>input_sequence_77597
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---------------------------------------------ATGGCGAACGGCGTGGGCTCGGCGAAGGCGGAGAT
CTGCGCCGGGCTGGGCATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGCTACGACGCCAACGGCGACGGCAAGATCT
CGGCGGACGAGCTGGCGTCCGTGCTGCTCGCGCTGGGCGCGCCCCCGGGGCCAGGGGAGGTGCAGAGCATGATGGAGGAG
ATGGACGCCGACAGGGACGGCTTCGTCGACCTCCACGAGTTCGCCGCCTTCCACTGCGGGCCCTGCAAGGGCGGCGCGGC
CGCAGACGCCAAGGAGCAGGAGGCCGCCACGGAGGCGGAGCTCAAGGAGGCCTTCCGGATGTACGACGCCGACCGCAACG
GGCTCATCTCCGCGCGGGAGCTTCACCGCGTGCTCCGCCAGCTCGGGGAGAAGTGCTCCGTTGCTGACTGCTCGCGCATG
ATTCGATCCGTCGACGCCGACGGCGACGGCAGCGTCAACTTCGAGGAATTCAAGAAGATGATGGGCGGCGGAGGGAGGAG
CTAG----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G125800
TTATTATCATTTGTAATGCAGTGCAGAATAAAGAGTTCAATGTTTGTGTACCACCTTTATTTTGTGCATCAGGTGTATAG
AGTCGAATTACATTTTT-TATCAAAGTACATTGCAAGCGTATTATTCCAAAAAAAAATATCATTGCCTATCATTCTATCT
ATGTAAAATTTAACATGCAACCAATACAAATTTTCAAAAGCACGTGGCAACGCACGGGCAGTCTACTAGTAGTAGTAACT
TTCTAACAATTTTCTTTTTTGGCGAGGTTATTTGATACCTGGAACGCCACCATCCTCACTTTGCTGAACCTGTAGGAAAA
TTATGGCGACCCCATTCATACTCGTCTATCTGTCCTGAGCAGAGTGGAACCATCCTCGGCGTTTGCTGTTCCACTGCAGC
GAGGAAATCCCTACGCGGTGCCAGGCCGCGTGAAGCCATCATCAATCACTCTCCCTCTGATTGGCAACGCCCACCAATCA
ACGCAACCTTCCGAACACGATACGGTCGGCGGACACCTTTCGTACTCCTATTTCCCCTCA--GTGTTTGCACAACTCGAC
AGCGCATTTCTTCCTTTCGGGGCCCTCACTCACTCCCCGACGCTCTGGTCCCACCGCCAGCAAGCCACCTGGCCCCGCAA
GCCAGCCGCTAGCAAACGCCTCAGCGCCCGCCTCCGCTGTACGGGCTGCGATTTTTTGCTTCCTTTCTCCAGACGACTCC
CTCACGAGGGCGTCGCAGTCGTACCTACGCGCTGCACCGCTTTTCCGGCACCCGTCGTTGTTACACCGAGTTTACATGTG
GGCCGGTATGCGCAGACCGTGGGTGGGAGGCCCACGCGTCTGTGAGATTACGTGATATTTCGGCCAAGAATCCACCTACG
CGTAGTTCTGCCGCACGTTACGTGGATAAAAAGGCAGGACCGTTCGGGGGGCGAAGAATTGCGCACAGCAACCAACCGTG
TCA--GGGAAGGAATTGAGGCGAGCGAGAGAGAACCCCACATCACATGGCGAACGGCGTGGGCTCGGCGAAGGCGGAGAT
CTGCGCCGGGCTGGGCATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGCTACGACGCCAACGGCGACGGCAAGATCT
CGGCGGACGAGCTGGCGTCCGTGCTGCTCGCGCTGGGCGCGCCCCCGGGGCCAGGGGAGGTGCAGAGCATGATGGAGGAG
ATGGACGCCGACAGGGACGGCTTCGTCGACCTCCACGAGTTCGCCGCCTTCCACTGCGGGCCCTGCAAGGGCGGCGCGGC
CGCAGACGCCAAGGAGCAGGAGGCCGCCACGGAGGCGGAGCTCAAGGAGGCCTTCCGGATGTACGACGCCGACCGCAACG
GGCTCATCTCCGCGCGGGAGCTTCACCGCGTGCTCCGCCAGCTCGGGGAGAAGTGCTCCGTTGCTGACTGCTCGCGCATG
ATTCGATCCGTCGACGCCGACGGCGACGGCAGCGTCAACTTCGAGGAATTCAAGAAGATGATGGGCGGCGGAGGGAGGAG
CTAGGTCGGTAAGGGCCGGCCATGAGCAAACAATGCTGCATCTGCATGCCTCGTTGAGGGTTTTGTTCCTCCATGGTGCT
TAATTTAA-TTTTAATTAATCTCAAAGTGAAAGGCTTAGGCTCCCCGTAATGCGAATACTAATGATGATGCGGGTGAAGT
GATTAAT----------------------------------------------------------------------TAT
GTAAATCTAA-------------------------------------------------TCTTCTAGTAGTAG------T
AGTACTACTAATGATGATGGGTGTACTAAGAAATTTGGTCTGGGGTTGTTTGCAATGAATTAGAACTCGTTTGAAACTCT
TTGTTTTTCTGTTTGAAACTCTTTGTTTTTCTGTTTGAAACTCATGCAGAATCAATAACTATATTGTAATGGTTGTGAAA
ATCGGGTCTGGAAGTTGTTGGGGACGATGTTGAATCTATATACCTTTTGTTGTACTCAAATTACCAGCTTAGGGCATCAT
CAACGATGGATCATTAAAATGACCAGCTTAGGGCATCATCAACGGAAATCCTACAGCCCGGTCACATATCGCCACAAATT
GAGGGAAGTTGAGTCCGGACGTCCGCCATGTCGGACTTTAGCTTGATCCCACCCCAAAAACCTCTTTCACGCGTCCGCTA
ACGAAAAAAATTATCCCTAAAGTCGAAACTAAAAGGAACGT---------------------------------------
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------------------ATAAACCAATGCTTTCATAGATTCGATCCTGGTTTATTTATAATTATAACTTCCACACCTAT
TCATTTGTCATTTGAAATAATTTCCCATATAAAGAAACAAAAAGAGTCAAAGAAAGGATGGGAGATGTTTCCCATGTAGA
GTCCTTCGTGCCATGCATTCACTCCGACGCAGGCCCAGTTCTTTTTCTCCCATAATATCGACTCTCCACCCAGCTTCTCT
CAAAATCTTGAACCCATATATTTTTACAATCCTAACTAGTTAAGGATATGAACAGCTAGGATTGTAAAAAAAATGGATAC
AAGATTCTGAGAGAAGCTGGGTGGAGGGTCGATTCTCAAGATTCTTGGAGAATCGCCCAAAAGAACT
>chr3A_1
TTATTATCATTTGTAATGCAGTGCAGAATAAAGAGTTTAATGTTTGTGTACCACCTTTATTATGTGCATCATGTGTATAG
GGTCGAATTACATTTTTTTATCAAAGTACATTGCAAGCGTATTATTTCAAAAAAAAATGTTCTTGCCTATCTTTCTATCT
ATGTAAAATTTGACATGCAACCAATACAAATTTTTAAAAGCCCGTGGCAACGCACGGGCAGTCTACTAGTGATAGTAGTA
ACAGAACAGCGAAAATTCAATATGGC------------------------------------------------------
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---------------------------------------TCGTACTACTAGATAGTACTATTATCTCAGCCTC-------
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-------------------------------------------AGGCATTCAAGTG------------------------
-------------------------------------------------------------------------------T
TATTATCATTTGTAATGCAGTGCAGAATAAAGAGTTTAATGTTTATGTACCACCTTTATTATGTGCATCAGGTGTATAGG
GTCGAATTACATTTTTTTATCAAAGTACATTGCAAGCGTATTATTTCAAAAAAAATGTTCTTGCCTATCTTTCTATCTAT
GTAAAATTTGACATGCAACCAATACAAATTTTTAAAAGCCCGTGGCAACGCACGGGCAGTCTACTAGTGATAG------T
AGTAAC--------------------------------------------------------------------------
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>chr1A_264
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------------------------AGGTTATTCGAAATTTGGGACGCCACCATCCTCACTTTGCTGAGCCTGTGGGAAAA
TTATGGCGACCCCATTCATACTCGTCTATCTGTCCTGAGCAGAGTGGAACCATCCTCGGCGTTTGCTGTTCCACTGCAGT
GAGGAAATCCCTACGCGGTGCCAGGCCGCGTGAAGCCATCATCAATCACTCTCGCTCTGATTGGCAACGCCCACCAATCA
ACGCAACCTTCCGAACACGATACGGTCGGCGGACACCTTTCGTACTCCTATTTCCCCTCACAGTCGTTGCACAACTCGAC
AGCGCATTTCTTCCTTTCGGGGCCCTCACTCACTCCCGGACGCTCGGGTCCCACCGCCAGCAAGCCACCTGGCCCCGCAA
GCCAGTCGCTAGCAAACGCCCCAGCGTCCGCCTCCGCTGTACGGGCTGCGATTTTTTGCTTCCTTTCTCCAGACGACTCC
CTCACGAGGGCGTCGCAGTCGTACCTACGCGCTGCACCGCTTTTCTGGCACCCGTCGTTGTTAGACCCAGTTTACATGTG
GGCCGATATGCGCAGACGGTGGGTGGGAGGCCCACGCGTCTGTGAAATTACGTGATATTTCGGCCAAGAATCTACCTACG
CGTAGTTCTGCCGCACGTTACGTGGATAAAAAGGCAGGACCGTTCGGGGGGCGAAGAATTGCGCACAGCAACCAA-CGTG
TCA--GGGAAGGAATTGAGGCGAGCGAGAGAGAACCCCACATCACATGGCGAACGGCGTGGGCTCGGCGAAGGCGGAGAT
CTGCGCCGGGCTGGGCATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGCTACGACGCCAACGGCGACGGCAAGATCT
CGGCGGACGAGCTGGCGTCCGTGCTGCGCGCGCTGGGCGCGCCCCCGGGGCCAGGGGAGGTGCAGAGCATGATGGAGGAG
ATGGACGCCGACAGGGACGGCTTCGTCGACCTCCACGAGTTCGCCGCCTTTCACTGCGGCCCCTGCAAGGGCAGCGCGGC
CGCAGACGCCAAGGAGCAGGAGGCCGCCACGGAGGCCGAGCTCAAGGAGGCCTTCCGGATGTACGACGCCGACCGCAACG
GGCTCATCTCCGCGCGGGAGCTTCACCGTGTGCTCCGCCAGCTCGGGGAGAAGTGCTCCGTTGCTGACTGCTCGCGCATG
ATACGATCCGTCGACGCCGACGGCGACGGCAGCGTCAACTTCGAGGAATTCAAGAAGATGATGGGCGGCGGAGGTAGGAG
CTAGGTTGGTAAGGGCCGGCCATCAGCAAACAATGTTGCATCTACATGCCTCGTTGAGGGTTTTGTTCTTCCATGGTGCT
TAATTTAATTTATAATTAATCCCAAAGTGAAAGGCTTAGGCTCCCCGTAATGCGAATACTGATGATGATGCGGGTGAAGT
GATTAAT----------------------------------------------------------------------TAT
GTAAAGCTAA-------------------------------------------------TCTGC------TAG------T
AGTACTACTAATGATGATGGGTGTACTAAGAAATTTGGTTTGGGATTGTTTGCAATGAATTAGAACTCGTTTGAAACTCT
TTGTT----------------------TTTCTGTTTGAAACTCATGCAGAAACAATAACTATATTGTAAAGGTTGTGAAA
ATCGGGTCCGCAAGTTCTTGGGGATGTCGTTGAATCTGTATATCATTTGTTGTACTCAAATTACCA--------------
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>chr1B_432
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--------------------------------AAGCCATCATCAATCACTCTCGCTCTGATTGGCAACGCCCACCAATCA
ACGCAACCTTGCGAACACGATACGGTCGGCGGACACCTTTCGTACTCCTATTTCCCCTCA--GTCTTTGCACAACTCGAC
AGCGCATTTCTTCCTTTCGGGGCCCTCACTCACTCCCCGACGCTCTGGTCCCACCGCCAGCAAGCCACGTGGCCCCGCAA
GCCAGCCGCTAGCAAACGCCTCAGCGTCCGCCTCCGCTGTACTAGCTGCGATTTTTCGCTTCCTTTCTCCAGACGACTCC
CTCACGAGGGCGTCGCAGTCGTACCTACGCGCTGCACCGCTTTTCCGGCACCCGTCGTTGTTAAACCCAGTTTACATGTG
GGCCAATATGCGCAGATCGTGGGTGGGAGGCCCACGCGTCTGTGAAATTACGTGATATTTCGGCCAAGAATCTACCTACG
CGTAGTTCTGCCGCACGTTACGTGGATAAAAAGGCATGACCGTTCGGGCGGCGAAGAATTGCGCATAGCAACCAA-CCGT
GTCAGGGGAAGGAATTGACGCGAGCGAGAGAGAACCCCACATCACATGGCGAACGGCGTGAGCTCGGCGAAGGCGGAGAT
CTGCGCCGGGCTGGGCATGCCGATGGCGGAGCTGGAGCAGGTGTTCCGGCGCTATGACGCCAACGGCGACGGTAAGATCT
CCGCGGACGAGCTGGCGTCCGTGCTGTGCGCGCTGGGCGCGCCCCCGGGGCCAGGGGAGGTGCAGAGCATGATGGAGGAG
ATGGACGCCGACAGGGACGGTTTCGTCGACCTCCACGAGTTCGCCGCCTTCCACTGCGGCCCCTGCAAGGGCGGCGCGGC
CGCAGACGCCAAGGACCAGGAGGCCGCCACGGAGGCGGAGCTCAAGGAGGCCTTCCGGATGTACGACGCCGACCGCAACG
GGCTCATCTCCGCGCGGGAGCTTCACCGCGTGCTCCGCCAGCTCGGGGAGAAGTGCTCCGTTGCTGACTGCTCGCGCATG
ATTCGATCCGTCGACGCCGACGGCGACGGCAGCGTCAATTTCGAGGAATTCAAGAAGATGATGGGCGGCGGAGGTAGGAG
CTAGGTCGGTAAGGGCCGGCCATGAGCAAACAATGCTGCATCTGCATGCCTCGTTGAGGGTTTTGTTCCTCCATGGTGCT
TAATTTAATTTTTAATTAATCTCAAAGTGAAAGGCTTAGGCTCCCTGTAATGCGAATACTAACGATGATGCGGGTGAAGT
GATTAAT----------------------------------------------------------------------TAT
GTAAAGCTAA-------------------------------------------------TCTGC------TAGTAGTAGT
AGTACTACTAATGATGATGGGTGTACTAAGAAATTTGGTCTGGGATTGTTTGCAATGAATTATCACTCGTATGAAACTCT
TTGTT----------------------TTTCTGTTTGAAACTCATGCAGAAACAATAACTATATTGTAATGGTTGTGAAA
ATCGGGTCTGGAAGTTCTTGGGGACGATGTTGAATCTGTATACCATTTGTTGTACTCAAATTA-----------------
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>chr7B_2106
GCTAC---------------------------------------------------------------------------
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--GAAAAAAATTATCCCTAAAGTCGAAACTAAAAGGAACGTATAAACCAATGCTTCCATAGATTCGATCCTGGTTTATTT
ACAATTATAACTTCCACACCTATTCATTTCTCATTTGGGATAATTTCCCATATAAAGAAAGAAAAAGAGTCAAAGAAAGG
ATGGGAGATGTTTCCCATGTCAAATCNNNNNNNNNN--------------------------------------------
----------------------------AGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAGCAACTTTAGTC
GCCATCTCCATATCTGGTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATT
AAGAGATCCATTCGAAGAACACGGAGACTAATTTAAGTAAGAAGTCCCCCTATCTGGGAGACTTCTTACTTAAATGAAAT
TATTTTATTCTTTTAGTTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCGAAAAAAATTATCCCTAAAGT
CGAAACTAAAAGGAACGTATAAACCAATGCTTCCATAGATTCGATCCTGGTTTATTTACAATTATAACTTCCACACCTAT
TCATTTCTCATTTGGGATAATTTCCCATATAAAGAAAGAAAAAGAGTCAAAGAAAGGATGGGAGATGTTTCCCATGT---
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>chr3B_2111
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-CGAAAAAAATTATCCCTAAAGTCGAAACTAAAAGGAACGTATAAACCAATGCTTCCATAGATTCGATCCTGGTTTATTT
ACAATTATAACTTCCACACCTATTCATTTGTCATTTGGGATAATTTCCCATATAAAGAAAGAAAAAGAGTCAAAGAAAGG
ATGGGAGATGTTTCCCATGTCAAATCAAAAAAGAGAGGTGAAAGATACTATAACAATGTGTATCAGGCTGCCTGTTTCCT
TGTAGTTGTAAATACACGATCTTTTCGTAGATCCATTGTAATCTTGAAATTCTATAAAAATGGAAACAGCAACTTTAGTC
GCCATCTCCATATCTGGTTTACTTGTAAGCTTTACTGGGTATGCCTTATATACCGCGTTTGGGCAACCCTCTCAACAATT
AAGAGATCCATTCGAAGAACACGGAGACTAATTTAAGTAAGAAGTCCCCCTATCTGGGAGACTTCTTACTTAAATGAAAT
TATTTTATTCTTTTAGTTGGAGTTGGTGGAACCTTAGGTGGTTCTCGGAAGAAGATAGCAAAAAAAATTATCCCTAAAGT
CGAAACTAAAAGGAACGTATAAACCAATGCTTCCATAGATTCGATCCTGGTTTATTTACAATTATAACTTCCACACCTAT
TCATTTGTCATTTGGGATAATTTCCCATATAAAGAAAGAAAAAGAGTCAAAGAAAGGATGGGAGATGTTTCCCATGT---
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>SNPs
-------------------------------------S-----------------------S---------S--------
S---------------------------------------------S-----------S-SS---------S--------
-----------S----------------------S------S----------------------------SS-----SSS
SSSS----SSSSSSS--SSSSSS---------S--S-SS---S------------------------S-----S------
-------------------------------------------------------------------------------S
-----------------------------------------------------S--------------------------
----------------------------------------------------------------S---------------
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--------------------------S-----------------------------------------------------
---------------------------------------------------------------S---S------------
-----S---------------------------------------S--------------------------S-------
---------------------------------------------------------------------------S----
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---------------------------S----------------------------------------------------
-----------------------------------------------------------S--------------------
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-----S--------------------------------------------------------S-----SS----------
--------------------------------------------S-----------------------------------
-----SSSSSSSSSSSSSSSSSSSSSS------------------------S----------------------------
----------------S--------------------S------S---------------------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------------------------------------------------------------------
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--------------------------------S-------------------------S---------------------
--------------SS---------------------S---------------------------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_788
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-------------------------------------------------ACCCGTCGTTGTTACACCG------------
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>reverse_2129
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------------------------------------------------TCCTACAGCCCGGTCACATA------------
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