Multiple sequence alignment - TraesCS1D01G125800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G125800 chr1D 100.000 2519 0 0 1 2519 135725368 135727886 0.000000e+00 4652
1 TraesCS1D01G125800 chr1D 96.648 179 6 0 2111 2289 254498950 254498772 5.270000e-77 298
2 TraesCS1D01G125800 chr1D 96.648 179 6 0 2111 2289 318665432 318665254 5.270000e-77 298
3 TraesCS1D01G125800 chr1A 94.925 1675 53 11 264 1935 193516712 193518357 0.000000e+00 2593
4 TraesCS1D01G125800 chr1A 93.852 244 11 4 1 240 121464688 121464931 5.120000e-97 364
5 TraesCS1D01G125800 chr1A 88.953 172 15 3 2349 2517 11654957 11654787 2.540000e-50 209
6 TraesCS1D01G125800 chr1B 95.609 1503 42 9 432 1932 215535240 215536720 0.000000e+00 2388
7 TraesCS1D01G125800 chr1B 90.805 174 12 4 2349 2519 518183607 518183779 1.950000e-56 230
8 TraesCS1D01G125800 chr1B 90.244 164 14 2 2357 2519 175155901 175155739 1.960000e-51 213
9 TraesCS1D01G125800 chr2A 95.217 230 8 3 1 229 622258982 622258755 6.620000e-96 361
10 TraesCS1D01G125800 chr2A 93.966 232 11 2 1 230 44176789 44177019 5.160000e-92 348
11 TraesCS1D01G125800 chr3D 94.783 230 11 1 1 229 583618455 583618684 8.570000e-95 357
12 TraesCS1D01G125800 chr3D 96.648 179 6 0 2111 2289 21905579 21905401 5.270000e-77 298
13 TraesCS1D01G125800 chr3A 93.388 242 12 3 1 238 264956659 264956900 3.080000e-94 355
14 TraesCS1D01G125800 chr3A 92.975 242 12 4 1 238 264956972 264957212 5.160000e-92 348
15 TraesCS1D01G125800 chr3A 88.571 175 15 5 2349 2519 576608888 576609061 9.130000e-50 207
16 TraesCS1D01G125800 chr5D 94.348 230 11 2 1 229 316091091 316091319 3.990000e-93 351
17 TraesCS1D01G125800 chr5D 96.629 178 6 0 2112 2289 560873419 560873242 1.890000e-76 296
18 TraesCS1D01G125800 chr7D 93.966 232 12 2 1 231 91853115 91852885 1.430000e-92 350
19 TraesCS1D01G125800 chr4D 93.590 234 12 3 1 233 451869789 451869558 1.850000e-91 346
20 TraesCS1D01G125800 chr3B 97.207 179 5 0 2111 2289 201514590 201514412 1.130000e-78 303
21 TraesCS1D01G125800 chr3B 97.175 177 5 0 2113 2289 201514051 201513875 1.460000e-77 300
22 TraesCS1D01G125800 chr7B 96.196 184 6 1 2106 2289 45214768 45214950 1.460000e-77 300
23 TraesCS1D01G125800 chr7B 96.154 182 7 0 2108 2289 45215234 45215415 5.270000e-77 298
24 TraesCS1D01G125800 chrUn 96.154 182 7 0 2108 2289 445812108 445812289 5.270000e-77 298
25 TraesCS1D01G125800 chr6A 93.064 173 9 2 2349 2519 54489187 54489016 1.500000e-62 250
26 TraesCS1D01G125800 chr4A 90.230 174 13 3 2349 2519 739269994 739270166 9.070000e-55 224
27 TraesCS1D01G125800 chr4A 88.953 172 15 4 2351 2519 82738119 82737949 2.540000e-50 209
28 TraesCS1D01G125800 chr7A 89.595 173 14 4 2349 2519 493122076 493121906 1.520000e-52 217
29 TraesCS1D01G125800 chr4B 89.941 169 14 2 2353 2519 169033008 169032841 5.460000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G125800 chr1D 135725368 135727886 2518 False 4652.0 4652 100.0000 1 2519 1 chr1D.!!$F1 2518
1 TraesCS1D01G125800 chr1A 193516712 193518357 1645 False 2593.0 2593 94.9250 264 1935 1 chr1A.!!$F2 1671
2 TraesCS1D01G125800 chr1B 215535240 215536720 1480 False 2388.0 2388 95.6090 432 1932 1 chr1B.!!$F1 1500
3 TraesCS1D01G125800 chr3A 264956659 264957212 553 False 351.5 355 93.1815 1 238 2 chr3A.!!$F2 237
4 TraesCS1D01G125800 chr3B 201513875 201514590 715 True 301.5 303 97.1910 2111 2289 2 chr3B.!!$R1 178
5 TraesCS1D01G125800 chr7B 45214768 45215415 647 False 299.0 300 96.1750 2106 2289 2 chr7B.!!$F1 183

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 788 1.30008 ACCCGTCGTTGTTACACCG 60.3 57.895 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1997 2129 0.032912 TATGTGACCGGGCTGTAGGA 60.033 55.0 9.82 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.557891 ATGCAGTGCAGAATAAAGAGTTC 57.442 39.130 24.20 0.00 43.65 3.01
61 62 8.012957 TCAATGTTTGTGTACCACCTTTATTT 57.987 30.769 0.00 0.00 32.73 1.40
71 72 5.138125 ACCACCTTTATTTTGTGCATCAG 57.862 39.130 0.00 0.00 0.00 2.90
80 81 8.800370 TTTATTTTGTGCATCAGGTGTATAGA 57.200 30.769 0.00 0.00 0.00 1.98
125 127 7.908082 TCAAAGTACATTGCAAGCGTATTATTC 59.092 33.333 4.94 0.00 0.00 1.75
200 202 7.148188 TGCAACCAATACAAATTTTCAAAAGCA 60.148 29.630 0.00 0.00 0.00 3.91
229 231 1.386533 GCACGGGCAGTCTACTAGTA 58.613 55.000 3.77 1.89 40.72 1.82
230 232 1.334243 GCACGGGCAGTCTACTAGTAG 59.666 57.143 21.87 21.87 40.72 2.57
236 238 5.129485 ACGGGCAGTCTACTAGTAGTAGTAA 59.871 44.000 28.50 13.89 46.31 2.24
237 239 5.465056 CGGGCAGTCTACTAGTAGTAGTAAC 59.535 48.000 28.50 22.15 46.31 2.50
238 240 6.591001 GGGCAGTCTACTAGTAGTAGTAACT 58.409 44.000 28.50 23.57 46.31 2.24
239 241 7.053498 GGGCAGTCTACTAGTAGTAGTAACTT 58.947 42.308 28.50 13.40 46.31 2.66
240 242 7.555914 GGGCAGTCTACTAGTAGTAGTAACTTT 59.444 40.741 28.50 9.88 46.31 2.66
241 243 8.611757 GGCAGTCTACTAGTAGTAGTAACTTTC 58.388 40.741 28.50 19.77 46.31 2.62
242 244 9.382275 GCAGTCTACTAGTAGTAGTAACTTTCT 57.618 37.037 28.50 16.50 46.31 2.52
277 279 5.570234 TTTTGGCGAGGTTATTTGATACC 57.430 39.130 0.00 0.00 34.54 2.73
281 283 3.181458 GGCGAGGTTATTTGATACCTGGA 60.181 47.826 0.00 0.00 44.65 3.86
306 308 2.507484 CACCATCCTCACTTTGCTGAA 58.493 47.619 0.00 0.00 0.00 3.02
312 314 2.703536 TCCTCACTTTGCTGAACCTGTA 59.296 45.455 0.00 0.00 0.00 2.74
452 454 3.488778 AGCCATCATCAATCACTCTCC 57.511 47.619 0.00 0.00 0.00 3.71
541 545 3.068307 CGTACTCCTATTTCCCCTCAGTG 59.932 52.174 0.00 0.00 0.00 3.66
780 784 2.660612 CGGCACCCGTCGTTGTTAC 61.661 63.158 0.00 0.00 42.73 2.50
784 788 1.300080 ACCCGTCGTTGTTACACCG 60.300 57.895 0.00 0.00 0.00 4.94
802 806 1.366111 CGAGTTTACATGTGGGCCGG 61.366 60.000 9.11 0.00 0.00 6.13
869 873 3.058914 CGTGATATTTCGGCCAAGAATCC 60.059 47.826 2.24 0.00 0.00 3.01
1689 1766 8.349983 GCGGGTGAAGTGATTAATTATGTAAAT 58.650 33.333 0.00 0.00 0.00 1.40
1753 1885 5.414765 GTGTACTAAGAAATTTGGTCTGGGG 59.585 44.000 0.00 0.00 0.00 4.96
1808 1940 8.887036 AACTCTTTGTTTTTCTGTTTGAAACT 57.113 26.923 9.69 0.00 43.55 2.66
1809 1941 8.520835 ACTCTTTGTTTTTCTGTTTGAAACTC 57.479 30.769 9.69 0.00 43.55 3.01
1810 1942 8.360390 ACTCTTTGTTTTTCTGTTTGAAACTCT 58.640 29.630 9.69 0.00 43.55 3.24
1811 1943 9.196552 CTCTTTGTTTTTCTGTTTGAAACTCTT 57.803 29.630 9.69 0.00 43.55 2.85
1812 1944 9.541143 TCTTTGTTTTTCTGTTTGAAACTCTTT 57.459 25.926 9.69 0.00 43.55 2.52
1813 1945 9.584839 CTTTGTTTTTCTGTTTGAAACTCTTTG 57.415 29.630 9.69 0.00 43.55 2.77
1814 1946 8.655651 TTGTTTTTCTGTTTGAAACTCTTTGT 57.344 26.923 9.69 0.00 43.55 2.83
1815 1947 8.655651 TGTTTTTCTGTTTGAAACTCTTTGTT 57.344 26.923 9.69 0.00 43.55 2.83
1840 1972 6.395426 TTCTGTTTGAAACTCATGCAGAAT 57.605 33.333 9.69 0.00 39.83 2.40
1885 2017 3.058224 GTGAAAATCGGGTCTGGAAGTTG 60.058 47.826 0.00 0.00 33.76 3.16
1906 2038 3.262151 TGTTGGGGACGATGTTGAATCTA 59.738 43.478 0.00 0.00 0.00 1.98
1913 2045 6.154706 GGGGACGATGTTGAATCTATATACCT 59.845 42.308 0.00 0.00 0.00 3.08
1935 2067 7.712797 ACCTTTTGTTGTACTCAAATTACCAG 58.287 34.615 14.09 9.77 35.25 4.00
1936 2068 6.640907 CCTTTTGTTGTACTCAAATTACCAGC 59.359 38.462 14.09 0.00 35.25 4.85
1937 2069 6.952773 TTTGTTGTACTCAAATTACCAGCT 57.047 33.333 10.91 0.00 35.20 4.24
1938 2070 6.952773 TTGTTGTACTCAAATTACCAGCTT 57.047 33.333 0.00 0.00 35.20 3.74
1939 2071 8.453238 TTTGTTGTACTCAAATTACCAGCTTA 57.547 30.769 10.91 0.00 35.20 3.09
1940 2072 7.667043 TGTTGTACTCAAATTACCAGCTTAG 57.333 36.000 0.00 0.00 35.20 2.18
1941 2073 6.653320 TGTTGTACTCAAATTACCAGCTTAGG 59.347 38.462 0.00 0.00 35.20 2.69
1942 2074 5.741011 TGTACTCAAATTACCAGCTTAGGG 58.259 41.667 0.00 0.00 0.00 3.53
1943 2075 3.621558 ACTCAAATTACCAGCTTAGGGC 58.378 45.455 0.00 0.00 42.19 5.19
1944 2076 3.010138 ACTCAAATTACCAGCTTAGGGCA 59.990 43.478 0.00 0.00 44.79 5.36
1945 2077 4.210331 CTCAAATTACCAGCTTAGGGCAT 58.790 43.478 0.00 0.00 44.79 4.40
1946 2078 4.207165 TCAAATTACCAGCTTAGGGCATC 58.793 43.478 0.00 0.00 44.79 3.91
1947 2079 3.951563 AATTACCAGCTTAGGGCATCA 57.048 42.857 0.00 0.00 44.79 3.07
1948 2080 4.459852 AATTACCAGCTTAGGGCATCAT 57.540 40.909 0.00 0.00 44.79 2.45
1949 2081 3.492102 TTACCAGCTTAGGGCATCATC 57.508 47.619 0.00 0.00 44.79 2.92
1950 2082 1.216064 ACCAGCTTAGGGCATCATCA 58.784 50.000 0.00 0.00 44.79 3.07
1951 2083 1.565759 ACCAGCTTAGGGCATCATCAA 59.434 47.619 0.00 0.00 44.79 2.57
1952 2084 1.952296 CCAGCTTAGGGCATCATCAAC 59.048 52.381 0.00 0.00 44.79 3.18
1953 2085 1.600957 CAGCTTAGGGCATCATCAACG 59.399 52.381 0.00 0.00 44.79 4.10
1954 2086 1.486310 AGCTTAGGGCATCATCAACGA 59.514 47.619 0.00 0.00 44.79 3.85
1955 2087 2.105477 AGCTTAGGGCATCATCAACGAT 59.895 45.455 0.00 0.00 44.79 3.73
1956 2088 2.225019 GCTTAGGGCATCATCAACGATG 59.775 50.000 0.00 0.00 44.69 3.84
1957 2089 2.549064 TAGGGCATCATCAACGATGG 57.451 50.000 4.24 0.00 42.58 3.51
1958 2090 0.839277 AGGGCATCATCAACGATGGA 59.161 50.000 4.24 0.00 42.58 3.41
1959 2091 1.422781 AGGGCATCATCAACGATGGAT 59.577 47.619 4.24 0.00 42.58 3.41
1960 2092 1.808945 GGGCATCATCAACGATGGATC 59.191 52.381 4.24 0.00 42.58 3.36
1961 2093 2.497138 GGCATCATCAACGATGGATCA 58.503 47.619 4.24 0.00 42.58 2.92
1962 2094 3.079578 GGCATCATCAACGATGGATCAT 58.920 45.455 4.24 0.00 42.58 2.45
1963 2095 3.504906 GGCATCATCAACGATGGATCATT 59.495 43.478 4.24 0.00 42.58 2.57
1964 2096 4.696877 GGCATCATCAACGATGGATCATTA 59.303 41.667 4.24 0.00 42.58 1.90
1965 2097 5.181811 GGCATCATCAACGATGGATCATTAA 59.818 40.000 4.24 0.00 42.58 1.40
1966 2098 6.294120 GGCATCATCAACGATGGATCATTAAA 60.294 38.462 4.24 0.00 42.58 1.52
1967 2099 7.140705 GCATCATCAACGATGGATCATTAAAA 58.859 34.615 4.24 0.00 42.58 1.52
1968 2100 7.811236 GCATCATCAACGATGGATCATTAAAAT 59.189 33.333 4.24 0.00 42.58 1.82
1969 2101 9.124807 CATCATCAACGATGGATCATTAAAATG 57.875 33.333 4.24 0.00 40.15 2.32
1970 2102 8.449251 TCATCAACGATGGATCATTAAAATGA 57.551 30.769 7.79 7.79 43.00 2.57
1971 2103 8.344831 TCATCAACGATGGATCATTAAAATGAC 58.655 33.333 7.52 2.98 42.41 3.06
1972 2104 7.592533 CATCAACGATGGATCATTAAAATGACC 59.407 37.037 7.52 11.00 40.64 4.02
1982 2114 4.644685 TCATTAAAATGACCAGCTTAGGGC 59.355 41.667 1.23 0.00 40.32 5.19
1986 2118 2.695561 TGACCAGCTTAGGGCATCA 58.304 52.632 0.00 0.00 43.33 3.07
1987 2119 1.216064 TGACCAGCTTAGGGCATCAT 58.784 50.000 0.00 0.00 43.33 2.45
1988 2120 1.141657 TGACCAGCTTAGGGCATCATC 59.858 52.381 0.00 0.00 43.33 2.92
1989 2121 1.141657 GACCAGCTTAGGGCATCATCA 59.858 52.381 0.00 0.00 44.79 3.07
1990 2122 1.565759 ACCAGCTTAGGGCATCATCAA 59.434 47.619 0.00 0.00 44.79 2.57
1991 2123 1.952296 CCAGCTTAGGGCATCATCAAC 59.048 52.381 0.00 0.00 44.79 3.18
1992 2124 1.600957 CAGCTTAGGGCATCATCAACG 59.399 52.381 0.00 0.00 44.79 4.10
1993 2125 0.947244 GCTTAGGGCATCATCAACGG 59.053 55.000 0.00 0.00 41.35 4.44
1994 2126 1.475034 GCTTAGGGCATCATCAACGGA 60.475 52.381 0.00 0.00 41.35 4.69
1995 2127 2.917933 CTTAGGGCATCATCAACGGAA 58.082 47.619 0.00 0.00 0.00 4.30
1996 2128 3.278574 CTTAGGGCATCATCAACGGAAA 58.721 45.455 0.00 0.00 0.00 3.13
1997 2129 2.442236 AGGGCATCATCAACGGAAAT 57.558 45.000 0.00 0.00 0.00 2.17
1998 2130 2.301346 AGGGCATCATCAACGGAAATC 58.699 47.619 0.00 0.00 0.00 2.17
1999 2131 1.338020 GGGCATCATCAACGGAAATCC 59.662 52.381 0.00 0.00 0.00 3.01
2000 2132 2.301346 GGCATCATCAACGGAAATCCT 58.699 47.619 0.00 0.00 0.00 3.24
2001 2133 3.476552 GGCATCATCAACGGAAATCCTA 58.523 45.455 0.00 0.00 0.00 2.94
2002 2134 3.251004 GGCATCATCAACGGAAATCCTAC 59.749 47.826 0.00 0.00 0.00 3.18
2003 2135 3.876914 GCATCATCAACGGAAATCCTACA 59.123 43.478 0.00 0.00 0.00 2.74
2004 2136 4.024556 GCATCATCAACGGAAATCCTACAG 60.025 45.833 0.00 0.00 0.00 2.74
2005 2137 3.531538 TCATCAACGGAAATCCTACAGC 58.468 45.455 0.00 0.00 0.00 4.40
2006 2138 2.396590 TCAACGGAAATCCTACAGCC 57.603 50.000 0.00 0.00 0.00 4.85
2007 2139 1.065709 TCAACGGAAATCCTACAGCCC 60.066 52.381 0.00 0.00 0.00 5.19
2008 2140 0.107848 AACGGAAATCCTACAGCCCG 60.108 55.000 0.00 0.00 42.30 6.13
2009 2141 1.227556 CGGAAATCCTACAGCCCGG 60.228 63.158 0.00 0.00 33.94 5.73
2010 2142 1.912971 GGAAATCCTACAGCCCGGT 59.087 57.895 0.00 0.00 0.00 5.28
2011 2143 0.179054 GGAAATCCTACAGCCCGGTC 60.179 60.000 0.00 0.00 0.00 4.79
2012 2144 0.539986 GAAATCCTACAGCCCGGTCA 59.460 55.000 0.00 0.00 0.00 4.02
2013 2145 0.252197 AAATCCTACAGCCCGGTCAC 59.748 55.000 0.00 0.00 0.00 3.67
2014 2146 0.907704 AATCCTACAGCCCGGTCACA 60.908 55.000 0.00 0.00 0.00 3.58
2015 2147 0.691078 ATCCTACAGCCCGGTCACAT 60.691 55.000 0.00 0.00 0.00 3.21
2016 2148 0.032912 TCCTACAGCCCGGTCACATA 60.033 55.000 0.00 0.00 0.00 2.29
2017 2149 1.048601 CCTACAGCCCGGTCACATAT 58.951 55.000 0.00 0.00 0.00 1.78
2018 2150 1.000955 CCTACAGCCCGGTCACATATC 59.999 57.143 0.00 0.00 0.00 1.63
2019 2151 0.671796 TACAGCCCGGTCACATATCG 59.328 55.000 0.00 0.00 0.00 2.92
2020 2152 1.956170 CAGCCCGGTCACATATCGC 60.956 63.158 0.00 0.00 0.00 4.58
2021 2153 2.665185 GCCCGGTCACATATCGCC 60.665 66.667 0.00 0.00 0.00 5.54
2022 2154 2.818841 CCCGGTCACATATCGCCA 59.181 61.111 0.00 0.00 0.00 5.69
2023 2155 1.594293 CCCGGTCACATATCGCCAC 60.594 63.158 0.00 0.00 0.00 5.01
2024 2156 1.142965 CCGGTCACATATCGCCACA 59.857 57.895 0.00 0.00 0.00 4.17
2025 2157 0.461163 CCGGTCACATATCGCCACAA 60.461 55.000 0.00 0.00 0.00 3.33
2026 2158 1.364721 CGGTCACATATCGCCACAAA 58.635 50.000 0.00 0.00 0.00 2.83
2027 2159 1.939934 CGGTCACATATCGCCACAAAT 59.060 47.619 0.00 0.00 0.00 2.32
2028 2160 2.354510 CGGTCACATATCGCCACAAATT 59.645 45.455 0.00 0.00 0.00 1.82
2029 2161 3.694734 GGTCACATATCGCCACAAATTG 58.305 45.455 0.00 0.00 0.00 2.32
2030 2162 3.376859 GGTCACATATCGCCACAAATTGA 59.623 43.478 0.00 0.00 0.00 2.57
2031 2163 4.496341 GGTCACATATCGCCACAAATTGAG 60.496 45.833 0.00 0.00 0.00 3.02
2032 2164 3.627123 TCACATATCGCCACAAATTGAGG 59.373 43.478 5.05 5.05 0.00 3.86
2033 2165 2.951642 ACATATCGCCACAAATTGAGGG 59.048 45.455 11.26 7.68 0.00 4.30
2034 2166 3.213506 CATATCGCCACAAATTGAGGGA 58.786 45.455 11.26 10.04 0.00 4.20
2035 2167 2.214376 ATCGCCACAAATTGAGGGAA 57.786 45.000 11.26 0.36 0.00 3.97
2036 2168 1.533625 TCGCCACAAATTGAGGGAAG 58.466 50.000 11.26 5.21 0.00 3.46
2037 2169 1.202879 TCGCCACAAATTGAGGGAAGT 60.203 47.619 11.26 0.00 0.00 3.01
2038 2170 1.613437 CGCCACAAATTGAGGGAAGTT 59.387 47.619 11.26 0.00 0.00 2.66
2039 2171 2.607771 CGCCACAAATTGAGGGAAGTTG 60.608 50.000 11.26 0.00 43.74 3.16
2040 2172 2.627699 GCCACAAATTGAGGGAAGTTGA 59.372 45.455 11.26 0.00 41.25 3.18
2041 2173 3.305608 GCCACAAATTGAGGGAAGTTGAG 60.306 47.826 11.26 0.00 41.25 3.02
2042 2174 3.891366 CCACAAATTGAGGGAAGTTGAGT 59.109 43.478 0.00 0.00 41.25 3.41
2043 2175 4.022849 CCACAAATTGAGGGAAGTTGAGTC 60.023 45.833 0.00 0.00 41.25 3.36
2044 2176 4.022849 CACAAATTGAGGGAAGTTGAGTCC 60.023 45.833 0.00 0.00 41.25 3.85
2045 2177 2.770164 ATTGAGGGAAGTTGAGTCCG 57.230 50.000 0.00 0.00 35.86 4.79
2046 2178 0.685097 TTGAGGGAAGTTGAGTCCGG 59.315 55.000 0.00 0.00 35.86 5.14
2047 2179 0.178944 TGAGGGAAGTTGAGTCCGGA 60.179 55.000 0.00 0.00 35.86 5.14
2048 2180 0.246910 GAGGGAAGTTGAGTCCGGAC 59.753 60.000 27.67 27.67 35.86 4.79
2049 2181 1.080025 GGGAAGTTGAGTCCGGACG 60.080 63.158 28.26 0.00 35.86 4.79
2050 2182 1.664306 GGAAGTTGAGTCCGGACGT 59.336 57.895 28.26 16.89 36.20 4.34
2051 2183 0.388263 GGAAGTTGAGTCCGGACGTC 60.388 60.000 28.26 23.78 36.20 4.34
2052 2184 0.388263 GAAGTTGAGTCCGGACGTCC 60.388 60.000 28.26 25.28 36.20 4.79
2070 2202 2.006772 CGCCATGTCGGACTTTAGC 58.993 57.895 9.88 7.55 36.56 3.09
2071 2203 0.460284 CGCCATGTCGGACTTTAGCT 60.460 55.000 9.88 0.00 36.56 3.32
2072 2204 1.739067 GCCATGTCGGACTTTAGCTT 58.261 50.000 9.88 0.00 36.56 3.74
2073 2205 1.398390 GCCATGTCGGACTTTAGCTTG 59.602 52.381 9.88 0.00 36.56 4.01
2074 2206 2.935238 GCCATGTCGGACTTTAGCTTGA 60.935 50.000 9.88 0.00 36.56 3.02
2075 2207 3.535561 CCATGTCGGACTTTAGCTTGAT 58.464 45.455 9.88 0.00 36.56 2.57
2076 2208 3.557595 CCATGTCGGACTTTAGCTTGATC 59.442 47.826 9.88 0.00 36.56 2.92
2077 2209 3.247006 TGTCGGACTTTAGCTTGATCC 57.753 47.619 9.88 0.00 0.00 3.36
2078 2210 2.093658 TGTCGGACTTTAGCTTGATCCC 60.094 50.000 9.88 0.00 0.00 3.85
2079 2211 2.093658 GTCGGACTTTAGCTTGATCCCA 60.094 50.000 0.00 0.00 0.00 4.37
2080 2212 2.093658 TCGGACTTTAGCTTGATCCCAC 60.094 50.000 0.00 0.00 0.00 4.61
2081 2213 2.644676 GGACTTTAGCTTGATCCCACC 58.355 52.381 0.00 0.00 0.00 4.61
2082 2214 2.644676 GACTTTAGCTTGATCCCACCC 58.355 52.381 0.00 0.00 0.00 4.61
2083 2215 1.285078 ACTTTAGCTTGATCCCACCCC 59.715 52.381 0.00 0.00 0.00 4.95
2084 2216 1.284785 CTTTAGCTTGATCCCACCCCA 59.715 52.381 0.00 0.00 0.00 4.96
2085 2217 1.377690 TTAGCTTGATCCCACCCCAA 58.622 50.000 0.00 0.00 0.00 4.12
2086 2218 1.377690 TAGCTTGATCCCACCCCAAA 58.622 50.000 0.00 0.00 0.00 3.28
2087 2219 0.486879 AGCTTGATCCCACCCCAAAA 59.513 50.000 0.00 0.00 0.00 2.44
2088 2220 1.132881 AGCTTGATCCCACCCCAAAAA 60.133 47.619 0.00 0.00 0.00 1.94
2089 2221 1.001974 GCTTGATCCCACCCCAAAAAC 59.998 52.381 0.00 0.00 0.00 2.43
2090 2222 1.623311 CTTGATCCCACCCCAAAAACC 59.377 52.381 0.00 0.00 0.00 3.27
2091 2223 0.863956 TGATCCCACCCCAAAAACCT 59.136 50.000 0.00 0.00 0.00 3.50
2092 2224 1.203125 TGATCCCACCCCAAAAACCTC 60.203 52.381 0.00 0.00 0.00 3.85
2093 2225 1.077169 GATCCCACCCCAAAAACCTCT 59.923 52.381 0.00 0.00 0.00 3.69
2094 2226 0.938192 TCCCACCCCAAAAACCTCTT 59.062 50.000 0.00 0.00 0.00 2.85
2095 2227 1.292546 TCCCACCCCAAAAACCTCTTT 59.707 47.619 0.00 0.00 0.00 2.52
2096 2228 1.691976 CCCACCCCAAAAACCTCTTTC 59.308 52.381 0.00 0.00 0.00 2.62
2097 2229 2.393646 CCACCCCAAAAACCTCTTTCA 58.606 47.619 0.00 0.00 0.00 2.69
2098 2230 2.102420 CCACCCCAAAAACCTCTTTCAC 59.898 50.000 0.00 0.00 0.00 3.18
2099 2231 2.028876 ACCCCAAAAACCTCTTTCACG 58.971 47.619 0.00 0.00 0.00 4.35
2100 2232 1.269569 CCCCAAAAACCTCTTTCACGC 60.270 52.381 0.00 0.00 0.00 5.34
2101 2233 1.599419 CCCAAAAACCTCTTTCACGCG 60.599 52.381 3.53 3.53 0.00 6.01
2102 2234 1.064952 CCAAAAACCTCTTTCACGCGT 59.935 47.619 5.58 5.58 0.00 6.01
2103 2235 2.372350 CAAAAACCTCTTTCACGCGTC 58.628 47.619 9.86 0.00 0.00 5.19
2104 2236 0.942252 AAAACCTCTTTCACGCGTCC 59.058 50.000 9.86 0.00 0.00 4.79
2105 2237 1.219522 AAACCTCTTTCACGCGTCCG 61.220 55.000 9.86 0.00 41.14 4.79
2106 2238 3.479269 CCTCTTTCACGCGTCCGC 61.479 66.667 9.86 0.68 38.22 5.54
2107 2239 2.430921 CTCTTTCACGCGTCCGCT 60.431 61.111 9.86 0.00 39.32 5.52
2108 2240 1.154093 CTCTTTCACGCGTCCGCTA 60.154 57.895 9.86 0.00 39.32 4.26
2109 2241 0.731514 CTCTTTCACGCGTCCGCTAA 60.732 55.000 9.86 0.00 39.32 3.09
2164 2833 6.584185 AAGGAACGTATAAACCAATGCTTT 57.416 33.333 0.00 0.00 0.00 3.51
2226 2895 6.718912 TCCACACCTATTCATTTGTCATTTGA 59.281 34.615 0.00 0.00 0.00 2.69
2227 2896 7.232330 TCCACACCTATTCATTTGTCATTTGAA 59.768 33.333 1.68 1.68 34.18 2.69
2293 2962 4.762289 GGAGATGTTTCCCATGTAGAGT 57.238 45.455 0.00 0.00 32.56 3.24
2294 2963 4.698575 GGAGATGTTTCCCATGTAGAGTC 58.301 47.826 0.00 0.00 32.56 3.36
2295 2964 4.443598 GGAGATGTTTCCCATGTAGAGTCC 60.444 50.000 0.00 0.00 32.56 3.85
2296 2965 4.366267 AGATGTTTCCCATGTAGAGTCCT 58.634 43.478 0.00 0.00 32.56 3.85
2297 2966 4.785376 AGATGTTTCCCATGTAGAGTCCTT 59.215 41.667 0.00 0.00 32.56 3.36
2298 2967 4.553330 TGTTTCCCATGTAGAGTCCTTC 57.447 45.455 0.00 0.00 0.00 3.46
2299 2968 3.056107 TGTTTCCCATGTAGAGTCCTTCG 60.056 47.826 0.00 0.00 0.00 3.79
2300 2969 2.526888 TCCCATGTAGAGTCCTTCGT 57.473 50.000 0.00 0.00 0.00 3.85
2301 2970 2.100197 TCCCATGTAGAGTCCTTCGTG 58.900 52.381 0.00 0.00 0.00 4.35
2302 2971 1.471676 CCCATGTAGAGTCCTTCGTGC 60.472 57.143 0.00 0.00 0.00 5.34
2303 2972 1.471676 CCATGTAGAGTCCTTCGTGCC 60.472 57.143 0.00 0.00 0.00 5.01
2304 2973 1.204704 CATGTAGAGTCCTTCGTGCCA 59.795 52.381 0.00 0.00 0.00 4.92
2305 2974 1.557099 TGTAGAGTCCTTCGTGCCAT 58.443 50.000 0.00 0.00 0.00 4.40
2306 2975 1.204704 TGTAGAGTCCTTCGTGCCATG 59.795 52.381 0.00 0.00 0.00 3.66
2307 2976 0.175760 TAGAGTCCTTCGTGCCATGC 59.824 55.000 0.00 0.00 0.00 4.06
2308 2977 1.375908 GAGTCCTTCGTGCCATGCA 60.376 57.895 0.00 0.00 35.60 3.96
2309 2978 0.745845 GAGTCCTTCGTGCCATGCAT 60.746 55.000 0.00 0.00 41.91 3.96
2310 2979 0.322816 AGTCCTTCGTGCCATGCATT 60.323 50.000 0.00 0.00 41.91 3.56
2311 2980 0.099436 GTCCTTCGTGCCATGCATTC 59.901 55.000 0.00 0.00 41.91 2.67
2312 2981 0.322366 TCCTTCGTGCCATGCATTCA 60.322 50.000 0.00 0.00 41.91 2.57
2313 2982 0.179156 CCTTCGTGCCATGCATTCAC 60.179 55.000 15.42 15.42 41.91 3.18
2314 2983 0.806868 CTTCGTGCCATGCATTCACT 59.193 50.000 20.32 0.00 41.91 3.41
2315 2984 0.804364 TTCGTGCCATGCATTCACTC 59.196 50.000 20.32 5.27 41.91 3.51
2316 2985 1.026182 TCGTGCCATGCATTCACTCC 61.026 55.000 20.32 2.49 41.91 3.85
2317 2986 1.430632 GTGCCATGCATTCACTCCG 59.569 57.895 17.26 0.00 41.91 4.63
2318 2987 1.026182 GTGCCATGCATTCACTCCGA 61.026 55.000 17.26 0.00 41.91 4.55
2319 2988 1.026182 TGCCATGCATTCACTCCGAC 61.026 55.000 0.00 0.00 31.71 4.79
2320 2989 2.009108 CCATGCATTCACTCCGACG 58.991 57.895 0.00 0.00 0.00 5.12
2321 2990 1.349627 CATGCATTCACTCCGACGC 59.650 57.895 0.00 0.00 0.00 5.19
2322 2991 1.079197 ATGCATTCACTCCGACGCA 60.079 52.632 0.00 0.00 36.86 5.24
2323 2992 1.086067 ATGCATTCACTCCGACGCAG 61.086 55.000 0.00 0.00 36.12 5.18
2324 2993 2.456119 GCATTCACTCCGACGCAGG 61.456 63.158 0.00 0.00 0.00 4.85
2325 2994 2.125512 ATTCACTCCGACGCAGGC 60.126 61.111 0.00 0.00 0.00 4.85
2326 2995 3.665675 ATTCACTCCGACGCAGGCC 62.666 63.158 0.00 0.00 0.00 5.19
2333 3002 4.379243 CGACGCAGGCCCAGTTCT 62.379 66.667 0.00 0.00 0.00 3.01
2334 3003 2.032681 GACGCAGGCCCAGTTCTT 59.967 61.111 0.00 0.00 0.00 2.52
2335 3004 1.600916 GACGCAGGCCCAGTTCTTT 60.601 57.895 0.00 0.00 0.00 2.52
2336 3005 1.152756 ACGCAGGCCCAGTTCTTTT 60.153 52.632 0.00 0.00 0.00 2.27
2337 3006 0.755327 ACGCAGGCCCAGTTCTTTTT 60.755 50.000 0.00 0.00 0.00 1.94
2338 3007 0.039165 CGCAGGCCCAGTTCTTTTTC 60.039 55.000 0.00 0.00 0.00 2.29
2339 3008 1.332195 GCAGGCCCAGTTCTTTTTCT 58.668 50.000 0.00 0.00 0.00 2.52
2340 3009 1.270826 GCAGGCCCAGTTCTTTTTCTC 59.729 52.381 0.00 0.00 0.00 2.87
2341 3010 1.889170 CAGGCCCAGTTCTTTTTCTCC 59.111 52.381 0.00 0.00 0.00 3.71
2342 3011 1.203063 AGGCCCAGTTCTTTTTCTCCC 60.203 52.381 0.00 0.00 0.00 4.30
2343 3012 1.480498 GGCCCAGTTCTTTTTCTCCCA 60.480 52.381 0.00 0.00 0.00 4.37
2344 3013 2.529632 GCCCAGTTCTTTTTCTCCCAT 58.470 47.619 0.00 0.00 0.00 4.00
2345 3014 3.563479 GGCCCAGTTCTTTTTCTCCCATA 60.563 47.826 0.00 0.00 0.00 2.74
2346 3015 4.086457 GCCCAGTTCTTTTTCTCCCATAA 58.914 43.478 0.00 0.00 0.00 1.90
2347 3016 4.711846 GCCCAGTTCTTTTTCTCCCATAAT 59.288 41.667 0.00 0.00 0.00 1.28
2348 3017 5.891551 GCCCAGTTCTTTTTCTCCCATAATA 59.108 40.000 0.00 0.00 0.00 0.98
2349 3018 6.551227 GCCCAGTTCTTTTTCTCCCATAATAT 59.449 38.462 0.00 0.00 0.00 1.28
2350 3019 7.255625 GCCCAGTTCTTTTTCTCCCATAATATC 60.256 40.741 0.00 0.00 0.00 1.63
2351 3020 7.041098 CCCAGTTCTTTTTCTCCCATAATATCG 60.041 40.741 0.00 0.00 0.00 2.92
2352 3021 7.715249 CCAGTTCTTTTTCTCCCATAATATCGA 59.285 37.037 0.00 0.00 0.00 3.59
2353 3022 8.552034 CAGTTCTTTTTCTCCCATAATATCGAC 58.448 37.037 0.00 0.00 0.00 4.20
2354 3023 8.487028 AGTTCTTTTTCTCCCATAATATCGACT 58.513 33.333 0.00 0.00 0.00 4.18
2355 3024 8.766151 GTTCTTTTTCTCCCATAATATCGACTC 58.234 37.037 0.00 0.00 0.00 3.36
2356 3025 8.251383 TCTTTTTCTCCCATAATATCGACTCT 57.749 34.615 0.00 0.00 0.00 3.24
2357 3026 8.361139 TCTTTTTCTCCCATAATATCGACTCTC 58.639 37.037 0.00 0.00 0.00 3.20
2358 3027 6.591750 TTTCTCCCATAATATCGACTCTCC 57.408 41.667 0.00 0.00 0.00 3.71
2359 3028 5.256806 TCTCCCATAATATCGACTCTCCA 57.743 43.478 0.00 0.00 0.00 3.86
2360 3029 5.010933 TCTCCCATAATATCGACTCTCCAC 58.989 45.833 0.00 0.00 0.00 4.02
2361 3030 4.087182 TCCCATAATATCGACTCTCCACC 58.913 47.826 0.00 0.00 0.00 4.61
2362 3031 3.195825 CCCATAATATCGACTCTCCACCC 59.804 52.174 0.00 0.00 0.00 4.61
2363 3032 3.832490 CCATAATATCGACTCTCCACCCA 59.168 47.826 0.00 0.00 0.00 4.51
2364 3033 4.081972 CCATAATATCGACTCTCCACCCAG 60.082 50.000 0.00 0.00 0.00 4.45
2365 3034 1.333177 ATATCGACTCTCCACCCAGC 58.667 55.000 0.00 0.00 0.00 4.85
2366 3035 0.259065 TATCGACTCTCCACCCAGCT 59.741 55.000 0.00 0.00 0.00 4.24
2367 3036 0.616111 ATCGACTCTCCACCCAGCTT 60.616 55.000 0.00 0.00 0.00 3.74
2368 3037 1.216710 CGACTCTCCACCCAGCTTC 59.783 63.158 0.00 0.00 0.00 3.86
2369 3038 1.254284 CGACTCTCCACCCAGCTTCT 61.254 60.000 0.00 0.00 0.00 2.85
2370 3039 0.534873 GACTCTCCACCCAGCTTCTC 59.465 60.000 0.00 0.00 0.00 2.87
2371 3040 0.116143 ACTCTCCACCCAGCTTCTCT 59.884 55.000 0.00 0.00 0.00 3.10
2372 3041 0.823460 CTCTCCACCCAGCTTCTCTC 59.177 60.000 0.00 0.00 0.00 3.20
2373 3042 0.115152 TCTCCACCCAGCTTCTCTCA 59.885 55.000 0.00 0.00 0.00 3.27
2374 3043 0.979665 CTCCACCCAGCTTCTCTCAA 59.020 55.000 0.00 0.00 0.00 3.02
2375 3044 1.349026 CTCCACCCAGCTTCTCTCAAA 59.651 52.381 0.00 0.00 0.00 2.69
2376 3045 1.774254 TCCACCCAGCTTCTCTCAAAA 59.226 47.619 0.00 0.00 0.00 2.44
2377 3046 2.376518 TCCACCCAGCTTCTCTCAAAAT 59.623 45.455 0.00 0.00 0.00 1.82
2378 3047 2.751806 CCACCCAGCTTCTCTCAAAATC 59.248 50.000 0.00 0.00 0.00 2.17
2379 3048 3.560882 CCACCCAGCTTCTCTCAAAATCT 60.561 47.826 0.00 0.00 0.00 2.40
2380 3049 4.077822 CACCCAGCTTCTCTCAAAATCTT 58.922 43.478 0.00 0.00 0.00 2.40
2381 3050 4.077822 ACCCAGCTTCTCTCAAAATCTTG 58.922 43.478 0.00 0.00 0.00 3.02
2382 3051 4.202503 ACCCAGCTTCTCTCAAAATCTTGA 60.203 41.667 0.00 0.00 39.30 3.02
2383 3052 4.763793 CCCAGCTTCTCTCAAAATCTTGAA 59.236 41.667 0.00 0.00 41.05 2.69
2384 3053 5.335504 CCCAGCTTCTCTCAAAATCTTGAAC 60.336 44.000 0.00 0.00 41.05 3.18
2385 3054 5.335504 CCAGCTTCTCTCAAAATCTTGAACC 60.336 44.000 0.00 0.00 41.05 3.62
2386 3055 4.764308 AGCTTCTCTCAAAATCTTGAACCC 59.236 41.667 0.00 0.00 41.05 4.11
2387 3056 4.520492 GCTTCTCTCAAAATCTTGAACCCA 59.480 41.667 0.00 0.00 41.05 4.51
2388 3057 5.184671 GCTTCTCTCAAAATCTTGAACCCAT 59.815 40.000 0.00 0.00 41.05 4.00
2389 3058 6.375455 GCTTCTCTCAAAATCTTGAACCCATA 59.625 38.462 0.00 0.00 41.05 2.74
2390 3059 7.067981 GCTTCTCTCAAAATCTTGAACCCATAT 59.932 37.037 0.00 0.00 41.05 1.78
2391 3060 9.618890 CTTCTCTCAAAATCTTGAACCCATATA 57.381 33.333 0.00 0.00 41.05 0.86
2427 3096 8.639761 TCCTAACTAGTTAAGGATATGAACAGC 58.360 37.037 20.78 0.00 0.00 4.40
2428 3097 8.643324 CCTAACTAGTTAAGGATATGAACAGCT 58.357 37.037 15.95 0.00 0.00 4.24
2431 3100 8.184304 ACTAGTTAAGGATATGAACAGCTAGG 57.816 38.462 0.00 0.00 0.00 3.02
2432 3101 8.005388 ACTAGTTAAGGATATGAACAGCTAGGA 58.995 37.037 0.00 0.00 0.00 2.94
2433 3102 7.863901 AGTTAAGGATATGAACAGCTAGGAT 57.136 36.000 0.00 0.00 0.00 3.24
2434 3103 8.268878 AGTTAAGGATATGAACAGCTAGGATT 57.731 34.615 0.00 0.00 0.00 3.01
2435 3104 8.153550 AGTTAAGGATATGAACAGCTAGGATTG 58.846 37.037 0.00 0.00 0.00 2.67
2436 3105 6.506538 AAGGATATGAACAGCTAGGATTGT 57.493 37.500 0.00 0.00 0.00 2.71
2437 3106 7.618019 AAGGATATGAACAGCTAGGATTGTA 57.382 36.000 0.00 0.00 0.00 2.41
2438 3107 7.618019 AGGATATGAACAGCTAGGATTGTAA 57.382 36.000 0.00 0.00 0.00 2.41
2439 3108 8.034313 AGGATATGAACAGCTAGGATTGTAAA 57.966 34.615 0.00 0.00 0.00 2.01
2440 3109 8.494433 AGGATATGAACAGCTAGGATTGTAAAA 58.506 33.333 0.00 0.00 0.00 1.52
2441 3110 9.120538 GGATATGAACAGCTAGGATTGTAAAAA 57.879 33.333 0.00 0.00 0.00 1.94
2474 3143 2.903798 GATTCTGAGAGAAGCTGGGTG 58.096 52.381 0.00 0.00 37.62 4.61
2475 3144 0.979665 TTCTGAGAGAAGCTGGGTGG 59.020 55.000 0.00 0.00 29.50 4.61
2476 3145 0.115152 TCTGAGAGAAGCTGGGTGGA 59.885 55.000 0.00 0.00 0.00 4.02
2477 3146 0.536260 CTGAGAGAAGCTGGGTGGAG 59.464 60.000 0.00 0.00 0.00 3.86
2478 3147 0.906756 TGAGAGAAGCTGGGTGGAGG 60.907 60.000 0.00 0.00 0.00 4.30
2479 3148 1.614824 AGAGAAGCTGGGTGGAGGG 60.615 63.158 0.00 0.00 0.00 4.30
2480 3149 1.920835 GAGAAGCTGGGTGGAGGGT 60.921 63.158 0.00 0.00 0.00 4.34
2481 3150 1.904990 GAGAAGCTGGGTGGAGGGTC 61.905 65.000 0.00 0.00 0.00 4.46
2482 3151 3.316573 GAAGCTGGGTGGAGGGTCG 62.317 68.421 0.00 0.00 0.00 4.79
2483 3152 3.846405 AAGCTGGGTGGAGGGTCGA 62.846 63.158 0.00 0.00 0.00 4.20
2484 3153 3.083997 GCTGGGTGGAGGGTCGAT 61.084 66.667 0.00 0.00 0.00 3.59
2485 3154 2.670148 GCTGGGTGGAGGGTCGATT 61.670 63.158 0.00 0.00 0.00 3.34
2486 3155 1.522569 CTGGGTGGAGGGTCGATTC 59.477 63.158 0.00 0.00 0.00 2.52
2487 3156 0.978146 CTGGGTGGAGGGTCGATTCT 60.978 60.000 0.00 0.00 0.00 2.40
2488 3157 0.976073 TGGGTGGAGGGTCGATTCTC 60.976 60.000 8.82 8.82 0.00 2.87
2489 3158 0.976073 GGGTGGAGGGTCGATTCTCA 60.976 60.000 16.28 4.19 0.00 3.27
2490 3159 0.902531 GGTGGAGGGTCGATTCTCAA 59.097 55.000 16.28 5.83 0.00 3.02
2491 3160 1.134670 GGTGGAGGGTCGATTCTCAAG 60.135 57.143 16.28 0.00 0.00 3.02
2492 3161 1.825474 GTGGAGGGTCGATTCTCAAGA 59.175 52.381 16.28 1.76 0.00 3.02
2493 3162 2.432510 GTGGAGGGTCGATTCTCAAGAT 59.567 50.000 16.28 0.00 0.00 2.40
2494 3163 3.107601 TGGAGGGTCGATTCTCAAGATT 58.892 45.455 16.28 0.00 0.00 2.40
2495 3164 3.133003 TGGAGGGTCGATTCTCAAGATTC 59.867 47.826 16.28 2.99 0.00 2.52
2496 3165 3.386402 GGAGGGTCGATTCTCAAGATTCT 59.614 47.826 16.28 0.00 0.00 2.40
2497 3166 4.141824 GGAGGGTCGATTCTCAAGATTCTT 60.142 45.833 16.28 0.00 0.00 2.52
2498 3167 4.764172 AGGGTCGATTCTCAAGATTCTTG 58.236 43.478 18.49 18.49 0.00 3.02
2499 3168 3.873952 GGGTCGATTCTCAAGATTCTTGG 59.126 47.826 22.86 14.89 0.00 3.61
2500 3169 4.383118 GGGTCGATTCTCAAGATTCTTGGA 60.383 45.833 22.86 16.60 0.00 3.53
2501 3170 4.808364 GGTCGATTCTCAAGATTCTTGGAG 59.192 45.833 22.86 18.15 0.00 3.86
2502 3171 5.394663 GGTCGATTCTCAAGATTCTTGGAGA 60.395 44.000 22.86 19.69 34.77 3.71
2503 3172 6.102663 GTCGATTCTCAAGATTCTTGGAGAA 58.897 40.000 25.95 25.95 46.74 2.87
2511 3180 2.806945 ATTCTTGGAGAATCGCCCAA 57.193 45.000 0.00 5.38 40.75 4.12
2512 3181 2.577606 TTCTTGGAGAATCGCCCAAA 57.422 45.000 0.00 0.00 41.41 3.28
2513 3182 2.577606 TCTTGGAGAATCGCCCAAAA 57.422 45.000 0.00 0.00 41.41 2.44
2514 3183 2.436417 TCTTGGAGAATCGCCCAAAAG 58.564 47.619 0.00 0.00 41.41 2.27
2515 3184 2.039746 TCTTGGAGAATCGCCCAAAAGA 59.960 45.455 0.00 0.51 41.41 2.52
2516 3185 2.577606 TGGAGAATCGCCCAAAAGAA 57.422 45.000 0.00 0.00 34.37 2.52
2517 3186 2.159382 TGGAGAATCGCCCAAAAGAAC 58.841 47.619 0.00 0.00 34.37 3.01
2518 3187 2.224769 TGGAGAATCGCCCAAAAGAACT 60.225 45.455 0.00 0.00 34.37 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 4.440112 CGACTCTATACACCTGATGCACAA 60.440 45.833 0.00 0.00 0.00 3.33
170 172 7.798596 TGAAAATTTGTATTGGTTGCATGTT 57.201 28.000 0.00 0.00 0.00 2.71
193 195 3.599568 CGTTGCCACGTGCTTTTG 58.400 55.556 10.91 0.00 41.84 2.44
256 258 4.638421 CAGGTATCAAATAACCTCGCCAAA 59.362 41.667 0.00 0.00 44.43 3.28
257 259 4.196193 CAGGTATCAAATAACCTCGCCAA 58.804 43.478 0.00 0.00 44.43 4.52
258 260 3.433031 CCAGGTATCAAATAACCTCGCCA 60.433 47.826 0.00 0.00 44.43 5.69
259 261 3.139077 CCAGGTATCAAATAACCTCGCC 58.861 50.000 0.00 0.00 44.43 5.54
260 262 4.067972 TCCAGGTATCAAATAACCTCGC 57.932 45.455 0.00 0.00 44.43 5.03
261 263 4.506654 CGTTCCAGGTATCAAATAACCTCG 59.493 45.833 0.00 0.00 44.43 4.63
271 273 1.195442 TGGTGGCGTTCCAGGTATCA 61.195 55.000 0.00 0.00 44.48 2.15
274 276 1.600107 GATGGTGGCGTTCCAGGTA 59.400 57.895 2.72 0.00 44.48 3.08
276 278 2.438434 GGATGGTGGCGTTCCAGG 60.438 66.667 2.72 0.00 44.48 4.45
277 279 1.450312 GAGGATGGTGGCGTTCCAG 60.450 63.158 2.72 0.00 44.48 3.86
281 283 0.110486 AAAGTGAGGATGGTGGCGTT 59.890 50.000 0.00 0.00 0.00 4.84
306 308 4.196971 GTCGCCATAATTTTCCTACAGGT 58.803 43.478 0.00 0.00 36.34 4.00
312 314 1.286553 TGGGGTCGCCATAATTTTCCT 59.713 47.619 4.12 0.00 0.00 3.36
398 400 1.299926 CCGCGTAGGGATTTCCTCG 60.300 63.158 4.92 0.00 44.06 4.63
541 545 0.654472 CGCTGTCGAGTTGTGCAAAC 60.654 55.000 0.00 0.00 38.10 2.93
780 784 0.802494 GCCCACATGTAAACTCGGTG 59.198 55.000 0.00 0.00 0.00 4.94
784 788 0.322187 ACCGGCCCACATGTAAACTC 60.322 55.000 0.00 0.00 0.00 3.01
802 806 2.890474 CCCACGGTCTGCGCATAC 60.890 66.667 12.24 15.03 0.00 2.39
842 846 4.748102 TCTTGGCCGAAATATCACGTAATC 59.252 41.667 0.00 0.00 0.00 1.75
869 873 0.801067 GGCAGAACTACGCGTAGGTG 60.801 60.000 40.30 33.36 37.49 4.00
952 956 1.003118 TCAATTCCTTCCCTGACACGG 59.997 52.381 0.00 0.00 0.00 4.94
1509 1515 1.320507 CCTTACCGACCTAGCTCCTC 58.679 60.000 0.00 0.00 0.00 3.71
1753 1885 6.636850 ACGAGTTCTAATTCATTGCAAACAAC 59.363 34.615 1.71 0.00 38.99 3.32
1814 1946 7.765360 ATTCTGCATGAGTTTCAAACAGAAAAA 59.235 29.630 20.92 8.18 46.14 1.94
1815 1947 7.267128 ATTCTGCATGAGTTTCAAACAGAAAA 58.733 30.769 20.92 8.65 46.14 2.29
1885 2017 2.711542 AGATTCAACATCGTCCCCAAC 58.288 47.619 0.00 0.00 0.00 3.77
1913 2045 7.341445 AGCTGGTAATTTGAGTACAACAAAA 57.659 32.000 17.46 4.24 39.95 2.44
1935 2067 1.953559 TCGTTGATGATGCCCTAAGC 58.046 50.000 0.00 0.00 44.14 3.09
1936 2068 2.810274 CCATCGTTGATGATGCCCTAAG 59.190 50.000 8.32 0.00 43.52 2.18
1937 2069 2.437651 TCCATCGTTGATGATGCCCTAA 59.562 45.455 8.32 0.00 43.52 2.69
1938 2070 2.046292 TCCATCGTTGATGATGCCCTA 58.954 47.619 8.32 0.00 43.52 3.53
1939 2071 0.839277 TCCATCGTTGATGATGCCCT 59.161 50.000 8.32 0.00 43.52 5.19
1940 2072 1.808945 GATCCATCGTTGATGATGCCC 59.191 52.381 8.32 0.00 43.52 5.36
1941 2073 2.497138 TGATCCATCGTTGATGATGCC 58.503 47.619 8.32 1.35 43.52 4.40
1942 2074 4.761235 AATGATCCATCGTTGATGATGC 57.239 40.909 8.32 0.00 43.52 3.91
1943 2075 9.124807 CATTTTAATGATCCATCGTTGATGATG 57.875 33.333 8.32 6.27 39.16 3.07
1944 2076 9.070179 TCATTTTAATGATCCATCGTTGATGAT 57.930 29.630 8.32 0.90 39.94 2.45
1945 2077 8.344831 GTCATTTTAATGATCCATCGTTGATGA 58.655 33.333 8.32 7.99 46.17 2.92
1946 2078 7.592533 GGTCATTTTAATGATCCATCGTTGATG 59.407 37.037 8.28 0.00 46.17 3.07
1947 2079 7.285172 TGGTCATTTTAATGATCCATCGTTGAT 59.715 33.333 11.99 0.00 46.17 2.57
1948 2080 6.601217 TGGTCATTTTAATGATCCATCGTTGA 59.399 34.615 11.99 0.00 46.17 3.18
1949 2081 6.794374 TGGTCATTTTAATGATCCATCGTTG 58.206 36.000 11.99 0.00 46.17 4.10
1950 2082 6.460123 GCTGGTCATTTTAATGATCCATCGTT 60.460 38.462 18.46 0.00 46.17 3.85
1951 2083 5.009010 GCTGGTCATTTTAATGATCCATCGT 59.991 40.000 18.46 0.00 46.17 3.73
1952 2084 5.240183 AGCTGGTCATTTTAATGATCCATCG 59.760 40.000 18.46 12.94 46.17 3.84
1953 2085 6.645790 AGCTGGTCATTTTAATGATCCATC 57.354 37.500 18.46 16.05 46.17 3.51
1954 2086 7.232127 CCTAAGCTGGTCATTTTAATGATCCAT 59.768 37.037 18.46 11.63 46.17 3.41
1955 2087 6.547141 CCTAAGCTGGTCATTTTAATGATCCA 59.453 38.462 11.99 15.39 46.17 3.41
1956 2088 6.015940 CCCTAAGCTGGTCATTTTAATGATCC 60.016 42.308 11.99 12.53 46.17 3.36
1957 2089 6.515696 GCCCTAAGCTGGTCATTTTAATGATC 60.516 42.308 8.28 8.37 44.84 2.92
1958 2090 5.302823 GCCCTAAGCTGGTCATTTTAATGAT 59.697 40.000 8.28 0.00 42.09 2.45
1959 2091 4.644685 GCCCTAAGCTGGTCATTTTAATGA 59.355 41.667 1.12 1.12 39.78 2.57
1960 2092 4.402155 TGCCCTAAGCTGGTCATTTTAATG 59.598 41.667 0.00 0.00 44.23 1.90
1961 2093 4.609301 TGCCCTAAGCTGGTCATTTTAAT 58.391 39.130 0.00 0.00 44.23 1.40
1962 2094 4.040936 TGCCCTAAGCTGGTCATTTTAA 57.959 40.909 0.00 0.00 44.23 1.52
1963 2095 3.730215 TGCCCTAAGCTGGTCATTTTA 57.270 42.857 0.00 0.00 44.23 1.52
1964 2096 2.603075 TGCCCTAAGCTGGTCATTTT 57.397 45.000 0.00 0.00 44.23 1.82
1965 2097 2.025037 TGATGCCCTAAGCTGGTCATTT 60.025 45.455 0.00 0.00 44.23 2.32
1966 2098 1.565759 TGATGCCCTAAGCTGGTCATT 59.434 47.619 0.00 0.00 44.23 2.57
1967 2099 1.216064 TGATGCCCTAAGCTGGTCAT 58.784 50.000 0.00 0.00 44.23 3.06
1968 2100 1.141657 GATGATGCCCTAAGCTGGTCA 59.858 52.381 0.00 0.00 44.23 4.02
1969 2101 1.141657 TGATGATGCCCTAAGCTGGTC 59.858 52.381 0.00 0.00 44.23 4.02
1970 2102 1.216064 TGATGATGCCCTAAGCTGGT 58.784 50.000 0.00 0.00 44.23 4.00
1971 2103 1.952296 GTTGATGATGCCCTAAGCTGG 59.048 52.381 0.00 0.00 44.23 4.85
1972 2104 1.600957 CGTTGATGATGCCCTAAGCTG 59.399 52.381 0.00 0.00 44.23 4.24
1973 2105 1.475751 CCGTTGATGATGCCCTAAGCT 60.476 52.381 0.00 0.00 44.23 3.74
1974 2106 0.947244 CCGTTGATGATGCCCTAAGC 59.053 55.000 0.00 0.00 44.14 3.09
1975 2107 2.620251 TCCGTTGATGATGCCCTAAG 57.380 50.000 0.00 0.00 0.00 2.18
1976 2108 3.358111 TTTCCGTTGATGATGCCCTAA 57.642 42.857 0.00 0.00 0.00 2.69
1977 2109 3.476552 GATTTCCGTTGATGATGCCCTA 58.523 45.455 0.00 0.00 0.00 3.53
1978 2110 2.301346 GATTTCCGTTGATGATGCCCT 58.699 47.619 0.00 0.00 0.00 5.19
1979 2111 1.338020 GGATTTCCGTTGATGATGCCC 59.662 52.381 0.00 0.00 0.00 5.36
1980 2112 2.301346 AGGATTTCCGTTGATGATGCC 58.699 47.619 0.00 0.00 42.08 4.40
1981 2113 3.876914 TGTAGGATTTCCGTTGATGATGC 59.123 43.478 0.00 0.00 42.08 3.91
1982 2114 4.024556 GCTGTAGGATTTCCGTTGATGATG 60.025 45.833 0.00 0.00 42.08 3.07
1983 2115 4.130118 GCTGTAGGATTTCCGTTGATGAT 58.870 43.478 0.00 0.00 42.08 2.45
1984 2116 3.531538 GCTGTAGGATTTCCGTTGATGA 58.468 45.455 0.00 0.00 42.08 2.92
1985 2117 2.614057 GGCTGTAGGATTTCCGTTGATG 59.386 50.000 0.00 0.00 42.08 3.07
1986 2118 2.421529 GGGCTGTAGGATTTCCGTTGAT 60.422 50.000 0.00 0.00 42.08 2.57
1987 2119 1.065709 GGGCTGTAGGATTTCCGTTGA 60.066 52.381 0.00 0.00 42.08 3.18
1988 2120 1.379527 GGGCTGTAGGATTTCCGTTG 58.620 55.000 0.00 0.00 42.08 4.10
1989 2121 0.107848 CGGGCTGTAGGATTTCCGTT 60.108 55.000 0.00 0.00 42.08 4.44
1990 2122 1.520666 CGGGCTGTAGGATTTCCGT 59.479 57.895 0.00 0.00 42.08 4.69
1991 2123 1.227556 CCGGGCTGTAGGATTTCCG 60.228 63.158 0.00 0.00 42.08 4.30
1992 2124 0.179054 GACCGGGCTGTAGGATTTCC 60.179 60.000 6.32 0.00 0.00 3.13
1993 2125 0.539986 TGACCGGGCTGTAGGATTTC 59.460 55.000 9.82 0.00 0.00 2.17
1994 2126 0.252197 GTGACCGGGCTGTAGGATTT 59.748 55.000 9.82 0.00 0.00 2.17
1995 2127 0.907704 TGTGACCGGGCTGTAGGATT 60.908 55.000 9.82 0.00 0.00 3.01
1996 2128 0.691078 ATGTGACCGGGCTGTAGGAT 60.691 55.000 9.82 0.00 0.00 3.24
1997 2129 0.032912 TATGTGACCGGGCTGTAGGA 60.033 55.000 9.82 0.00 0.00 2.94
1998 2130 1.000955 GATATGTGACCGGGCTGTAGG 59.999 57.143 9.82 0.00 0.00 3.18
1999 2131 1.335964 CGATATGTGACCGGGCTGTAG 60.336 57.143 9.82 0.00 0.00 2.74
2000 2132 0.671796 CGATATGTGACCGGGCTGTA 59.328 55.000 9.82 0.00 0.00 2.74
2001 2133 1.441729 CGATATGTGACCGGGCTGT 59.558 57.895 9.82 0.00 0.00 4.40
2002 2134 1.956170 GCGATATGTGACCGGGCTG 60.956 63.158 9.82 0.00 0.00 4.85
2003 2135 2.421739 GCGATATGTGACCGGGCT 59.578 61.111 9.82 0.00 0.00 5.19
2004 2136 2.665185 GGCGATATGTGACCGGGC 60.665 66.667 6.32 1.57 0.00 6.13
2005 2137 1.594293 GTGGCGATATGTGACCGGG 60.594 63.158 6.32 0.00 0.00 5.73
2006 2138 0.461163 TTGTGGCGATATGTGACCGG 60.461 55.000 0.00 0.00 0.00 5.28
2007 2139 1.364721 TTTGTGGCGATATGTGACCG 58.635 50.000 0.00 0.00 0.00 4.79
2008 2140 3.376859 TCAATTTGTGGCGATATGTGACC 59.623 43.478 0.00 0.00 0.00 4.02
2009 2141 4.496341 CCTCAATTTGTGGCGATATGTGAC 60.496 45.833 4.66 0.00 0.00 3.67
2010 2142 3.627123 CCTCAATTTGTGGCGATATGTGA 59.373 43.478 4.66 0.00 0.00 3.58
2011 2143 3.243168 CCCTCAATTTGTGGCGATATGTG 60.243 47.826 11.25 0.00 30.04 3.21
2012 2144 2.951642 CCCTCAATTTGTGGCGATATGT 59.048 45.455 11.25 0.00 30.04 2.29
2013 2145 3.213506 TCCCTCAATTTGTGGCGATATG 58.786 45.455 11.25 0.00 30.04 1.78
2014 2146 3.576078 TCCCTCAATTTGTGGCGATAT 57.424 42.857 11.25 0.00 30.04 1.63
2015 2147 3.278574 CTTCCCTCAATTTGTGGCGATA 58.721 45.455 11.25 0.00 30.04 2.92
2016 2148 2.094675 CTTCCCTCAATTTGTGGCGAT 58.905 47.619 11.25 0.00 30.04 4.58
2017 2149 1.202879 ACTTCCCTCAATTTGTGGCGA 60.203 47.619 11.25 7.88 30.04 5.54
2018 2150 1.247567 ACTTCCCTCAATTTGTGGCG 58.752 50.000 11.25 5.99 30.04 5.69
2019 2151 2.627699 TCAACTTCCCTCAATTTGTGGC 59.372 45.455 11.25 0.00 30.04 5.01
2020 2152 3.891366 ACTCAACTTCCCTCAATTTGTGG 59.109 43.478 9.99 9.99 0.00 4.17
2021 2153 4.022849 GGACTCAACTTCCCTCAATTTGTG 60.023 45.833 0.00 0.00 0.00 3.33
2022 2154 4.145052 GGACTCAACTTCCCTCAATTTGT 58.855 43.478 0.00 0.00 0.00 2.83
2023 2155 3.189287 CGGACTCAACTTCCCTCAATTTG 59.811 47.826 0.00 0.00 0.00 2.32
2024 2156 3.412386 CGGACTCAACTTCCCTCAATTT 58.588 45.455 0.00 0.00 0.00 1.82
2025 2157 2.290323 CCGGACTCAACTTCCCTCAATT 60.290 50.000 0.00 0.00 0.00 2.32
2026 2158 1.279271 CCGGACTCAACTTCCCTCAAT 59.721 52.381 0.00 0.00 0.00 2.57
2027 2159 0.685097 CCGGACTCAACTTCCCTCAA 59.315 55.000 0.00 0.00 0.00 3.02
2028 2160 0.178944 TCCGGACTCAACTTCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
2029 2161 0.246910 GTCCGGACTCAACTTCCCTC 59.753 60.000 27.64 0.00 0.00 4.30
2030 2162 1.533469 CGTCCGGACTCAACTTCCCT 61.533 60.000 30.92 0.00 0.00 4.20
2031 2163 1.080025 CGTCCGGACTCAACTTCCC 60.080 63.158 30.92 1.97 0.00 3.97
2032 2164 0.388263 GACGTCCGGACTCAACTTCC 60.388 60.000 30.92 2.76 0.00 3.46
2033 2165 0.388263 GGACGTCCGGACTCAACTTC 60.388 60.000 30.92 16.36 0.00 3.01
2034 2166 1.664306 GGACGTCCGGACTCAACTT 59.336 57.895 30.92 9.00 0.00 2.66
2035 2167 3.363351 GGACGTCCGGACTCAACT 58.637 61.111 30.92 8.98 0.00 3.16
2052 2184 0.460284 AGCTAAAGTCCGACATGGCG 60.460 55.000 15.88 15.88 37.80 5.69
2053 2185 1.398390 CAAGCTAAAGTCCGACATGGC 59.602 52.381 0.40 3.16 37.80 4.40
2054 2186 2.972625 TCAAGCTAAAGTCCGACATGG 58.027 47.619 0.40 0.00 40.09 3.66
2055 2187 3.557595 GGATCAAGCTAAAGTCCGACATG 59.442 47.826 0.40 0.00 0.00 3.21
2056 2188 3.432326 GGGATCAAGCTAAAGTCCGACAT 60.432 47.826 0.40 0.00 0.00 3.06
2057 2189 2.093658 GGGATCAAGCTAAAGTCCGACA 60.094 50.000 0.40 0.00 0.00 4.35
2058 2190 2.093658 TGGGATCAAGCTAAAGTCCGAC 60.094 50.000 0.00 0.00 0.00 4.79
2059 2191 2.093658 GTGGGATCAAGCTAAAGTCCGA 60.094 50.000 0.00 0.00 0.00 4.55
2060 2192 2.280628 GTGGGATCAAGCTAAAGTCCG 58.719 52.381 0.00 0.00 0.00 4.79
2061 2193 2.644676 GGTGGGATCAAGCTAAAGTCC 58.355 52.381 0.00 0.00 0.00 3.85
2062 2194 2.644676 GGGTGGGATCAAGCTAAAGTC 58.355 52.381 0.00 0.00 0.00 3.01
2063 2195 1.285078 GGGGTGGGATCAAGCTAAAGT 59.715 52.381 0.00 0.00 0.00 2.66
2064 2196 1.284785 TGGGGTGGGATCAAGCTAAAG 59.715 52.381 0.00 0.00 0.00 1.85
2065 2197 1.377690 TGGGGTGGGATCAAGCTAAA 58.622 50.000 0.00 0.00 0.00 1.85
2066 2198 1.377690 TTGGGGTGGGATCAAGCTAA 58.622 50.000 0.00 0.00 0.00 3.09
2067 2199 1.377690 TTTGGGGTGGGATCAAGCTA 58.622 50.000 0.00 0.00 0.00 3.32
2068 2200 0.486879 TTTTGGGGTGGGATCAAGCT 59.513 50.000 0.00 0.00 0.00 3.74
2069 2201 1.001974 GTTTTTGGGGTGGGATCAAGC 59.998 52.381 0.00 0.00 0.00 4.01
2070 2202 1.623311 GGTTTTTGGGGTGGGATCAAG 59.377 52.381 0.00 0.00 0.00 3.02
2071 2203 1.221781 AGGTTTTTGGGGTGGGATCAA 59.778 47.619 0.00 0.00 0.00 2.57
2072 2204 0.863956 AGGTTTTTGGGGTGGGATCA 59.136 50.000 0.00 0.00 0.00 2.92
2073 2205 1.077169 AGAGGTTTTTGGGGTGGGATC 59.923 52.381 0.00 0.00 0.00 3.36
2074 2206 1.167033 AGAGGTTTTTGGGGTGGGAT 58.833 50.000 0.00 0.00 0.00 3.85
2075 2207 0.938192 AAGAGGTTTTTGGGGTGGGA 59.062 50.000 0.00 0.00 0.00 4.37
2076 2208 1.691976 GAAAGAGGTTTTTGGGGTGGG 59.308 52.381 0.00 0.00 0.00 4.61
2077 2209 2.102420 GTGAAAGAGGTTTTTGGGGTGG 59.898 50.000 0.00 0.00 0.00 4.61
2078 2210 2.223711 CGTGAAAGAGGTTTTTGGGGTG 60.224 50.000 0.00 0.00 0.00 4.61
2079 2211 2.028876 CGTGAAAGAGGTTTTTGGGGT 58.971 47.619 0.00 0.00 0.00 4.95
2080 2212 1.269569 GCGTGAAAGAGGTTTTTGGGG 60.270 52.381 0.00 0.00 0.00 4.96
2081 2213 1.599419 CGCGTGAAAGAGGTTTTTGGG 60.599 52.381 0.00 0.00 0.00 4.12
2082 2214 1.064952 ACGCGTGAAAGAGGTTTTTGG 59.935 47.619 12.93 0.00 0.00 3.28
2083 2215 2.372350 GACGCGTGAAAGAGGTTTTTG 58.628 47.619 20.70 0.00 0.00 2.44
2084 2216 1.332686 GGACGCGTGAAAGAGGTTTTT 59.667 47.619 20.70 0.00 0.00 1.94
2085 2217 0.942252 GGACGCGTGAAAGAGGTTTT 59.058 50.000 20.70 0.00 0.00 2.43
2086 2218 1.219522 CGGACGCGTGAAAGAGGTTT 61.220 55.000 20.70 0.00 0.00 3.27
2087 2219 1.663702 CGGACGCGTGAAAGAGGTT 60.664 57.895 20.70 0.00 0.00 3.50
2088 2220 2.049433 CGGACGCGTGAAAGAGGT 60.049 61.111 20.70 0.00 0.00 3.85
2089 2221 3.479269 GCGGACGCGTGAAAGAGG 61.479 66.667 20.70 0.00 0.00 3.69
2249 2918 6.040842 TCCCATCCTTTCTTTGACTCTTTTTG 59.959 38.462 0.00 0.00 0.00 2.44
2289 2958 1.078848 GCATGGCACGAAGGACTCT 60.079 57.895 0.00 0.00 0.00 3.24
2290 2959 0.745845 ATGCATGGCACGAAGGACTC 60.746 55.000 0.00 0.00 43.04 3.36
2291 2960 0.322816 AATGCATGGCACGAAGGACT 60.323 50.000 0.00 0.00 43.04 3.85
2292 2961 0.099436 GAATGCATGGCACGAAGGAC 59.901 55.000 0.00 0.00 43.04 3.85
2293 2962 0.322366 TGAATGCATGGCACGAAGGA 60.322 50.000 0.00 0.00 43.04 3.36
2294 2963 0.179156 GTGAATGCATGGCACGAAGG 60.179 55.000 14.77 0.00 43.04 3.46
2295 2964 0.806868 AGTGAATGCATGGCACGAAG 59.193 50.000 20.68 0.00 43.04 3.79
2296 2965 0.804364 GAGTGAATGCATGGCACGAA 59.196 50.000 20.68 0.00 43.04 3.85
2297 2966 1.026182 GGAGTGAATGCATGGCACGA 61.026 55.000 20.68 0.00 43.04 4.35
2298 2967 1.430632 GGAGTGAATGCATGGCACG 59.569 57.895 20.68 0.00 43.04 5.34
2299 2968 1.026182 TCGGAGTGAATGCATGGCAC 61.026 55.000 19.80 19.80 43.04 5.01
2300 2969 1.026182 GTCGGAGTGAATGCATGGCA 61.026 55.000 0.00 0.00 44.86 4.92
2301 2970 1.723870 GTCGGAGTGAATGCATGGC 59.276 57.895 0.00 0.00 0.00 4.40
2302 2971 2.009108 CGTCGGAGTGAATGCATGG 58.991 57.895 0.00 0.00 0.00 3.66
2303 2972 1.349627 GCGTCGGAGTGAATGCATG 59.650 57.895 0.00 0.00 32.11 4.06
2304 2973 1.079197 TGCGTCGGAGTGAATGCAT 60.079 52.632 0.00 0.00 35.86 3.96
2305 2974 1.737735 CTGCGTCGGAGTGAATGCA 60.738 57.895 5.47 0.00 37.76 3.96
2306 2975 2.456119 CCTGCGTCGGAGTGAATGC 61.456 63.158 13.02 0.00 0.00 3.56
2307 2976 2.456119 GCCTGCGTCGGAGTGAATG 61.456 63.158 13.02 0.00 0.00 2.67
2308 2977 2.125512 GCCTGCGTCGGAGTGAAT 60.126 61.111 13.02 0.00 0.00 2.57
2309 2978 4.373116 GGCCTGCGTCGGAGTGAA 62.373 66.667 13.02 0.00 0.00 3.18
2316 2985 3.883744 AAGAACTGGGCCTGCGTCG 62.884 63.158 10.71 0.00 0.00 5.12
2317 2986 1.172812 AAAAGAACTGGGCCTGCGTC 61.173 55.000 10.71 8.34 0.00 5.19
2318 2987 0.755327 AAAAAGAACTGGGCCTGCGT 60.755 50.000 10.71 0.00 0.00 5.24
2319 2988 0.039165 GAAAAAGAACTGGGCCTGCG 60.039 55.000 10.71 0.00 0.00 5.18
2320 2989 1.270826 GAGAAAAAGAACTGGGCCTGC 59.729 52.381 10.71 0.00 0.00 4.85
2321 2990 1.889170 GGAGAAAAAGAACTGGGCCTG 59.111 52.381 9.11 9.11 0.00 4.85
2322 2991 1.203063 GGGAGAAAAAGAACTGGGCCT 60.203 52.381 4.53 0.00 0.00 5.19
2323 2992 1.257743 GGGAGAAAAAGAACTGGGCC 58.742 55.000 0.00 0.00 0.00 5.80
2324 2993 1.995376 TGGGAGAAAAAGAACTGGGC 58.005 50.000 0.00 0.00 0.00 5.36
2325 2994 7.041098 CGATATTATGGGAGAAAAAGAACTGGG 60.041 40.741 0.00 0.00 0.00 4.45
2326 2995 7.715249 TCGATATTATGGGAGAAAAAGAACTGG 59.285 37.037 0.00 0.00 0.00 4.00
2327 2996 8.552034 GTCGATATTATGGGAGAAAAAGAACTG 58.448 37.037 0.00 0.00 0.00 3.16
2328 2997 8.487028 AGTCGATATTATGGGAGAAAAAGAACT 58.513 33.333 0.00 0.00 0.00 3.01
2329 2998 8.664211 AGTCGATATTATGGGAGAAAAAGAAC 57.336 34.615 0.00 0.00 0.00 3.01
2330 2999 8.705594 AGAGTCGATATTATGGGAGAAAAAGAA 58.294 33.333 0.00 0.00 0.00 2.52
2331 3000 8.251383 AGAGTCGATATTATGGGAGAAAAAGA 57.749 34.615 0.00 0.00 0.00 2.52
2332 3001 7.600752 GGAGAGTCGATATTATGGGAGAAAAAG 59.399 40.741 0.00 0.00 0.00 2.27
2333 3002 7.070696 TGGAGAGTCGATATTATGGGAGAAAAA 59.929 37.037 0.00 0.00 0.00 1.94
2334 3003 6.553476 TGGAGAGTCGATATTATGGGAGAAAA 59.447 38.462 0.00 0.00 0.00 2.29
2335 3004 6.015350 GTGGAGAGTCGATATTATGGGAGAAA 60.015 42.308 0.00 0.00 0.00 2.52
2336 3005 5.477291 GTGGAGAGTCGATATTATGGGAGAA 59.523 44.000 0.00 0.00 0.00 2.87
2337 3006 5.010933 GTGGAGAGTCGATATTATGGGAGA 58.989 45.833 0.00 0.00 0.00 3.71
2338 3007 4.158764 GGTGGAGAGTCGATATTATGGGAG 59.841 50.000 0.00 0.00 0.00 4.30
2339 3008 4.087182 GGTGGAGAGTCGATATTATGGGA 58.913 47.826 0.00 0.00 0.00 4.37
2340 3009 3.195825 GGGTGGAGAGTCGATATTATGGG 59.804 52.174 0.00 0.00 0.00 4.00
2341 3010 3.832490 TGGGTGGAGAGTCGATATTATGG 59.168 47.826 0.00 0.00 0.00 2.74
2342 3011 4.619394 GCTGGGTGGAGAGTCGATATTATG 60.619 50.000 0.00 0.00 0.00 1.90
2343 3012 3.511934 GCTGGGTGGAGAGTCGATATTAT 59.488 47.826 0.00 0.00 0.00 1.28
2344 3013 2.891580 GCTGGGTGGAGAGTCGATATTA 59.108 50.000 0.00 0.00 0.00 0.98
2345 3014 1.689273 GCTGGGTGGAGAGTCGATATT 59.311 52.381 0.00 0.00 0.00 1.28
2346 3015 1.133325 AGCTGGGTGGAGAGTCGATAT 60.133 52.381 0.00 0.00 0.00 1.63
2347 3016 0.259065 AGCTGGGTGGAGAGTCGATA 59.741 55.000 0.00 0.00 0.00 2.92
2348 3017 0.616111 AAGCTGGGTGGAGAGTCGAT 60.616 55.000 0.00 0.00 0.00 3.59
2349 3018 1.228894 AAGCTGGGTGGAGAGTCGA 60.229 57.895 0.00 0.00 0.00 4.20
2350 3019 1.216710 GAAGCTGGGTGGAGAGTCG 59.783 63.158 0.00 0.00 0.00 4.18
2351 3020 0.534873 GAGAAGCTGGGTGGAGAGTC 59.465 60.000 0.00 0.00 0.00 3.36
2352 3021 0.116143 AGAGAAGCTGGGTGGAGAGT 59.884 55.000 0.00 0.00 0.00 3.24
2353 3022 0.823460 GAGAGAAGCTGGGTGGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
2354 3023 0.115152 TGAGAGAAGCTGGGTGGAGA 59.885 55.000 0.00 0.00 0.00 3.71
2355 3024 0.979665 TTGAGAGAAGCTGGGTGGAG 59.020 55.000 0.00 0.00 0.00 3.86
2356 3025 1.434188 TTTGAGAGAAGCTGGGTGGA 58.566 50.000 0.00 0.00 0.00 4.02
2357 3026 2.276732 TTTTGAGAGAAGCTGGGTGG 57.723 50.000 0.00 0.00 0.00 4.61
2358 3027 3.683802 AGATTTTGAGAGAAGCTGGGTG 58.316 45.455 0.00 0.00 0.00 4.61
2359 3028 4.077822 CAAGATTTTGAGAGAAGCTGGGT 58.922 43.478 0.00 0.00 36.36 4.51
2360 3029 4.330250 TCAAGATTTTGAGAGAAGCTGGG 58.670 43.478 0.00 0.00 38.37 4.45
2361 3030 5.335504 GGTTCAAGATTTTGAGAGAAGCTGG 60.336 44.000 0.00 0.00 43.76 4.85
2362 3031 5.335504 GGGTTCAAGATTTTGAGAGAAGCTG 60.336 44.000 0.00 0.00 43.76 4.24
2363 3032 4.764308 GGGTTCAAGATTTTGAGAGAAGCT 59.236 41.667 0.00 0.00 43.76 3.74
2364 3033 4.520492 TGGGTTCAAGATTTTGAGAGAAGC 59.480 41.667 0.00 0.00 43.76 3.86
2365 3034 6.830873 ATGGGTTCAAGATTTTGAGAGAAG 57.169 37.500 0.00 0.00 43.76 2.85
2401 3070 8.639761 GCTGTTCATATCCTTAACTAGTTAGGA 58.360 37.037 22.58 23.46 31.71 2.94
2402 3071 8.643324 AGCTGTTCATATCCTTAACTAGTTAGG 58.357 37.037 15.90 15.90 0.00 2.69
2405 3074 8.643324 CCTAGCTGTTCATATCCTTAACTAGTT 58.357 37.037 13.68 13.68 0.00 2.24
2406 3075 8.005388 TCCTAGCTGTTCATATCCTTAACTAGT 58.995 37.037 0.00 0.00 0.00 2.57
2407 3076 8.410673 TCCTAGCTGTTCATATCCTTAACTAG 57.589 38.462 0.00 0.00 0.00 2.57
2408 3077 8.958060 ATCCTAGCTGTTCATATCCTTAACTA 57.042 34.615 0.00 0.00 0.00 2.24
2409 3078 7.863901 ATCCTAGCTGTTCATATCCTTAACT 57.136 36.000 0.00 0.00 0.00 2.24
2410 3079 7.934120 ACAATCCTAGCTGTTCATATCCTTAAC 59.066 37.037 0.00 0.00 0.00 2.01
2411 3080 8.034313 ACAATCCTAGCTGTTCATATCCTTAA 57.966 34.615 0.00 0.00 0.00 1.85
2412 3081 7.618019 ACAATCCTAGCTGTTCATATCCTTA 57.382 36.000 0.00 0.00 0.00 2.69
2413 3082 6.506538 ACAATCCTAGCTGTTCATATCCTT 57.493 37.500 0.00 0.00 0.00 3.36
2414 3083 7.618019 TTACAATCCTAGCTGTTCATATCCT 57.382 36.000 0.00 0.00 0.00 3.24
2415 3084 8.677148 TTTTACAATCCTAGCTGTTCATATCC 57.323 34.615 0.00 0.00 0.00 2.59
2440 3109 9.745018 TTCTCTCAGAATCTTGTATCCATTTTT 57.255 29.630 0.00 0.00 0.00 1.94
2441 3110 9.393512 CTTCTCTCAGAATCTTGTATCCATTTT 57.606 33.333 0.00 0.00 33.13 1.82
2442 3111 7.498570 GCTTCTCTCAGAATCTTGTATCCATTT 59.501 37.037 0.00 0.00 33.13 2.32
2443 3112 6.991531 GCTTCTCTCAGAATCTTGTATCCATT 59.008 38.462 0.00 0.00 33.13 3.16
2444 3113 6.327104 AGCTTCTCTCAGAATCTTGTATCCAT 59.673 38.462 0.00 0.00 33.13 3.41
2445 3114 5.660417 AGCTTCTCTCAGAATCTTGTATCCA 59.340 40.000 0.00 0.00 33.13 3.41
2446 3115 5.984926 CAGCTTCTCTCAGAATCTTGTATCC 59.015 44.000 0.00 0.00 33.13 2.59
2447 3116 5.984926 CCAGCTTCTCTCAGAATCTTGTATC 59.015 44.000 0.00 0.00 33.13 2.24
2448 3117 5.163322 CCCAGCTTCTCTCAGAATCTTGTAT 60.163 44.000 0.00 0.00 33.13 2.29
2449 3118 4.161189 CCCAGCTTCTCTCAGAATCTTGTA 59.839 45.833 0.00 0.00 33.13 2.41
2450 3119 3.055240 CCCAGCTTCTCTCAGAATCTTGT 60.055 47.826 0.00 0.00 33.13 3.16
2451 3120 3.055240 ACCCAGCTTCTCTCAGAATCTTG 60.055 47.826 0.00 0.00 33.13 3.02
2452 3121 3.055240 CACCCAGCTTCTCTCAGAATCTT 60.055 47.826 0.00 0.00 33.13 2.40
2453 3122 2.500910 CACCCAGCTTCTCTCAGAATCT 59.499 50.000 0.00 0.00 33.13 2.40
2454 3123 2.419851 CCACCCAGCTTCTCTCAGAATC 60.420 54.545 0.00 0.00 33.13 2.52
2455 3124 1.558756 CCACCCAGCTTCTCTCAGAAT 59.441 52.381 0.00 0.00 33.13 2.40
2456 3125 0.979665 CCACCCAGCTTCTCTCAGAA 59.020 55.000 0.00 0.00 32.50 3.02
2457 3126 0.115152 TCCACCCAGCTTCTCTCAGA 59.885 55.000 0.00 0.00 0.00 3.27
2458 3127 0.536260 CTCCACCCAGCTTCTCTCAG 59.464 60.000 0.00 0.00 0.00 3.35
2459 3128 0.906756 CCTCCACCCAGCTTCTCTCA 60.907 60.000 0.00 0.00 0.00 3.27
2460 3129 1.621672 CCCTCCACCCAGCTTCTCTC 61.622 65.000 0.00 0.00 0.00 3.20
2461 3130 1.614824 CCCTCCACCCAGCTTCTCT 60.615 63.158 0.00 0.00 0.00 3.10
2462 3131 1.904990 GACCCTCCACCCAGCTTCTC 61.905 65.000 0.00 0.00 0.00 2.87
2463 3132 1.920835 GACCCTCCACCCAGCTTCT 60.921 63.158 0.00 0.00 0.00 2.85
2464 3133 2.671682 GACCCTCCACCCAGCTTC 59.328 66.667 0.00 0.00 0.00 3.86
2465 3134 3.322466 CGACCCTCCACCCAGCTT 61.322 66.667 0.00 0.00 0.00 3.74
2466 3135 3.625632 ATCGACCCTCCACCCAGCT 62.626 63.158 0.00 0.00 0.00 4.24
2467 3136 2.595009 GAATCGACCCTCCACCCAGC 62.595 65.000 0.00 0.00 0.00 4.85
2468 3137 0.978146 AGAATCGACCCTCCACCCAG 60.978 60.000 0.00 0.00 0.00 4.45
2469 3138 0.976073 GAGAATCGACCCTCCACCCA 60.976 60.000 4.93 0.00 0.00 4.51
2470 3139 0.976073 TGAGAATCGACCCTCCACCC 60.976 60.000 11.86 0.00 38.61 4.61
2471 3140 0.902531 TTGAGAATCGACCCTCCACC 59.097 55.000 11.86 0.00 38.61 4.61
2472 3141 1.825474 TCTTGAGAATCGACCCTCCAC 59.175 52.381 11.86 0.00 38.61 4.02
2473 3142 2.231716 TCTTGAGAATCGACCCTCCA 57.768 50.000 11.86 2.51 38.61 3.86
2474 3143 3.386402 AGAATCTTGAGAATCGACCCTCC 59.614 47.826 11.86 0.00 38.61 4.30
2475 3144 4.664150 AGAATCTTGAGAATCGACCCTC 57.336 45.455 8.50 8.50 38.61 4.30
2476 3145 4.383552 CCAAGAATCTTGAGAATCGACCCT 60.384 45.833 23.32 0.00 38.61 4.34
2477 3146 3.873952 CCAAGAATCTTGAGAATCGACCC 59.126 47.826 23.32 0.00 38.61 4.46
2478 3147 4.759782 TCCAAGAATCTTGAGAATCGACC 58.240 43.478 23.32 0.00 38.61 4.79
2479 3148 5.655488 TCTCCAAGAATCTTGAGAATCGAC 58.345 41.667 23.32 0.00 38.61 4.20
2480 3149 5.921962 TCTCCAAGAATCTTGAGAATCGA 57.078 39.130 23.32 10.24 38.61 3.59
2492 3161 2.806945 TTGGGCGATTCTCCAAGAAT 57.193 45.000 1.92 1.92 46.84 2.40
2493 3162 2.577606 TTTGGGCGATTCTCCAAGAA 57.422 45.000 7.91 0.00 43.05 2.52
2494 3163 2.039746 TCTTTTGGGCGATTCTCCAAGA 59.960 45.455 7.91 0.89 43.05 3.02
2495 3164 2.436417 TCTTTTGGGCGATTCTCCAAG 58.564 47.619 7.91 0.00 43.05 3.61
2496 3165 2.556622 GTTCTTTTGGGCGATTCTCCAA 59.443 45.455 4.79 4.79 40.85 3.53
2497 3166 2.159382 GTTCTTTTGGGCGATTCTCCA 58.841 47.619 0.00 0.00 0.00 3.86
2498 3167 2.437413 AGTTCTTTTGGGCGATTCTCC 58.563 47.619 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.