>input_sequence_86790
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--------------------------------------------------------------------ATGGACGGCGGG
AAGAAGAGCCGGGACCCGTACAAGCTGCCGCAGGAGCGAAGGGACCGCAAGTCAGGCTCCGGGATGAGCGGCGACGCCAA
GAAGGGCGGCCGTGGCGGCAAGTTCACCTGGGAGGGCACCGACGGCTACACCGACGAGGATCTTGACCTCATCGGCAACA
AGGGCAGGGGTACCGGCGCCTCCGACAACAAGAAGTCCTAG---------------------------------------
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>chr1D_1_TraesCS1D01G124000
AGGGCTTTGTAGGCATGAAAATGTTTGGAAGAATAACACCTTCTCCCTCTGTTTTACACCACCTTGAAGAGAAAGGATGG
TAAGCTCTAACTAACTACAACATCTATATCCAACTTATGTGCATTGCAATTCATATCAAACATACATGTAGACGCCTTCT
AGGCGCAAATCCAAAGAGGCGCTCCTT-GGAGGCGGACGAAGAGGTCGAATGGATTGCTTGGGGTGGCCTCCCCGGGCCG
AAGCAGTTGGAAGATGCCCTCCATCGCCGGCCTGGCAAGCATGTGCAGCTCCCTGAGCTGCGTGAACTTGTCTCCAAGAA
TCACAGGAGAGAGACAACAACACCCGAGGAATGACG-CGGGGCAAGCAGAGAGACAACGGCGCCAGATCCAAAGACGAAA
GTCACATAAGGGGACGAAGGAG-GACTACGAAAGAGAGTGACAACTAGGGTTCCCACCGAACTAGTCACTCTCTTTGCCC
TTACGTGCAGCCCAGCCATCCACGGAATGCCACGCAAGGGCCAACACGTGAAATCTTGGAACTGCCCTCGGCGGCCACCC
AAAACTACGGGCGGTGGCACGATCCCTGAGCCCCACTAAAACCAGCACCGGCCACACCCGCTTCTGCGGTCGATGACAAT
AGCGGCCCACCCCGTTGACTCCAACTTCTATAGAGAGACAAAATGGTAGAACATCAGCGAT-AAATTAAACACTATTCAT
TACTCTCCTCATTGGTCTTGATCCAACGGCTCGGATCAATCGATCTCAAAATCGAATGGCTAGAAGTTGGACACCGAATC
A---AACGGTCGGACGCTCCATTTTTTTTATGGAAGAAGGTCGTGACAATCCAATCCTTGTCGCTGGAGTAATTGGATTC
ACAC----GACCTTCTCCCATAAATAAGCA---------------CAGCGAAGCAGAGACGCACAGCACTTTTCATCTCC
CT--AAAAAGCACTTTCCATCTCTTCTCGTTGCTGGATCTTCTTGCAGGGGAGGAAAAAGGGCCGGCGATGGACGGCGGG
AAGAAGAGCCGGGACCCGTACAAGCTGCCGCAGGAGCGAAGGGACCGCAAGTCAGGCTCCGGGATGAGCGGCGACGCCAA
GAAGGGCGGCCGTGGCGGCAAGTTCACCTGGGAGGGCACCGACGGCTACACCGACGAGGATCTTGACCTCATCGGCAACA
AGGGCAGGGGTACCGGCGCCTCCGACAACAAGAAGTCCTAGGGAGATGGCGACCCCTCCGACGAGTAGGCGCTACGTCAT
CCGGCCCTGCCCGCCGGTCTTCTTCCTGTCCGACCGATCCCAAGCCTGCACGGTGTCAACTTTCGTTAGCTTTCTCGTGT
CAGCTCTTAAATAATACGATCGAGTCGTGACCTCTTTGGCATGTACGTA-TATATGATCTATTTTCAGTTATCGACTTGC
TAATGCCGGATGAATTGTTCTATCTGCATCTCGCACTTGGGATCAACCTGGTCTTATGTTTCTGTGATCTTGTTTTTCCT
TCTGCGTTGATTTCTTCTCAATTTACCGAATGGATCTGCTATCGGCGGACGTATGGTGTCTTGATTGGTGCGTTTAGTCC
TTGCTTAGTTGTGATTTCGTAGGAGTACTATGATTTCTGAATCAGCTGAGAGAAGATCCATCGGGATCAGTTCTTTCTTA
CTTGTCAGTCTTGCATCGAGATTGAAGATCACATATTTCCACCTTCACATACTT-GGAAAATTACTGCGTTGTGTGAGTC
TTCAAGAGTGGCCATGATCATCCTGGTCCACCAATATGATTGATCATCATCCAACTCTAGCAAATTGTAATACTCCACCC
AATCCCAAAATAAGTGGTGTGGTTTAATTCAACCAAAACCGACGACAAGGCTGATGAGCGGCTAAGACAACGCGCGGAGC
GGTTCGAGTATGTTCTTTCTCCTAGGCTCTCGCGACTCCCTTGCGAGCGGTGGTTCCTAGGGATTGATCTCCGTGAGGGT
CCGTGATTTTGATTCGCGGATCCAATCTTTCCTTCCCTGTCCTGCTGATCCCTCCTGCATCATCTGGGTCCGGGTAATTC
CTCCTCTCGCTGCTGTTCGGGGCGATCCAGGGGCGTTCCTTGTATCGCTGCCCACCCTTGGCAGTGGCTGGTCGAGGGTT
GCCGGTTCTCTCATGGCGGAGGTCCGAGATGGGGAGAGGAGCGCTGCCCTTGAGGGCGTGGTTCCTGCGCAGGGCTGCGA
TGT
>chr1A_1
AGGGCTTTGTAGGCATGCCAATGTTTGGAAGAATAACACCTTCTCCCTCTGTTTTACAACACCTTGAAGAGAAATGATGG
TAAGCTCTAACTAACTGCAACATCCATATCCAACTTATGTGCATTGCAGTTCATATCAAACATACGTGCAGACGCCTTCT
AGGCGCAAATCCAAAGAGGCAC-CCCT-GGAGGCGGACGACGAGGTCGAATGGATTTCTTGGGGTGGCCTCCACGAGCCA
AAGCAGATGGAAGATGCCCTCCATCGCCGGCCTGGCAAGCATGTGCAGCCCCCTGAGCTGCGTGAGCTTGTCTCCAAGAA
TCACATGAGAGAGACAACAACACCTGAGGAATGACGACGGGGCAAGCAGAGAGACAACGGCGCCGGATCCAAAGACGGAA
GTCACAGAAGGGGCCGAAGTGAGGACTGCGAAAGAGAGTGACAACTAGGGTTCTCGCCCAACTAGTCACTCTCTTCGCCC
TTACGCGCAACCCAGCCATCCACGGAATACCACGCAAGGGCCAACACGTGAAATCTTGGAACTGCCCTCGACGGCCACCC
AAAACTACGGGCGGTGGCACGATCCATGCGCCCCACTAAAACCAACACCGGCCACACCCGCTTCCGCGGTCGATGACAAC
AGCGGCCCACCCCGCCGACCCCGACTTCCACAGAGAGACAAAATGGTAGAACGTGAGCAAT-AAATTGGGCACTATTCAT
TGCTCTCCTCACCGGTCTTGATTCAACGGCTCGGATCAATCGATCTCAAACTCGAATGGTT-------------------
-----------GGGGGTTCCATTTCTTAC------------------------------------GTGGTAATTGAATTG
GCATGATTGACCTTCTCCCATAAATAAGCCCGTGGAAACAAGCACCACCGAAACAGAGACGCACCCCTA-----------
---AAAAAAGCACTTTCCATCTCTTCTCGTTGCTGGATCTTCTTGCAGGGGAGGAAAAAGGGCCGGCGATGGACGGCGGG
AAGAAGAGCCGGGACCCGTACAAGCTGCCGCAGGAGCGCAGGGACCGCAAGTCAGGCTCCGGGATGAGCGGCGACGCCAA
GAAGGGCGGCCGTGGCGGCAAGTTCACCTGGGAGGGCGCCGACGGCTACACCGACGAGGATCTTGACCTCATCGGCAACA
AGGGCAGGGGGACCGGCGCCTCCGACAACAAGAAGTCCTAGGGAGATGGCGACCCCTCCGACGAGTAGGCGCTACGTCAT
CCGGCCCTGCCCGCCCGTCTTCTTCCTGTCCGATCGATCCCAAGCCTGCACGGTGTCAACTTTCGTTAGCTTTCTCGTGT
CTGTTATTAAATAATACGATCGAATCGTGGCCTCTTTGGCATGTACGTACTATATGATCTATTTTCAGTTATCGACTTGC
TAATGCCGGATGAATTGTTCTATCTGCATCTCGCACTTGGGATCAACCTGGTCTTATGTTTCTGTGATCTTGTTTTTCCT
TCTGCGTTGATTTCTTCTCAATTTACCGAATGGATCTGCTATCGGCGGACGTATGCTGTCTTGGTTGCTGCGTTTAGTCC
TTGCTTAGTTGTGATTTCGTAGGAGTGCTATGATCTCTGAATCAGTTGACAGAAGATCCATCGGGATCAGTTCTTTCTTA
CTTGTCAGTCTTGCATCGAGATTGAAGATGATATATTTTCACCTTCACATACTT-GGAAAATTACTGCGTTGTGTGAGTC
TTCAAGAGTGGCCATGATCATCCTGGACCACCAATATGATTGATCGTCATCCAACTCTAGCAAATTGTAATACTCCACCC
AATCCCAAAATAAGTGTTGTGGTTTAATTCAACCAAAACCG---------------------------------------
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>chr1B_1
AGGGCTTTGTAGGCATGACAATGTTTGAAAGAATAACACTTTCTCCCTCTGTTTTACACCACCTTGAAGTGAAAGGATGG
TAAACTCCAACTAACTGCAACATCTGTATCCATCTTATGTGCATTGCAGTTCATATCAAACATACATGCAGACGCCTTGT
AGGCGCAAATCCAAAGAGGTGC-CCCTTGGAGGCGGACGACGATGTCGAATGGGTTGCTTGGGGTGGCCTCCCCGGGCCG
AAGCAGTTGGAAGATGCCCTCCATCGTCGGCCTGGCAAGCGTGCGCAGCTCCCTGAGCTGCGTGAGCTTGTCTCCAAGAA
TCACAGGAGAGAGACAACAACACCTGAGGAATGACGGCGGGGCAAGCAGAGAGACAACGACGCCGGATCCAAAGACGAAA
GTCACACAAGGGGACGAAGTGAAGACTGCGAAAGAGAGTGAGAACTAGGGTTCTCACCCAACTAGGTATTCTCTTCACCC
TTACGCGCAGCCCAACCATCCAC-GAATGCCACGCAAGGGCCAACACGTGAAATCTTGGAACTGCCCTCGGCGGCAACCC
AAAACTACGGGCGGTGGCACGATCCCTGCGCCCCACTAAAACCAGCACCGGCCACACCCGCTTCCGTGGTCGATGACAAC
AGCGGCCCACCCCAGCGACCCCGACTTCCATAGAGAGACAAAATGGTAGAACGTGAGCAACAAAATTGGGCACTATTCAT
TGCTCTCCTCACCGGTCTTGATCCAACGGCTCGGATTAATCGATCTCAAAATCGAATGGCCAGAAGTTGTTTGGACACAG
AATCAACGGTGGGGGGCTTCATTTCTTGC------------------------------------GGGGCAATTGGATTG
GCATGATTGACCTTTTCCCGTAAATAAGCCCCTGGAAACAAGCACCAGCGAAACAGAGACGCACAGCACTTTTCATCTCC
CTTAAAAAAGCACTTTCCGTCTCTTCTCGTTGCTGGATCTTCTCGCAGGGGAGGAAAAAGGGCCGGCGATGGACGGCGGG
AAGAAGAGCCGGGACCCGTACAAGCTGCCGCAGGAGCGCAGGGACCGCAAGTCAGGCTCCGGGATGAGCGGCGACGCGAA
GAAGGGCGGCCGTGGCGGCAAGTTCACCTGGGAGGGCGCCGACGGCTACACCGACGAGGATCTTGACCTCATCGGCAACA
AGGGCAGGGGTACCGGCGCCTCCGACAACAAGAAGTCCTAGGGAGATGGCGACCCCTCCGACGAGTAGGCGCTACGTCAT
CCGGCCCTGCCCGCCCGTCTTCTTCCTGTCCGATCGATCGCAAGCCTGAACGGTGTCAACTTTCGTTAGCTTTCTCGTGT
CAGTTCTTAAATAATACGATCGAGTTGTGGCCTCTTTGGCATGTA-----TATATGATCTATTTTCAGTTATCGACTTGC
TAATGCCGGATGAATTGTTCTATCTGCATCTCGCACTTGGGATCAACCTGGTCTTATGTTTCTGTGATCTTGTTTTTCCT
TCTGCGCTGATTTCTTCTCAATTTATCGAATGGATCTGCTATCGGCGGACGTTTGCTGTCTTGATTGCTGCGTTTAGTCC
TTGCTTAGTTGTGATTTCGTAGGAGTACTATGATTTCTGAATCAGCTGACAGAAGATCCATCGGGATCAGTCCTTT----
---GTCAGTCGTGCACCGAGATTGAAGATCACATATTTTCACCTTCACATACTTAGGAAGATTACTGCGTTGTGTGAGTG
TTCAAGAGTGGCCATGATCATCCTGGCCCACCAATATGATTGATCATCATCCAACTCTAGCAAATTGTAATACTCCACCC
AATCCCAAAATAAGTGTCGTGGTTTAATTCAACCAAAACCG---------------------------------------
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>SNPs
------------------S-------------------------------------------------------------
----------------S-------------------------------S-------------------S-----------
----------------------S--S--------------S---------------------------------------
-----------------------------------------------------------------S--------------
------------------------S---------------------------------------S---------------
------S------------SSS-----S-------------------------S----S----------------S----
-----S--------------------------------------------------------------------------
----------------------------S-----------------------------------S--------------S
--------------SS---S--S-----S-----------------------S-S---S--------SSS----------
-S---------SS--------------------------------------------------------SSSSSSS-SSS
----------S--SS---------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----------S
S--S-------------------------S----------------------S---------------------------
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--------------------------------------S-----------------------------------------
-------------------------------------S------------------------------------------
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---------------S-----------------S----------------------------------------------
---S-------------------------S--------------------------------------------------
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-------------------------------------------------------S-----------S------------
-------------------------------------------------S------------------------------
--------------------------------------S-----------------------------------------
--------------------------S-----------------------------------------------------
----------------S------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_459
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---------------------------------------GACAACTAGGGTTCCCACCG---------------------
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>reverse_2071
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----------------------------------------------------------------------CGGGTAATTC
CTCCTCTCGC----------------------------------------------------------------------
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---
