Multiple sequence alignment - TraesCS1D01G124000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G124000 chr1D 100.000 2213 0 0 1 2213 126971044 126973256 0.000000e+00 4087
1 TraesCS1D01G124000 chr1A 97.380 916 23 1 937 1851 142101554 142102469 0.000000e+00 1557
2 TraesCS1D01G124000 chr1A 92.407 777 56 3 1 775 142100673 142101448 0.000000e+00 1105
3 TraesCS1D01G124000 chr1B 95.544 965 28 7 891 1851 195102721 195101768 0.000000e+00 1530
4 TraesCS1D01G124000 chr1B 90.931 827 66 7 1 820 195103598 195102774 0.000000e+00 1103
5 TraesCS1D01G124000 chr7B 95.208 313 15 0 1900 2212 591582568 591582880 1.530000e-136 496
6 TraesCS1D01G124000 chr7B 84.615 312 48 0 1901 2212 103509528 103509839 5.930000e-81 311
7 TraesCS1D01G124000 chr6D 88.038 209 19 3 991 1196 17317660 17317865 2.200000e-60 243
8 TraesCS1D01G124000 chr6A 87.560 209 20 3 991 1196 17943204 17943409 1.020000e-58 237
9 TraesCS1D01G124000 chr6B 86.829 205 21 3 991 1192 30324030 30324231 7.950000e-55 224


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G124000 chr1D 126971044 126973256 2212 False 4087.0 4087 100.0000 1 2213 1 chr1D.!!$F1 2212
1 TraesCS1D01G124000 chr1A 142100673 142102469 1796 False 1331.0 1557 94.8935 1 1851 2 chr1A.!!$F1 1850
2 TraesCS1D01G124000 chr1B 195101768 195103598 1830 True 1316.5 1530 93.2375 1 1851 2 chr1B.!!$R1 1850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 459 0.036671 GACAACTAGGGTTCCCACCG 60.037 60.0 10.73 0.65 45.39 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2040 2071 0.032267 GCGAGAGGAGGAATTACCCG 59.968 60.0 0.0 0.0 40.05 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 8.605325 AAAGGATGGTAAGCTCTAACTAACTA 57.395 34.615 0.00 0.00 0.00 2.24
128 129 4.804868 ATCCAACTTATGTGCATTGCAA 57.195 36.364 13.94 0.00 41.47 4.08
182 183 1.885871 GCAAATCCAAAGAGGCGCT 59.114 52.632 7.64 0.00 37.29 5.92
199 201 2.602267 TCCTTGGAGGCGGACGAA 60.602 61.111 0.00 0.00 34.61 3.85
304 306 2.659016 CTCCCTGAGCTGCGTGAA 59.341 61.111 0.00 0.00 0.00 3.18
343 345 1.694696 AGGAGAGAGACAACAACACCC 59.305 52.381 0.00 0.00 0.00 4.61
382 385 3.303135 AGAGAGACAACGGCGCCA 61.303 61.111 28.98 0.00 0.00 5.69
417 420 1.831736 AGTCACATAAGGGGACGAAGG 59.168 52.381 0.00 0.00 36.68 3.46
418 421 1.829222 GTCACATAAGGGGACGAAGGA 59.171 52.381 0.00 0.00 0.00 3.36
419 422 2.108168 TCACATAAGGGGACGAAGGAG 58.892 52.381 0.00 0.00 0.00 3.69
424 428 0.708802 AAGGGGACGAAGGAGGACTA 59.291 55.000 0.00 0.00 0.00 2.59
450 454 3.166679 AGAGAGTGACAACTAGGGTTCC 58.833 50.000 0.00 0.00 36.52 3.62
455 459 0.036671 GACAACTAGGGTTCCCACCG 60.037 60.000 10.73 0.65 45.39 4.94
472 476 3.256136 CCACCGAACTAGTCACTCTCTTT 59.744 47.826 0.00 0.00 0.00 2.52
482 486 1.968493 TCACTCTCTTTGCCCTTACGT 59.032 47.619 0.00 0.00 0.00 3.57
585 589 3.770040 CGGTGGCACGATCCCTGA 61.770 66.667 12.17 0.00 35.47 3.86
636 640 1.645034 CTTCTGCGGTCGATGACAAT 58.355 50.000 0.00 0.00 33.68 2.71
659 663 3.246112 CCCACCCCGTTGACTCCA 61.246 66.667 0.00 0.00 0.00 3.86
689 693 9.475620 TCTATAGAGAGACAAAATGGTAGAACA 57.524 33.333 0.00 0.00 0.00 3.18
695 699 4.393062 AGACAAAATGGTAGAACATCAGCG 59.607 41.667 0.00 0.00 0.00 5.18
703 708 8.902540 AATGGTAGAACATCAGCGATAAATTA 57.097 30.769 0.00 0.00 0.00 1.40
704 709 8.902540 ATGGTAGAACATCAGCGATAAATTAA 57.097 30.769 0.00 0.00 0.00 1.40
705 710 8.725405 TGGTAGAACATCAGCGATAAATTAAA 57.275 30.769 0.00 0.00 0.00 1.52
785 790 5.123820 TCAAAATCGAATGGCTAGAAGTTGG 59.876 40.000 0.00 0.00 0.00 3.77
786 791 4.487714 AATCGAATGGCTAGAAGTTGGA 57.512 40.909 0.00 0.00 0.00 3.53
787 792 3.247006 TCGAATGGCTAGAAGTTGGAC 57.753 47.619 0.00 0.00 0.00 4.02
788 793 2.565391 TCGAATGGCTAGAAGTTGGACA 59.435 45.455 0.00 0.00 0.00 4.02
789 794 2.673368 CGAATGGCTAGAAGTTGGACAC 59.327 50.000 0.00 0.00 0.00 3.67
790 795 2.789409 ATGGCTAGAAGTTGGACACC 57.211 50.000 0.00 0.00 0.00 4.16
791 796 0.320374 TGGCTAGAAGTTGGACACCG 59.680 55.000 0.00 0.00 0.00 4.94
793 798 1.001633 GGCTAGAAGTTGGACACCGAA 59.998 52.381 0.00 0.00 0.00 4.30
794 799 2.354805 GGCTAGAAGTTGGACACCGAAT 60.355 50.000 0.00 0.00 0.00 3.34
795 800 2.930682 GCTAGAAGTTGGACACCGAATC 59.069 50.000 0.00 0.00 0.00 2.52
817 825 1.740296 CGGTCGGACGCTCCATTTT 60.740 57.895 1.43 0.00 35.91 1.82
839 847 5.934935 TTTTTATGGAAGAAGGTCGTGAC 57.065 39.130 0.00 0.00 0.00 3.67
840 848 4.610605 TTTATGGAAGAAGGTCGTGACA 57.389 40.909 2.00 0.00 0.00 3.58
841 849 4.610605 TTATGGAAGAAGGTCGTGACAA 57.389 40.909 2.00 0.00 0.00 3.18
842 850 3.703001 ATGGAAGAAGGTCGTGACAAT 57.297 42.857 2.00 0.00 0.00 2.71
843 851 3.040147 TGGAAGAAGGTCGTGACAATC 57.960 47.619 2.00 0.00 0.00 2.67
844 852 2.289444 TGGAAGAAGGTCGTGACAATCC 60.289 50.000 2.00 2.85 0.00 3.01
845 853 2.289444 GGAAGAAGGTCGTGACAATCCA 60.289 50.000 2.00 0.00 0.00 3.41
846 854 3.399330 GAAGAAGGTCGTGACAATCCAA 58.601 45.455 2.00 0.00 0.00 3.53
847 855 3.703001 AGAAGGTCGTGACAATCCAAT 57.297 42.857 2.00 0.00 0.00 3.16
848 856 3.600388 AGAAGGTCGTGACAATCCAATC 58.400 45.455 2.00 0.00 0.00 2.67
849 857 2.403252 AGGTCGTGACAATCCAATCC 57.597 50.000 2.00 0.00 0.00 3.01
850 858 1.909302 AGGTCGTGACAATCCAATCCT 59.091 47.619 2.00 0.00 0.00 3.24
851 859 2.305927 AGGTCGTGACAATCCAATCCTT 59.694 45.455 2.00 0.00 0.00 3.36
852 860 2.420022 GGTCGTGACAATCCAATCCTTG 59.580 50.000 2.00 0.00 0.00 3.61
853 861 3.074412 GTCGTGACAATCCAATCCTTGT 58.926 45.455 0.00 0.00 38.26 3.16
856 864 2.832672 GACAATCCAATCCTTGTCGC 57.167 50.000 0.24 0.00 41.12 5.19
857 865 2.359900 GACAATCCAATCCTTGTCGCT 58.640 47.619 0.24 0.00 41.12 4.93
860 868 0.911769 ATCCAATCCTTGTCGCTGGA 59.088 50.000 0.00 0.00 40.36 3.86
872 880 3.531538 TGTCGCTGGAGTAATTGGATTC 58.468 45.455 0.00 0.00 0.00 2.52
873 881 3.055458 TGTCGCTGGAGTAATTGGATTCA 60.055 43.478 0.00 0.00 0.00 2.57
876 884 3.063997 CGCTGGAGTAATTGGATTCACAC 59.936 47.826 0.00 0.00 0.00 3.82
898 910 4.163458 ACGACCTTCTCCCATAAATAAGCA 59.837 41.667 0.00 0.00 0.00 3.91
906 933 3.876914 TCCCATAAATAAGCACAGCGAAG 59.123 43.478 0.00 0.00 0.00 3.79
1129 1158 1.774217 AAGTTCACCTGGGAGGGCA 60.774 57.895 0.00 0.00 40.58 5.36
1285 1314 0.109226 CGGTCTTCTTCCTGTCCGAC 60.109 60.000 0.00 0.00 40.29 4.79
1335 1364 1.387084 CGTTAGCTTTCTCGTGTCAGC 59.613 52.381 0.00 3.44 0.00 4.26
1546 1576 1.443872 GCTATCGGCGGACGTATGG 60.444 63.158 7.21 0.00 44.69 2.74
1558 1588 2.936498 GGACGTATGGTGTCTTGATTGG 59.064 50.000 0.00 0.00 36.58 3.16
1689 1719 7.956403 GCATCGAGATTGAAGATCACATATTTC 59.044 37.037 0.00 0.00 0.00 2.17
1756 1787 0.184451 GTGGCCATGATCATCCTGGT 59.816 55.000 9.72 0.00 35.03 4.00
1826 1857 3.197549 CCACCCAATCCCAAAATAAGTGG 59.802 47.826 0.00 0.00 36.61 4.00
1852 1883 5.893512 GGTTTAATTCAACCAAAACCGAC 57.106 39.130 15.30 0.00 45.12 4.79
1853 1884 4.441744 GGTTTAATTCAACCAAAACCGACG 59.558 41.667 15.30 0.00 45.12 5.12
1854 1885 5.272397 GTTTAATTCAACCAAAACCGACGA 58.728 37.500 0.00 0.00 0.00 4.20
1855 1886 3.343380 AATTCAACCAAAACCGACGAC 57.657 42.857 0.00 0.00 0.00 4.34
1856 1887 1.735386 TTCAACCAAAACCGACGACA 58.265 45.000 0.00 0.00 0.00 4.35
1857 1888 1.735386 TCAACCAAAACCGACGACAA 58.265 45.000 0.00 0.00 0.00 3.18
1858 1889 1.666700 TCAACCAAAACCGACGACAAG 59.333 47.619 0.00 0.00 0.00 3.16
1859 1890 1.018910 AACCAAAACCGACGACAAGG 58.981 50.000 0.00 0.00 0.00 3.61
1860 1891 1.281656 CCAAAACCGACGACAAGGC 59.718 57.895 0.00 0.00 0.00 4.35
1861 1892 1.164041 CCAAAACCGACGACAAGGCT 61.164 55.000 0.00 0.00 0.00 4.58
1862 1893 0.041312 CAAAACCGACGACAAGGCTG 60.041 55.000 0.00 0.00 0.00 4.85
1863 1894 0.179067 AAAACCGACGACAAGGCTGA 60.179 50.000 0.00 0.00 0.00 4.26
1864 1895 0.034896 AAACCGACGACAAGGCTGAT 59.965 50.000 0.00 0.00 0.00 2.90
1865 1896 0.670546 AACCGACGACAAGGCTGATG 60.671 55.000 0.00 0.00 0.00 3.07
1866 1897 1.215382 CCGACGACAAGGCTGATGA 59.785 57.895 0.00 0.00 0.00 2.92
1867 1898 0.803768 CCGACGACAAGGCTGATGAG 60.804 60.000 0.00 0.00 0.00 2.90
1868 1899 1.416813 CGACGACAAGGCTGATGAGC 61.417 60.000 0.00 0.00 45.40 4.26
1877 1908 2.599216 GCTGATGAGCGGCTAAGAC 58.401 57.895 0.60 0.00 45.70 3.01
1878 1909 0.179100 GCTGATGAGCGGCTAAGACA 60.179 55.000 0.60 0.00 45.70 3.41
1879 1910 1.740380 GCTGATGAGCGGCTAAGACAA 60.740 52.381 0.60 0.00 45.70 3.18
1880 1911 1.929836 CTGATGAGCGGCTAAGACAAC 59.070 52.381 0.60 0.00 0.00 3.32
1881 1912 0.924090 GATGAGCGGCTAAGACAACG 59.076 55.000 0.60 0.00 0.00 4.10
1884 1915 4.500568 GCGGCTAAGACAACGCGC 62.501 66.667 5.73 0.00 42.66 6.86
1885 1916 4.191485 CGGCTAAGACAACGCGCG 62.191 66.667 30.96 30.96 0.00 6.86
1886 1917 3.849953 GGCTAAGACAACGCGCGG 61.850 66.667 35.22 19.92 0.00 6.46
1887 1918 2.807895 GCTAAGACAACGCGCGGA 60.808 61.111 35.22 8.67 0.00 5.54
1888 1919 2.789203 GCTAAGACAACGCGCGGAG 61.789 63.158 35.22 26.82 0.00 4.63
1901 1932 4.303853 CGGAGCGGTTCGAGTATG 57.696 61.111 10.42 0.00 0.00 2.39
1902 1933 1.432251 CGGAGCGGTTCGAGTATGT 59.568 57.895 10.42 0.00 0.00 2.29
1903 1934 0.179145 CGGAGCGGTTCGAGTATGTT 60.179 55.000 10.42 0.00 0.00 2.71
1904 1935 1.557651 GGAGCGGTTCGAGTATGTTC 58.442 55.000 0.00 0.00 0.00 3.18
1905 1936 1.134560 GGAGCGGTTCGAGTATGTTCT 59.865 52.381 0.00 0.00 0.00 3.01
1906 1937 2.416972 GGAGCGGTTCGAGTATGTTCTT 60.417 50.000 0.00 0.00 0.00 2.52
1907 1938 3.251571 GAGCGGTTCGAGTATGTTCTTT 58.748 45.455 0.00 0.00 0.00 2.52
1908 1939 3.251571 AGCGGTTCGAGTATGTTCTTTC 58.748 45.455 0.00 0.00 0.00 2.62
1909 1940 3.056749 AGCGGTTCGAGTATGTTCTTTCT 60.057 43.478 0.00 0.00 0.00 2.52
1910 1941 3.303760 GCGGTTCGAGTATGTTCTTTCTC 59.696 47.826 0.00 0.00 0.00 2.87
1911 1942 3.858238 CGGTTCGAGTATGTTCTTTCTCC 59.142 47.826 0.00 0.00 0.00 3.71
1912 1943 4.380655 CGGTTCGAGTATGTTCTTTCTCCT 60.381 45.833 0.00 0.00 0.00 3.69
1913 1944 5.163683 CGGTTCGAGTATGTTCTTTCTCCTA 60.164 44.000 0.00 0.00 0.00 2.94
1914 1945 6.267070 GGTTCGAGTATGTTCTTTCTCCTAG 58.733 44.000 0.00 0.00 0.00 3.02
1915 1946 6.267070 GTTCGAGTATGTTCTTTCTCCTAGG 58.733 44.000 0.82 0.82 0.00 3.02
1916 1947 4.338682 TCGAGTATGTTCTTTCTCCTAGGC 59.661 45.833 2.96 0.00 0.00 3.93
1917 1948 4.339814 CGAGTATGTTCTTTCTCCTAGGCT 59.660 45.833 2.96 0.00 0.00 4.58
1918 1949 5.506649 CGAGTATGTTCTTTCTCCTAGGCTC 60.507 48.000 2.96 0.00 0.00 4.70
1919 1950 5.524535 AGTATGTTCTTTCTCCTAGGCTCT 58.475 41.667 2.96 0.00 0.00 4.09
1920 1951 5.596772 AGTATGTTCTTTCTCCTAGGCTCTC 59.403 44.000 2.96 0.00 0.00 3.20
1921 1952 2.755655 TGTTCTTTCTCCTAGGCTCTCG 59.244 50.000 2.96 0.00 0.00 4.04
1922 1953 1.394618 TCTTTCTCCTAGGCTCTCGC 58.605 55.000 2.96 0.00 0.00 5.03
1923 1954 0.030101 CTTTCTCCTAGGCTCTCGCG 59.970 60.000 2.96 0.00 36.88 5.87
1924 1955 0.393944 TTTCTCCTAGGCTCTCGCGA 60.394 55.000 9.26 9.26 36.88 5.87
1925 1956 1.096386 TTCTCCTAGGCTCTCGCGAC 61.096 60.000 3.71 0.00 36.88 5.19
1926 1957 1.525077 CTCCTAGGCTCTCGCGACT 60.525 63.158 3.71 2.89 36.88 4.18
1927 1958 1.503818 CTCCTAGGCTCTCGCGACTC 61.504 65.000 3.71 0.00 36.88 3.36
1928 1959 2.548295 CCTAGGCTCTCGCGACTCC 61.548 68.421 3.71 6.57 36.88 3.85
1929 1960 2.516460 TAGGCTCTCGCGACTCCC 60.516 66.667 3.71 5.29 36.88 4.30
1930 1961 2.951475 CTAGGCTCTCGCGACTCCCT 62.951 65.000 3.71 13.13 36.88 4.20
1931 1962 2.553765 TAGGCTCTCGCGACTCCCTT 62.554 60.000 18.33 6.67 36.88 3.95
1932 1963 2.202676 GCTCTCGCGACTCCCTTG 60.203 66.667 3.71 0.00 0.00 3.61
1933 1964 2.202676 CTCTCGCGACTCCCTTGC 60.203 66.667 3.71 0.00 0.00 4.01
1940 1971 4.070552 GACTCCCTTGCGAGCGGT 62.071 66.667 0.00 0.00 32.79 5.68
1941 1972 4.379243 ACTCCCTTGCGAGCGGTG 62.379 66.667 0.00 2.53 32.79 4.94
1945 1976 3.423154 CCTTGCGAGCGGTGGTTC 61.423 66.667 0.00 0.00 0.00 3.62
1946 1977 3.423154 CTTGCGAGCGGTGGTTCC 61.423 66.667 0.00 0.00 0.00 3.62
1947 1978 3.883744 CTTGCGAGCGGTGGTTCCT 62.884 63.158 0.00 0.00 0.00 3.36
1948 1979 2.501223 CTTGCGAGCGGTGGTTCCTA 62.501 60.000 0.00 0.00 0.00 2.94
1949 1980 2.202756 GCGAGCGGTGGTTCCTAG 60.203 66.667 0.00 0.00 0.00 3.02
1950 1981 2.494918 CGAGCGGTGGTTCCTAGG 59.505 66.667 0.82 0.82 0.00 3.02
1951 1982 2.901042 GAGCGGTGGTTCCTAGGG 59.099 66.667 9.46 0.00 0.00 3.53
1952 1983 1.684734 GAGCGGTGGTTCCTAGGGA 60.685 63.158 9.46 0.00 0.00 4.20
1953 1984 1.003051 AGCGGTGGTTCCTAGGGAT 59.997 57.895 9.46 0.00 0.00 3.85
1954 1985 0.620700 AGCGGTGGTTCCTAGGGATT 60.621 55.000 9.46 0.00 0.00 3.01
1955 1986 0.463833 GCGGTGGTTCCTAGGGATTG 60.464 60.000 9.46 0.00 0.00 2.67
1956 1987 1.200519 CGGTGGTTCCTAGGGATTGA 58.799 55.000 9.46 0.00 0.00 2.57
1957 1988 1.768870 CGGTGGTTCCTAGGGATTGAT 59.231 52.381 9.46 0.00 0.00 2.57
1958 1989 2.224305 CGGTGGTTCCTAGGGATTGATC 60.224 54.545 9.46 0.00 0.00 2.92
1959 1990 3.049344 GGTGGTTCCTAGGGATTGATCT 58.951 50.000 9.46 0.00 0.00 2.75
1960 1991 3.071747 GGTGGTTCCTAGGGATTGATCTC 59.928 52.174 9.46 0.00 0.00 2.75
1961 1992 3.071747 GTGGTTCCTAGGGATTGATCTCC 59.928 52.174 9.46 0.00 34.31 3.71
1962 1993 2.300437 GGTTCCTAGGGATTGATCTCCG 59.700 54.545 9.46 0.00 36.05 4.63
1963 1994 2.966516 GTTCCTAGGGATTGATCTCCGT 59.033 50.000 9.46 0.00 36.05 4.69
1964 1995 2.598565 TCCTAGGGATTGATCTCCGTG 58.401 52.381 9.46 0.00 36.05 4.94
1965 1996 2.177016 TCCTAGGGATTGATCTCCGTGA 59.823 50.000 9.46 0.00 36.05 4.35
1966 1997 2.560542 CCTAGGGATTGATCTCCGTGAG 59.439 54.545 0.00 0.00 36.05 3.51
1979 2010 3.226884 CGTGAGGGTCCGTGATTTT 57.773 52.632 0.00 0.00 0.00 1.82
1980 2011 0.796312 CGTGAGGGTCCGTGATTTTG 59.204 55.000 0.00 0.00 0.00 2.44
1981 2012 1.606994 CGTGAGGGTCCGTGATTTTGA 60.607 52.381 0.00 0.00 0.00 2.69
1982 2013 2.711542 GTGAGGGTCCGTGATTTTGAT 58.288 47.619 0.00 0.00 0.00 2.57
1983 2014 3.081804 GTGAGGGTCCGTGATTTTGATT 58.918 45.455 0.00 0.00 0.00 2.57
1984 2015 3.127030 GTGAGGGTCCGTGATTTTGATTC 59.873 47.826 0.00 0.00 0.00 2.52
1985 2016 2.351726 GAGGGTCCGTGATTTTGATTCG 59.648 50.000 0.00 0.00 0.00 3.34
1986 2017 1.202143 GGGTCCGTGATTTTGATTCGC 60.202 52.381 0.00 0.00 0.00 4.70
1987 2018 1.529010 GGTCCGTGATTTTGATTCGCG 60.529 52.381 0.00 0.00 44.44 5.87
1990 2021 2.737467 CGTGATTTTGATTCGCGGAT 57.263 45.000 6.13 1.05 41.94 4.18
1991 2022 2.629022 CGTGATTTTGATTCGCGGATC 58.371 47.619 20.85 20.85 41.94 3.36
1992 2023 2.599848 CGTGATTTTGATTCGCGGATCC 60.600 50.000 24.33 9.16 41.94 3.36
1993 2024 2.354510 GTGATTTTGATTCGCGGATCCA 59.645 45.455 24.33 11.31 0.00 3.41
1994 2025 3.013219 TGATTTTGATTCGCGGATCCAA 58.987 40.909 24.33 17.05 0.00 3.53
1995 2026 3.631686 TGATTTTGATTCGCGGATCCAAT 59.368 39.130 24.33 20.52 0.00 3.16
1996 2027 3.691049 TTTTGATTCGCGGATCCAATC 57.309 42.857 24.33 16.39 0.00 2.67
1997 2028 2.620251 TTGATTCGCGGATCCAATCT 57.380 45.000 24.33 0.00 0.00 2.40
1998 2029 2.620251 TGATTCGCGGATCCAATCTT 57.380 45.000 24.33 0.00 0.00 2.40
1999 2030 2.917933 TGATTCGCGGATCCAATCTTT 58.082 42.857 24.33 0.00 0.00 2.52
2000 2031 2.872245 TGATTCGCGGATCCAATCTTTC 59.128 45.455 24.33 0.00 0.00 2.62
2001 2032 1.663695 TTCGCGGATCCAATCTTTCC 58.336 50.000 13.41 0.00 0.00 3.13
2002 2033 0.830648 TCGCGGATCCAATCTTTCCT 59.169 50.000 13.41 0.00 0.00 3.36
2003 2034 1.209504 TCGCGGATCCAATCTTTCCTT 59.790 47.619 13.41 0.00 0.00 3.36
2004 2035 1.599542 CGCGGATCCAATCTTTCCTTC 59.400 52.381 13.41 0.00 0.00 3.46
2005 2036 1.950216 GCGGATCCAATCTTTCCTTCC 59.050 52.381 13.41 0.00 0.00 3.46
2006 2037 2.576615 CGGATCCAATCTTTCCTTCCC 58.423 52.381 13.41 0.00 0.00 3.97
2007 2038 2.173569 CGGATCCAATCTTTCCTTCCCT 59.826 50.000 13.41 0.00 0.00 4.20
2008 2039 3.560105 GGATCCAATCTTTCCTTCCCTG 58.440 50.000 6.95 0.00 0.00 4.45
2009 2040 3.053320 GGATCCAATCTTTCCTTCCCTGT 60.053 47.826 6.95 0.00 0.00 4.00
2010 2041 3.721087 TCCAATCTTTCCTTCCCTGTC 57.279 47.619 0.00 0.00 0.00 3.51
2011 2042 2.308866 TCCAATCTTTCCTTCCCTGTCC 59.691 50.000 0.00 0.00 0.00 4.02
2012 2043 2.310052 CCAATCTTTCCTTCCCTGTCCT 59.690 50.000 0.00 0.00 0.00 3.85
2013 2044 3.350833 CAATCTTTCCTTCCCTGTCCTG 58.649 50.000 0.00 0.00 0.00 3.86
2014 2045 0.693049 TCTTTCCTTCCCTGTCCTGC 59.307 55.000 0.00 0.00 0.00 4.85
2015 2046 0.695347 CTTTCCTTCCCTGTCCTGCT 59.305 55.000 0.00 0.00 0.00 4.24
2016 2047 0.401738 TTTCCTTCCCTGTCCTGCTG 59.598 55.000 0.00 0.00 0.00 4.41
2017 2048 0.473694 TTCCTTCCCTGTCCTGCTGA 60.474 55.000 0.00 0.00 0.00 4.26
2018 2049 0.252881 TCCTTCCCTGTCCTGCTGAT 60.253 55.000 0.00 0.00 0.00 2.90
2019 2050 0.179936 CCTTCCCTGTCCTGCTGATC 59.820 60.000 0.00 0.00 0.00 2.92
2020 2051 0.179936 CTTCCCTGTCCTGCTGATCC 59.820 60.000 0.00 0.00 0.00 3.36
2021 2052 1.274703 TTCCCTGTCCTGCTGATCCC 61.275 60.000 0.00 0.00 0.00 3.85
2022 2053 1.692042 CCCTGTCCTGCTGATCCCT 60.692 63.158 0.00 0.00 0.00 4.20
2023 2054 1.694133 CCCTGTCCTGCTGATCCCTC 61.694 65.000 0.00 0.00 0.00 4.30
2024 2055 1.694133 CCTGTCCTGCTGATCCCTCC 61.694 65.000 0.00 0.00 0.00 4.30
2025 2056 0.690411 CTGTCCTGCTGATCCCTCCT 60.690 60.000 0.00 0.00 0.00 3.69
2026 2057 0.979709 TGTCCTGCTGATCCCTCCTG 60.980 60.000 0.00 0.00 0.00 3.86
2027 2058 2.068821 TCCTGCTGATCCCTCCTGC 61.069 63.158 0.00 0.00 0.00 4.85
2028 2059 2.372890 CCTGCTGATCCCTCCTGCA 61.373 63.158 0.00 0.00 0.00 4.41
2029 2060 1.706995 CCTGCTGATCCCTCCTGCAT 61.707 60.000 0.00 0.00 32.16 3.96
2030 2061 0.250381 CTGCTGATCCCTCCTGCATC 60.250 60.000 0.00 0.00 32.16 3.91
2031 2062 0.984432 TGCTGATCCCTCCTGCATCA 60.984 55.000 0.00 0.00 0.00 3.07
2032 2063 0.400975 GCTGATCCCTCCTGCATCAT 59.599 55.000 0.00 0.00 0.00 2.45
2033 2064 1.611148 GCTGATCCCTCCTGCATCATC 60.611 57.143 0.00 0.00 0.00 2.92
2034 2065 1.979308 CTGATCCCTCCTGCATCATCT 59.021 52.381 0.00 0.00 0.00 2.90
2035 2066 1.697982 TGATCCCTCCTGCATCATCTG 59.302 52.381 0.00 0.00 0.00 2.90
2036 2067 1.003349 GATCCCTCCTGCATCATCTGG 59.997 57.143 0.00 0.00 0.00 3.86
2037 2068 1.058428 TCCCTCCTGCATCATCTGGG 61.058 60.000 0.00 0.00 34.76 4.45
2038 2069 1.351080 CCCTCCTGCATCATCTGGGT 61.351 60.000 0.00 0.00 0.00 4.51
2039 2070 0.108207 CCTCCTGCATCATCTGGGTC 59.892 60.000 0.00 0.00 0.00 4.46
2040 2071 0.108207 CTCCTGCATCATCTGGGTCC 59.892 60.000 0.00 0.00 0.00 4.46
2041 2072 1.227764 CCTGCATCATCTGGGTCCG 60.228 63.158 0.00 0.00 0.00 4.79
2042 2073 1.227764 CTGCATCATCTGGGTCCGG 60.228 63.158 0.00 0.00 0.00 5.14
2043 2074 2.111878 GCATCATCTGGGTCCGGG 59.888 66.667 0.00 0.00 0.00 5.73
2044 2075 2.746375 GCATCATCTGGGTCCGGGT 61.746 63.158 0.00 0.00 0.00 5.28
2045 2076 1.407656 GCATCATCTGGGTCCGGGTA 61.408 60.000 0.00 0.00 0.00 3.69
2046 2077 1.128200 CATCATCTGGGTCCGGGTAA 58.872 55.000 0.00 0.00 0.00 2.85
2047 2078 1.699634 CATCATCTGGGTCCGGGTAAT 59.300 52.381 0.00 0.00 0.00 1.89
2048 2079 1.887797 TCATCTGGGTCCGGGTAATT 58.112 50.000 0.00 0.00 0.00 1.40
2049 2080 1.766496 TCATCTGGGTCCGGGTAATTC 59.234 52.381 0.00 0.00 0.00 2.17
2050 2081 1.137697 ATCTGGGTCCGGGTAATTCC 58.862 55.000 0.00 0.00 0.00 3.01
2051 2082 0.043637 TCTGGGTCCGGGTAATTCCT 59.956 55.000 0.00 0.00 36.25 3.36
2052 2083 0.468648 CTGGGTCCGGGTAATTCCTC 59.531 60.000 0.00 0.00 36.25 3.71
2053 2084 0.984432 TGGGTCCGGGTAATTCCTCC 60.984 60.000 0.00 0.00 36.25 4.30
2054 2085 0.693430 GGGTCCGGGTAATTCCTCCT 60.693 60.000 0.00 0.00 36.25 3.69
2055 2086 0.757512 GGTCCGGGTAATTCCTCCTC 59.242 60.000 0.00 0.00 36.25 3.71
2056 2087 1.691801 GGTCCGGGTAATTCCTCCTCT 60.692 57.143 0.00 0.00 36.25 3.69
2057 2088 1.687660 GTCCGGGTAATTCCTCCTCTC 59.312 57.143 0.00 0.00 36.25 3.20
2058 2089 0.674534 CCGGGTAATTCCTCCTCTCG 59.325 60.000 0.00 0.00 36.25 4.04
2059 2090 0.032267 CGGGTAATTCCTCCTCTCGC 59.968 60.000 0.00 0.00 36.25 5.03
2060 2091 1.415200 GGGTAATTCCTCCTCTCGCT 58.585 55.000 0.00 0.00 36.25 4.93
2061 2092 1.069358 GGGTAATTCCTCCTCTCGCTG 59.931 57.143 0.00 0.00 36.25 5.18
2062 2093 1.539280 GGTAATTCCTCCTCTCGCTGC 60.539 57.143 0.00 0.00 0.00 5.25
2063 2094 1.410882 GTAATTCCTCCTCTCGCTGCT 59.589 52.381 0.00 0.00 0.00 4.24
2064 2095 0.177604 AATTCCTCCTCTCGCTGCTG 59.822 55.000 0.00 0.00 0.00 4.41
2065 2096 0.975040 ATTCCTCCTCTCGCTGCTGT 60.975 55.000 0.00 0.00 0.00 4.40
2066 2097 1.188219 TTCCTCCTCTCGCTGCTGTT 61.188 55.000 0.00 0.00 0.00 3.16
2067 2098 1.153667 CCTCCTCTCGCTGCTGTTC 60.154 63.158 0.00 0.00 0.00 3.18
2068 2099 1.515952 CTCCTCTCGCTGCTGTTCG 60.516 63.158 0.00 0.00 0.00 3.95
2069 2100 2.507992 CCTCTCGCTGCTGTTCGG 60.508 66.667 0.00 0.00 0.00 4.30
2070 2101 2.507992 CTCTCGCTGCTGTTCGGG 60.508 66.667 0.00 0.00 0.00 5.14
2071 2102 3.997064 CTCTCGCTGCTGTTCGGGG 62.997 68.421 0.00 0.00 35.50 5.73
2076 2107 2.892425 CTGCTGTTCGGGGCGATC 60.892 66.667 0.00 0.00 35.23 3.69
2077 2108 4.467084 TGCTGTTCGGGGCGATCC 62.467 66.667 0.00 0.00 35.23 3.36
2078 2109 4.467084 GCTGTTCGGGGCGATCCA 62.467 66.667 0.00 0.00 35.23 3.41
2079 2110 2.202932 CTGTTCGGGGCGATCCAG 60.203 66.667 0.00 0.00 35.23 3.86
2080 2111 3.740128 CTGTTCGGGGCGATCCAGG 62.740 68.421 0.00 0.00 35.23 4.45
2081 2112 4.547367 GTTCGGGGCGATCCAGGG 62.547 72.222 0.00 0.00 35.23 4.45
2089 2120 3.470888 CGATCCAGGGGCGTTCCT 61.471 66.667 0.00 0.00 37.71 3.36
2090 2121 2.998949 GATCCAGGGGCGTTCCTT 59.001 61.111 0.00 0.00 34.31 3.36
2091 2122 1.452108 GATCCAGGGGCGTTCCTTG 60.452 63.158 2.87 2.87 41.81 3.61
2092 2123 2.198304 GATCCAGGGGCGTTCCTTGT 62.198 60.000 7.89 0.00 40.67 3.16
2093 2124 0.912487 ATCCAGGGGCGTTCCTTGTA 60.912 55.000 7.89 0.00 40.67 2.41
2094 2125 0.912487 TCCAGGGGCGTTCCTTGTAT 60.912 55.000 7.89 0.00 40.67 2.29
2095 2126 0.463833 CCAGGGGCGTTCCTTGTATC 60.464 60.000 7.89 0.00 40.67 2.24
2096 2127 0.810031 CAGGGGCGTTCCTTGTATCG 60.810 60.000 0.00 0.00 37.79 2.92
2097 2128 2.178235 GGGGCGTTCCTTGTATCGC 61.178 63.158 0.00 0.00 46.42 4.58
2098 2129 1.153429 GGGCGTTCCTTGTATCGCT 60.153 57.895 8.18 0.00 46.37 4.93
2099 2130 1.429148 GGGCGTTCCTTGTATCGCTG 61.429 60.000 8.18 0.00 46.37 5.18
2100 2131 1.348594 GCGTTCCTTGTATCGCTGC 59.651 57.895 0.00 0.00 44.28 5.25
2101 2132 2.006772 CGTTCCTTGTATCGCTGCC 58.993 57.895 0.00 0.00 0.00 4.85
2102 2133 1.429148 CGTTCCTTGTATCGCTGCCC 61.429 60.000 0.00 0.00 0.00 5.36
2103 2134 0.392461 GTTCCTTGTATCGCTGCCCA 60.392 55.000 0.00 0.00 0.00 5.36
2104 2135 0.392461 TTCCTTGTATCGCTGCCCAC 60.392 55.000 0.00 0.00 0.00 4.61
2105 2136 1.819632 CCTTGTATCGCTGCCCACC 60.820 63.158 0.00 0.00 0.00 4.61
2106 2137 1.819632 CTTGTATCGCTGCCCACCC 60.820 63.158 0.00 0.00 0.00 4.61
2107 2138 2.257409 CTTGTATCGCTGCCCACCCT 62.257 60.000 0.00 0.00 0.00 4.34
2108 2139 1.847798 TTGTATCGCTGCCCACCCTT 61.848 55.000 0.00 0.00 0.00 3.95
2109 2140 1.819632 GTATCGCTGCCCACCCTTG 60.820 63.158 0.00 0.00 0.00 3.61
2110 2141 3.042733 TATCGCTGCCCACCCTTGG 62.043 63.158 0.00 0.00 43.50 3.61
2118 2149 4.290622 CCACCCTTGGCAGTGGCT 62.291 66.667 18.53 0.00 46.55 4.75
2119 2150 2.987547 CACCCTTGGCAGTGGCTG 60.988 66.667 18.53 10.38 40.87 4.85
2120 2151 4.290622 ACCCTTGGCAGTGGCTGG 62.291 66.667 18.53 18.12 40.87 4.85
2121 2152 4.290622 CCCTTGGCAGTGGCTGGT 62.291 66.667 18.53 0.00 40.87 4.00
2122 2153 2.674380 CCTTGGCAGTGGCTGGTC 60.674 66.667 18.53 0.00 40.87 4.02
2123 2154 3.052082 CTTGGCAGTGGCTGGTCG 61.052 66.667 18.53 0.00 40.87 4.79
2124 2155 3.535629 CTTGGCAGTGGCTGGTCGA 62.536 63.158 18.53 0.00 40.87 4.20
2125 2156 3.535629 TTGGCAGTGGCTGGTCGAG 62.536 63.158 18.53 0.00 40.87 4.04
2126 2157 4.767255 GGCAGTGGCTGGTCGAGG 62.767 72.222 9.90 0.00 40.87 4.63
2127 2158 4.767255 GCAGTGGCTGGTCGAGGG 62.767 72.222 0.00 0.00 36.96 4.30
2128 2159 3.314331 CAGTGGCTGGTCGAGGGT 61.314 66.667 0.00 0.00 0.00 4.34
2129 2160 2.526873 AGTGGCTGGTCGAGGGTT 60.527 61.111 0.00 0.00 0.00 4.11
2130 2161 2.358737 GTGGCTGGTCGAGGGTTG 60.359 66.667 0.00 0.00 0.00 3.77
2131 2162 4.329545 TGGCTGGTCGAGGGTTGC 62.330 66.667 0.00 0.00 0.00 4.17
2134 2165 4.760047 CTGGTCGAGGGTTGCCGG 62.760 72.222 0.00 0.00 0.00 6.13
2136 2167 4.324991 GGTCGAGGGTTGCCGGTT 62.325 66.667 1.90 0.00 0.00 4.44
2137 2168 2.741211 GTCGAGGGTTGCCGGTTC 60.741 66.667 1.90 0.00 0.00 3.62
2138 2169 2.920912 TCGAGGGTTGCCGGTTCT 60.921 61.111 1.90 0.00 0.00 3.01
2139 2170 2.434359 CGAGGGTTGCCGGTTCTC 60.434 66.667 1.90 2.60 0.00 2.87
2140 2171 2.943978 CGAGGGTTGCCGGTTCTCT 61.944 63.158 1.90 0.00 0.00 3.10
2141 2172 1.079057 GAGGGTTGCCGGTTCTCTC 60.079 63.158 1.90 5.04 0.00 3.20
2142 2173 1.827399 GAGGGTTGCCGGTTCTCTCA 61.827 60.000 1.90 0.00 0.00 3.27
2143 2174 1.201429 AGGGTTGCCGGTTCTCTCAT 61.201 55.000 1.90 0.00 0.00 2.90
2144 2175 1.026718 GGGTTGCCGGTTCTCTCATG 61.027 60.000 1.90 0.00 0.00 3.07
2145 2176 1.026718 GGTTGCCGGTTCTCTCATGG 61.027 60.000 1.90 0.00 0.00 3.66
2146 2177 1.377202 TTGCCGGTTCTCTCATGGC 60.377 57.895 1.90 0.00 45.91 4.40
2147 2178 2.892425 GCCGGTTCTCTCATGGCG 60.892 66.667 1.90 0.00 35.77 5.69
2148 2179 2.202932 CCGGTTCTCTCATGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
2149 2180 2.721167 CCGGTTCTCTCATGGCGGA 61.721 63.158 0.00 0.00 0.00 5.54
2150 2181 1.227089 CGGTTCTCTCATGGCGGAG 60.227 63.158 0.00 0.00 36.21 4.63
2151 2182 1.144936 GGTTCTCTCATGGCGGAGG 59.855 63.158 6.20 0.00 35.58 4.30
2152 2183 1.617947 GGTTCTCTCATGGCGGAGGT 61.618 60.000 6.20 0.00 35.58 3.85
2153 2184 0.179097 GTTCTCTCATGGCGGAGGTC 60.179 60.000 6.20 0.00 35.58 3.85
2154 2185 1.330655 TTCTCTCATGGCGGAGGTCC 61.331 60.000 6.20 0.00 35.58 4.46
2164 2195 2.282446 GGAGGTCCGAGATGGGGA 59.718 66.667 0.00 0.00 38.76 4.81
2165 2196 1.834822 GGAGGTCCGAGATGGGGAG 60.835 68.421 0.00 0.00 38.76 4.30
2166 2197 1.230497 GAGGTCCGAGATGGGGAGA 59.770 63.158 0.00 0.00 38.76 3.71
2167 2198 0.825840 GAGGTCCGAGATGGGGAGAG 60.826 65.000 0.00 0.00 38.76 3.20
2168 2199 1.834822 GGTCCGAGATGGGGAGAGG 60.835 68.421 0.00 0.00 38.76 3.69
2169 2200 1.230497 GTCCGAGATGGGGAGAGGA 59.770 63.158 0.00 0.00 38.76 3.71
2170 2201 0.825840 GTCCGAGATGGGGAGAGGAG 60.826 65.000 0.00 0.00 38.76 3.69
2171 2202 2.206536 CCGAGATGGGGAGAGGAGC 61.207 68.421 0.00 0.00 0.00 4.70
2172 2203 2.560119 CGAGATGGGGAGAGGAGCG 61.560 68.421 0.00 0.00 0.00 5.03
2173 2204 2.841988 AGATGGGGAGAGGAGCGC 60.842 66.667 0.00 0.00 0.00 5.92
2174 2205 2.841988 GATGGGGAGAGGAGCGCT 60.842 66.667 11.27 11.27 0.00 5.92
2175 2206 3.160047 ATGGGGAGAGGAGCGCTG 61.160 66.667 18.48 0.00 0.00 5.18
2180 2211 3.780173 GAGAGGAGCGCTGCCCTT 61.780 66.667 26.33 11.33 31.35 3.95
2181 2212 4.093291 AGAGGAGCGCTGCCCTTG 62.093 66.667 26.33 0.00 31.35 3.61
2182 2213 4.087892 GAGGAGCGCTGCCCTTGA 62.088 66.667 26.33 0.00 31.35 3.02
2183 2214 4.093291 AGGAGCGCTGCCCTTGAG 62.093 66.667 26.33 0.00 0.00 3.02
2194 2225 2.359975 CCTTGAGGGCGTGGTTCC 60.360 66.667 0.00 0.00 0.00 3.62
2195 2226 2.750350 CTTGAGGGCGTGGTTCCT 59.250 61.111 0.00 0.00 35.82 3.36
2196 2227 1.672356 CTTGAGGGCGTGGTTCCTG 60.672 63.158 0.00 0.00 32.74 3.86
2197 2228 3.842925 TTGAGGGCGTGGTTCCTGC 62.843 63.158 0.00 0.00 32.74 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.250143 AGAAGGTGTTATTCTTCCAAACATTT 57.750 30.769 0.00 0.00 39.97 2.32
96 97 7.992608 TGCACATAAGTTGGATATAGATGTTGT 59.007 33.333 0.00 0.00 0.00 3.32
128 129 8.712363 GCGTCTACATGTATGTTTGATATGAAT 58.288 33.333 5.91 0.00 41.97 2.57
182 183 2.602267 TTCGTCCGCCTCCAAGGA 60.602 61.111 0.00 0.00 37.67 3.36
185 186 2.646175 CCTCTTCGTCCGCCTCCAA 61.646 63.158 0.00 0.00 0.00 3.53
199 201 2.636830 CAAGCAATCCATTCGACCTCT 58.363 47.619 0.00 0.00 0.00 3.69
382 385 4.336889 TGTGACTTTCGTCTTTGGATCT 57.663 40.909 0.00 0.00 40.86 2.75
404 407 0.708802 AGTCCTCCTTCGTCCCCTTA 59.291 55.000 0.00 0.00 0.00 2.69
417 420 3.752222 TGTCACTCTCTTTCGTAGTCCTC 59.248 47.826 0.00 0.00 0.00 3.71
418 421 3.752665 TGTCACTCTCTTTCGTAGTCCT 58.247 45.455 0.00 0.00 0.00 3.85
419 422 4.023021 AGTTGTCACTCTCTTTCGTAGTCC 60.023 45.833 0.00 0.00 0.00 3.85
424 428 3.256136 CCCTAGTTGTCACTCTCTTTCGT 59.744 47.826 0.00 0.00 34.06 3.85
450 454 2.438411 AGAGAGTGACTAGTTCGGTGG 58.562 52.381 0.00 0.00 0.00 4.61
455 459 3.259625 AGGGCAAAGAGAGTGACTAGTTC 59.740 47.826 0.00 0.00 0.00 3.01
482 486 4.746309 GTGGATGGCTGGGCTGCA 62.746 66.667 0.50 0.00 34.04 4.41
585 589 0.539669 GTGCTGGTTTTAGTGGGGCT 60.540 55.000 0.00 0.00 0.00 5.19
621 625 0.869880 CGCTATTGTCATCGACCGCA 60.870 55.000 0.00 0.00 0.00 5.69
651 655 7.175797 TGTCTCTCTATAGAAGTTGGAGTCAA 58.824 38.462 12.99 2.09 0.00 3.18
652 656 6.722328 TGTCTCTCTATAGAAGTTGGAGTCA 58.278 40.000 12.99 11.45 0.00 3.41
656 660 8.260818 CCATTTTGTCTCTCTATAGAAGTTGGA 58.739 37.037 3.57 0.00 0.00 3.53
703 708 9.388506 CAATGAGGAGAGTAATGAATAGTGTTT 57.611 33.333 0.00 0.00 0.00 2.83
704 709 7.989741 CCAATGAGGAGAGTAATGAATAGTGTT 59.010 37.037 0.00 0.00 41.22 3.32
705 710 7.126421 ACCAATGAGGAGAGTAATGAATAGTGT 59.874 37.037 0.00 0.00 41.22 3.55
717 722 3.454082 GGATCAAGACCAATGAGGAGAGT 59.546 47.826 0.00 0.00 41.22 3.24
727 732 0.400213 AGCCGTTGGATCAAGACCAA 59.600 50.000 0.00 0.00 43.84 3.67
728 733 0.036388 GAGCCGTTGGATCAAGACCA 60.036 55.000 0.00 0.00 38.12 4.02
790 795 1.700029 CGTCCGACCGTTTGATTCG 59.300 57.895 0.00 0.00 0.00 3.34
791 796 1.012486 AGCGTCCGACCGTTTGATTC 61.012 55.000 0.00 0.00 0.00 2.52
793 798 1.445582 GAGCGTCCGACCGTTTGAT 60.446 57.895 0.00 0.00 0.00 2.57
794 799 2.049802 GAGCGTCCGACCGTTTGA 60.050 61.111 0.00 0.00 0.00 2.69
795 800 3.110178 GGAGCGTCCGACCGTTTG 61.110 66.667 0.00 0.00 0.00 2.93
817 825 5.369833 TGTCACGACCTTCTTCCATAAAAA 58.630 37.500 0.00 0.00 0.00 1.94
820 828 4.610605 TTGTCACGACCTTCTTCCATAA 57.389 40.909 0.00 0.00 0.00 1.90
821 829 4.382685 GGATTGTCACGACCTTCTTCCATA 60.383 45.833 0.00 0.00 0.00 2.74
822 830 3.600388 GATTGTCACGACCTTCTTCCAT 58.400 45.455 0.00 0.00 0.00 3.41
823 831 2.289444 GGATTGTCACGACCTTCTTCCA 60.289 50.000 0.00 0.00 0.00 3.53
824 832 2.289444 TGGATTGTCACGACCTTCTTCC 60.289 50.000 0.00 0.00 0.00 3.46
825 833 3.040147 TGGATTGTCACGACCTTCTTC 57.960 47.619 0.00 0.00 0.00 2.87
826 834 3.485463 TTGGATTGTCACGACCTTCTT 57.515 42.857 0.00 0.00 0.00 2.52
827 835 3.600388 GATTGGATTGTCACGACCTTCT 58.400 45.455 0.00 0.00 0.00 2.85
828 836 2.678336 GGATTGGATTGTCACGACCTTC 59.322 50.000 0.00 0.00 0.00 3.46
829 837 2.305927 AGGATTGGATTGTCACGACCTT 59.694 45.455 0.00 0.00 0.00 3.50
830 838 1.909302 AGGATTGGATTGTCACGACCT 59.091 47.619 0.00 0.00 0.00 3.85
831 839 2.403252 AGGATTGGATTGTCACGACC 57.597 50.000 0.00 0.00 0.00 4.79
832 840 3.747099 CAAGGATTGGATTGTCACGAC 57.253 47.619 0.00 0.00 43.94 4.34
845 853 3.914426 ATTACTCCAGCGACAAGGATT 57.086 42.857 0.00 0.00 32.53 3.01
846 854 3.535561 CAATTACTCCAGCGACAAGGAT 58.464 45.455 0.00 0.00 32.53 3.24
847 855 2.354704 CCAATTACTCCAGCGACAAGGA 60.355 50.000 0.00 0.00 0.00 3.36
848 856 2.009774 CCAATTACTCCAGCGACAAGG 58.990 52.381 0.00 0.00 0.00 3.61
849 857 2.972625 TCCAATTACTCCAGCGACAAG 58.027 47.619 0.00 0.00 0.00 3.16
850 858 3.627395 ATCCAATTACTCCAGCGACAA 57.373 42.857 0.00 0.00 0.00 3.18
851 859 3.055458 TGAATCCAATTACTCCAGCGACA 60.055 43.478 0.00 0.00 0.00 4.35
852 860 3.309954 GTGAATCCAATTACTCCAGCGAC 59.690 47.826 0.00 0.00 0.00 5.19
853 861 3.055458 TGTGAATCCAATTACTCCAGCGA 60.055 43.478 0.00 0.00 0.00 4.93
854 862 3.063997 GTGTGAATCCAATTACTCCAGCG 59.936 47.826 0.00 0.00 0.00 5.18
855 863 3.063997 CGTGTGAATCCAATTACTCCAGC 59.936 47.826 0.00 0.00 0.00 4.85
856 864 4.330074 GTCGTGTGAATCCAATTACTCCAG 59.670 45.833 0.00 0.00 0.00 3.86
857 865 4.250464 GTCGTGTGAATCCAATTACTCCA 58.750 43.478 0.00 0.00 0.00 3.86
860 868 4.553330 AGGTCGTGTGAATCCAATTACT 57.447 40.909 0.00 0.00 0.00 2.24
872 880 3.328382 TTTATGGGAGAAGGTCGTGTG 57.672 47.619 0.00 0.00 0.00 3.82
873 881 5.671493 CTTATTTATGGGAGAAGGTCGTGT 58.329 41.667 0.00 0.00 0.00 4.49
876 884 4.511826 GTGCTTATTTATGGGAGAAGGTCG 59.488 45.833 0.00 0.00 0.00 4.79
898 910 2.431601 GCGTCTCTGCTTCGCTGT 60.432 61.111 0.00 0.00 45.29 4.40
906 933 1.502163 AAAGTGCTGTGCGTCTCTGC 61.502 55.000 0.00 0.00 0.00 4.26
1050 1079 2.750350 CCTGACTTGCGGTCCCTT 59.250 61.111 7.09 0.00 43.89 3.95
1267 1296 0.246910 GGTCGGACAGGAAGAAGACC 59.753 60.000 10.76 0.00 40.85 3.85
1285 1314 2.825836 GTGCAGGCTTGGGATCGG 60.826 66.667 0.00 0.00 0.00 4.18
1361 1390 3.906720 ATACGTACATGCCAAAGAGGT 57.093 42.857 0.00 0.00 40.61 3.85
1546 1576 2.774439 AAACGCACCAATCAAGACAC 57.226 45.000 0.00 0.00 0.00 3.67
1558 1588 3.064931 ACTAAGCAAGGACTAAACGCAC 58.935 45.455 0.00 0.00 0.00 5.34
1689 1719 5.982890 ATTTTCCAAGTATGTGAAGGTGG 57.017 39.130 0.00 0.00 0.00 4.61
1851 1882 1.446792 CGCTCATCAGCCTTGTCGT 60.447 57.895 0.00 0.00 43.56 4.34
1852 1883 2.169789 CCGCTCATCAGCCTTGTCG 61.170 63.158 0.00 0.00 43.56 4.35
1853 1884 2.467826 GCCGCTCATCAGCCTTGTC 61.468 63.158 0.00 0.00 43.56 3.18
1854 1885 1.617018 TAGCCGCTCATCAGCCTTGT 61.617 55.000 0.00 0.00 43.56 3.16
1855 1886 0.462581 TTAGCCGCTCATCAGCCTTG 60.463 55.000 0.00 0.00 43.56 3.61
1856 1887 0.179062 CTTAGCCGCTCATCAGCCTT 60.179 55.000 0.00 0.00 43.56 4.35
1857 1888 1.045350 TCTTAGCCGCTCATCAGCCT 61.045 55.000 0.00 0.00 43.56 4.58
1858 1889 0.878086 GTCTTAGCCGCTCATCAGCC 60.878 60.000 0.00 0.00 43.56 4.85
1859 1890 0.179100 TGTCTTAGCCGCTCATCAGC 60.179 55.000 0.00 0.00 42.96 4.26
1860 1891 1.929836 GTTGTCTTAGCCGCTCATCAG 59.070 52.381 0.00 0.00 0.00 2.90
1861 1892 1.735700 CGTTGTCTTAGCCGCTCATCA 60.736 52.381 0.00 0.00 0.00 3.07
1862 1893 0.924090 CGTTGTCTTAGCCGCTCATC 59.076 55.000 0.00 0.00 0.00 2.92
1863 1894 1.084370 GCGTTGTCTTAGCCGCTCAT 61.084 55.000 0.00 0.00 42.66 2.90
1864 1895 1.736645 GCGTTGTCTTAGCCGCTCA 60.737 57.895 0.00 0.00 42.66 4.26
1865 1896 2.789203 CGCGTTGTCTTAGCCGCTC 61.789 63.158 0.00 0.00 43.70 5.03
1866 1897 2.809601 CGCGTTGTCTTAGCCGCT 60.810 61.111 0.00 0.00 43.70 5.52
1867 1898 4.500568 GCGCGTTGTCTTAGCCGC 62.501 66.667 8.43 0.00 42.53 6.53
1868 1899 4.191485 CGCGCGTTGTCTTAGCCG 62.191 66.667 24.19 0.00 0.00 5.52
1869 1900 3.849953 CCGCGCGTTGTCTTAGCC 61.850 66.667 29.95 0.00 0.00 3.93
1870 1901 2.789203 CTCCGCGCGTTGTCTTAGC 61.789 63.158 29.95 0.00 0.00 3.09
1871 1902 2.789203 GCTCCGCGCGTTGTCTTAG 61.789 63.158 29.95 10.76 0.00 2.18
1872 1903 2.807895 GCTCCGCGCGTTGTCTTA 60.808 61.111 29.95 3.73 0.00 2.10
1883 1914 1.944676 CATACTCGAACCGCTCCGC 60.945 63.158 0.00 0.00 0.00 5.54
1884 1915 0.179145 AACATACTCGAACCGCTCCG 60.179 55.000 0.00 0.00 0.00 4.63
1885 1916 1.134560 AGAACATACTCGAACCGCTCC 59.865 52.381 0.00 0.00 0.00 4.70
1886 1917 2.563471 AGAACATACTCGAACCGCTC 57.437 50.000 0.00 0.00 0.00 5.03
1887 1918 3.056749 AGAAAGAACATACTCGAACCGCT 60.057 43.478 0.00 0.00 0.00 5.52
1888 1919 3.251571 AGAAAGAACATACTCGAACCGC 58.748 45.455 0.00 0.00 0.00 5.68
1889 1920 3.858238 GGAGAAAGAACATACTCGAACCG 59.142 47.826 0.00 0.00 0.00 4.44
1890 1921 5.074584 AGGAGAAAGAACATACTCGAACC 57.925 43.478 0.00 0.00 0.00 3.62
1891 1922 6.267070 CCTAGGAGAAAGAACATACTCGAAC 58.733 44.000 1.05 0.00 0.00 3.95
1892 1923 5.163540 GCCTAGGAGAAAGAACATACTCGAA 60.164 44.000 14.75 0.00 0.00 3.71
1893 1924 4.338682 GCCTAGGAGAAAGAACATACTCGA 59.661 45.833 14.75 0.00 0.00 4.04
1894 1925 4.339814 AGCCTAGGAGAAAGAACATACTCG 59.660 45.833 14.75 0.00 0.00 4.18
1895 1926 5.596772 AGAGCCTAGGAGAAAGAACATACTC 59.403 44.000 14.75 4.52 0.00 2.59
1896 1927 5.524535 AGAGCCTAGGAGAAAGAACATACT 58.475 41.667 14.75 0.00 0.00 2.12
1897 1928 5.506649 CGAGAGCCTAGGAGAAAGAACATAC 60.507 48.000 14.75 0.00 0.00 2.39
1898 1929 4.580995 CGAGAGCCTAGGAGAAAGAACATA 59.419 45.833 14.75 0.00 0.00 2.29
1899 1930 3.383185 CGAGAGCCTAGGAGAAAGAACAT 59.617 47.826 14.75 0.00 0.00 2.71
1900 1931 2.755655 CGAGAGCCTAGGAGAAAGAACA 59.244 50.000 14.75 0.00 0.00 3.18
1901 1932 3.430333 CGAGAGCCTAGGAGAAAGAAC 57.570 52.381 14.75 0.00 0.00 3.01
1916 1947 2.202676 GCAAGGGAGTCGCGAGAG 60.203 66.667 10.24 0.00 43.49 3.20
1923 1954 4.070552 ACCGCTCGCAAGGGAGTC 62.071 66.667 14.47 7.11 44.69 3.36
1924 1955 4.379243 CACCGCTCGCAAGGGAGT 62.379 66.667 14.47 0.00 44.69 3.85
1928 1959 3.423154 GAACCACCGCTCGCAAGG 61.423 66.667 0.00 0.00 38.47 3.61
1929 1960 2.501223 TAGGAACCACCGCTCGCAAG 62.501 60.000 0.00 0.00 44.74 4.01
1930 1961 2.501223 CTAGGAACCACCGCTCGCAA 62.501 60.000 0.00 0.00 44.74 4.85
1931 1962 2.992689 TAGGAACCACCGCTCGCA 60.993 61.111 0.00 0.00 44.74 5.10
1932 1963 2.202756 CTAGGAACCACCGCTCGC 60.203 66.667 0.00 0.00 44.74 5.03
1933 1964 2.494918 CCTAGGAACCACCGCTCG 59.505 66.667 1.05 0.00 44.74 5.03
1934 1965 1.049289 ATCCCTAGGAACCACCGCTC 61.049 60.000 11.48 0.00 44.74 5.03
1935 1966 0.620700 AATCCCTAGGAACCACCGCT 60.621 55.000 11.48 0.00 44.74 5.52
1936 1967 0.463833 CAATCCCTAGGAACCACCGC 60.464 60.000 11.48 0.00 44.74 5.68
1937 1968 1.200519 TCAATCCCTAGGAACCACCG 58.799 55.000 11.48 0.00 44.74 4.94
1938 1969 3.049344 AGATCAATCCCTAGGAACCACC 58.951 50.000 11.48 0.00 34.34 4.61
1939 1970 3.071747 GGAGATCAATCCCTAGGAACCAC 59.928 52.174 11.48 0.00 34.34 4.16
1940 1971 3.318313 GGAGATCAATCCCTAGGAACCA 58.682 50.000 11.48 0.00 34.34 3.67
1941 1972 2.300437 CGGAGATCAATCCCTAGGAACC 59.700 54.545 11.48 0.00 35.82 3.62
1942 1973 2.966516 ACGGAGATCAATCCCTAGGAAC 59.033 50.000 11.48 0.00 35.82 3.62
1943 1974 2.965831 CACGGAGATCAATCCCTAGGAA 59.034 50.000 11.48 0.00 35.82 3.36
1944 1975 2.177016 TCACGGAGATCAATCCCTAGGA 59.823 50.000 11.48 0.00 35.82 2.94
1945 1976 2.560542 CTCACGGAGATCAATCCCTAGG 59.439 54.545 0.06 0.06 35.82 3.02
1946 1977 2.560542 CCTCACGGAGATCAATCCCTAG 59.439 54.545 0.00 0.00 35.82 3.02
1947 1978 2.598565 CCTCACGGAGATCAATCCCTA 58.401 52.381 0.00 0.00 35.82 3.53
1948 1979 1.418334 CCTCACGGAGATCAATCCCT 58.582 55.000 0.00 0.00 35.82 4.20
1949 1980 0.394565 CCCTCACGGAGATCAATCCC 59.605 60.000 0.00 0.00 35.82 3.85
1950 1981 1.069358 GACCCTCACGGAGATCAATCC 59.931 57.143 0.00 0.00 35.88 3.01
1951 1982 1.069358 GGACCCTCACGGAGATCAATC 59.931 57.143 0.00 0.00 34.64 2.67
1952 1983 1.123928 GGACCCTCACGGAGATCAAT 58.876 55.000 0.00 0.00 34.64 2.57
1953 1984 1.320344 CGGACCCTCACGGAGATCAA 61.320 60.000 0.00 0.00 34.64 2.57
1954 1985 1.753078 CGGACCCTCACGGAGATCA 60.753 63.158 0.00 0.00 34.64 2.92
1955 1986 1.753463 ACGGACCCTCACGGAGATC 60.753 63.158 2.84 0.00 34.64 2.75
1956 1987 2.052690 CACGGACCCTCACGGAGAT 61.053 63.158 2.84 0.00 34.64 2.75
1957 1988 2.494777 ATCACGGACCCTCACGGAGA 62.495 60.000 2.84 0.00 34.64 3.71
1958 1989 1.605058 AATCACGGACCCTCACGGAG 61.605 60.000 0.00 0.00 34.64 4.63
1959 1990 1.189524 AAATCACGGACCCTCACGGA 61.190 55.000 0.00 0.00 34.64 4.69
1960 1991 0.321298 AAAATCACGGACCCTCACGG 60.321 55.000 0.00 0.00 37.81 4.94
1961 1992 0.796312 CAAAATCACGGACCCTCACG 59.204 55.000 0.00 0.00 0.00 4.35
1962 1993 2.178912 TCAAAATCACGGACCCTCAC 57.821 50.000 0.00 0.00 0.00 3.51
1963 1994 3.343617 GAATCAAAATCACGGACCCTCA 58.656 45.455 0.00 0.00 0.00 3.86
1964 1995 2.351726 CGAATCAAAATCACGGACCCTC 59.648 50.000 0.00 0.00 0.00 4.30
1965 1996 2.356135 CGAATCAAAATCACGGACCCT 58.644 47.619 0.00 0.00 0.00 4.34
1966 1997 1.202143 GCGAATCAAAATCACGGACCC 60.202 52.381 0.00 0.00 0.00 4.46
1967 1998 1.529010 CGCGAATCAAAATCACGGACC 60.529 52.381 0.00 0.00 0.00 4.46
1968 1999 1.529010 CCGCGAATCAAAATCACGGAC 60.529 52.381 8.23 0.00 41.61 4.79
1969 2000 0.724549 CCGCGAATCAAAATCACGGA 59.275 50.000 8.23 0.00 41.61 4.69
1970 2001 0.724549 TCCGCGAATCAAAATCACGG 59.275 50.000 8.23 0.00 40.47 4.94
1971 2002 2.599848 GGATCCGCGAATCAAAATCACG 60.600 50.000 8.23 0.00 0.00 4.35
1972 2003 2.354510 TGGATCCGCGAATCAAAATCAC 59.645 45.455 8.23 0.00 0.00 3.06
1973 2004 2.637947 TGGATCCGCGAATCAAAATCA 58.362 42.857 8.23 0.00 0.00 2.57
1974 2005 3.691049 TTGGATCCGCGAATCAAAATC 57.309 42.857 8.23 0.00 0.00 2.17
1975 2006 3.885297 AGATTGGATCCGCGAATCAAAAT 59.115 39.130 19.96 6.42 42.25 1.82
1976 2007 3.278574 AGATTGGATCCGCGAATCAAAA 58.721 40.909 19.96 0.49 42.25 2.44
1977 2008 2.917933 AGATTGGATCCGCGAATCAAA 58.082 42.857 19.96 1.05 42.25 2.69
1978 2009 2.620251 AGATTGGATCCGCGAATCAA 57.380 45.000 19.96 7.15 42.25 2.57
1979 2010 2.620251 AAGATTGGATCCGCGAATCA 57.380 45.000 19.96 0.00 42.25 2.57
1980 2011 2.224314 GGAAAGATTGGATCCGCGAATC 59.776 50.000 8.23 0.16 40.72 2.52
1981 2012 2.158755 AGGAAAGATTGGATCCGCGAAT 60.159 45.455 8.23 0.00 38.31 3.34
1982 2013 1.209504 AGGAAAGATTGGATCCGCGAA 59.790 47.619 8.23 0.00 38.31 4.70
1983 2014 0.830648 AGGAAAGATTGGATCCGCGA 59.169 50.000 8.23 0.00 38.31 5.87
1984 2015 1.599542 GAAGGAAAGATTGGATCCGCG 59.400 52.381 7.39 0.00 38.31 6.46
1985 2016 1.950216 GGAAGGAAAGATTGGATCCGC 59.050 52.381 7.39 0.00 38.31 5.54
1986 2017 2.173569 AGGGAAGGAAAGATTGGATCCG 59.826 50.000 7.39 0.00 38.31 4.18
1987 2018 3.053320 ACAGGGAAGGAAAGATTGGATCC 60.053 47.826 4.20 4.20 0.00 3.36
1988 2019 4.203226 GACAGGGAAGGAAAGATTGGATC 58.797 47.826 0.00 0.00 0.00 3.36
1989 2020 3.053320 GGACAGGGAAGGAAAGATTGGAT 60.053 47.826 0.00 0.00 0.00 3.41
1990 2021 2.308866 GGACAGGGAAGGAAAGATTGGA 59.691 50.000 0.00 0.00 0.00 3.53
1991 2022 2.310052 AGGACAGGGAAGGAAAGATTGG 59.690 50.000 0.00 0.00 0.00 3.16
1992 2023 3.350833 CAGGACAGGGAAGGAAAGATTG 58.649 50.000 0.00 0.00 0.00 2.67
1993 2024 2.291217 GCAGGACAGGGAAGGAAAGATT 60.291 50.000 0.00 0.00 0.00 2.40
1994 2025 1.283321 GCAGGACAGGGAAGGAAAGAT 59.717 52.381 0.00 0.00 0.00 2.40
1995 2026 0.693049 GCAGGACAGGGAAGGAAAGA 59.307 55.000 0.00 0.00 0.00 2.52
1996 2027 0.695347 AGCAGGACAGGGAAGGAAAG 59.305 55.000 0.00 0.00 0.00 2.62
1997 2028 0.401738 CAGCAGGACAGGGAAGGAAA 59.598 55.000 0.00 0.00 0.00 3.13
1998 2029 0.473694 TCAGCAGGACAGGGAAGGAA 60.474 55.000 0.00 0.00 0.00 3.36
1999 2030 0.252881 ATCAGCAGGACAGGGAAGGA 60.253 55.000 0.00 0.00 0.00 3.36
2000 2031 0.179936 GATCAGCAGGACAGGGAAGG 59.820 60.000 0.00 0.00 0.00 3.46
2001 2032 0.179936 GGATCAGCAGGACAGGGAAG 59.820 60.000 0.00 0.00 0.00 3.46
2002 2033 1.274703 GGGATCAGCAGGACAGGGAA 61.275 60.000 0.00 0.00 0.00 3.97
2003 2034 1.690633 GGGATCAGCAGGACAGGGA 60.691 63.158 0.00 0.00 0.00 4.20
2004 2035 1.692042 AGGGATCAGCAGGACAGGG 60.692 63.158 0.00 0.00 0.00 4.45
2005 2036 1.694133 GGAGGGATCAGCAGGACAGG 61.694 65.000 0.00 0.00 0.00 4.00
2006 2037 0.690411 AGGAGGGATCAGCAGGACAG 60.690 60.000 0.00 0.00 0.00 3.51
2007 2038 0.979709 CAGGAGGGATCAGCAGGACA 60.980 60.000 0.00 0.00 0.00 4.02
2008 2039 1.828768 CAGGAGGGATCAGCAGGAC 59.171 63.158 0.00 0.00 0.00 3.85
2009 2040 2.068821 GCAGGAGGGATCAGCAGGA 61.069 63.158 0.00 0.00 0.00 3.86
2010 2041 1.706995 ATGCAGGAGGGATCAGCAGG 61.707 60.000 0.00 0.00 38.75 4.85
2011 2042 0.250381 GATGCAGGAGGGATCAGCAG 60.250 60.000 0.00 0.00 43.30 4.24
2012 2043 1.834996 GATGCAGGAGGGATCAGCA 59.165 57.895 0.00 0.00 43.30 4.41
2013 2044 4.796314 GATGCAGGAGGGATCAGC 57.204 61.111 0.00 0.00 43.30 4.26
2016 2047 1.003349 CCAGATGATGCAGGAGGGATC 59.997 57.143 0.00 0.00 44.02 3.36
2017 2048 1.065647 CCAGATGATGCAGGAGGGAT 58.934 55.000 0.00 0.00 0.00 3.85
2018 2049 1.058428 CCCAGATGATGCAGGAGGGA 61.058 60.000 0.00 0.00 36.96 4.20
2019 2050 1.351080 ACCCAGATGATGCAGGAGGG 61.351 60.000 0.00 0.00 40.66 4.30
2020 2051 0.108207 GACCCAGATGATGCAGGAGG 59.892 60.000 0.00 0.00 0.00 4.30
2021 2052 0.108207 GGACCCAGATGATGCAGGAG 59.892 60.000 0.00 0.00 0.00 3.69
2022 2053 1.689243 CGGACCCAGATGATGCAGGA 61.689 60.000 0.00 0.00 0.00 3.86
2023 2054 1.227764 CGGACCCAGATGATGCAGG 60.228 63.158 0.00 0.00 0.00 4.85
2024 2055 1.227764 CCGGACCCAGATGATGCAG 60.228 63.158 0.00 0.00 0.00 4.41
2025 2056 2.745308 CCCGGACCCAGATGATGCA 61.745 63.158 0.73 0.00 0.00 3.96
2026 2057 1.407656 TACCCGGACCCAGATGATGC 61.408 60.000 0.73 0.00 0.00 3.91
2027 2058 1.128200 TTACCCGGACCCAGATGATG 58.872 55.000 0.73 0.00 0.00 3.07
2028 2059 2.118403 ATTACCCGGACCCAGATGAT 57.882 50.000 0.73 0.00 0.00 2.45
2029 2060 1.766496 GAATTACCCGGACCCAGATGA 59.234 52.381 0.73 0.00 0.00 2.92
2030 2061 1.202770 GGAATTACCCGGACCCAGATG 60.203 57.143 0.73 0.00 0.00 2.90
2031 2062 1.137697 GGAATTACCCGGACCCAGAT 58.862 55.000 0.73 0.00 0.00 2.90
2032 2063 0.043637 AGGAATTACCCGGACCCAGA 59.956 55.000 0.73 0.00 40.05 3.86
2033 2064 0.468648 GAGGAATTACCCGGACCCAG 59.531 60.000 0.73 0.00 40.05 4.45
2034 2065 0.984432 GGAGGAATTACCCGGACCCA 60.984 60.000 0.73 0.00 40.05 4.51
2035 2066 0.693430 AGGAGGAATTACCCGGACCC 60.693 60.000 0.73 0.00 40.05 4.46
2036 2067 0.757512 GAGGAGGAATTACCCGGACC 59.242 60.000 0.73 0.00 40.05 4.46
2037 2068 1.687660 GAGAGGAGGAATTACCCGGAC 59.312 57.143 0.73 0.00 40.05 4.79
2038 2069 1.753141 CGAGAGGAGGAATTACCCGGA 60.753 57.143 0.73 0.00 40.05 5.14
2039 2070 0.674534 CGAGAGGAGGAATTACCCGG 59.325 60.000 0.00 0.00 40.05 5.73
2040 2071 0.032267 GCGAGAGGAGGAATTACCCG 59.968 60.000 0.00 0.00 40.05 5.28
2041 2072 1.069358 CAGCGAGAGGAGGAATTACCC 59.931 57.143 0.00 0.00 40.05 3.69
2042 2073 1.539280 GCAGCGAGAGGAGGAATTACC 60.539 57.143 0.00 0.00 39.35 2.85
2043 2074 1.410882 AGCAGCGAGAGGAGGAATTAC 59.589 52.381 0.00 0.00 0.00 1.89
2044 2075 1.410517 CAGCAGCGAGAGGAGGAATTA 59.589 52.381 0.00 0.00 0.00 1.40
2045 2076 0.177604 CAGCAGCGAGAGGAGGAATT 59.822 55.000 0.00 0.00 0.00 2.17
2046 2077 0.975040 ACAGCAGCGAGAGGAGGAAT 60.975 55.000 0.00 0.00 0.00 3.01
2047 2078 1.188219 AACAGCAGCGAGAGGAGGAA 61.188 55.000 0.00 0.00 0.00 3.36
2048 2079 1.599606 GAACAGCAGCGAGAGGAGGA 61.600 60.000 0.00 0.00 0.00 3.71
2049 2080 1.153667 GAACAGCAGCGAGAGGAGG 60.154 63.158 0.00 0.00 0.00 4.30
2050 2081 1.515952 CGAACAGCAGCGAGAGGAG 60.516 63.158 0.00 0.00 0.00 3.69
2051 2082 2.568612 CGAACAGCAGCGAGAGGA 59.431 61.111 0.00 0.00 0.00 3.71
2052 2083 2.507992 CCGAACAGCAGCGAGAGG 60.508 66.667 0.00 0.00 0.00 3.69
2053 2084 2.507992 CCCGAACAGCAGCGAGAG 60.508 66.667 0.00 0.00 0.00 3.20
2054 2085 4.069232 CCCCGAACAGCAGCGAGA 62.069 66.667 0.00 0.00 0.00 4.04
2059 2090 2.892425 GATCGCCCCGAACAGCAG 60.892 66.667 0.00 0.00 39.99 4.24
2060 2091 4.467084 GGATCGCCCCGAACAGCA 62.467 66.667 0.00 0.00 39.99 4.41
2061 2092 4.467084 TGGATCGCCCCGAACAGC 62.467 66.667 0.00 0.00 39.99 4.40
2062 2093 2.202932 CTGGATCGCCCCGAACAG 60.203 66.667 7.81 7.81 39.99 3.16
2063 2094 3.781307 CCTGGATCGCCCCGAACA 61.781 66.667 0.00 0.00 39.99 3.18
2064 2095 4.547367 CCCTGGATCGCCCCGAAC 62.547 72.222 0.00 0.00 39.99 3.95
2072 2103 3.031417 AAGGAACGCCCCTGGATCG 62.031 63.158 0.00 0.09 36.49 3.69
2073 2104 1.452108 CAAGGAACGCCCCTGGATC 60.452 63.158 0.00 0.00 36.49 3.36
2074 2105 0.912487 TACAAGGAACGCCCCTGGAT 60.912 55.000 5.18 0.00 36.49 3.41
2075 2106 0.912487 ATACAAGGAACGCCCCTGGA 60.912 55.000 5.18 0.00 36.49 3.86
2076 2107 0.463833 GATACAAGGAACGCCCCTGG 60.464 60.000 0.00 0.00 36.49 4.45
2077 2108 0.810031 CGATACAAGGAACGCCCCTG 60.810 60.000 0.00 0.00 36.49 4.45
2078 2109 1.520666 CGATACAAGGAACGCCCCT 59.479 57.895 0.00 0.00 38.42 4.79
2079 2110 2.178235 GCGATACAAGGAACGCCCC 61.178 63.158 0.00 0.00 44.27 5.80
2080 2111 3.406559 GCGATACAAGGAACGCCC 58.593 61.111 0.00 0.00 44.27 6.13
2083 2114 1.429148 GGGCAGCGATACAAGGAACG 61.429 60.000 0.00 0.00 0.00 3.95
2084 2115 0.392461 TGGGCAGCGATACAAGGAAC 60.392 55.000 0.00 0.00 0.00 3.62
2085 2116 0.392461 GTGGGCAGCGATACAAGGAA 60.392 55.000 0.00 0.00 0.00 3.36
2086 2117 1.220749 GTGGGCAGCGATACAAGGA 59.779 57.895 0.00 0.00 0.00 3.36
2087 2118 1.819632 GGTGGGCAGCGATACAAGG 60.820 63.158 0.00 0.00 0.00 3.61
2088 2119 1.819632 GGGTGGGCAGCGATACAAG 60.820 63.158 0.00 0.00 0.00 3.16
2089 2120 1.847798 AAGGGTGGGCAGCGATACAA 61.848 55.000 0.00 0.00 0.00 2.41
2090 2121 2.297895 AAGGGTGGGCAGCGATACA 61.298 57.895 0.00 0.00 0.00 2.29
2091 2122 1.819632 CAAGGGTGGGCAGCGATAC 60.820 63.158 0.00 0.00 0.00 2.24
2092 2123 2.589540 CAAGGGTGGGCAGCGATA 59.410 61.111 0.00 0.00 0.00 2.92
2093 2124 4.431131 CCAAGGGTGGGCAGCGAT 62.431 66.667 0.00 0.00 41.77 4.58
2102 2133 2.987547 CAGCCACTGCCAAGGGTG 60.988 66.667 1.29 1.29 45.64 4.61
2103 2134 4.290622 CCAGCCACTGCCAAGGGT 62.291 66.667 0.00 0.00 38.69 4.34
2104 2135 4.290622 ACCAGCCACTGCCAAGGG 62.291 66.667 0.00 0.00 38.69 3.95
2105 2136 2.674380 GACCAGCCACTGCCAAGG 60.674 66.667 0.00 0.00 38.69 3.61
2106 2137 3.052082 CGACCAGCCACTGCCAAG 61.052 66.667 0.00 0.00 38.69 3.61
2107 2138 3.535629 CTCGACCAGCCACTGCCAA 62.536 63.158 0.00 0.00 38.69 4.52
2108 2139 4.007644 CTCGACCAGCCACTGCCA 62.008 66.667 0.00 0.00 38.69 4.92
2109 2140 4.767255 CCTCGACCAGCCACTGCC 62.767 72.222 0.00 0.00 38.69 4.85
2110 2141 4.767255 CCCTCGACCAGCCACTGC 62.767 72.222 0.00 0.00 37.95 4.40
2111 2142 2.883828 AACCCTCGACCAGCCACTG 61.884 63.158 0.00 0.00 0.00 3.66
2112 2143 2.526873 AACCCTCGACCAGCCACT 60.527 61.111 0.00 0.00 0.00 4.00
2113 2144 2.358737 CAACCCTCGACCAGCCAC 60.359 66.667 0.00 0.00 0.00 5.01
2114 2145 4.329545 GCAACCCTCGACCAGCCA 62.330 66.667 0.00 0.00 0.00 4.75
2117 2148 4.760047 CCGGCAACCCTCGACCAG 62.760 72.222 0.00 0.00 0.00 4.00
2119 2150 4.324991 AACCGGCAACCCTCGACC 62.325 66.667 0.00 0.00 0.00 4.79
2120 2151 2.741211 GAACCGGCAACCCTCGAC 60.741 66.667 0.00 0.00 0.00 4.20
2121 2152 2.920912 AGAACCGGCAACCCTCGA 60.921 61.111 0.00 0.00 0.00 4.04
2122 2153 2.434359 GAGAACCGGCAACCCTCG 60.434 66.667 0.00 0.00 0.00 4.63
2123 2154 1.079057 GAGAGAACCGGCAACCCTC 60.079 63.158 0.00 0.86 0.00 4.30
2124 2155 1.201429 ATGAGAGAACCGGCAACCCT 61.201 55.000 0.00 0.00 0.00 4.34
2125 2156 1.026718 CATGAGAGAACCGGCAACCC 61.027 60.000 0.00 0.00 0.00 4.11
2126 2157 1.026718 CCATGAGAGAACCGGCAACC 61.027 60.000 0.00 0.00 0.00 3.77
2127 2158 1.648467 GCCATGAGAGAACCGGCAAC 61.648 60.000 0.00 0.00 42.50 4.17
2128 2159 1.377202 GCCATGAGAGAACCGGCAA 60.377 57.895 0.00 0.00 42.50 4.52
2129 2160 2.268920 GCCATGAGAGAACCGGCA 59.731 61.111 0.00 0.00 42.50 5.69
2130 2161 2.892425 CGCCATGAGAGAACCGGC 60.892 66.667 0.00 0.00 39.45 6.13
2131 2162 2.202932 CCGCCATGAGAGAACCGG 60.203 66.667 0.00 0.00 0.00 5.28
2132 2163 1.227089 CTCCGCCATGAGAGAACCG 60.227 63.158 0.00 0.00 34.11 4.44
2133 2164 1.144936 CCTCCGCCATGAGAGAACC 59.855 63.158 0.00 0.00 34.11 3.62
2134 2165 0.179097 GACCTCCGCCATGAGAGAAC 60.179 60.000 0.00 0.00 34.11 3.01
2135 2166 1.330655 GGACCTCCGCCATGAGAGAA 61.331 60.000 0.00 0.00 34.11 2.87
2136 2167 1.758514 GGACCTCCGCCATGAGAGA 60.759 63.158 0.00 0.00 34.11 3.10
2137 2168 2.818132 GGACCTCCGCCATGAGAG 59.182 66.667 0.00 0.00 34.11 3.20
2147 2178 1.834822 CTCCCCATCTCGGACCTCC 60.835 68.421 0.00 0.00 36.56 4.30
2148 2179 0.825840 CTCTCCCCATCTCGGACCTC 60.826 65.000 0.00 0.00 36.56 3.85
2149 2180 1.231641 CTCTCCCCATCTCGGACCT 59.768 63.158 0.00 0.00 36.56 3.85
2150 2181 1.834822 CCTCTCCCCATCTCGGACC 60.835 68.421 0.00 0.00 36.56 4.46
2151 2182 0.825840 CTCCTCTCCCCATCTCGGAC 60.826 65.000 0.00 0.00 36.56 4.79
2152 2183 1.539165 CTCCTCTCCCCATCTCGGA 59.461 63.158 0.00 0.00 36.56 4.55
2153 2184 2.206536 GCTCCTCTCCCCATCTCGG 61.207 68.421 0.00 0.00 0.00 4.63
2154 2185 2.560119 CGCTCCTCTCCCCATCTCG 61.560 68.421 0.00 0.00 0.00 4.04
2155 2186 2.866726 GCGCTCCTCTCCCCATCTC 61.867 68.421 0.00 0.00 0.00 2.75
2156 2187 2.841988 GCGCTCCTCTCCCCATCT 60.842 66.667 0.00 0.00 0.00 2.90
2157 2188 2.841988 AGCGCTCCTCTCCCCATC 60.842 66.667 2.64 0.00 0.00 3.51
2158 2189 3.160047 CAGCGCTCCTCTCCCCAT 61.160 66.667 7.13 0.00 0.00 4.00
2163 2194 3.780173 AAGGGCAGCGCTCCTCTC 61.780 66.667 17.30 5.41 30.95 3.20
2164 2195 4.093291 CAAGGGCAGCGCTCCTCT 62.093 66.667 17.30 6.50 30.95 3.69
2165 2196 4.087892 TCAAGGGCAGCGCTCCTC 62.088 66.667 17.30 3.55 30.95 3.71
2166 2197 4.093291 CTCAAGGGCAGCGCTCCT 62.093 66.667 13.22 9.96 32.23 3.69
2177 2208 2.359975 GGAACCACGCCCTCAAGG 60.360 66.667 0.00 0.00 39.47 3.61
2178 2209 1.672356 CAGGAACCACGCCCTCAAG 60.672 63.158 0.00 0.00 0.00 3.02
2179 2210 2.429930 CAGGAACCACGCCCTCAA 59.570 61.111 0.00 0.00 0.00 3.02
2180 2211 4.329545 GCAGGAACCACGCCCTCA 62.330 66.667 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.