Multiple sequence alignment - TraesCS1D01G123300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G123300 chr1D 100.000 3918 0 0 1 3918 124905716 124901799 0.000000e+00 7236.0
1 TraesCS1D01G123300 chr1A 97.474 3722 67 13 1 3707 137408675 137404966 0.000000e+00 6327.0
2 TraesCS1D01G123300 chr1A 88.000 125 12 2 3726 3850 137265466 137265345 1.130000e-30 145.0
3 TraesCS1D01G123300 chr1B 97.957 3230 47 6 1 3225 188907518 188904303 0.000000e+00 5581.0
4 TraesCS1D01G123300 chr1B 95.513 468 16 3 3247 3710 188828827 188828361 0.000000e+00 743.0
5 TraesCS1D01G123300 chr6D 83.710 221 12 6 3722 3918 431254962 431255182 1.860000e-43 187.0
6 TraesCS1D01G123300 chr7B 92.982 114 8 0 3726 3839 409792268 409792155 2.420000e-37 167.0
7 TraesCS1D01G123300 chr5D 91.667 120 7 2 3726 3843 529748796 529748914 3.130000e-36 163.0
8 TraesCS1D01G123300 chr5D 82.234 197 19 9 3726 3918 529743600 529743784 5.240000e-34 156.0
9 TraesCS1D01G123300 chrUn 97.959 49 1 0 2699 2747 43370833 43370785 6.980000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G123300 chr1D 124901799 124905716 3917 True 7236 7236 100.000 1 3918 1 chr1D.!!$R1 3917
1 TraesCS1D01G123300 chr1A 137404966 137408675 3709 True 6327 6327 97.474 1 3707 1 chr1A.!!$R2 3706
2 TraesCS1D01G123300 chr1B 188904303 188907518 3215 True 5581 5581 97.957 1 3225 1 chr1B.!!$R2 3224


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
956 958 0.179145 GCATGTCTCATTGCAGCCAC 60.179 55.0 0.00 0.00 38.72 5.01 F
968 970 0.673022 GCAGCCACCTCAGTTCTCTG 60.673 60.0 0.00 0.00 42.54 3.35 F
2628 2643 0.040157 TTGCATCACTCGTGCTTTGC 60.040 50.0 10.46 10.46 42.92 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2472 2487 0.969149 AGGCAGGCAAAAGGTAAAGC 59.031 50.000 0.00 0.0 0.00 3.51 R
2692 2707 1.153289 GTGACCTGCGGCATCTGAT 60.153 57.895 1.75 0.0 0.00 2.90 R
3874 3893 0.109342 GCAAGATGGGGATGACCGAT 59.891 55.000 0.00 0.0 40.82 4.18 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
562 564 9.291664 CAGACGTGGTTTCTTTATTTGTAAAAA 57.708 29.630 0.00 0.00 0.00 1.94
789 791 4.469657 ACTTGCAGAATTTGTAGTTGGGA 58.530 39.130 0.00 0.00 0.00 4.37
858 860 6.061022 TGTTATGCTTTATTCACAGGAGGA 57.939 37.500 0.00 0.00 0.00 3.71
870 872 7.578310 ATTCACAGGAGGACATTATCAATTG 57.422 36.000 0.00 0.00 0.00 2.32
956 958 0.179145 GCATGTCTCATTGCAGCCAC 60.179 55.000 0.00 0.00 38.72 5.01
968 970 0.673022 GCAGCCACCTCAGTTCTCTG 60.673 60.000 0.00 0.00 42.54 3.35
1692 1698 5.369699 TCTTCTAGGCAAATATTAGGGTGCT 59.630 40.000 9.17 0.50 37.17 4.40
1835 1841 6.041409 TGCTGGGACTTTGTTTGATATTTGAA 59.959 34.615 0.00 0.00 0.00 2.69
2387 2399 3.118112 GGGTCTCATCACCACAGAATCAT 60.118 47.826 0.00 0.00 38.32 2.45
2426 2441 8.206325 ACATGATTTAAGAGTGCTTAGTGATG 57.794 34.615 0.00 0.00 37.84 3.07
2472 2487 2.905075 TGGAAATGCTATCACCGACAG 58.095 47.619 0.00 0.00 0.00 3.51
2628 2643 0.040157 TTGCATCACTCGTGCTTTGC 60.040 50.000 10.46 10.46 42.92 3.68
2692 2707 0.106769 AGTGTGTCCATGGTTGTGCA 60.107 50.000 12.58 2.57 0.00 4.57
2777 2792 7.067494 GCTGGAGTCATATTTTCAGGTACATTT 59.933 37.037 0.00 0.00 0.00 2.32
3023 3038 2.480642 TTAACCTGGGCCCTTTTGTT 57.519 45.000 25.70 21.07 0.00 2.83
3138 3153 4.628766 ACTCCTTTCTTTTACGAATACGCC 59.371 41.667 0.00 0.00 43.96 5.68
3151 3166 1.533625 ATACGCCAAGCTTGCTTTCA 58.466 45.000 21.43 4.80 0.00 2.69
3159 3174 3.366679 CCAAGCTTGCTTTCACGAATCAT 60.367 43.478 21.43 0.00 0.00 2.45
3285 3300 6.149308 TCGTTCAGATTACAAATCATTGCAGT 59.851 34.615 2.74 0.00 40.34 4.40
3343 3358 6.327386 AGGAATCATAAGCCTTTTACTCCA 57.673 37.500 0.00 0.00 0.00 3.86
3364 3379 9.178758 ACTCCATATTTTCTTAAACCTGATGTC 57.821 33.333 0.00 0.00 0.00 3.06
3444 3461 8.150296 TGTTGTTCTGTCAGAATTCATTAGAGA 58.850 33.333 18.08 3.14 36.50 3.10
3445 3462 8.655092 GTTGTTCTGTCAGAATTCATTAGAGAG 58.345 37.037 18.08 7.89 36.50 3.20
3446 3463 8.127150 TGTTCTGTCAGAATTCATTAGAGAGA 57.873 34.615 18.08 9.90 36.50 3.10
3455 3472 6.533367 AGAATTCATTAGAGAGAGCACGAAAC 59.467 38.462 8.44 0.00 0.00 2.78
3482 3499 3.062774 GCTGGACGAATCAAAAGTAGCTC 59.937 47.826 0.00 0.00 0.00 4.09
3505 3522 2.851263 TCCGTCAAATAGTTGGCAGT 57.149 45.000 8.38 0.00 39.45 4.40
3512 3529 4.016444 TCAAATAGTTGGCAGTGGATTCC 58.984 43.478 2.65 0.00 35.29 3.01
3522 3539 2.357154 GCAGTGGATTCCCTGGTATTGT 60.357 50.000 17.62 0.00 0.00 2.71
3561 3578 4.943705 ACATCCAATGATACCAACACTCAC 59.056 41.667 0.00 0.00 0.00 3.51
3584 3601 5.297278 ACATCAGACCGTGATACTAACTCTC 59.703 44.000 0.00 0.00 44.73 3.20
3624 3641 9.696917 GGAAGTTCTCAAAAATATTGTCAATGT 57.303 29.630 8.39 0.00 0.00 2.71
3733 3752 9.696917 AACTTTTAGTAATCAAATTGAAGGCAG 57.303 29.630 0.00 0.00 0.00 4.85
3734 3753 8.860088 ACTTTTAGTAATCAAATTGAAGGCAGT 58.140 29.630 0.00 0.00 0.00 4.40
3737 3756 8.506168 TTAGTAATCAAATTGAAGGCAGTAGG 57.494 34.615 0.00 0.00 0.00 3.18
3738 3757 6.485171 AGTAATCAAATTGAAGGCAGTAGGT 58.515 36.000 0.00 0.00 0.00 3.08
3739 3758 6.948309 AGTAATCAAATTGAAGGCAGTAGGTT 59.052 34.615 0.00 0.00 0.00 3.50
3740 3759 5.649782 ATCAAATTGAAGGCAGTAGGTTG 57.350 39.130 0.00 0.00 0.00 3.77
3741 3760 3.826157 TCAAATTGAAGGCAGTAGGTTGG 59.174 43.478 0.00 0.00 0.00 3.77
3742 3761 3.806949 AATTGAAGGCAGTAGGTTGGA 57.193 42.857 0.00 0.00 0.00 3.53
3743 3762 2.859165 TTGAAGGCAGTAGGTTGGAG 57.141 50.000 0.00 0.00 0.00 3.86
3744 3763 2.024176 TGAAGGCAGTAGGTTGGAGA 57.976 50.000 0.00 0.00 0.00 3.71
3745 3764 2.334977 TGAAGGCAGTAGGTTGGAGAA 58.665 47.619 0.00 0.00 0.00 2.87
3746 3765 2.708861 TGAAGGCAGTAGGTTGGAGAAA 59.291 45.455 0.00 0.00 0.00 2.52
3747 3766 3.137544 TGAAGGCAGTAGGTTGGAGAAAA 59.862 43.478 0.00 0.00 0.00 2.29
3748 3767 3.141767 AGGCAGTAGGTTGGAGAAAAC 57.858 47.619 0.00 0.00 0.00 2.43
3749 3768 2.711547 AGGCAGTAGGTTGGAGAAAACT 59.288 45.455 0.00 0.00 39.81 2.66
3750 3769 3.075148 GGCAGTAGGTTGGAGAAAACTC 58.925 50.000 0.00 0.00 36.99 3.01
3751 3770 3.244596 GGCAGTAGGTTGGAGAAAACTCT 60.245 47.826 0.00 0.00 36.99 3.24
3752 3771 4.020485 GGCAGTAGGTTGGAGAAAACTCTA 60.020 45.833 0.00 0.00 36.99 2.43
3753 3772 5.172205 GCAGTAGGTTGGAGAAAACTCTAG 58.828 45.833 0.00 0.00 36.99 2.43
3754 3773 5.047235 GCAGTAGGTTGGAGAAAACTCTAGA 60.047 44.000 0.00 0.00 36.99 2.43
3755 3774 6.518537 GCAGTAGGTTGGAGAAAACTCTAGAA 60.519 42.308 0.00 0.00 36.99 2.10
3756 3775 7.616313 CAGTAGGTTGGAGAAAACTCTAGAAT 58.384 38.462 0.00 0.00 36.99 2.40
3757 3776 7.762159 CAGTAGGTTGGAGAAAACTCTAGAATC 59.238 40.741 0.00 0.00 36.99 2.52
3758 3777 6.943899 AGGTTGGAGAAAACTCTAGAATCT 57.056 37.500 0.00 0.00 24.77 2.40
3759 3778 6.941857 AGGTTGGAGAAAACTCTAGAATCTC 58.058 40.000 12.64 12.64 24.77 2.75
3760 3779 6.728632 AGGTTGGAGAAAACTCTAGAATCTCT 59.271 38.462 17.25 8.10 37.33 3.10
3761 3780 7.896496 AGGTTGGAGAAAACTCTAGAATCTCTA 59.104 37.037 17.25 12.21 37.33 2.43
3762 3781 8.700973 GGTTGGAGAAAACTCTAGAATCTCTAT 58.299 37.037 17.25 0.00 37.33 1.98
3763 3782 9.744468 GTTGGAGAAAACTCTAGAATCTCTATC 57.256 37.037 17.25 10.87 37.33 2.08
3764 3783 8.472007 TGGAGAAAACTCTAGAATCTCTATCC 57.528 38.462 17.25 10.46 37.33 2.59
3765 3784 8.285891 TGGAGAAAACTCTAGAATCTCTATCCT 58.714 37.037 17.25 0.00 37.33 3.24
3766 3785 8.793592 GGAGAAAACTCTAGAATCTCTATCCTC 58.206 40.741 17.25 6.87 37.33 3.71
3767 3786 9.574516 GAGAAAACTCTAGAATCTCTATCCTCT 57.425 37.037 13.33 0.00 34.94 3.69
3768 3787 9.936329 AGAAAACTCTAGAATCTCTATCCTCTT 57.064 33.333 0.00 0.00 0.00 2.85
3773 3792 9.166222 ACTCTAGAATCTCTATCCTCTTACTCA 57.834 37.037 0.00 0.00 0.00 3.41
3774 3793 9.658799 CTCTAGAATCTCTATCCTCTTACTCAG 57.341 40.741 0.00 0.00 0.00 3.35
3775 3794 8.100791 TCTAGAATCTCTATCCTCTTACTCAGC 58.899 40.741 0.00 0.00 0.00 4.26
3776 3795 6.852404 AGAATCTCTATCCTCTTACTCAGCT 58.148 40.000 0.00 0.00 0.00 4.24
3777 3796 6.716628 AGAATCTCTATCCTCTTACTCAGCTG 59.283 42.308 7.63 7.63 0.00 4.24
3778 3797 4.141287 TCTCTATCCTCTTACTCAGCTGC 58.859 47.826 9.47 0.00 0.00 5.25
3779 3798 4.141274 TCTCTATCCTCTTACTCAGCTGCT 60.141 45.833 9.47 0.00 0.00 4.24
3780 3799 5.072464 TCTCTATCCTCTTACTCAGCTGCTA 59.928 44.000 9.47 0.00 0.00 3.49
3781 3800 5.886609 TCTATCCTCTTACTCAGCTGCTAT 58.113 41.667 9.47 0.00 0.00 2.97
3782 3801 7.021998 TCTATCCTCTTACTCAGCTGCTATA 57.978 40.000 9.47 0.00 0.00 1.31
3783 3802 5.975693 ATCCTCTTACTCAGCTGCTATAC 57.024 43.478 9.47 0.00 0.00 1.47
3784 3803 4.793201 TCCTCTTACTCAGCTGCTATACA 58.207 43.478 9.47 0.00 0.00 2.29
3785 3804 5.389520 TCCTCTTACTCAGCTGCTATACAT 58.610 41.667 9.47 0.00 0.00 2.29
3786 3805 6.543735 TCCTCTTACTCAGCTGCTATACATA 58.456 40.000 9.47 0.00 0.00 2.29
3787 3806 7.178573 TCCTCTTACTCAGCTGCTATACATAT 58.821 38.462 9.47 0.00 0.00 1.78
3788 3807 8.329502 TCCTCTTACTCAGCTGCTATACATATA 58.670 37.037 9.47 0.00 0.00 0.86
3789 3808 8.620416 CCTCTTACTCAGCTGCTATACATATAG 58.380 40.741 9.47 0.00 38.89 1.31
3790 3809 9.389755 CTCTTACTCAGCTGCTATACATATAGA 57.610 37.037 9.47 0.33 38.30 1.98
3791 3810 9.913310 TCTTACTCAGCTGCTATACATATAGAT 57.087 33.333 9.47 0.00 38.30 1.98
3810 3829 5.878406 AGATATATGCTACAGGTATGGGC 57.122 43.478 0.00 0.00 0.00 5.36
3811 3830 4.656112 AGATATATGCTACAGGTATGGGCC 59.344 45.833 0.00 0.00 0.00 5.80
3812 3831 1.358152 TATGCTACAGGTATGGGCCC 58.642 55.000 17.59 17.59 0.00 5.80
3813 3832 0.401979 ATGCTACAGGTATGGGCCCT 60.402 55.000 25.70 11.37 0.00 5.19
3814 3833 0.623324 TGCTACAGGTATGGGCCCTT 60.623 55.000 25.70 20.41 0.00 3.95
3815 3834 0.551396 GCTACAGGTATGGGCCCTTT 59.449 55.000 25.70 13.47 0.00 3.11
3816 3835 1.750682 GCTACAGGTATGGGCCCTTTG 60.751 57.143 25.70 14.59 0.00 2.77
3817 3836 0.923358 TACAGGTATGGGCCCTTTGG 59.077 55.000 25.70 10.21 0.00 3.28
3828 3847 3.372557 CCCTTTGGGCCATAACACA 57.627 52.632 7.26 0.00 35.35 3.72
3829 3848 0.894835 CCCTTTGGGCCATAACACAC 59.105 55.000 7.26 0.00 35.35 3.82
3830 3849 1.626686 CCTTTGGGCCATAACACACA 58.373 50.000 7.26 0.00 0.00 3.72
3831 3850 1.272212 CCTTTGGGCCATAACACACAC 59.728 52.381 7.26 0.00 0.00 3.82
3832 3851 1.959985 CTTTGGGCCATAACACACACA 59.040 47.619 7.26 0.00 0.00 3.72
3833 3852 1.323412 TTGGGCCATAACACACACAC 58.677 50.000 7.26 0.00 0.00 3.82
3834 3853 0.183731 TGGGCCATAACACACACACA 59.816 50.000 0.00 0.00 0.00 3.72
3835 3854 1.323412 GGGCCATAACACACACACAA 58.677 50.000 4.39 0.00 0.00 3.33
3836 3855 1.683917 GGGCCATAACACACACACAAA 59.316 47.619 4.39 0.00 0.00 2.83
3837 3856 2.544903 GGGCCATAACACACACACAAAC 60.545 50.000 4.39 0.00 0.00 2.93
3838 3857 2.099921 GGCCATAACACACACACAAACA 59.900 45.455 0.00 0.00 0.00 2.83
3839 3858 3.112580 GCCATAACACACACACAAACAC 58.887 45.455 0.00 0.00 0.00 3.32
3840 3859 3.428180 GCCATAACACACACACAAACACA 60.428 43.478 0.00 0.00 0.00 3.72
3841 3860 4.738124 CCATAACACACACACAAACACAA 58.262 39.130 0.00 0.00 0.00 3.33
3842 3861 4.560819 CCATAACACACACACAAACACAAC 59.439 41.667 0.00 0.00 0.00 3.32
3843 3862 2.715737 ACACACACACAAACACAACC 57.284 45.000 0.00 0.00 0.00 3.77
3844 3863 1.271102 ACACACACACAAACACAACCC 59.729 47.619 0.00 0.00 0.00 4.11
3845 3864 1.270826 CACACACACAAACACAACCCA 59.729 47.619 0.00 0.00 0.00 4.51
3846 3865 1.964223 ACACACACAAACACAACCCAA 59.036 42.857 0.00 0.00 0.00 4.12
3847 3866 2.288518 ACACACACAAACACAACCCAAC 60.289 45.455 0.00 0.00 0.00 3.77
3848 3867 1.964223 ACACACAAACACAACCCAACA 59.036 42.857 0.00 0.00 0.00 3.33
3849 3868 2.564947 ACACACAAACACAACCCAACAT 59.435 40.909 0.00 0.00 0.00 2.71
3850 3869 3.007398 ACACACAAACACAACCCAACATT 59.993 39.130 0.00 0.00 0.00 2.71
3851 3870 3.616379 CACACAAACACAACCCAACATTC 59.384 43.478 0.00 0.00 0.00 2.67
3852 3871 3.194062 CACAAACACAACCCAACATTCC 58.806 45.455 0.00 0.00 0.00 3.01
3853 3872 2.169561 ACAAACACAACCCAACATTCCC 59.830 45.455 0.00 0.00 0.00 3.97
3854 3873 1.419381 AACACAACCCAACATTCCCC 58.581 50.000 0.00 0.00 0.00 4.81
3855 3874 0.471022 ACACAACCCAACATTCCCCC 60.471 55.000 0.00 0.00 0.00 5.40
3856 3875 0.178935 CACAACCCAACATTCCCCCT 60.179 55.000 0.00 0.00 0.00 4.79
3857 3876 0.114364 ACAACCCAACATTCCCCCTC 59.886 55.000 0.00 0.00 0.00 4.30
3858 3877 0.114168 CAACCCAACATTCCCCCTCA 59.886 55.000 0.00 0.00 0.00 3.86
3859 3878 0.863956 AACCCAACATTCCCCCTCAA 59.136 50.000 0.00 0.00 0.00 3.02
3860 3879 0.409484 ACCCAACATTCCCCCTCAAG 59.591 55.000 0.00 0.00 0.00 3.02
3861 3880 0.704076 CCCAACATTCCCCCTCAAGA 59.296 55.000 0.00 0.00 0.00 3.02
3862 3881 1.288932 CCCAACATTCCCCCTCAAGAT 59.711 52.381 0.00 0.00 0.00 2.40
3863 3882 2.381911 CCAACATTCCCCCTCAAGATG 58.618 52.381 0.00 0.00 0.00 2.90
3864 3883 2.381911 CAACATTCCCCCTCAAGATGG 58.618 52.381 0.00 0.00 0.00 3.51
3865 3884 0.929244 ACATTCCCCCTCAAGATGGG 59.071 55.000 3.64 3.64 44.19 4.00
3866 3885 0.929244 CATTCCCCCTCAAGATGGGT 59.071 55.000 9.22 0.00 43.09 4.51
3867 3886 0.929244 ATTCCCCCTCAAGATGGGTG 59.071 55.000 9.22 2.24 43.09 4.61
3868 3887 0.178846 TTCCCCCTCAAGATGGGTGA 60.179 55.000 9.22 4.25 43.09 4.02
3869 3888 0.046242 TCCCCCTCAAGATGGGTGAT 59.954 55.000 9.22 0.00 43.09 3.06
3870 3889 1.296832 TCCCCCTCAAGATGGGTGATA 59.703 52.381 9.22 0.00 43.09 2.15
3871 3890 1.701847 CCCCCTCAAGATGGGTGATAG 59.298 57.143 9.22 0.00 43.09 2.08
3872 3891 2.694397 CCCCTCAAGATGGGTGATAGA 58.306 52.381 2.54 0.00 43.09 1.98
3873 3892 3.254960 CCCCTCAAGATGGGTGATAGAT 58.745 50.000 2.54 0.00 43.09 1.98
3874 3893 4.429505 CCCCTCAAGATGGGTGATAGATA 58.570 47.826 2.54 0.00 43.09 1.98
3875 3894 5.035556 CCCCTCAAGATGGGTGATAGATAT 58.964 45.833 2.54 0.00 43.09 1.63
3876 3895 5.130145 CCCCTCAAGATGGGTGATAGATATC 59.870 48.000 2.54 0.00 43.09 1.63
3877 3896 5.163468 CCCTCAAGATGGGTGATAGATATCG 60.163 48.000 0.00 0.00 39.82 2.92
3878 3897 5.163468 CCTCAAGATGGGTGATAGATATCGG 60.163 48.000 0.00 0.00 35.48 4.18
3879 3898 5.333581 TCAAGATGGGTGATAGATATCGGT 58.666 41.667 0.00 0.00 35.48 4.69
3880 3899 5.419155 TCAAGATGGGTGATAGATATCGGTC 59.581 44.000 0.00 0.51 35.48 4.79
3881 3900 4.935578 AGATGGGTGATAGATATCGGTCA 58.064 43.478 8.45 8.45 35.48 4.02
3882 3901 5.523588 AGATGGGTGATAGATATCGGTCAT 58.476 41.667 13.73 5.74 35.48 3.06
3883 3902 5.596361 AGATGGGTGATAGATATCGGTCATC 59.404 44.000 13.73 13.13 36.34 2.92
3884 3903 4.023980 TGGGTGATAGATATCGGTCATCC 58.976 47.826 24.50 24.50 41.28 3.51
3885 3904 3.385111 GGGTGATAGATATCGGTCATCCC 59.615 52.174 22.37 21.57 36.15 3.85
3886 3905 3.385111 GGTGATAGATATCGGTCATCCCC 59.615 52.174 13.73 8.63 35.48 4.81
3887 3906 4.023980 GTGATAGATATCGGTCATCCCCA 58.976 47.826 13.73 0.00 35.48 4.96
3888 3907 4.651503 GTGATAGATATCGGTCATCCCCAT 59.348 45.833 13.73 0.00 35.48 4.00
3889 3908 4.895889 TGATAGATATCGGTCATCCCCATC 59.104 45.833 8.45 0.00 35.48 3.51
3890 3909 3.481559 AGATATCGGTCATCCCCATCT 57.518 47.619 0.00 0.00 0.00 2.90
3891 3910 3.796111 AGATATCGGTCATCCCCATCTT 58.204 45.455 0.00 0.00 0.00 2.40
3892 3911 3.517100 AGATATCGGTCATCCCCATCTTG 59.483 47.826 0.00 0.00 0.00 3.02
3893 3912 0.109342 ATCGGTCATCCCCATCTTGC 59.891 55.000 0.00 0.00 0.00 4.01
3894 3913 0.982852 TCGGTCATCCCCATCTTGCT 60.983 55.000 0.00 0.00 0.00 3.91
3895 3914 0.758734 CGGTCATCCCCATCTTGCTA 59.241 55.000 0.00 0.00 0.00 3.49
3896 3915 1.541233 CGGTCATCCCCATCTTGCTAC 60.541 57.143 0.00 0.00 0.00 3.58
3897 3916 1.490490 GGTCATCCCCATCTTGCTACA 59.510 52.381 0.00 0.00 0.00 2.74
3898 3917 2.107204 GGTCATCCCCATCTTGCTACAT 59.893 50.000 0.00 0.00 0.00 2.29
3899 3918 3.144506 GTCATCCCCATCTTGCTACATG 58.855 50.000 0.00 0.00 0.00 3.21
3900 3919 1.884579 CATCCCCATCTTGCTACATGC 59.115 52.381 0.00 0.00 43.25 4.06
3901 3920 1.216064 TCCCCATCTTGCTACATGCT 58.784 50.000 0.00 0.00 43.37 3.79
3902 3921 1.134007 TCCCCATCTTGCTACATGCTG 60.134 52.381 0.00 0.00 43.37 4.41
3903 3922 1.134007 CCCCATCTTGCTACATGCTGA 60.134 52.381 0.00 0.00 43.37 4.26
3904 3923 2.646930 CCCATCTTGCTACATGCTGAA 58.353 47.619 0.00 0.00 43.37 3.02
3905 3924 3.220110 CCCATCTTGCTACATGCTGAAT 58.780 45.455 0.00 0.00 43.37 2.57
3906 3925 3.252701 CCCATCTTGCTACATGCTGAATC 59.747 47.826 0.00 0.00 43.37 2.52
3907 3926 3.881089 CCATCTTGCTACATGCTGAATCA 59.119 43.478 0.00 0.00 43.37 2.57
3908 3927 4.261072 CCATCTTGCTACATGCTGAATCAC 60.261 45.833 0.00 0.00 43.37 3.06
3909 3928 3.941573 TCTTGCTACATGCTGAATCACA 58.058 40.909 0.00 0.00 43.37 3.58
3910 3929 3.686241 TCTTGCTACATGCTGAATCACAC 59.314 43.478 0.00 0.00 43.37 3.82
3911 3930 3.339253 TGCTACATGCTGAATCACACT 57.661 42.857 0.00 0.00 43.37 3.55
3912 3931 3.678289 TGCTACATGCTGAATCACACTT 58.322 40.909 0.00 0.00 43.37 3.16
3913 3932 3.686241 TGCTACATGCTGAATCACACTTC 59.314 43.478 0.00 0.00 43.37 3.01
3914 3933 3.064545 GCTACATGCTGAATCACACTTCC 59.935 47.826 0.00 0.00 38.95 3.46
3915 3934 3.430042 ACATGCTGAATCACACTTCCT 57.570 42.857 0.00 0.00 0.00 3.36
3916 3935 4.558226 ACATGCTGAATCACACTTCCTA 57.442 40.909 0.00 0.00 0.00 2.94
3917 3936 4.910195 ACATGCTGAATCACACTTCCTAA 58.090 39.130 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 148 5.912149 ATGAATCTCCAGGGCATAGTTTA 57.088 39.130 0.00 0.00 0.00 2.01
956 958 1.069823 AGCACACACAGAGAACTGAGG 59.930 52.381 0.00 0.00 46.03 3.86
968 970 6.036083 CCTTATATGTCAGTACAAGCACACAC 59.964 42.308 0.00 0.00 39.58 3.82
1282 1287 7.443575 CACCAGAGAGAAACTCCATATATTTGG 59.556 40.741 5.88 5.88 45.96 3.28
2424 2439 9.764363 TTGCTAATAATATTCGTTCTCTCACAT 57.236 29.630 0.00 0.00 0.00 3.21
2425 2440 9.594478 TTTGCTAATAATATTCGTTCTCTCACA 57.406 29.630 0.00 0.00 0.00 3.58
2472 2487 0.969149 AGGCAGGCAAAAGGTAAAGC 59.031 50.000 0.00 0.00 0.00 3.51
2628 2643 2.005451 CCTGGCGACAAGAGATGAAAG 58.995 52.381 0.00 0.00 42.06 2.62
2692 2707 1.153289 GTGACCTGCGGCATCTGAT 60.153 57.895 1.75 0.00 0.00 2.90
2777 2792 4.803452 AGATTTTCAAGGGAAAGGTGTCA 58.197 39.130 0.00 0.00 43.47 3.58
3023 3038 1.004277 GAACTAGGCCACCCATGAACA 59.996 52.381 5.01 0.00 0.00 3.18
3138 3153 3.272439 TGATTCGTGAAAGCAAGCTTG 57.728 42.857 22.44 22.44 36.26 4.01
3285 3300 5.818678 TTACTCCTGAGTTTGAAGGCTAA 57.181 39.130 4.94 0.00 42.54 3.09
3343 3358 7.336931 ACAGCGACATCAGGTTTAAGAAAATAT 59.663 33.333 0.00 0.00 0.00 1.28
3362 3377 4.725556 TGAAAGTATGAAACACAGCGAC 57.274 40.909 0.00 0.00 0.00 5.19
3364 3379 5.281693 TCATGAAAGTATGAAACACAGCG 57.718 39.130 0.00 0.00 34.32 5.18
3460 3477 3.003480 AGCTACTTTTGATTCGTCCAGC 58.997 45.455 0.00 0.00 0.00 4.85
3461 3478 4.245660 TGAGCTACTTTTGATTCGTCCAG 58.754 43.478 0.00 0.00 0.00 3.86
3471 3488 5.356882 TTGACGGAAATGAGCTACTTTTG 57.643 39.130 0.00 0.00 0.00 2.44
3472 3489 6.575162 ATTTGACGGAAATGAGCTACTTTT 57.425 33.333 0.00 0.00 32.69 2.27
3482 3499 4.082787 ACTGCCAACTATTTGACGGAAATG 60.083 41.667 5.24 0.00 35.74 2.32
3505 3522 3.189606 AGTGACAATACCAGGGAATCCA 58.810 45.455 0.09 0.00 34.83 3.41
3512 3529 4.759782 CTCCACTTAGTGACAATACCAGG 58.240 47.826 14.66 0.00 35.23 4.45
3522 3539 2.028112 GGATGTGTGCTCCACTTAGTGA 60.028 50.000 14.66 0.00 44.81 3.41
3561 3578 5.559225 CGAGAGTTAGTATCACGGTCTGATG 60.559 48.000 0.00 0.00 40.12 3.07
3584 3601 5.050363 TGAGAACTTCCGAGTTTGAAATTCG 60.050 40.000 14.70 14.70 45.88 3.34
3707 3726 9.696917 CTGCCTTCAATTTGATTACTAAAAGTT 57.303 29.630 0.00 0.00 0.00 2.66
3708 3727 8.860088 ACTGCCTTCAATTTGATTACTAAAAGT 58.140 29.630 0.00 0.00 0.00 2.66
3711 3730 8.956426 CCTACTGCCTTCAATTTGATTACTAAA 58.044 33.333 0.00 0.00 0.00 1.85
3712 3731 8.107095 ACCTACTGCCTTCAATTTGATTACTAA 58.893 33.333 0.00 0.00 0.00 2.24
3713 3732 7.630082 ACCTACTGCCTTCAATTTGATTACTA 58.370 34.615 0.00 0.00 0.00 1.82
3714 3733 6.485171 ACCTACTGCCTTCAATTTGATTACT 58.515 36.000 0.00 0.00 0.00 2.24
3715 3734 6.759497 ACCTACTGCCTTCAATTTGATTAC 57.241 37.500 0.00 0.00 0.00 1.89
3716 3735 6.152661 CCAACCTACTGCCTTCAATTTGATTA 59.847 38.462 0.00 0.00 0.00 1.75
3717 3736 5.047092 CCAACCTACTGCCTTCAATTTGATT 60.047 40.000 0.00 0.00 0.00 2.57
3718 3737 4.463891 CCAACCTACTGCCTTCAATTTGAT 59.536 41.667 0.00 0.00 0.00 2.57
3719 3738 3.826157 CCAACCTACTGCCTTCAATTTGA 59.174 43.478 0.00 0.00 0.00 2.69
3720 3739 3.826157 TCCAACCTACTGCCTTCAATTTG 59.174 43.478 0.00 0.00 0.00 2.32
3721 3740 4.082125 CTCCAACCTACTGCCTTCAATTT 58.918 43.478 0.00 0.00 0.00 1.82
3722 3741 3.330701 TCTCCAACCTACTGCCTTCAATT 59.669 43.478 0.00 0.00 0.00 2.32
3723 3742 2.912956 TCTCCAACCTACTGCCTTCAAT 59.087 45.455 0.00 0.00 0.00 2.57
3724 3743 2.334977 TCTCCAACCTACTGCCTTCAA 58.665 47.619 0.00 0.00 0.00 2.69
3725 3744 2.024176 TCTCCAACCTACTGCCTTCA 57.976 50.000 0.00 0.00 0.00 3.02
3726 3745 3.418684 TTTCTCCAACCTACTGCCTTC 57.581 47.619 0.00 0.00 0.00 3.46
3727 3746 3.138468 AGTTTTCTCCAACCTACTGCCTT 59.862 43.478 0.00 0.00 0.00 4.35
3728 3747 2.711547 AGTTTTCTCCAACCTACTGCCT 59.288 45.455 0.00 0.00 0.00 4.75
3729 3748 3.075148 GAGTTTTCTCCAACCTACTGCC 58.925 50.000 0.00 0.00 40.79 4.85
3741 3760 9.574516 AGAGGATAGAGATTCTAGAGTTTTCTC 57.425 37.037 12.56 12.56 46.50 2.87
3742 3761 9.936329 AAGAGGATAGAGATTCTAGAGTTTTCT 57.064 33.333 0.00 0.97 31.67 2.52
3747 3766 9.166222 TGAGTAAGAGGATAGAGATTCTAGAGT 57.834 37.037 0.00 0.00 31.67 3.24
3748 3767 9.658799 CTGAGTAAGAGGATAGAGATTCTAGAG 57.341 40.741 0.00 0.00 31.67 2.43
3749 3768 8.100791 GCTGAGTAAGAGGATAGAGATTCTAGA 58.899 40.741 0.00 0.00 31.67 2.43
3750 3769 8.103305 AGCTGAGTAAGAGGATAGAGATTCTAG 58.897 40.741 0.00 0.00 31.67 2.43
3751 3770 7.882791 CAGCTGAGTAAGAGGATAGAGATTCTA 59.117 40.741 8.42 0.00 32.87 2.10
3752 3771 6.716628 CAGCTGAGTAAGAGGATAGAGATTCT 59.283 42.308 8.42 0.00 0.00 2.40
3753 3772 6.570378 GCAGCTGAGTAAGAGGATAGAGATTC 60.570 46.154 20.43 0.00 0.00 2.52
3754 3773 5.243730 GCAGCTGAGTAAGAGGATAGAGATT 59.756 44.000 20.43 0.00 0.00 2.40
3755 3774 4.766891 GCAGCTGAGTAAGAGGATAGAGAT 59.233 45.833 20.43 0.00 0.00 2.75
3756 3775 4.141274 AGCAGCTGAGTAAGAGGATAGAGA 60.141 45.833 20.43 0.00 0.00 3.10
3757 3776 4.144297 AGCAGCTGAGTAAGAGGATAGAG 58.856 47.826 20.43 0.00 0.00 2.43
3758 3777 4.177537 AGCAGCTGAGTAAGAGGATAGA 57.822 45.455 20.43 0.00 0.00 1.98
3759 3778 6.657117 TGTATAGCAGCTGAGTAAGAGGATAG 59.343 42.308 20.43 0.00 0.00 2.08
3760 3779 6.543735 TGTATAGCAGCTGAGTAAGAGGATA 58.456 40.000 20.43 0.00 0.00 2.59
3761 3780 5.389520 TGTATAGCAGCTGAGTAAGAGGAT 58.610 41.667 20.43 0.00 0.00 3.24
3762 3781 4.793201 TGTATAGCAGCTGAGTAAGAGGA 58.207 43.478 20.43 0.00 0.00 3.71
3763 3782 5.720371 ATGTATAGCAGCTGAGTAAGAGG 57.280 43.478 20.43 0.00 0.00 3.69
3764 3783 9.389755 TCTATATGTATAGCAGCTGAGTAAGAG 57.610 37.037 20.43 1.42 36.47 2.85
3765 3784 9.913310 ATCTATATGTATAGCAGCTGAGTAAGA 57.087 33.333 20.43 6.16 36.47 2.10
3784 3803 9.261035 GCCCATACCTGTAGCATATATCTATAT 57.739 37.037 0.00 0.00 0.00 0.86
3785 3804 7.674348 GGCCCATACCTGTAGCATATATCTATA 59.326 40.741 0.00 0.00 0.00 1.31
3786 3805 6.498651 GGCCCATACCTGTAGCATATATCTAT 59.501 42.308 0.00 0.00 0.00 1.98
3787 3806 5.839063 GGCCCATACCTGTAGCATATATCTA 59.161 44.000 0.00 0.00 0.00 1.98
3788 3807 4.656112 GGCCCATACCTGTAGCATATATCT 59.344 45.833 0.00 0.00 0.00 1.98
3789 3808 4.202367 GGGCCCATACCTGTAGCATATATC 60.202 50.000 19.95 0.00 0.00 1.63
3790 3809 3.716872 GGGCCCATACCTGTAGCATATAT 59.283 47.826 19.95 0.00 0.00 0.86
3791 3810 3.112263 GGGCCCATACCTGTAGCATATA 58.888 50.000 19.95 0.00 0.00 0.86
3792 3811 1.916181 GGGCCCATACCTGTAGCATAT 59.084 52.381 19.95 0.00 0.00 1.78
3793 3812 1.132527 AGGGCCCATACCTGTAGCATA 60.133 52.381 27.56 0.00 36.85 3.14
3794 3813 0.401979 AGGGCCCATACCTGTAGCAT 60.402 55.000 27.56 0.00 36.85 3.79
3795 3814 0.623324 AAGGGCCCATACCTGTAGCA 60.623 55.000 27.56 0.00 38.63 3.49
3796 3815 0.551396 AAAGGGCCCATACCTGTAGC 59.449 55.000 27.56 0.00 38.63 3.58
3797 3816 1.133792 CCAAAGGGCCCATACCTGTAG 60.134 57.143 27.56 2.48 38.63 2.74
3798 3817 0.923358 CCAAAGGGCCCATACCTGTA 59.077 55.000 27.56 0.00 38.63 2.74
3799 3818 1.697297 CCAAAGGGCCCATACCTGT 59.303 57.895 27.56 0.00 38.63 4.00
3800 3819 1.076044 CCCAAAGGGCCCATACCTG 60.076 63.158 27.56 12.85 38.63 4.00
3801 3820 3.438822 CCCAAAGGGCCCATACCT 58.561 61.111 27.56 0.00 40.96 3.08
3811 3830 1.272212 GTGTGTGTTATGGCCCAAAGG 59.728 52.381 0.00 0.00 0.00 3.11
3812 3831 1.959985 TGTGTGTGTTATGGCCCAAAG 59.040 47.619 0.00 0.00 0.00 2.77
3813 3832 1.683917 GTGTGTGTGTTATGGCCCAAA 59.316 47.619 0.00 0.00 0.00 3.28
3814 3833 1.323412 GTGTGTGTGTTATGGCCCAA 58.677 50.000 0.00 0.00 0.00 4.12
3815 3834 0.183731 TGTGTGTGTGTTATGGCCCA 59.816 50.000 0.00 0.00 0.00 5.36
3816 3835 1.323412 TTGTGTGTGTGTTATGGCCC 58.677 50.000 0.00 0.00 0.00 5.80
3817 3836 2.099921 TGTTTGTGTGTGTGTTATGGCC 59.900 45.455 0.00 0.00 0.00 5.36
3818 3837 3.112580 GTGTTTGTGTGTGTGTTATGGC 58.887 45.455 0.00 0.00 0.00 4.40
3819 3838 4.362932 TGTGTTTGTGTGTGTGTTATGG 57.637 40.909 0.00 0.00 0.00 2.74
3820 3839 4.560819 GGTTGTGTTTGTGTGTGTGTTATG 59.439 41.667 0.00 0.00 0.00 1.90
3821 3840 4.381079 GGGTTGTGTTTGTGTGTGTGTTAT 60.381 41.667 0.00 0.00 0.00 1.89
3822 3841 3.057456 GGGTTGTGTTTGTGTGTGTGTTA 60.057 43.478 0.00 0.00 0.00 2.41
3823 3842 2.288518 GGGTTGTGTTTGTGTGTGTGTT 60.289 45.455 0.00 0.00 0.00 3.32
3824 3843 1.271102 GGGTTGTGTTTGTGTGTGTGT 59.729 47.619 0.00 0.00 0.00 3.72
3825 3844 1.270826 TGGGTTGTGTTTGTGTGTGTG 59.729 47.619 0.00 0.00 0.00 3.82
3826 3845 1.621992 TGGGTTGTGTTTGTGTGTGT 58.378 45.000 0.00 0.00 0.00 3.72
3827 3846 2.288457 TGTTGGGTTGTGTTTGTGTGTG 60.288 45.455 0.00 0.00 0.00 3.82
3828 3847 1.964223 TGTTGGGTTGTGTTTGTGTGT 59.036 42.857 0.00 0.00 0.00 3.72
3829 3848 2.732412 TGTTGGGTTGTGTTTGTGTG 57.268 45.000 0.00 0.00 0.00 3.82
3830 3849 3.368948 GGAATGTTGGGTTGTGTTTGTGT 60.369 43.478 0.00 0.00 0.00 3.72
3831 3850 3.194062 GGAATGTTGGGTTGTGTTTGTG 58.806 45.455 0.00 0.00 0.00 3.33
3832 3851 2.169561 GGGAATGTTGGGTTGTGTTTGT 59.830 45.455 0.00 0.00 0.00 2.83
3833 3852 2.484594 GGGGAATGTTGGGTTGTGTTTG 60.485 50.000 0.00 0.00 0.00 2.93
3834 3853 1.765904 GGGGAATGTTGGGTTGTGTTT 59.234 47.619 0.00 0.00 0.00 2.83
3835 3854 1.419381 GGGGAATGTTGGGTTGTGTT 58.581 50.000 0.00 0.00 0.00 3.32
3836 3855 0.471022 GGGGGAATGTTGGGTTGTGT 60.471 55.000 0.00 0.00 0.00 3.72
3837 3856 0.178935 AGGGGGAATGTTGGGTTGTG 60.179 55.000 0.00 0.00 0.00 3.33
3838 3857 0.114364 GAGGGGGAATGTTGGGTTGT 59.886 55.000 0.00 0.00 0.00 3.32
3839 3858 0.114168 TGAGGGGGAATGTTGGGTTG 59.886 55.000 0.00 0.00 0.00 3.77
3840 3859 0.863956 TTGAGGGGGAATGTTGGGTT 59.136 50.000 0.00 0.00 0.00 4.11
3841 3860 0.409484 CTTGAGGGGGAATGTTGGGT 59.591 55.000 0.00 0.00 0.00 4.51
3842 3861 0.704076 TCTTGAGGGGGAATGTTGGG 59.296 55.000 0.00 0.00 0.00 4.12
3843 3862 2.381911 CATCTTGAGGGGGAATGTTGG 58.618 52.381 0.00 0.00 0.00 3.77
3844 3863 2.381911 CCATCTTGAGGGGGAATGTTG 58.618 52.381 0.00 0.00 0.00 3.33
3845 3864 1.288932 CCCATCTTGAGGGGGAATGTT 59.711 52.381 12.16 0.00 45.08 2.71
3846 3865 0.929244 CCCATCTTGAGGGGGAATGT 59.071 55.000 12.16 0.00 45.08 2.71
3847 3866 3.835810 CCCATCTTGAGGGGGAATG 57.164 57.895 12.16 0.00 45.08 2.67
3854 3873 5.163468 CCGATATCTATCACCCATCTTGAGG 60.163 48.000 0.34 0.00 32.98 3.86
3855 3874 5.420421 ACCGATATCTATCACCCATCTTGAG 59.580 44.000 0.34 0.00 32.98 3.02
3856 3875 5.333581 ACCGATATCTATCACCCATCTTGA 58.666 41.667 0.34 0.00 32.98 3.02
3857 3876 5.185828 TGACCGATATCTATCACCCATCTTG 59.814 44.000 0.34 0.00 32.98 3.02
3858 3877 5.333581 TGACCGATATCTATCACCCATCTT 58.666 41.667 0.34 0.00 32.98 2.40
3859 3878 4.935578 TGACCGATATCTATCACCCATCT 58.064 43.478 0.34 0.00 32.98 2.90
3860 3879 5.221342 GGATGACCGATATCTATCACCCATC 60.221 48.000 10.35 8.24 34.31 3.51
3861 3880 4.651503 GGATGACCGATATCTATCACCCAT 59.348 45.833 10.35 1.29 32.98 4.00
3862 3881 4.023980 GGATGACCGATATCTATCACCCA 58.976 47.826 10.35 0.00 32.98 4.51
3863 3882 3.385111 GGGATGACCGATATCTATCACCC 59.615 52.174 17.78 17.78 36.97 4.61
3864 3883 3.385111 GGGGATGACCGATATCTATCACC 59.615 52.174 7.68 8.93 41.60 4.02
3865 3884 4.023980 TGGGGATGACCGATATCTATCAC 58.976 47.826 7.68 4.56 41.60 3.06
3866 3885 4.331159 TGGGGATGACCGATATCTATCA 57.669 45.455 7.90 7.90 41.60 2.15
3867 3886 5.144100 AGATGGGGATGACCGATATCTATC 58.856 45.833 0.34 0.00 37.86 2.08
3868 3887 5.149584 AGATGGGGATGACCGATATCTAT 57.850 43.478 0.34 0.00 37.86 1.98
3869 3888 4.609866 AGATGGGGATGACCGATATCTA 57.390 45.455 0.34 0.00 37.86 1.98
3870 3889 3.481559 AGATGGGGATGACCGATATCT 57.518 47.619 0.34 0.00 37.86 1.98
3871 3890 3.866651 CAAGATGGGGATGACCGATATC 58.133 50.000 0.00 0.00 37.86 1.63
3872 3891 2.026822 GCAAGATGGGGATGACCGATAT 60.027 50.000 0.00 0.00 37.86 1.63
3873 3892 1.347707 GCAAGATGGGGATGACCGATA 59.652 52.381 0.00 0.00 37.86 2.92
3874 3893 0.109342 GCAAGATGGGGATGACCGAT 59.891 55.000 0.00 0.00 40.82 4.18
3875 3894 0.982852 AGCAAGATGGGGATGACCGA 60.983 55.000 0.00 0.00 41.60 4.69
3876 3895 0.758734 TAGCAAGATGGGGATGACCG 59.241 55.000 0.00 0.00 41.60 4.79
3877 3896 1.490490 TGTAGCAAGATGGGGATGACC 59.510 52.381 0.00 0.00 39.11 4.02
3878 3897 3.144506 CATGTAGCAAGATGGGGATGAC 58.855 50.000 0.00 0.00 0.00 3.06
3879 3898 2.487805 GCATGTAGCAAGATGGGGATGA 60.488 50.000 0.00 0.00 44.79 2.92
3880 3899 1.884579 GCATGTAGCAAGATGGGGATG 59.115 52.381 0.00 0.00 44.79 3.51
3881 3900 2.283145 GCATGTAGCAAGATGGGGAT 57.717 50.000 0.00 0.00 44.79 3.85
3882 3901 3.806941 GCATGTAGCAAGATGGGGA 57.193 52.632 0.00 0.00 44.79 4.81
3892 3911 3.064545 GGAAGTGTGATTCAGCATGTAGC 59.935 47.826 0.00 0.00 46.19 3.58
3893 3912 4.511527 AGGAAGTGTGATTCAGCATGTAG 58.488 43.478 0.00 0.00 37.40 2.74
3894 3913 4.558226 AGGAAGTGTGATTCAGCATGTA 57.442 40.909 0.00 0.00 37.40 2.29
3895 3914 3.430042 AGGAAGTGTGATTCAGCATGT 57.570 42.857 0.00 0.00 37.40 3.21



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.