTCCTCCCCCTTCCAGCGGACCACCGGCAGC
CCGCACCCTTCCCCTTCCCAGCATCCTCCGGCGAT---------------------------------------------
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---------------G--CGCCGGCCCTCCCCGTCCCGAACCCCACCTTCTACGCT------------------------
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>chr7D_968
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--------------ACCACGCGCCAGGAGAACCCCGCGCCGCCGGCCATGGCGGAGGAGGAGGGCACGCAGCAGCTGCCG
TTCGTGCGGGAGACGGTCCTCAAGAAGAGGAAGGACAACGAGGAGTGGGCCACCAAGAACCGGGAGCGCAAGGCGGCCAA
GAGGCAGCGCCGCTGCCACGACGCCAAGGGCGCCATCAAGCGCCCCGAGGACTTCGTCAAGGAGTTCCGCAACAAGGAGC
TCGACTTCCTGCGGATGCGCACGCGCCTCAAGGTCCGGAACCTGCGCCCCGCCGAGGCCATCGACGCCAAGCTGCTCTTC
GCCGTCCGCATCCCAGGG------TCCGTGCC-----TGCCTA--CCTAAACCTAAAGCATGCACTTGTCTGACTTGCTG
ATGGCACCTCGCGGTTATTAACATCGAG-TTTTCGCGTGTGATTGCAGCACCGCCGACTTGCACCCGCAAA-TCAGGAAG
ATCTTGGCCAGGCTGCGGCTCACGCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACCGAGGCAAACCTCAAGAGGCTTGC
AGCTGTCGGACCGTTCGTCACCTATGGGTAACTGAATGAAGATATC-----TTCTCCATTGTGTGGCTTGTTTTGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGTGTCACGGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGCGGTTATTTCGACAAGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACATCTTCTGGAGATTGAGGTTCAGG
CTTTCGATTCAAGTAAAGCTTTGGCATGCCTA-CGGCAACCTAGTAATAGGCATAGGAAATAATCAGGAAGCCATGTCAG
TGATCTGTGCCTGTTAGCTTTATTTAGCCAGTTCCATAATTGCTAAGAAACTTGAATATCTTCAGAGTTCAAATTCTGGA
CCAATAATAATGT-------------------------------------------------------------------
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>chr7A_968
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--------------ACCACGCGCCAGGAGAGCCCCGCGCCGCCGGCCATGGCGGAGGAGGAGGGGACGCAGCAGCTGCCG
TTCGTGCGGGAGACGGTCCTCAAGAAGAGGAAGGACAACGAGGAGTGGGCCACCAAGAACCGGGAGCGCAAGGCGGCCAA
GAGGCAGCGCCGCCGCCACGACGCCAAGGGCGCCATCAAGCGCCCCGAGGACTTCGTCAAGGAGTTCCGCAACAAGGAGC
TCGACTTCCTGCGGATGCGCATGCGCCTCAAGGTCCGGAAGCTGCGCCCCGCCGAGGCCATCGACGCCAAGCTGCTCTTC
GCCATCCGCATCCCAGGG------TCAGTGCC-----TACCTA--CCTGAAGCATCC------ACCTCTCTGGCTTGCTG
ATGGTACCTCGCGATTATTAACATCGGATTTTTTGCGTGTGATTGCAGCACTGCGGACTTGCACCCGCAAA-TCAGGAAG
ATCTTGGCCAGGCTGCGGCTGACCCAGGTCCTCACCGGCGTGTTCCTCAAGGCCACCGAGGCAAACCTCAAGAGGCTTGC
TGCTGTTGGACCGTTCGTCACCTATGGGTAATA-ACTGAATGGAAATATTTTTCTCCATTGTGTGGCTTGTTTTGCCAGT
TCTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGTGTCACGGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGCGGATATTTCGACAAGGAGCCTTTC-----------------------------
----------CCCCTGACCAGCAATGATCTAATCGAAAAGGTATAATTTCTATGACATAGTCTGAAGATTGAGGTTCAGG
CATTCGATTCAAGTAAAGCTTTGACATGCCTGCCGGCAACCTAATAATAAGCATAGGAAGTACTCAGCAAGGCATACCAG
TGATCTGTGCCTGTTAATTTTATCTAGCCAGTTCCACAATTGCTAACAAATTTGAATACCTTCAGGGTTCAATTC-TGGA
CCAATAA-------------------------------------------------------------------------
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>chr7B_968
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--------------ACCACGCGCCAGGAGAACCCCGCGCCGCCGGCCATGGCGGAGGAGGAGGGCACGCAGCAGCTGCCG
TTCGTGCGGGAGACGGTCCTCAAGAAGAGGAAGGACAACGAGGAGTGGGCCACCAAGAACCGGGAGCGCAAGGCGGCCAA
GAGGCAGCGCCGCCGCCACGACGCCAAGGGCGCCATCAAGCGTCCCGAGGACTTCGTCAGGGAGTTCCGCAACAAGGAGC
TCGACTTCCTGCGGATGCGGACGCGCCTCAAGGTCCGGAACCTGCGCCCCGCCGAGGCCATCGACGCCAAGCTGCTCTTC
GCCATCCGCATCCCAGGG------TCAGTCACCTATATACCTA--CCTGAAGCACGC------ACTTGTCTGACTTGCTG
ATGGTACCTCGCGATTATTAACACGGA--TTTTCGCGTGTGATTGCAGCACCGCTGACTTGCACCCGCAAA-TCAGGAAG
ATCTTGGCCAGGCTGCGGCTCACCCAGGTCCTCACCGGCGTCTTCCTCAAGGCCACCGAGACAAACCTCAAGAGGCTTGC
TGCTGTCGGACCGTTTGTCACCTATGGGTAATA-ACTGAATGGAAATATCTTCTCCATTG-TGTGGCTTGTTTCGTCAGT
TCC-------TAGTTTAAGGTGAATTGAATTGAATGTTGTTAATTGGTGTCACGGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTAATTTACAAGAAGGGTCGCGGATATTTCGACAAGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTTTGTGACATCTTCTGGAGATTTAGGTTCAGG
CATTCGATTCAAGTAAAGCTTTGACATGCCTACCGGCAACTTAATAATAAGCATAGGAAGTACTCAGCAAGGCAAACCAG
TGATCTGTGCCTGTTAATTTTATCTAGCCAGTTCCACAATTGCTAACAAACTTGAATACCTTCAGGGTTCAATTC-TGGA
CCAATAATAATGT-------------------------------------------------------------------
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>chr3A_1249
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-------------------------------------------------------GGCCATCGACGCCAAGCTACTCTTC
GCCATCCGCATCCCAGGG------GCAGTGCC-----TACCTAAACCAAAAGCATCC------ATCTCTCTAACTTGCTG
GTGGTACCTCGCGATTAACATCGAACTC---TTCCTGTCTGATTGCAGCACCGCTGACTTGCAGCAGCAAAATCGTGAAG
ATCTTGGCAAGGCTGCGGCTGACCCAGGTCCTCACCGGTGTCTTCCTCAAGGCCACCGAAGCAAACCTCAAGAGGCTTGC
TGCTGTTGGACCGTTCG-CACCTATGGGTAACTGACTGAATGAAAATATCTTCTCCATTGGTGTGGCTTGTTTTGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGCGTCACGGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGCGAATATTTGGACAAGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACATCTTCTAGAGAATGAGGTTCAGG
CATTCGATTTAAGTAAAGCTTTGGCATGACTA-CGACAGCCTAGTAATTGGCATAGGAAGTAATCAGCTAGGCGTGTCAG
TGATCTATGCCTGTTAGCTTTCTTTAGCCAGTTCTACAATTTCTAAGAAACCTGAATACCTTCAGGGTTCAATTT-TGGA
CCAATAATGTGTTGTCGCCTTTTCCTTGGATCCTTGATGTTGCCAGGCATTTAACTATTTTGGCGTGTGAGAACTGATGA
TGTTGCTGCAGCGCTTGTACAACACCTTTATTTTCATTTTTTTCCTTGATTTTTTGTCTCCCCACTTCACACAATGTTCC
TCTTTCTCTATATTAGATTGAACAAAAAATGCATGTGTGTGCATATTCGAACTTCAGAGAACCTGAACTCTCTCTTAATC
GTTGTGGATGTTTTTTTATGCAGATGCGGGAGGAAGAAAAAGACAGCAATCAACACACACATTCTAAA---AAA-----T
GTTGTTTTCACTTCCTTACTACAGCAATGTGAGAGAC-T-ATAAAAATGAGGAAGTTCAACCTTATCTTTGTGAAGGTTC
AGTGAGTGTACCAGTAGCAGGAATTCGCAGACTGCAAAAAA--GAAA---------------------------------
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>chr3A_1249
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-------------------------------------------------------GGGCATCGACACCAAGCTACTCTTC
GCCATCTGCATCCCAAGG------GCAGTGCC-----TACCTAAACCAAAAGCATCC------ATCTCTCTGACTTGCTG
GTGGTACCTCGCGATTAACATCGAACTC---TTCCTGTCTGATTGCAGCACCGTTGACTTGCACCCGCAAAATCATGAAG
ATCTTGGCAAGGCTGCGGCTGACCCAGGTCCTCACCGGTGTCTTCCTCAAGGCCACCGAAGCAAACCTCAAGAGGCTTGC
TGCTATTGGACCGTTTG-CACCTATGGGTAACTGACTGAATGGAAATATCTTCTCTATTGGTGTGGCTTGTTTCGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGCGTCACGGTAGGTTACCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGTGAATATTTCAACAAGGAGCCTTTC-----------------------------
----------TCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACAACTTCAGGAGAATGAGGTTCATG
CATTCGATTTAAGTAAAGCTTTGGCATGACTA-CGATAGCCTAGTAATTGGCATAAGAAGTAATCAGCTAGGCGTGTCAG
TGATCTATGCCTGTTAGCTTTCTTTAGCCAGTTCTACAATTTCTAAGAAACCTGAATACCTTCAGGGTTCAATTC-TGGA
CCAATAATATGTTGTCGCCTTTTCCCTGGATCCTTGATGTTGCCATGCATTTAACTATTTTGGCGTGTGAGAACTGATGA
TGTTGCTGCAGCGCTTGTACAACACCTTTCTTTTCATTTTTTCCCTTGATTTTGTGTCTCCCCACTCCGCACAATGTTCC
TCTTTCTCTATATTAGATTGAACAAAAAATGCATGTGTGTGCATATTCGAACTTCAGAGAGCCTGAACTCTCTCTTAATC
GTTGTGGATGTTTTTTTGTGCAGATGCAGGAGGAAGAAAAAGACAACAATCAACACACACGTGCTAAA---AAA----AT
GTTGTTTTCACTTCCTTACTACGGCAATGTGAGAGAC-T-ATAAAAATGAGGAAGTTCAATCTTATCTTTGTGAAGGTTC
AGTGAGTGTACCAGTAGCAGGAATTCGCAGACTGCAAAAAA--GAAA---------------------------------
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>chr3A_1252
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----------------------------------------------------------CATCGACGCCAAGCTACTTTTT
GCCATACACATCCCAGGG------GCAGTGCC-----TACCTAAACGAAAAGCATCC------ATCTCTCTGACTTGCTG
GTGGTACCTCGCGATTAACATCAAACTC---TTCCTGTCTGATTGCAGCATCGCTAACTTGCACCAGCAAAATCGTGAAG
ATCTTGGCAAGGCTACGGCTGACCCAGGTCCTCACCGGTGTCTTCCTCAAGGCCACCGAAGCAAACCTCAAGAGGCTTGC
TGCTGTTGGACCGTTTG-CACCTATGGGTAACTGACTGAATGGAAATATCTTCTCCACTGGTGTGGCTTGTTTCGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGCGTCACGGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACAAGAAGGGTCGCGAATATTTGGACAAGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACATCTTCTGGAGAATGAGGTTCAGG
CATTCGATTTAAGTAAAGCTTTGGCATGACTA-CGGCAGCCTAGTAATTGGCATAGGAAGTAATCAGCTAGGCGTGTCAG
TGATCTATGCCTGTTAGCTTTCTTTAGCCAGTTCTACAACTTCTAAGAAACCTGAATACCTTCAGGGTTCAATTT-TGGA
CCAATAATATGTTGTCGCCTTTTCCCTGGATCCTTGATGTTGCCAGGCATTTAACTATTTTGGCGTGTGAGAACTGATGA
TGTTGCTGCAGCGCTTGTACAACACCTTTATTTTCATTTTTT-CCTTGATTTTGTGTCTCCCCACTCCGCACAATGTTCC
TATTTCTCTATATTAGATCGAACAAAAAATGCATGCGTGTGCATATTCGAACTTCAGAGAACCTGAACTCTCTCTTAATC
ATTGTGGATGTTTTTTTATGCAAATGCAGGAGGAAGAAAAAGACAGCAATCAACACACACGTTCTAAA---AAA----AT
GTTGTTTTCACTTCCTTACTACGGCAATGTGAGAGAC-T-ATAGAAATGAGGAAGTTCAACCTTATCTTTGTGAAGGTTC
AGTGAGTGTACCAGTAGCAGGAATTCGCAGACTGCAAAAAA--GAAA---------------------------------
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>chr6D_1439
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-------------------------AGGTCCTCACCGGTGTCTTCCTCAAGGCCACCGAGGCAAACCTCAAGAGACTTGC
TGCTGTTGGACCGTTCGTCACCTATGGGTAACTCACTGAATGGAAATATCTTCTCCATTGGTGTGGCTTGTTTCGCCAGT
TTTGTACTAGTAGTTTACAGTG------ATTGAATGTTGTTAATTGGTGTCACGGTAGGTTCCCCAATTTGAAGAATGTG
AAGGAGCTTATTTACA------------------------AGGAGCCTTTC-----------------------------
----------CCCCTTACCAGCAATGATCTAATCGAGAAGGTATAATTTCTGTGACATCTTCTGGAGAATGAGGTTCAGA
CATTTGATTAAAGTAAAGCTTTGGCATGACTA-CGGCAGCCTAGTAATTGGCATAGGAAGTAATCAGCTAGGAGTGTCAG
TGATCTGTGCGTGTTAGCTTTCTTTAGCCAGTTCTACAATTGGTAAGAAACCTGAATACCTTCAGGGTTCAATTC-TGGA
CCGATAATATGTTGTCGCCTTTTCCCTGTATCCTTGATGTTGCCAGGCATTTAACTATTTTGCGGTGTGAAAACAGATGA
TGTTGCTGCAGCGCTAGTACAACACCTTTCTTTTCATTTTTT-CCTTGATTTTGTGTCTCCCCACTCCGCACAATGTTCC
TCTTTCTCTGTATCAGATTGAACAAAAA-TGCATGTGTGCGCATACTCCAACTTCAGAGAACCTGAACTCTCTCTTAATC
GTTGTGGATGTTTTTTTGTGCAGAGGCAGGAGGAAG-AAAAGACAGCAATCAACACACACGTTCTGAA---AAAAAAAAT
GTTGTTTTCACTTCCTTACTACGGCAATGTGAGAGAC-TTATAAAAATGAGGAAGTTCAACCTTATCTTTGTGAAGGTTC
AGTGAGTGTACCAGTAGCAGGAATTCGCAGACTGCAAAAAAAAGAAAATCTTTCAAAAAAAACAACACACCTTGGGTGGG
GGACTGTTTGCTGCTGGAGCTCATATTTGTGTTTTTCGTGCAGTGTTTTCAGGTGCATCGGAAGGTGTTATGACAATCTC
CGCTGTTTCTACACGG--CGCCGGTCCGCCACATCTCAACTAGCATCTACTACTACATGTTGTACTAGGCATGCTCGATT
TCTTAAGCTCAAAAGTTTGATTTTGCCATGCTTTCCGCG---GGGCAAATGTGCTGTGCTGGGTAGCAAGGATTTGGGAT
CCGCTGCTTCTCGATGTGCGGCCTCATACCATTGAACTTGATTGCTCAGGCCTCTACGATACTATGATCTCTGTTTGCAA
TTTGCTTCTTGTAAATACTATTGCGGATTCAGATGGGGTTGTATTATTTCCAATTGTATTCTTCTGAGCTTGTGTTTTAA
------TTGAAAAAAATGTGCGTGTGAACAAGAGAAAAAGAATATGTACAAAAGAAGTTCGTGTATCACTTCCCTGAGAG
TTCTTGTATTACTCCCTAAAGAGTTCAAGCATTGCTATCCAGTTTGTGCACAAATAATTCTCTTTCCTGTATGTGTCTAT
GTTTT-CGAAACTACAATGATCCAAAAAAAAA-A------GATGTAACCAATCT-AAAAAGTTTTGTAATTGCTACTATT
TG-----------------------TTGCGATGTCTAAAAGAGAATTGAGTTTTCGTTGAAATTCAAATAAATAAATATG
AGCTGTTATATGTTAAAATAAATAATTGAAAAGGCCCCAAGGAGTCCAAATTTTAGAAAAGTAGCAGTTCGATG------
----TTTATATAAAATTTAGACTGTTCTCATTATAAAAGAATGAATAC-AAGAAGTTCAAAAATAAATAAAAAAGAAGTT
TGTATTTTAAAAATACAGCAGTTCAAAAATCTTAAAAAGGATTTACGCTG--TTTCTAAATTAAAAAACTCTAGAAGTAC
TAATTTAAACAACGGTCTGGTTCAATAATTATTACAAAACTAGGATTTTTTTCGTTAATAAAAGGAATAAACCAAGAAGT
CCAAATTACGAAAATATAGAAGTTCGATATTTATAAAAATATCATATTTT-CCTTGTTACTAAAGAATAAAAATAAAGAA
GTTTAAATTAAAATAA
>chr6D_2386
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-----------------------------------------------------------------------TTGGGTGGG
GGTCTGTTTGCTGCTGGAGCTCATATTTGTGTTTTTCGTGCAGTGTTTTCAGGTGCATCAGAAGGTGTTATGACAATCTC
CGCTATTTCTACACTGGACGCCGGTCCGCCACATCTCAACTAGTATCTACTACTACATGTTGTACTAGGCATGCTCAATT
TCTTAAGCTCAAAAGTTTGATTTTGCCATGCTTTCTGTTTCAGGGCAAATGTGATGTGCTGGGCAGCAAG-ATTTGGGAT
CCGGTGCTTCTCGATGTGCGGCCTCATACCACTGAACTTGATTGCTCAGGCCTCTACGATACTACGATCTCTGTTTGCAA
TTTGCTTCTTGTAAATACTACTGCAGATTCAGATTGGGTTGTATTATTTCCAATTGTATTCTTCTGTGCTTGTGTTTTAA
------TTGAAAAAAATGTGCGTGTGAACAAGAGAAAAAGAATGTGTACAAAAGAAGTTCGTGTATCACTTCCCTGAGAG
TTCTTATATTACTCCCTAGAGAGTTCAAGTATTGCTATCCAGTTTGTGCACACATAATTCTCTTTCCTGTATGTGTCTAT
GTTTT-CAAAACTACAATGATACAAAACAAAA-AAAATA--ATGTAACCAATCT-AAAAAGTTTTGTAATTGCTAATATT
TG-----------------------TTGCGATGTCTAAAAGAGAATTGATTTTTTGTTGAAGTTCAAATAAATAAATATG
AGCGGTTATATGTTAAAATAAATAATTGAAAAAGCCCCAAGGAGTCCAAATTTTAGAAAAGTAGCAGTTCGACGTTTATA
TCTATTTATATAAAATTTAGACCGTTCTCATTATAAAAGAATGAATAC-AAGAAGTTCAAAAATTAAAAAACAAGAAGTT
TGTATTTTAAAAATAGAGCAATTCAAAAATCTTAAAAAGGATTAACGCCG--TTTCTAAATTAAAAAATTCTAGAAGTAC
TAATTTAAGTAACGGTCTGGTTCAATAATTATTACAAAACTAGGATTTTTTT-GTTAATAAAAGAAATAAGCCAAGAAGT
CCAAATTACGAAAATATTGAAGTTTCATATTTATAAAAATATCATATTTT-CCTTGTTACTAAAGAATAAAAATGAAGAA
TTTTAAATTAAAATAA
>chr4B_2744
AGATTT--------------------------------------------------------------------------
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-----------------------------------GGGTTGTATTATTTCCAATTGTATTCCTCTGAGATTGTGTTTTTA
TTTGTTTTGAAAAGAATGTGCATGTGAACAAGATACAAAGAATATGTATAGAAGAAGTTTGTGTATCACCTCCGTGAGAG
TTCTTCTATT-----------------------GTTATCCAGTTTGTGCACACATAATTCTCTTTCCCGTATGTGT--AT
GTTTTTCGAAACTACAATTGTCCAAAATAAAA-AAAATCATATGTGACCAATCT-AAAAAGTTTTGCAATTGCTACTACT
TG-----------------------TTATGATGTCTAAAAAAGAATTGAGTTTTCGTTGAGGTTC-AATAAATAAATATG
AGCGGTTCTATGTTAAA-TAGATAATTGAAAAAGCCC-AAGAAGTTCAAATAA-AAAGAAGGAGCAGTTCGATG------
----TTTATACAAAATTCATATTTTACTCATAA-TAAAGAATGAAAAC-AAGAAGTTCAAAAATAAAAAAACAAGAAGTT
TAATTTTTTAAAATAGAGCATCTCAATAATCACAAAATAGGATTGTCACTGTTTCAGAATAAAAAAAACTATAGGAATGC
ATATTTAGACAATGGATTGGTTCAATATTTATTACAAAACTAGAATTTTTTCCGTTACTACAAGAAATAAACCAAGAAGT
CCACATTACCAAATCATAGAAGTTCAATATTTATAAAAATCTCAAATTTT-CCTTGTAACTAAAGAATAAAAATGAAGAA
GTTCAAATTAAAATAA
>chr4A_2744
AGATTT--------------------------------------------------------------------------
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-----------------------------------GGGTTGTATTATTTCCAATTGTATTCCTCTGAGCTTGTGTTTTTA
TTTGTTTTGAAAAGAATGTGCATGTGAACAAGAGAAAAAGAATATGTACAGAAGAAGTTTGTGTATCACATCCGTGAGAG
TTCT-----------------------TGTATTGTTATCCAGTTTCTGCACACATAATTCTCTTTCACGTATGTGTCTAT
GTTTTTTGAAACTACAATGATCCAAAATAAAA-AAAATCACATGTAACCAATCT-GAAAAGTTTTGCAATTCCTACTACT
TG-----------------------TTATGATGTCTAAAAAAGAATTGAGTTTTCATTGAAGTTC-AATAAATAAATATG
AGCGGTTTTATGCTAAA-TAGATAATTGAAAAAGCCT-AAGAAGTTCAAATAA-AAAGAAGGAGCAGTCCGATG------
----TTTATACAAAATTCATATTTTACTCATAATTAAAGAATGAAAAC-AAGAAGTTCAAAAA-------AAAAGAAGTT
TATTTTTTTTAAATAGAGCATCTCAATAATCACAAAATAGGATTGTCACTGTTTCATAATAAACAAA--TATAGGAATGC
ATATTCAAATAACTGATTTGTTCAATATTTATTACAAAACTTGAATTTTTTCCGTTACTATAAGAAATAAACCAAGAAGT
CCACATTACCAAATTAGAGAAGTTCAATATTTATAAAAATCGCAAATTTT-CCTTGTAACTAAAGAATAAAAATGAAGAA
GTTCAAATTAAAATAA
>chr3B_2816
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----------------------------CAAGAAAAAAAGACTA--TACAAAAGTAGTTCGTGTCTCACTTCCGTGAGAG
TTCTTTC-TTACTCCCTAGAGAGTTTGTGTATTGATATCTAGTTTGTGCACACATAATTCTCTCGCCTGTATGTGTCTAT
GTTTTTCCAAACTACAATGATACAAAACAAATCA------CATGTAACCAAACTGAAAAACTTTTGCAATTGCTACTGTT
TGAACTCTCTGGATATTAAAAACTTTTGCACTTGCTACAGAAAAACTGAAAAACTACAATGATACAAAAAACATCACATG
TC----------------TAAATAATTGAAAAAAGCCCAAAAAGTCCAAATTA-AAAAAAGGAGCAGCTCGATG------
----TTTATACAAAATTCATATTTTCCTTATTATTAAAGAATGAAAATTAAGAAGTTCAAAAATAAAAAAACTAGAAGTT
CAAA-TTTAAAAATAGAGTACTTCAAAATTCATAAAAAAAATCA-----TGATTTCTAAATAAAAAAACTCTAGAAGTTA
AAATTTAATTAAAGAACTAGTTGAATATTTTATGCAAAACCTAGGATTCTTCCGTTACTAAAAGAAATAAACCAAGAAGT
CCAAATTATAGAAATAGAGAAGTTCGATATTTATAAAAAACTCAGATTTTTCCTTGTTACTAAAGAAGAAAAATGAAGAA
GTTCACATTAAAATAA
>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S
---S------S-----------------------------------------S---------------S---S-------
S----SS--------------------S------S-------S----------------S----S----------S----
-------------------------------------------------------------S------SS--------S-
S-------S---------------S---------------SSS-------------------------SS---------S
---S-----------S--------------------S-S-------------S---------S-----S-----------
S--SSS----------S--------------------S-----S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------------------S--------------------------------S--------S---
--------------------------------------------------------------------------------
--S-----S-------------------S------------S--------S-----------------------------
----------------------------------------S--------------------------------S------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
----------------S-----SSS-------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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--------S-------------------S-----------S---------------------------------------
------------------S-----------------------------------------------S-------------
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--------------------------------------------------------------------SSS---------
--------SS---------------------------S------------------------------------------
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--------------S-------------------------------------------------------------S---
-----------------------------------------------------S--------------------------
-S-S-----------------S----------------------------------S-----------------------
--------------------------------------------------------------------------------
---------------------------S-----------------S-S---------------------------S----
----------------------S---------------------------------------------------------
----------------------S--------SS-------------------------------S---------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
-------S--------------------------S-----S----------------S-------------------S--
------------------S--------------S---------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
----------------
>forward_948
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------------------------------------------------CCGCCTTTTCCCTGAATCCT------------
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>reverse_2724
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---TTGCTTCTCGATGTGCGGT----------------------------------------------------------
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----------------
