Multiple sequence alignment - TraesCS1D01G118200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G118200 chr1D 100.000 2350 0 0 1 2350 114082286 114084635 0.000000e+00 4340.0
1 TraesCS1D01G118200 chr1D 91.288 264 17 6 119 377 158109990 158109728 2.870000e-94 355.0
2 TraesCS1D01G118200 chr1D 83.077 390 35 16 973 1358 114313343 114313705 2.250000e-85 326.0
3 TraesCS1D01G118200 chr1D 81.643 414 38 22 973 1380 114064798 114065179 2.270000e-80 309.0
4 TraesCS1D01G118200 chr1B 84.652 1251 84 41 405 1606 174783322 174784513 0.000000e+00 1147.0
5 TraesCS1D01G118200 chr1B 82.493 377 31 16 973 1348 174763146 174763488 4.910000e-77 298.0
6 TraesCS1D01G118200 chr1B 81.592 402 30 20 973 1369 175275522 175275884 2.280000e-75 292.0
7 TraesCS1D01G118200 chr1B 90.164 61 1 2 5 65 174783268 174783323 9.010000e-10 75.0
8 TraesCS1D01G118200 chr1A 92.754 759 38 13 906 1652 124189706 124190459 0.000000e+00 1081.0
9 TraesCS1D01G118200 chr1A 82.203 472 29 25 403 832 124189210 124189668 2.870000e-94 355.0
10 TraesCS1D01G118200 chr1A 83.733 375 28 12 973 1347 124786920 124787261 8.100000e-85 324.0
11 TraesCS1D01G118200 chr1A 83.902 205 23 9 1751 1952 372890980 372890783 1.110000e-43 187.0
12 TraesCS1D01G118200 chr1A 90.769 65 1 1 1 65 124189148 124189207 5.380000e-12 82.4
13 TraesCS1D01G118200 chr4D 86.006 636 74 9 1720 2350 401948521 401947896 0.000000e+00 667.0
14 TraesCS1D01G118200 chr2D 92.366 262 15 5 119 376 64978228 64978488 3.690000e-98 368.0
15 TraesCS1D01G118200 chr2D 91.603 262 17 5 119 376 638340871 638340611 7.990000e-95 357.0
16 TraesCS1D01G118200 chr3B 91.045 268 19 5 113 376 168523545 168523811 7.990000e-95 357.0
17 TraesCS1D01G118200 chr3B 88.968 281 25 6 115 391 3766103 3765825 2.240000e-90 342.0
18 TraesCS1D01G118200 chr7D 91.221 262 18 5 119 376 209183667 209183927 3.720000e-93 351.0
19 TraesCS1D01G118200 chr7D 81.928 83 10 5 2210 2290 51235351 51235430 5.420000e-07 65.8
20 TraesCS1D01G118200 chr3D 91.221 262 18 5 119 376 421266630 421266370 3.720000e-93 351.0
21 TraesCS1D01G118200 chr3D 81.938 227 26 13 986 1209 85896761 85896547 6.670000e-41 178.0
22 TraesCS1D01G118200 chr3D 81.356 236 29 14 986 1209 86237276 86237044 6.670000e-41 178.0
23 TraesCS1D01G118200 chr5A 90.602 266 20 5 119 380 614360414 614360150 4.810000e-92 348.0
24 TraesCS1D01G118200 chr2B 89.744 273 23 5 119 387 475256667 475256396 6.220000e-91 344.0
25 TraesCS1D01G118200 chr4B 86.885 122 13 2 902 1020 666755947 666756068 1.470000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G118200 chr1D 114082286 114084635 2349 False 4340.000000 4340 100.000000 1 2350 1 chr1D.!!$F2 2349
1 TraesCS1D01G118200 chr1B 174783268 174784513 1245 False 611.000000 1147 87.408000 5 1606 2 chr1B.!!$F3 1601
2 TraesCS1D01G118200 chr1A 124189148 124190459 1311 False 506.133333 1081 88.575333 1 1652 3 chr1A.!!$F2 1651
3 TraesCS1D01G118200 chr4D 401947896 401948521 625 True 667.000000 667 86.006000 1720 2350 1 chr4D.!!$R1 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
849 938 0.034059 AAGCTCCTCCGTCACAACAG 59.966 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1797 1901 0.17576 TACGCCAGATCTGAGGTTGC 59.824 55.0 24.62 16.42 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 5.815740 GTGGTAATGGTTCATCAGTTCGTAT 59.184 40.000 0.00 0.00 0.00 3.06
66 67 6.982141 GTGGTAATGGTTCATCAGTTCGTATA 59.018 38.462 0.00 0.00 0.00 1.47
67 68 7.169308 GTGGTAATGGTTCATCAGTTCGTATAG 59.831 40.741 0.00 0.00 0.00 1.31
68 69 7.147794 TGGTAATGGTTCATCAGTTCGTATAGT 60.148 37.037 0.00 0.00 0.00 2.12
69 70 8.355169 GGTAATGGTTCATCAGTTCGTATAGTA 58.645 37.037 0.00 0.00 0.00 1.82
70 71 9.178427 GTAATGGTTCATCAGTTCGTATAGTAC 57.822 37.037 0.00 0.00 0.00 2.73
72 73 7.024340 TGGTTCATCAGTTCGTATAGTACTC 57.976 40.000 0.00 0.00 0.00 2.59
73 74 6.039047 TGGTTCATCAGTTCGTATAGTACTCC 59.961 42.308 0.00 0.00 0.00 3.85
74 75 6.039047 GGTTCATCAGTTCGTATAGTACTCCA 59.961 42.308 0.00 0.00 0.00 3.86
75 76 6.615264 TCATCAGTTCGTATAGTACTCCAC 57.385 41.667 0.00 0.00 0.00 4.02
76 77 5.530171 TCATCAGTTCGTATAGTACTCCACC 59.470 44.000 0.00 0.00 0.00 4.61
77 78 4.847198 TCAGTTCGTATAGTACTCCACCA 58.153 43.478 0.00 0.00 0.00 4.17
78 79 4.637534 TCAGTTCGTATAGTACTCCACCAC 59.362 45.833 0.00 0.00 0.00 4.16
79 80 3.950395 AGTTCGTATAGTACTCCACCACC 59.050 47.826 0.00 0.00 0.00 4.61
80 81 2.564771 TCGTATAGTACTCCACCACCG 58.435 52.381 0.00 0.00 0.00 4.94
81 82 1.002033 CGTATAGTACTCCACCACCGC 60.002 57.143 0.00 0.00 0.00 5.68
82 83 1.339291 GTATAGTACTCCACCACCGCC 59.661 57.143 0.00 0.00 0.00 6.13
83 84 0.324923 ATAGTACTCCACCACCGCCA 60.325 55.000 0.00 0.00 0.00 5.69
84 85 0.324923 TAGTACTCCACCACCGCCAT 60.325 55.000 0.00 0.00 0.00 4.40
85 86 0.324923 AGTACTCCACCACCGCCATA 60.325 55.000 0.00 0.00 0.00 2.74
86 87 0.538118 GTACTCCACCACCGCCATAA 59.462 55.000 0.00 0.00 0.00 1.90
87 88 1.140252 GTACTCCACCACCGCCATAAT 59.860 52.381 0.00 0.00 0.00 1.28
88 89 0.107214 ACTCCACCACCGCCATAATG 60.107 55.000 0.00 0.00 0.00 1.90
89 90 0.107214 CTCCACCACCGCCATAATGT 60.107 55.000 0.00 0.00 0.00 2.71
90 91 1.140052 CTCCACCACCGCCATAATGTA 59.860 52.381 0.00 0.00 0.00 2.29
91 92 1.560146 TCCACCACCGCCATAATGTAA 59.440 47.619 0.00 0.00 0.00 2.41
92 93 1.946768 CCACCACCGCCATAATGTAAG 59.053 52.381 0.00 0.00 0.00 2.34
93 94 2.420827 CCACCACCGCCATAATGTAAGA 60.421 50.000 0.00 0.00 0.00 2.10
94 95 2.872245 CACCACCGCCATAATGTAAGAG 59.128 50.000 0.00 0.00 0.00 2.85
95 96 1.873591 CCACCGCCATAATGTAAGAGC 59.126 52.381 0.00 0.00 0.00 4.09
96 97 2.560504 CACCGCCATAATGTAAGAGCA 58.439 47.619 0.00 0.00 0.00 4.26
97 98 2.942376 CACCGCCATAATGTAAGAGCAA 59.058 45.455 0.00 0.00 0.00 3.91
98 99 3.376859 CACCGCCATAATGTAAGAGCAAA 59.623 43.478 0.00 0.00 0.00 3.68
99 100 3.377172 ACCGCCATAATGTAAGAGCAAAC 59.623 43.478 0.00 0.00 0.00 2.93
100 101 3.627577 CCGCCATAATGTAAGAGCAAACT 59.372 43.478 0.00 0.00 0.00 2.66
101 102 4.814234 CCGCCATAATGTAAGAGCAAACTA 59.186 41.667 0.00 0.00 0.00 2.24
102 103 5.295787 CCGCCATAATGTAAGAGCAAACTAA 59.704 40.000 0.00 0.00 0.00 2.24
103 104 6.017109 CCGCCATAATGTAAGAGCAAACTAAT 60.017 38.462 0.00 0.00 0.00 1.73
104 105 6.852853 CGCCATAATGTAAGAGCAAACTAATG 59.147 38.462 0.00 0.00 0.00 1.90
105 106 7.254761 CGCCATAATGTAAGAGCAAACTAATGA 60.255 37.037 0.00 0.00 0.00 2.57
106 107 8.405531 GCCATAATGTAAGAGCAAACTAATGAA 58.594 33.333 0.00 0.00 0.00 2.57
107 108 9.722056 CCATAATGTAAGAGCAAACTAATGAAC 57.278 33.333 0.00 0.00 0.00 3.18
112 113 9.890629 ATGTAAGAGCAAACTAATGAACTATGA 57.109 29.630 0.00 0.00 0.00 2.15
113 114 9.890629 TGTAAGAGCAAACTAATGAACTATGAT 57.109 29.630 0.00 0.00 0.00 2.45
116 117 9.453572 AAGAGCAAACTAATGAACTATGATGAA 57.546 29.630 0.00 0.00 0.00 2.57
117 118 8.887717 AGAGCAAACTAATGAACTATGATGAAC 58.112 33.333 0.00 0.00 0.00 3.18
118 119 8.798859 AGCAAACTAATGAACTATGATGAACT 57.201 30.769 0.00 0.00 0.00 3.01
119 120 9.890629 AGCAAACTAATGAACTATGATGAACTA 57.109 29.630 0.00 0.00 0.00 2.24
120 121 9.922305 GCAAACTAATGAACTATGATGAACTAC 57.078 33.333 0.00 0.00 0.00 2.73
124 125 8.643324 ACTAATGAACTATGATGAACTACTCCC 58.357 37.037 0.00 0.00 0.00 4.30
125 126 7.682787 AATGAACTATGATGAACTACTCCCT 57.317 36.000 0.00 0.00 0.00 4.20
126 127 6.716934 TGAACTATGATGAACTACTCCCTC 57.283 41.667 0.00 0.00 0.00 4.30
127 128 6.194967 TGAACTATGATGAACTACTCCCTCA 58.805 40.000 0.00 0.00 0.00 3.86
128 129 6.322456 TGAACTATGATGAACTACTCCCTCAG 59.678 42.308 0.00 0.00 0.00 3.35
129 130 5.772004 ACTATGATGAACTACTCCCTCAGT 58.228 41.667 0.00 0.00 39.41 3.41
130 131 6.198639 ACTATGATGAACTACTCCCTCAGTT 58.801 40.000 0.00 0.00 37.69 3.16
132 133 3.769844 TGATGAACTACTCCCTCAGTTCC 59.230 47.826 10.92 0.00 46.59 3.62
133 134 2.168496 TGAACTACTCCCTCAGTTCCG 58.832 52.381 10.92 0.00 46.59 4.30
134 135 2.169330 GAACTACTCCCTCAGTTCCGT 58.831 52.381 3.61 0.00 43.12 4.69
135 136 3.245016 TGAACTACTCCCTCAGTTCCGTA 60.245 47.826 10.92 0.00 46.59 4.02
136 137 3.446442 ACTACTCCCTCAGTTCCGTAA 57.554 47.619 0.00 0.00 36.43 3.18
137 138 3.978610 ACTACTCCCTCAGTTCCGTAAT 58.021 45.455 0.00 0.00 36.43 1.89
138 139 5.121380 ACTACTCCCTCAGTTCCGTAATA 57.879 43.478 0.00 0.00 36.43 0.98
139 140 5.703310 ACTACTCCCTCAGTTCCGTAATAT 58.297 41.667 0.00 0.00 36.43 1.28
140 141 6.845908 ACTACTCCCTCAGTTCCGTAATATA 58.154 40.000 0.00 0.00 36.43 0.86
141 142 6.941436 ACTACTCCCTCAGTTCCGTAATATAG 59.059 42.308 0.00 0.00 36.43 1.31
142 143 5.703310 ACTCCCTCAGTTCCGTAATATAGT 58.297 41.667 0.00 0.00 26.56 2.12
143 144 5.535406 ACTCCCTCAGTTCCGTAATATAGTG 59.465 44.000 0.00 0.00 26.56 2.74
144 145 4.280174 TCCCTCAGTTCCGTAATATAGTGC 59.720 45.833 0.00 0.00 0.00 4.40
145 146 4.557205 CCTCAGTTCCGTAATATAGTGCC 58.443 47.826 0.00 0.00 0.00 5.01
146 147 4.281182 CCTCAGTTCCGTAATATAGTGCCT 59.719 45.833 0.00 0.00 0.00 4.75
147 148 5.475909 CCTCAGTTCCGTAATATAGTGCCTA 59.524 44.000 0.00 0.00 0.00 3.93
148 149 6.153000 CCTCAGTTCCGTAATATAGTGCCTAT 59.847 42.308 1.18 1.18 0.00 2.57
149 150 7.338703 CCTCAGTTCCGTAATATAGTGCCTATA 59.661 40.741 4.91 4.91 34.07 1.31
150 151 8.277490 TCAGTTCCGTAATATAGTGCCTATAG 57.723 38.462 7.64 0.00 33.22 1.31
151 152 8.105197 TCAGTTCCGTAATATAGTGCCTATAGA 58.895 37.037 0.00 0.00 33.22 1.98
152 153 8.904834 CAGTTCCGTAATATAGTGCCTATAGAT 58.095 37.037 0.00 0.00 33.22 1.98
153 154 9.476928 AGTTCCGTAATATAGTGCCTATAGATT 57.523 33.333 0.00 0.00 33.22 2.40
164 165 7.232118 AGTGCCTATAGATTTTTGCAAAAGT 57.768 32.000 22.78 20.72 0.00 2.66
165 166 7.670364 AGTGCCTATAGATTTTTGCAAAAGTT 58.330 30.769 22.78 15.33 0.00 2.66
166 167 8.802267 AGTGCCTATAGATTTTTGCAAAAGTTA 58.198 29.630 22.78 16.46 0.00 2.24
167 168 9.418045 GTGCCTATAGATTTTTGCAAAAGTTAA 57.582 29.630 22.78 13.26 0.00 2.01
168 169 9.988815 TGCCTATAGATTTTTGCAAAAGTTAAA 57.011 25.926 22.78 9.93 0.00 1.52
226 227 8.904099 AGTAGGTACATCTAAATACCAAATGC 57.096 34.615 3.43 0.00 42.95 3.56
227 228 8.491134 AGTAGGTACATCTAAATACCAAATGCA 58.509 33.333 3.43 0.00 42.95 3.96
228 229 7.568199 AGGTACATCTAAATACCAAATGCAC 57.432 36.000 0.00 0.00 42.95 4.57
229 230 7.116075 AGGTACATCTAAATACCAAATGCACA 58.884 34.615 0.00 0.00 42.95 4.57
230 231 7.779798 AGGTACATCTAAATACCAAATGCACAT 59.220 33.333 0.00 0.00 42.95 3.21
231 232 8.076178 GGTACATCTAAATACCAAATGCACATC 58.924 37.037 0.00 0.00 40.61 3.06
232 233 7.643569 ACATCTAAATACCAAATGCACATCA 57.356 32.000 0.00 0.00 0.00 3.07
233 234 8.241497 ACATCTAAATACCAAATGCACATCAT 57.759 30.769 0.00 0.00 36.87 2.45
234 235 8.698210 ACATCTAAATACCAAATGCACATCATT 58.302 29.630 0.00 0.00 46.82 2.57
235 236 8.974408 CATCTAAATACCAAATGCACATCATTG 58.026 33.333 0.00 0.00 44.23 2.82
236 237 8.291191 TCTAAATACCAAATGCACATCATTGA 57.709 30.769 0.00 0.00 44.23 2.57
237 238 8.747471 TCTAAATACCAAATGCACATCATTGAA 58.253 29.630 0.00 0.00 44.23 2.69
238 239 9.537192 CTAAATACCAAATGCACATCATTGAAT 57.463 29.630 0.00 0.00 44.23 2.57
240 241 8.876275 AATACCAAATGCACATCATTGAATAC 57.124 30.769 0.00 0.00 44.23 1.89
241 242 6.283544 ACCAAATGCACATCATTGAATACA 57.716 33.333 0.00 0.00 44.23 2.29
242 243 6.880484 ACCAAATGCACATCATTGAATACAT 58.120 32.000 0.00 0.00 44.23 2.29
243 244 6.982141 ACCAAATGCACATCATTGAATACATC 59.018 34.615 0.00 0.00 44.23 3.06
244 245 6.981559 CCAAATGCACATCATTGAATACATCA 59.018 34.615 0.00 0.00 44.23 3.07
245 246 7.655732 CCAAATGCACATCATTGAATACATCAT 59.344 33.333 0.00 0.00 44.23 2.45
246 247 8.487176 CAAATGCACATCATTGAATACATCATG 58.513 33.333 0.00 0.00 44.23 3.07
247 248 6.945938 TGCACATCATTGAATACATCATGA 57.054 33.333 0.00 0.00 38.03 3.07
248 249 6.966021 TGCACATCATTGAATACATCATGAG 58.034 36.000 0.09 0.00 38.03 2.90
249 250 6.544564 TGCACATCATTGAATACATCATGAGT 59.455 34.615 0.09 2.37 38.03 3.41
250 251 7.067737 TGCACATCATTGAATACATCATGAGTT 59.932 33.333 0.09 0.00 38.03 3.01
251 252 8.562052 GCACATCATTGAATACATCATGAGTTA 58.438 33.333 0.09 0.00 38.03 2.24
292 293 9.251440 ACAGGTTTAGTATTGTAGATGTAGACA 57.749 33.333 0.00 0.00 0.00 3.41
293 294 9.737427 CAGGTTTAGTATTGTAGATGTAGACAG 57.263 37.037 0.00 0.00 0.00 3.51
294 295 9.476928 AGGTTTAGTATTGTAGATGTAGACAGT 57.523 33.333 0.00 0.00 0.00 3.55
322 323 8.810652 TTCTTTATACAATTGTCAAAGTTGGC 57.189 30.769 27.82 0.00 34.48 4.52
323 324 7.946207 TCTTTATACAATTGTCAAAGTTGGCA 58.054 30.769 27.82 15.94 41.72 4.92
324 325 8.584157 TCTTTATACAATTGTCAAAGTTGGCAT 58.416 29.630 27.82 13.54 43.10 4.40
325 326 9.853555 CTTTATACAATTGTCAAAGTTGGCATA 57.146 29.630 24.32 10.22 43.10 3.14
326 327 9.853555 TTTATACAATTGTCAAAGTTGGCATAG 57.146 29.630 15.85 0.00 43.10 2.23
327 328 5.789643 ACAATTGTCAAAGTTGGCATAGT 57.210 34.783 4.92 0.00 43.10 2.12
328 329 6.160576 ACAATTGTCAAAGTTGGCATAGTT 57.839 33.333 4.92 0.00 43.10 2.24
329 330 6.581712 ACAATTGTCAAAGTTGGCATAGTTT 58.418 32.000 4.92 0.00 43.10 2.66
330 331 6.479660 ACAATTGTCAAAGTTGGCATAGTTTG 59.520 34.615 4.92 16.87 43.10 2.93
331 332 5.843673 TTGTCAAAGTTGGCATAGTTTGA 57.156 34.783 19.51 19.51 43.10 2.69
335 336 6.072112 TCAAAGTTGGCATAGTTTGACTTC 57.928 37.500 19.51 0.00 40.64 3.01
336 337 5.592282 TCAAAGTTGGCATAGTTTGACTTCA 59.408 36.000 19.51 6.48 40.64 3.02
337 338 6.096141 TCAAAGTTGGCATAGTTTGACTTCAA 59.904 34.615 19.51 0.00 40.64 2.69
338 339 6.463995 AAGTTGGCATAGTTTGACTTCAAA 57.536 33.333 0.07 0.07 42.90 2.69
339 340 6.463995 AGTTGGCATAGTTTGACTTCAAAA 57.536 33.333 5.98 0.00 46.08 2.44
340 341 6.872920 AGTTGGCATAGTTTGACTTCAAAAA 58.127 32.000 5.98 0.00 46.08 1.94
367 368 3.719268 AGGCACTACATTGTGGAATGA 57.281 42.857 7.20 0.00 41.96 2.57
368 369 4.032960 AGGCACTACATTGTGGAATGAA 57.967 40.909 7.20 0.00 41.96 2.57
369 370 4.012374 AGGCACTACATTGTGGAATGAAG 58.988 43.478 7.20 0.00 41.96 3.02
370 371 3.129287 GGCACTACATTGTGGAATGAAGG 59.871 47.826 7.20 0.00 41.49 3.46
371 372 3.129287 GCACTACATTGTGGAATGAAGGG 59.871 47.826 7.20 0.00 41.49 3.95
372 373 4.588899 CACTACATTGTGGAATGAAGGGA 58.411 43.478 7.20 0.00 41.49 4.20
373 374 4.637534 CACTACATTGTGGAATGAAGGGAG 59.362 45.833 7.20 0.00 41.49 4.30
374 375 3.814504 ACATTGTGGAATGAAGGGAGT 57.185 42.857 0.00 0.00 41.49 3.85
375 376 4.927267 ACATTGTGGAATGAAGGGAGTA 57.073 40.909 0.00 0.00 41.49 2.59
376 377 5.456921 ACATTGTGGAATGAAGGGAGTAT 57.543 39.130 0.00 0.00 41.49 2.12
377 378 6.575244 ACATTGTGGAATGAAGGGAGTATA 57.425 37.500 0.00 0.00 41.49 1.47
378 379 6.969043 ACATTGTGGAATGAAGGGAGTATAA 58.031 36.000 0.00 0.00 41.49 0.98
379 380 7.586349 ACATTGTGGAATGAAGGGAGTATAAT 58.414 34.615 0.00 0.00 41.49 1.28
380 381 8.723365 ACATTGTGGAATGAAGGGAGTATAATA 58.277 33.333 0.00 0.00 41.49 0.98
381 382 9.745018 CATTGTGGAATGAAGGGAGTATAATAT 57.255 33.333 0.00 0.00 41.49 1.28
460 468 7.147811 GGAGTTCCTTTCACATAGACATAGTCT 60.148 40.741 4.93 4.93 45.54 3.24
468 476 4.023107 CACATAGACATAGTCTACCCACCG 60.023 50.000 8.88 0.00 46.06 4.94
507 519 5.299279 ACAATCAACTTGTGAAGGTTGGTAG 59.701 40.000 0.00 0.00 46.37 3.18
570 587 3.152341 GCTGCATCATAATGTTAGGGCT 58.848 45.455 0.00 0.00 35.18 5.19
583 600 9.914834 ATAATGTTAGGGCTAATAACACAGAAA 57.085 29.630 10.95 0.47 43.76 2.52
617 640 3.309296 TGAGGAGAAGACAACTTGGAGT 58.691 45.455 0.00 0.00 36.39 3.85
618 641 4.480115 TGAGGAGAAGACAACTTGGAGTA 58.520 43.478 0.00 0.00 36.39 2.59
655 691 4.766404 AATCGGTGTTCAGATCCAAAAC 57.234 40.909 0.00 0.00 0.00 2.43
702 772 1.876799 TGGGACAACATGTTAACTGCG 59.123 47.619 11.53 0.00 31.92 5.18
813 902 8.970859 ATCAACCCTAAAACTAGATCTCATTG 57.029 34.615 0.00 0.00 0.00 2.82
836 925 2.583143 GACCTCTCTCCTCTAAGCTCC 58.417 57.143 0.00 0.00 0.00 4.70
837 926 2.174854 GACCTCTCTCCTCTAAGCTCCT 59.825 54.545 0.00 0.00 0.00 3.69
838 927 2.174854 ACCTCTCTCCTCTAAGCTCCTC 59.825 54.545 0.00 0.00 0.00 3.71
840 929 1.142060 TCTCTCCTCTAAGCTCCTCCG 59.858 57.143 0.00 0.00 0.00 4.63
841 930 0.920438 TCTCCTCTAAGCTCCTCCGT 59.080 55.000 0.00 0.00 0.00 4.69
842 931 1.134037 TCTCCTCTAAGCTCCTCCGTC 60.134 57.143 0.00 0.00 0.00 4.79
843 932 0.624254 TCCTCTAAGCTCCTCCGTCA 59.376 55.000 0.00 0.00 0.00 4.35
844 933 0.741915 CCTCTAAGCTCCTCCGTCAC 59.258 60.000 0.00 0.00 0.00 3.67
845 934 1.464734 CTCTAAGCTCCTCCGTCACA 58.535 55.000 0.00 0.00 0.00 3.58
846 935 1.819288 CTCTAAGCTCCTCCGTCACAA 59.181 52.381 0.00 0.00 0.00 3.33
847 936 1.544691 TCTAAGCTCCTCCGTCACAAC 59.455 52.381 0.00 0.00 0.00 3.32
848 937 1.272490 CTAAGCTCCTCCGTCACAACA 59.728 52.381 0.00 0.00 0.00 3.33
849 938 0.034059 AAGCTCCTCCGTCACAACAG 59.966 55.000 0.00 0.00 0.00 3.16
850 939 2.029844 GCTCCTCCGTCACAACAGC 61.030 63.158 0.00 0.00 0.00 4.40
851 940 1.668294 CTCCTCCGTCACAACAGCT 59.332 57.895 0.00 0.00 0.00 4.24
852 941 0.888619 CTCCTCCGTCACAACAGCTA 59.111 55.000 0.00 0.00 0.00 3.32
853 942 0.601558 TCCTCCGTCACAACAGCTAC 59.398 55.000 0.00 0.00 0.00 3.58
854 943 0.317160 CCTCCGTCACAACAGCTACA 59.683 55.000 0.00 0.00 0.00 2.74
855 944 1.270094 CCTCCGTCACAACAGCTACAA 60.270 52.381 0.00 0.00 0.00 2.41
861 950 3.060272 CGTCACAACAGCTACAAACAGAG 60.060 47.826 0.00 0.00 0.00 3.35
863 952 4.025647 GTCACAACAGCTACAAACAGAGAC 60.026 45.833 0.00 0.00 0.00 3.36
870 959 2.288273 GCTACAAACAGAGACGACTGGT 60.288 50.000 0.00 0.00 41.59 4.00
871 960 2.225068 ACAAACAGAGACGACTGGTG 57.775 50.000 0.00 3.41 41.59 4.17
872 961 1.754803 ACAAACAGAGACGACTGGTGA 59.245 47.619 15.20 0.00 41.59 4.02
873 962 2.365617 ACAAACAGAGACGACTGGTGAT 59.634 45.455 15.20 0.00 41.59 3.06
874 963 2.989840 CAAACAGAGACGACTGGTGATC 59.010 50.000 0.00 0.00 41.59 2.92
1113 1203 2.364448 GACCTCCCCGCCTTCTCT 60.364 66.667 0.00 0.00 0.00 3.10
1120 1210 1.990060 CCCGCCTTCTCTTCCTCCA 60.990 63.158 0.00 0.00 0.00 3.86
1361 1460 1.491505 GCCATTAGCTCGGTCGCTTC 61.492 60.000 0.00 0.00 41.30 3.86
1409 1509 2.217429 TTCTTTGCTTTCGGTTTGGC 57.783 45.000 0.00 0.00 0.00 4.52
1425 1525 0.472543 TGGCGAGAGATGATGGGGAT 60.473 55.000 0.00 0.00 0.00 3.85
1433 1533 5.301835 AGAGATGATGGGGATTGTTGTAG 57.698 43.478 0.00 0.00 0.00 2.74
1454 1557 2.551459 GACTGTGAATGCTTGAGCTTGT 59.449 45.455 4.44 0.00 42.66 3.16
1492 1595 3.818773 AGATGGCGGAAATTTATAACGGG 59.181 43.478 0.00 0.00 0.00 5.28
1493 1596 1.677052 TGGCGGAAATTTATAACGGGC 59.323 47.619 0.00 0.00 0.00 6.13
1494 1597 1.001048 GGCGGAAATTTATAACGGGCC 60.001 52.381 0.00 0.00 0.00 5.80
1496 1599 2.287368 GCGGAAATTTATAACGGGCCAG 60.287 50.000 4.39 1.85 0.00 4.85
1497 1600 2.292292 CGGAAATTTATAACGGGCCAGG 59.708 50.000 8.08 0.00 0.00 4.45
1498 1601 2.035449 GGAAATTTATAACGGGCCAGGC 59.965 50.000 8.08 1.26 0.00 4.85
1642 1746 1.009829 GAGGACGGCAGCAAATACAG 58.990 55.000 0.00 0.00 0.00 2.74
1645 1749 2.170607 AGGACGGCAGCAAATACAGTAT 59.829 45.455 0.00 0.00 0.00 2.12
1649 1753 3.118775 ACGGCAGCAAATACAGTATGAGA 60.119 43.478 0.00 0.00 39.69 3.27
1652 1756 5.573146 GGCAGCAAATACAGTATGAGAAAC 58.427 41.667 0.00 0.00 39.69 2.78
1653 1757 5.258622 GCAGCAAATACAGTATGAGAAACG 58.741 41.667 0.00 0.00 39.69 3.60
1654 1758 5.258622 CAGCAAATACAGTATGAGAAACGC 58.741 41.667 0.00 0.00 39.69 4.84
1655 1759 4.935205 AGCAAATACAGTATGAGAAACGCA 59.065 37.500 0.00 0.00 39.69 5.24
1656 1760 5.411361 AGCAAATACAGTATGAGAAACGCAA 59.589 36.000 0.00 0.00 39.69 4.85
1657 1761 5.508224 GCAAATACAGTATGAGAAACGCAAC 59.492 40.000 0.00 0.00 39.69 4.17
1658 1762 6.598525 CAAATACAGTATGAGAAACGCAACA 58.401 36.000 0.00 0.00 39.69 3.33
1659 1763 6.795098 AATACAGTATGAGAAACGCAACAA 57.205 33.333 0.00 0.00 39.69 2.83
1660 1764 6.795098 ATACAGTATGAGAAACGCAACAAA 57.205 33.333 0.00 0.00 39.69 2.83
1661 1765 5.095691 ACAGTATGAGAAACGCAACAAAG 57.904 39.130 0.00 0.00 39.69 2.77
1662 1766 4.574828 ACAGTATGAGAAACGCAACAAAGT 59.425 37.500 0.00 0.00 39.69 2.66
1663 1767 5.065988 ACAGTATGAGAAACGCAACAAAGTT 59.934 36.000 0.00 0.00 39.69 2.66
1664 1768 5.971202 CAGTATGAGAAACGCAACAAAGTTT 59.029 36.000 0.00 0.00 40.10 2.66
1665 1769 5.971202 AGTATGAGAAACGCAACAAAGTTTG 59.029 36.000 14.13 14.13 40.24 2.93
1666 1770 4.427096 TGAGAAACGCAACAAAGTTTGA 57.573 36.364 22.23 0.00 40.24 2.69
1667 1771 4.799678 TGAGAAACGCAACAAAGTTTGAA 58.200 34.783 22.23 0.00 40.24 2.69
1668 1772 4.619336 TGAGAAACGCAACAAAGTTTGAAC 59.381 37.500 22.23 9.42 40.24 3.18
1669 1773 4.551388 AGAAACGCAACAAAGTTTGAACA 58.449 34.783 22.23 0.00 40.24 3.18
1670 1774 4.985409 AGAAACGCAACAAAGTTTGAACAA 59.015 33.333 22.23 0.00 40.24 2.83
1671 1775 4.639189 AACGCAACAAAGTTTGAACAAC 57.361 36.364 22.23 5.84 0.00 3.32
1672 1776 3.643763 ACGCAACAAAGTTTGAACAACA 58.356 36.364 22.23 0.00 0.00 3.33
1673 1777 3.672867 ACGCAACAAAGTTTGAACAACAG 59.327 39.130 22.23 8.60 0.00 3.16
1674 1778 3.917380 CGCAACAAAGTTTGAACAACAGA 59.083 39.130 22.23 0.00 0.00 3.41
1675 1779 4.562394 CGCAACAAAGTTTGAACAACAGAT 59.438 37.500 22.23 0.00 0.00 2.90
1676 1780 5.741510 CGCAACAAAGTTTGAACAACAGATA 59.258 36.000 22.23 0.00 0.00 1.98
1677 1781 6.075415 CGCAACAAAGTTTGAACAACAGATAG 60.075 38.462 22.23 0.00 0.00 2.08
1678 1782 6.972328 GCAACAAAGTTTGAACAACAGATAGA 59.028 34.615 22.23 0.00 0.00 1.98
1679 1783 7.166473 GCAACAAAGTTTGAACAACAGATAGAG 59.834 37.037 22.23 0.00 0.00 2.43
1680 1784 7.865706 ACAAAGTTTGAACAACAGATAGAGT 57.134 32.000 22.23 0.00 0.00 3.24
1681 1785 8.958119 ACAAAGTTTGAACAACAGATAGAGTA 57.042 30.769 22.23 0.00 0.00 2.59
1682 1786 9.391006 ACAAAGTTTGAACAACAGATAGAGTAA 57.609 29.630 22.23 0.00 0.00 2.24
1690 1794 8.817100 TGAACAACAGATAGAGTAAATATTGCG 58.183 33.333 0.00 0.00 0.00 4.85
1691 1795 8.718102 AACAACAGATAGAGTAAATATTGCGT 57.282 30.769 0.00 0.00 0.00 5.24
1692 1796 9.811995 AACAACAGATAGAGTAAATATTGCGTA 57.188 29.630 0.00 0.00 0.00 4.42
1693 1797 9.982651 ACAACAGATAGAGTAAATATTGCGTAT 57.017 29.630 0.00 0.00 0.00 3.06
1699 1803 9.453325 GATAGAGTAAATATTGCGTATCTAGCC 57.547 37.037 0.00 0.00 0.00 3.93
1700 1804 7.228314 AGAGTAAATATTGCGTATCTAGCCA 57.772 36.000 0.00 0.00 0.00 4.75
1701 1805 7.091443 AGAGTAAATATTGCGTATCTAGCCAC 58.909 38.462 0.00 0.00 0.00 5.01
1702 1806 5.862323 AGTAAATATTGCGTATCTAGCCACG 59.138 40.000 10.52 10.52 41.04 4.94
1703 1807 3.936372 ATATTGCGTATCTAGCCACGT 57.064 42.857 14.71 0.00 40.25 4.49
1704 1808 1.852942 ATTGCGTATCTAGCCACGTG 58.147 50.000 9.08 9.08 40.25 4.49
1705 1809 0.804544 TTGCGTATCTAGCCACGTGC 60.805 55.000 10.91 5.91 40.25 5.34
1706 1810 1.226859 GCGTATCTAGCCACGTGCA 60.227 57.895 10.91 0.00 44.83 4.57
1707 1811 1.480219 GCGTATCTAGCCACGTGCAC 61.480 60.000 10.91 6.82 44.83 4.57
1708 1812 0.870307 CGTATCTAGCCACGTGCACC 60.870 60.000 10.91 0.08 44.83 5.01
1709 1813 0.870307 GTATCTAGCCACGTGCACCG 60.870 60.000 10.91 9.19 44.83 4.94
1710 1814 2.622903 TATCTAGCCACGTGCACCGC 62.623 60.000 10.91 10.64 44.83 5.68
1712 1816 4.610714 TAGCCACGTGCACCGCAA 62.611 61.111 10.91 0.00 41.47 4.85
1713 1817 3.892740 TAGCCACGTGCACCGCAAT 62.893 57.895 10.91 0.00 41.47 3.56
1727 1831 0.390078 CGCAATGCAAAATGGCTCCA 60.390 50.000 5.91 0.00 34.04 3.86
1728 1832 1.081094 GCAATGCAAAATGGCTCCAC 58.919 50.000 0.00 0.00 34.04 4.02
1729 1833 1.729284 CAATGCAAAATGGCTCCACC 58.271 50.000 0.00 0.00 39.84 4.61
1730 1834 1.276989 CAATGCAAAATGGCTCCACCT 59.723 47.619 0.00 0.00 40.22 4.00
1776 1880 3.636231 CACCAACCAGCCCCTCGA 61.636 66.667 0.00 0.00 0.00 4.04
1850 1954 2.917227 TCGTCCACAGCCAGCTCA 60.917 61.111 0.00 0.00 0.00 4.26
1971 2075 0.179009 TTCAAGTGAGGCTGCTGCTT 60.179 50.000 15.64 7.86 39.59 3.91
1975 2079 3.251509 TGAGGCTGCTGCTTGGGA 61.252 61.111 15.64 0.00 39.59 4.37
2007 2112 4.421479 CGAGTCGCTTGACCCGCT 62.421 66.667 0.00 0.00 43.97 5.52
2026 2131 4.427661 GTCCGCGCTGCTCTCTGT 62.428 66.667 5.56 0.00 0.00 3.41
2028 2133 4.426112 CCGCGCTGCTCTCTGTGA 62.426 66.667 5.56 0.00 0.00 3.58
2029 2134 3.177920 CGCGCTGCTCTCTGTGAC 61.178 66.667 5.56 0.00 0.00 3.67
2030 2135 2.048784 GCGCTGCTCTCTGTGACA 60.049 61.111 0.00 0.00 0.00 3.58
2036 2141 1.367840 GCTCTCTGTGACAACCGGT 59.632 57.895 0.00 0.00 0.00 5.28
2043 2148 4.947147 TGACAACCGGTGCCTGCC 62.947 66.667 8.52 0.00 0.00 4.85
2131 2236 1.073763 CCATCCTCCGCATTTATCCCA 59.926 52.381 0.00 0.00 0.00 4.37
2132 2237 2.154462 CATCCTCCGCATTTATCCCAC 58.846 52.381 0.00 0.00 0.00 4.61
2137 2242 2.551912 CGCATTTATCCCACGGCCC 61.552 63.158 0.00 0.00 0.00 5.80
2138 2243 1.152756 GCATTTATCCCACGGCCCT 60.153 57.895 0.00 0.00 0.00 5.19
2140 2245 0.884704 CATTTATCCCACGGCCCTCG 60.885 60.000 0.00 0.00 45.88 4.63
2149 2254 3.499737 CGGCCCTCGTGCATTCAC 61.500 66.667 0.00 0.00 39.78 3.18
2150 2255 2.045926 GGCCCTCGTGCATTCACT 60.046 61.111 0.00 0.00 40.99 3.41
2151 2256 1.675641 GGCCCTCGTGCATTCACTT 60.676 57.895 0.00 0.00 40.99 3.16
2153 2258 0.955428 GCCCTCGTGCATTCACTTCA 60.955 55.000 0.00 0.00 40.99 3.02
2155 2260 1.511850 CCTCGTGCATTCACTTCACA 58.488 50.000 0.00 0.00 40.99 3.58
2231 2336 1.134694 GAATGGCAAGTCGTTCGCC 59.865 57.895 0.00 0.00 46.43 5.54
2235 2340 3.039588 GCAAGTCGTTCGCCCGAA 61.040 61.111 0.00 0.00 38.80 4.30
2320 2426 2.202518 CGCAGCAATTGAAGGCCG 60.203 61.111 10.34 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.866156 CCACCATGATACGCAACTACAG 59.134 50.000 0.00 0.00 0.00 2.74
20 21 2.419436 CCCACCATGATACGCAACTACA 60.419 50.000 0.00 0.00 0.00 2.74
21 22 2.210116 CCCACCATGATACGCAACTAC 58.790 52.381 0.00 0.00 0.00 2.73
22 23 1.834896 ACCCACCATGATACGCAACTA 59.165 47.619 0.00 0.00 0.00 2.24
23 24 0.618458 ACCCACCATGATACGCAACT 59.382 50.000 0.00 0.00 0.00 3.16
65 66 0.324923 ATGGCGGTGGTGGAGTACTA 60.325 55.000 0.00 0.00 0.00 1.82
66 67 0.324923 TATGGCGGTGGTGGAGTACT 60.325 55.000 0.00 0.00 0.00 2.73
67 68 0.538118 TTATGGCGGTGGTGGAGTAC 59.462 55.000 0.00 0.00 0.00 2.73
68 69 1.140052 CATTATGGCGGTGGTGGAGTA 59.860 52.381 0.00 0.00 0.00 2.59
69 70 0.107214 CATTATGGCGGTGGTGGAGT 60.107 55.000 0.00 0.00 0.00 3.85
70 71 0.107214 ACATTATGGCGGTGGTGGAG 60.107 55.000 0.00 0.00 0.00 3.86
72 73 1.946768 CTTACATTATGGCGGTGGTGG 59.053 52.381 0.00 0.00 0.00 4.61
73 74 2.872245 CTCTTACATTATGGCGGTGGTG 59.128 50.000 0.00 0.00 0.00 4.17
74 75 2.745152 GCTCTTACATTATGGCGGTGGT 60.745 50.000 0.00 0.00 0.00 4.16
75 76 1.873591 GCTCTTACATTATGGCGGTGG 59.126 52.381 0.00 0.00 0.00 4.61
76 77 2.560504 TGCTCTTACATTATGGCGGTG 58.439 47.619 0.00 0.00 0.00 4.94
77 78 3.275617 TTGCTCTTACATTATGGCGGT 57.724 42.857 0.00 0.00 0.00 5.68
78 79 3.627577 AGTTTGCTCTTACATTATGGCGG 59.372 43.478 0.00 0.00 0.00 6.13
79 80 4.882671 AGTTTGCTCTTACATTATGGCG 57.117 40.909 0.00 0.00 0.00 5.69
80 81 7.930217 TCATTAGTTTGCTCTTACATTATGGC 58.070 34.615 0.00 0.00 0.00 4.40
81 82 9.722056 GTTCATTAGTTTGCTCTTACATTATGG 57.278 33.333 0.00 0.00 0.00 2.74
86 87 9.890629 TCATAGTTCATTAGTTTGCTCTTACAT 57.109 29.630 0.00 0.00 0.00 2.29
87 88 9.890629 ATCATAGTTCATTAGTTTGCTCTTACA 57.109 29.630 0.00 0.00 0.00 2.41
90 91 9.453572 TTCATCATAGTTCATTAGTTTGCTCTT 57.546 29.630 0.00 0.00 0.00 2.85
91 92 8.887717 GTTCATCATAGTTCATTAGTTTGCTCT 58.112 33.333 0.00 0.00 0.00 4.09
92 93 8.887717 AGTTCATCATAGTTCATTAGTTTGCTC 58.112 33.333 0.00 0.00 0.00 4.26
93 94 8.798859 AGTTCATCATAGTTCATTAGTTTGCT 57.201 30.769 0.00 0.00 0.00 3.91
94 95 9.922305 GTAGTTCATCATAGTTCATTAGTTTGC 57.078 33.333 0.00 0.00 0.00 3.68
98 99 8.643324 GGGAGTAGTTCATCATAGTTCATTAGT 58.357 37.037 0.00 0.00 0.00 2.24
99 100 8.865090 AGGGAGTAGTTCATCATAGTTCATTAG 58.135 37.037 0.00 0.00 0.00 1.73
100 101 8.783660 AGGGAGTAGTTCATCATAGTTCATTA 57.216 34.615 0.00 0.00 0.00 1.90
101 102 7.345653 TGAGGGAGTAGTTCATCATAGTTCATT 59.654 37.037 0.00 0.00 0.00 2.57
102 103 6.841229 TGAGGGAGTAGTTCATCATAGTTCAT 59.159 38.462 0.00 0.00 0.00 2.57
103 104 6.194967 TGAGGGAGTAGTTCATCATAGTTCA 58.805 40.000 0.00 0.00 0.00 3.18
104 105 6.322712 ACTGAGGGAGTAGTTCATCATAGTTC 59.677 42.308 0.00 0.00 30.86 3.01
105 106 6.198639 ACTGAGGGAGTAGTTCATCATAGTT 58.801 40.000 0.00 0.00 30.86 2.24
106 107 5.772004 ACTGAGGGAGTAGTTCATCATAGT 58.228 41.667 0.00 0.00 30.86 2.12
107 108 6.723298 AACTGAGGGAGTAGTTCATCATAG 57.277 41.667 0.00 0.00 31.88 2.23
115 116 2.305858 ACGGAACTGAGGGAGTAGTT 57.694 50.000 0.00 0.00 39.67 2.24
116 117 3.446442 TTACGGAACTGAGGGAGTAGT 57.554 47.619 0.00 0.00 33.09 2.73
117 118 6.941436 ACTATATTACGGAACTGAGGGAGTAG 59.059 42.308 0.00 0.00 33.09 2.57
118 119 6.713903 CACTATATTACGGAACTGAGGGAGTA 59.286 42.308 0.00 0.00 33.09 2.59
119 120 5.535406 CACTATATTACGGAACTGAGGGAGT 59.465 44.000 0.00 0.00 35.94 3.85
120 121 5.565045 GCACTATATTACGGAACTGAGGGAG 60.565 48.000 0.00 0.00 0.00 4.30
121 122 4.280174 GCACTATATTACGGAACTGAGGGA 59.720 45.833 0.00 0.00 0.00 4.20
122 123 4.557205 GCACTATATTACGGAACTGAGGG 58.443 47.826 0.00 0.00 0.00 4.30
123 124 4.281182 AGGCACTATATTACGGAACTGAGG 59.719 45.833 0.00 0.00 36.02 3.86
124 125 5.455056 AGGCACTATATTACGGAACTGAG 57.545 43.478 0.00 0.00 36.02 3.35
140 141 7.232118 ACTTTTGCAAAAATCTATAGGCACT 57.768 32.000 23.92 0.00 46.37 4.40
141 142 7.889589 AACTTTTGCAAAAATCTATAGGCAC 57.110 32.000 23.92 0.00 0.00 5.01
142 143 9.988815 TTTAACTTTTGCAAAAATCTATAGGCA 57.011 25.926 23.92 0.00 0.00 4.75
200 201 9.338622 GCATTTGGTATTTAGATGTACCTACTT 57.661 33.333 3.54 0.00 40.78 2.24
201 202 8.491134 TGCATTTGGTATTTAGATGTACCTACT 58.509 33.333 3.54 0.00 40.78 2.57
202 203 8.557029 GTGCATTTGGTATTTAGATGTACCTAC 58.443 37.037 0.00 0.00 40.78 3.18
203 204 8.268605 TGTGCATTTGGTATTTAGATGTACCTA 58.731 33.333 0.00 0.00 40.78 3.08
204 205 7.116075 TGTGCATTTGGTATTTAGATGTACCT 58.884 34.615 0.00 0.00 40.78 3.08
205 206 7.328277 TGTGCATTTGGTATTTAGATGTACC 57.672 36.000 0.00 0.00 40.60 3.34
206 207 8.620416 TGATGTGCATTTGGTATTTAGATGTAC 58.380 33.333 0.00 0.00 35.02 2.90
207 208 8.744568 TGATGTGCATTTGGTATTTAGATGTA 57.255 30.769 0.00 0.00 0.00 2.29
208 209 7.643569 TGATGTGCATTTGGTATTTAGATGT 57.356 32.000 0.00 0.00 0.00 3.06
209 210 8.974408 CAATGATGTGCATTTGGTATTTAGATG 58.026 33.333 0.00 0.00 44.68 2.90
210 211 8.916062 TCAATGATGTGCATTTGGTATTTAGAT 58.084 29.630 0.00 0.00 44.68 1.98
211 212 8.291191 TCAATGATGTGCATTTGGTATTTAGA 57.709 30.769 0.00 0.00 44.68 2.10
212 213 8.929827 TTCAATGATGTGCATTTGGTATTTAG 57.070 30.769 0.00 0.00 44.68 1.85
214 215 9.316730 GTATTCAATGATGTGCATTTGGTATTT 57.683 29.630 0.00 0.00 44.68 1.40
215 216 8.476447 TGTATTCAATGATGTGCATTTGGTATT 58.524 29.630 0.00 0.00 44.68 1.89
216 217 8.009622 TGTATTCAATGATGTGCATTTGGTAT 57.990 30.769 0.00 0.00 44.68 2.73
217 218 7.401955 TGTATTCAATGATGTGCATTTGGTA 57.598 32.000 0.00 0.00 44.68 3.25
218 219 6.283544 TGTATTCAATGATGTGCATTTGGT 57.716 33.333 0.00 0.00 44.68 3.67
219 220 6.981559 TGATGTATTCAATGATGTGCATTTGG 59.018 34.615 0.00 0.00 44.68 3.28
220 221 7.995463 TGATGTATTCAATGATGTGCATTTG 57.005 32.000 0.00 0.00 44.68 2.32
221 222 8.417884 TCATGATGTATTCAATGATGTGCATTT 58.582 29.630 0.00 0.00 44.68 2.32
223 224 7.230712 ACTCATGATGTATTCAATGATGTGCAT 59.769 33.333 0.00 0.87 38.03 3.96
224 225 6.544564 ACTCATGATGTATTCAATGATGTGCA 59.455 34.615 0.00 0.00 38.03 4.57
225 226 6.967135 ACTCATGATGTATTCAATGATGTGC 58.033 36.000 0.00 0.00 38.03 4.57
266 267 9.251440 TGTCTACATCTACAATACTAAACCTGT 57.749 33.333 0.00 0.00 0.00 4.00
267 268 9.737427 CTGTCTACATCTACAATACTAAACCTG 57.263 37.037 0.00 0.00 0.00 4.00
268 269 9.476928 ACTGTCTACATCTACAATACTAAACCT 57.523 33.333 0.00 0.00 0.00 3.50
296 297 9.255304 GCCAACTTTGACAATTGTATAAAGAAA 57.745 29.630 32.91 17.55 36.56 2.52
297 298 8.417106 TGCCAACTTTGACAATTGTATAAAGAA 58.583 29.630 32.91 19.51 36.56 2.52
298 299 7.946207 TGCCAACTTTGACAATTGTATAAAGA 58.054 30.769 32.91 19.19 36.56 2.52
299 300 8.761575 ATGCCAACTTTGACAATTGTATAAAG 57.238 30.769 28.64 28.64 37.84 1.85
300 301 9.853555 CTATGCCAACTTTGACAATTGTATAAA 57.146 29.630 11.95 14.31 0.00 1.40
301 302 9.019656 ACTATGCCAACTTTGACAATTGTATAA 57.980 29.630 11.95 7.34 0.00 0.98
302 303 8.574251 ACTATGCCAACTTTGACAATTGTATA 57.426 30.769 11.95 0.57 0.00 1.47
303 304 7.466746 ACTATGCCAACTTTGACAATTGTAT 57.533 32.000 11.95 0.00 0.00 2.29
304 305 6.892658 ACTATGCCAACTTTGACAATTGTA 57.107 33.333 11.95 0.00 0.00 2.41
305 306 5.789643 ACTATGCCAACTTTGACAATTGT 57.210 34.783 11.78 11.78 0.00 2.71
306 307 6.700960 TCAAACTATGCCAACTTTGACAATTG 59.299 34.615 3.24 3.24 29.66 2.32
307 308 6.701400 GTCAAACTATGCCAACTTTGACAATT 59.299 34.615 14.32 0.00 46.21 2.32
308 309 6.215845 GTCAAACTATGCCAACTTTGACAAT 58.784 36.000 14.32 0.00 46.21 2.71
309 310 5.587289 GTCAAACTATGCCAACTTTGACAA 58.413 37.500 14.32 0.00 46.21 3.18
310 311 5.181690 GTCAAACTATGCCAACTTTGACA 57.818 39.130 14.32 0.00 46.21 3.58
311 312 5.438761 AGTCAAACTATGCCAACTTTGAC 57.561 39.130 12.19 12.19 46.84 3.18
312 313 5.592282 TGAAGTCAAACTATGCCAACTTTGA 59.408 36.000 0.00 0.00 31.68 2.69
313 314 5.830912 TGAAGTCAAACTATGCCAACTTTG 58.169 37.500 0.00 0.00 0.00 2.77
314 315 6.463995 TTGAAGTCAAACTATGCCAACTTT 57.536 33.333 0.00 0.00 32.11 2.66
315 316 6.463995 TTTGAAGTCAAACTATGCCAACTT 57.536 33.333 2.32 0.00 40.55 2.66
316 317 6.463995 TTTTGAAGTCAAACTATGCCAACT 57.536 33.333 5.98 0.00 44.56 3.16
337 338 8.052748 TCCACAATGTAGTGCCTATAGATTTTT 58.947 33.333 0.00 0.00 38.18 1.94
338 339 7.573710 TCCACAATGTAGTGCCTATAGATTTT 58.426 34.615 0.00 0.00 38.18 1.82
339 340 7.136822 TCCACAATGTAGTGCCTATAGATTT 57.863 36.000 0.00 0.00 38.18 2.17
340 341 6.747414 TCCACAATGTAGTGCCTATAGATT 57.253 37.500 0.00 0.00 38.18 2.40
341 342 6.747414 TTCCACAATGTAGTGCCTATAGAT 57.253 37.500 0.00 0.00 38.18 1.98
342 343 6.326323 TCATTCCACAATGTAGTGCCTATAGA 59.674 38.462 0.00 0.00 40.47 1.98
343 344 6.524734 TCATTCCACAATGTAGTGCCTATAG 58.475 40.000 0.00 0.00 40.47 1.31
344 345 6.493189 TCATTCCACAATGTAGTGCCTATA 57.507 37.500 0.00 0.00 40.47 1.31
345 346 5.372343 TCATTCCACAATGTAGTGCCTAT 57.628 39.130 0.00 0.00 40.47 2.57
346 347 4.835284 TCATTCCACAATGTAGTGCCTA 57.165 40.909 0.00 0.00 40.47 3.93
347 348 3.719268 TCATTCCACAATGTAGTGCCT 57.281 42.857 0.00 0.00 40.47 4.75
348 349 3.129287 CCTTCATTCCACAATGTAGTGCC 59.871 47.826 0.00 0.00 40.47 5.01
349 350 3.129287 CCCTTCATTCCACAATGTAGTGC 59.871 47.826 0.00 0.00 40.47 4.40
350 351 4.588899 TCCCTTCATTCCACAATGTAGTG 58.411 43.478 0.00 0.00 40.47 2.74
351 352 4.289672 ACTCCCTTCATTCCACAATGTAGT 59.710 41.667 0.00 0.00 40.47 2.73
352 353 4.848357 ACTCCCTTCATTCCACAATGTAG 58.152 43.478 0.00 0.00 40.47 2.74
353 354 4.927267 ACTCCCTTCATTCCACAATGTA 57.073 40.909 0.00 0.00 40.47 2.29
354 355 3.814504 ACTCCCTTCATTCCACAATGT 57.185 42.857 0.00 0.00 40.47 2.71
355 356 9.745018 ATATTATACTCCCTTCATTCCACAATG 57.255 33.333 0.00 0.00 40.91 2.82
408 409 8.975410 TCGCTTGCGTTACATTATATTATACT 57.025 30.769 14.70 0.00 0.00 2.12
409 410 8.318876 CCTCGCTTGCGTTACATTATATTATAC 58.681 37.037 14.70 0.00 0.00 1.47
460 468 2.113562 GTTGGGTTGCGGTGGGTA 59.886 61.111 0.00 0.00 0.00 3.69
468 476 0.387565 ATTGTGTTCGGTTGGGTTGC 59.612 50.000 0.00 0.00 0.00 4.17
527 539 8.170553 GCAGCCATAAATCAAAAACATTGTAAG 58.829 33.333 0.00 0.00 0.00 2.34
528 540 7.658982 TGCAGCCATAAATCAAAAACATTGTAA 59.341 29.630 0.00 0.00 0.00 2.41
529 541 7.157347 TGCAGCCATAAATCAAAAACATTGTA 58.843 30.769 0.00 0.00 0.00 2.41
530 542 5.996513 TGCAGCCATAAATCAAAAACATTGT 59.003 32.000 0.00 0.00 0.00 2.71
548 565 2.229784 GCCCTAACATTATGATGCAGCC 59.770 50.000 0.00 0.00 36.72 4.85
570 587 8.615878 ACAACTAGCATGTTTCTGTGTTATTA 57.384 30.769 0.00 0.00 0.00 0.98
583 600 4.284490 TCTTCTCCTCAACAACTAGCATGT 59.716 41.667 0.00 0.00 0.00 3.21
611 634 9.784531 GATTAATTCTGGATCTGAATACTCCAA 57.215 33.333 12.45 5.72 38.55 3.53
617 640 7.735917 ACACCGATTAATTCTGGATCTGAATA 58.264 34.615 12.45 2.58 33.02 1.75
618 641 6.595682 ACACCGATTAATTCTGGATCTGAAT 58.404 36.000 8.74 8.11 34.38 2.57
655 691 2.932614 GTGATACTTGTGCTGGTAGCTG 59.067 50.000 0.00 0.00 42.97 4.24
689 759 1.742411 CGGGATCCGCAGTTAACATGT 60.742 52.381 8.61 0.00 41.17 3.21
702 772 4.359706 GCATTTTGTAACATTCGGGATCC 58.640 43.478 1.92 1.92 0.00 3.36
709 779 3.859411 TCCCCGCATTTTGTAACATTC 57.141 42.857 0.00 0.00 0.00 2.67
718 788 3.364549 TCAATCTGATTCCCCGCATTTT 58.635 40.909 0.00 0.00 0.00 1.82
813 902 1.314730 CTTAGAGGAGAGAGGTCGGC 58.685 60.000 0.00 0.00 0.00 5.54
836 925 2.148916 TTGTAGCTGTTGTGACGGAG 57.851 50.000 0.00 0.00 33.82 4.63
837 926 2.206750 GTTTGTAGCTGTTGTGACGGA 58.793 47.619 0.00 0.00 33.82 4.69
838 927 1.937223 TGTTTGTAGCTGTTGTGACGG 59.063 47.619 0.00 0.00 35.15 4.79
840 929 4.025647 GTCTCTGTTTGTAGCTGTTGTGAC 60.026 45.833 0.00 0.00 0.00 3.67
841 930 4.119862 GTCTCTGTTTGTAGCTGTTGTGA 58.880 43.478 0.00 0.00 0.00 3.58
842 931 3.060272 CGTCTCTGTTTGTAGCTGTTGTG 60.060 47.826 0.00 0.00 0.00 3.33
843 932 3.123804 CGTCTCTGTTTGTAGCTGTTGT 58.876 45.455 0.00 0.00 0.00 3.32
844 933 3.182572 GTCGTCTCTGTTTGTAGCTGTTG 59.817 47.826 0.00 0.00 0.00 3.33
845 934 3.068307 AGTCGTCTCTGTTTGTAGCTGTT 59.932 43.478 0.00 0.00 0.00 3.16
846 935 2.623889 AGTCGTCTCTGTTTGTAGCTGT 59.376 45.455 0.00 0.00 0.00 4.40
847 936 2.983136 CAGTCGTCTCTGTTTGTAGCTG 59.017 50.000 0.00 0.00 0.00 4.24
848 937 2.029828 CCAGTCGTCTCTGTTTGTAGCT 60.030 50.000 0.00 0.00 34.02 3.32
849 938 2.288273 ACCAGTCGTCTCTGTTTGTAGC 60.288 50.000 0.00 0.00 34.02 3.58
850 939 3.004419 TCACCAGTCGTCTCTGTTTGTAG 59.996 47.826 0.00 0.00 34.02 2.74
851 940 2.953648 TCACCAGTCGTCTCTGTTTGTA 59.046 45.455 0.00 0.00 34.02 2.41
852 941 1.754803 TCACCAGTCGTCTCTGTTTGT 59.245 47.619 0.00 0.00 34.02 2.83
853 942 2.509052 TCACCAGTCGTCTCTGTTTG 57.491 50.000 0.00 0.00 34.02 2.93
854 943 2.028930 GGATCACCAGTCGTCTCTGTTT 60.029 50.000 0.00 0.00 35.97 2.83
855 944 1.546476 GGATCACCAGTCGTCTCTGTT 59.454 52.381 0.00 0.00 35.97 3.16
861 950 3.708210 TGGGGATCACCAGTCGTC 58.292 61.111 14.36 0.00 42.91 4.20
870 959 2.177016 TCCTCTTACGATCTGGGGATCA 59.823 50.000 0.00 0.00 46.30 2.92
871 960 2.877866 TCCTCTTACGATCTGGGGATC 58.122 52.381 0.00 0.00 43.48 3.36
872 961 3.330126 TTCCTCTTACGATCTGGGGAT 57.670 47.619 0.00 0.00 34.45 3.85
873 962 2.764572 GTTTCCTCTTACGATCTGGGGA 59.235 50.000 0.00 0.00 0.00 4.81
874 963 2.500098 TGTTTCCTCTTACGATCTGGGG 59.500 50.000 0.00 0.00 0.00 4.96
884 974 5.565439 GCGTGTACCTAGTTGTTTCCTCTTA 60.565 44.000 0.00 0.00 0.00 2.10
891 981 2.129607 CGTGCGTGTACCTAGTTGTTT 58.870 47.619 0.00 0.00 0.00 2.83
1113 1203 3.948719 GTGGTGGCGGTGGAGGAA 61.949 66.667 0.00 0.00 0.00 3.36
1158 1257 4.910585 GGGCGGGCGGACTACATG 62.911 72.222 0.00 0.00 0.00 3.21
1361 1460 4.555348 AGTAGAATCTTACGAGCGAAGG 57.445 45.455 0.00 0.00 0.00 3.46
1409 1509 3.136763 CAACAATCCCCATCATCTCTCG 58.863 50.000 0.00 0.00 0.00 4.04
1425 1525 5.122519 TCAAGCATTCACAGTCTACAACAA 58.877 37.500 0.00 0.00 0.00 2.83
1433 1533 2.551459 ACAAGCTCAAGCATTCACAGTC 59.449 45.455 4.59 0.00 45.16 3.51
1454 1557 2.317973 CATCTCCAGCTCTCCATCTCA 58.682 52.381 0.00 0.00 0.00 3.27
1497 1600 4.120755 CTCTTCCCCTGGCCTGGC 62.121 72.222 22.93 11.05 0.00 4.85
1498 1601 3.415087 CCTCTTCCCCTGGCCTGG 61.415 72.222 21.51 21.51 0.00 4.45
1499 1602 1.695597 ATCCTCTTCCCCTGGCCTG 60.696 63.158 3.32 2.54 0.00 4.85
1500 1603 1.695597 CATCCTCTTCCCCTGGCCT 60.696 63.158 3.32 0.00 0.00 5.19
1501 1604 1.281925 TTCATCCTCTTCCCCTGGCC 61.282 60.000 0.00 0.00 0.00 5.36
1502 1605 0.182299 CTTCATCCTCTTCCCCTGGC 59.818 60.000 0.00 0.00 0.00 4.85
1642 1746 5.968848 TCAAACTTTGTTGCGTTTCTCATAC 59.031 36.000 1.44 0.00 31.46 2.39
1645 1749 4.427096 TCAAACTTTGTTGCGTTTCTCA 57.573 36.364 1.44 0.00 31.46 3.27
1649 1753 4.508124 TGTTGTTCAAACTTTGTTGCGTTT 59.492 33.333 1.44 0.00 33.92 3.60
1652 1756 3.917380 TCTGTTGTTCAAACTTTGTTGCG 59.083 39.130 1.44 0.00 0.00 4.85
1653 1757 6.972328 TCTATCTGTTGTTCAAACTTTGTTGC 59.028 34.615 1.44 0.00 0.00 4.17
1654 1758 8.184192 ACTCTATCTGTTGTTCAAACTTTGTTG 58.816 33.333 1.44 0.00 0.00 3.33
1655 1759 8.281212 ACTCTATCTGTTGTTCAAACTTTGTT 57.719 30.769 1.44 0.00 0.00 2.83
1656 1760 7.865706 ACTCTATCTGTTGTTCAAACTTTGT 57.134 32.000 1.44 0.00 0.00 2.83
1664 1768 8.817100 CGCAATATTTACTCTATCTGTTGTTCA 58.183 33.333 0.00 0.00 0.00 3.18
1665 1769 8.818057 ACGCAATATTTACTCTATCTGTTGTTC 58.182 33.333 0.00 0.00 0.00 3.18
1666 1770 8.718102 ACGCAATATTTACTCTATCTGTTGTT 57.282 30.769 0.00 0.00 0.00 2.83
1667 1771 9.982651 ATACGCAATATTTACTCTATCTGTTGT 57.017 29.630 0.00 0.00 0.00 3.32
1673 1777 9.453325 GGCTAGATACGCAATATTTACTCTATC 57.547 37.037 0.00 0.00 0.00 2.08
1674 1778 8.967918 TGGCTAGATACGCAATATTTACTCTAT 58.032 33.333 0.00 0.00 0.00 1.98
1675 1779 8.242053 GTGGCTAGATACGCAATATTTACTCTA 58.758 37.037 0.00 0.00 0.00 2.43
1676 1780 7.091443 GTGGCTAGATACGCAATATTTACTCT 58.909 38.462 0.00 0.00 0.00 3.24
1677 1781 6.033619 CGTGGCTAGATACGCAATATTTACTC 59.966 42.308 6.32 0.00 33.25 2.59
1678 1782 5.862323 CGTGGCTAGATACGCAATATTTACT 59.138 40.000 6.32 0.00 33.25 2.24
1679 1783 5.632347 ACGTGGCTAGATACGCAATATTTAC 59.368 40.000 16.10 0.00 43.63 2.01
1680 1784 5.631929 CACGTGGCTAGATACGCAATATTTA 59.368 40.000 7.95 0.00 43.63 1.40
1681 1785 4.447724 CACGTGGCTAGATACGCAATATTT 59.552 41.667 7.95 0.00 43.63 1.40
1682 1786 3.987868 CACGTGGCTAGATACGCAATATT 59.012 43.478 7.95 0.00 43.63 1.28
1683 1787 3.575630 CACGTGGCTAGATACGCAATAT 58.424 45.455 7.95 0.00 43.63 1.28
1684 1788 2.860971 GCACGTGGCTAGATACGCAATA 60.861 50.000 18.88 0.00 43.63 1.90
1685 1789 1.852942 CACGTGGCTAGATACGCAAT 58.147 50.000 7.95 0.00 43.63 3.56
1686 1790 0.804544 GCACGTGGCTAGATACGCAA 60.805 55.000 18.88 0.00 43.63 4.85
1687 1791 1.226859 GCACGTGGCTAGATACGCA 60.227 57.895 18.88 0.00 43.63 5.24
1688 1792 1.226859 TGCACGTGGCTAGATACGC 60.227 57.895 18.88 0.00 43.63 4.42
1689 1793 0.870307 GGTGCACGTGGCTAGATACG 60.870 60.000 18.88 15.00 45.15 3.06
1690 1794 0.870307 CGGTGCACGTGGCTAGATAC 60.870 60.000 18.88 3.62 45.15 2.24
1691 1795 1.435925 CGGTGCACGTGGCTAGATA 59.564 57.895 18.88 0.00 45.15 1.98
1692 1796 2.184322 CGGTGCACGTGGCTAGAT 59.816 61.111 18.88 0.00 45.15 1.98
1693 1797 4.735132 GCGGTGCACGTGGCTAGA 62.735 66.667 18.88 0.00 46.52 2.43
1695 1799 3.892740 ATTGCGGTGCACGTGGCTA 62.893 57.895 18.88 16.55 46.52 3.93
1704 1808 1.789116 CCATTTTGCATTGCGGTGC 59.211 52.632 3.84 6.21 45.25 5.01
1705 1809 0.671163 AGCCATTTTGCATTGCGGTG 60.671 50.000 3.84 0.32 0.00 4.94
1706 1810 0.390209 GAGCCATTTTGCATTGCGGT 60.390 50.000 3.84 0.00 0.00 5.68
1707 1811 1.085501 GGAGCCATTTTGCATTGCGG 61.086 55.000 3.84 0.00 0.00 5.69
1708 1812 0.390078 TGGAGCCATTTTGCATTGCG 60.390 50.000 3.84 0.00 0.00 4.85
1709 1813 1.081094 GTGGAGCCATTTTGCATTGC 58.919 50.000 0.46 0.46 0.00 3.56
1710 1814 1.276989 AGGTGGAGCCATTTTGCATTG 59.723 47.619 0.00 0.00 40.61 2.82
1711 1815 1.551883 GAGGTGGAGCCATTTTGCATT 59.448 47.619 0.00 0.00 40.61 3.56
1712 1816 1.188863 GAGGTGGAGCCATTTTGCAT 58.811 50.000 0.00 0.00 40.61 3.96
1713 1817 1.243342 CGAGGTGGAGCCATTTTGCA 61.243 55.000 0.00 0.00 40.61 4.08
1714 1818 1.508088 CGAGGTGGAGCCATTTTGC 59.492 57.895 0.00 0.00 40.61 3.68
1715 1819 1.508088 GCGAGGTGGAGCCATTTTG 59.492 57.895 0.00 0.00 40.61 2.44
1716 1820 2.040544 CGCGAGGTGGAGCCATTTT 61.041 57.895 0.00 0.00 40.61 1.82
1717 1821 2.436646 CGCGAGGTGGAGCCATTT 60.437 61.111 0.00 0.00 40.61 2.32
1754 1858 4.994756 GGGCTGGTTGGTGGGGTG 62.995 72.222 0.00 0.00 0.00 4.61
1794 1898 1.900351 CCAGATCTGAGGTTGCCGA 59.100 57.895 24.62 0.00 0.00 5.54
1797 1901 0.175760 TACGCCAGATCTGAGGTTGC 59.824 55.000 24.62 16.42 0.00 4.17
1799 1903 0.824759 GGTACGCCAGATCTGAGGTT 59.175 55.000 24.62 7.70 34.09 3.50
1806 1910 1.442148 GAGTGGGGTACGCCAGATC 59.558 63.158 30.32 25.15 42.25 2.75
1834 1938 1.812922 GATGAGCTGGCTGTGGACG 60.813 63.158 0.00 0.00 0.00 4.79
1835 1939 1.451028 GGATGAGCTGGCTGTGGAC 60.451 63.158 0.00 0.00 0.00 4.02
1841 1945 2.771762 GAGGGGGATGAGCTGGCT 60.772 66.667 0.00 0.00 0.00 4.75
1843 1947 3.554342 CGGAGGGGGATGAGCTGG 61.554 72.222 0.00 0.00 0.00 4.85
1895 1999 4.671569 GCGCTATCAGGGGAGCCG 62.672 72.222 0.00 0.00 35.13 5.52
1900 2004 4.976925 CGGCAGCGCTATCAGGGG 62.977 72.222 10.99 0.00 0.00 4.79
1925 2029 2.514824 GAGGAGTGAATGGCCCGC 60.515 66.667 0.00 0.00 0.00 6.13
1926 2030 1.153289 CAGAGGAGTGAATGGCCCG 60.153 63.158 0.00 0.00 0.00 6.13
1927 2031 1.452833 GCAGAGGAGTGAATGGCCC 60.453 63.158 0.00 0.00 0.00 5.80
1954 2058 1.579932 CAAGCAGCAGCCTCACTTG 59.420 57.895 0.00 0.00 43.56 3.16
1978 2082 4.083862 GACTCGTGGGGTGGCTCC 62.084 72.222 0.00 0.00 0.00 4.70
1983 2087 2.738521 CAAGCGACTCGTGGGGTG 60.739 66.667 0.00 0.00 0.00 4.61
1984 2088 2.915659 TCAAGCGACTCGTGGGGT 60.916 61.111 0.00 0.00 0.00 4.95
1992 2097 4.379243 CCAGCGGGTCAAGCGACT 62.379 66.667 0.00 0.00 42.21 4.18
2017 2122 1.367471 CCGGTTGTCACAGAGAGCA 59.633 57.895 0.00 0.00 0.00 4.26
2024 2129 2.203139 CAGGCACCGGTTGTCACA 60.203 61.111 2.97 0.00 29.07 3.58
2026 2131 4.947147 GGCAGGCACCGGTTGTCA 62.947 66.667 2.97 0.00 29.07 3.58
2084 2189 1.506493 CAGATGATAGACCGCAAGCC 58.494 55.000 0.00 0.00 0.00 4.35
2090 2195 1.066573 GGGGATGCAGATGATAGACCG 60.067 57.143 0.00 0.00 0.00 4.79
2091 2196 1.280421 GGGGGATGCAGATGATAGACC 59.720 57.143 0.00 0.00 0.00 3.85
2113 2218 1.270839 CGTGGGATAAATGCGGAGGAT 60.271 52.381 0.00 0.00 43.72 3.24
2120 2225 1.152756 AGGGCCGTGGGATAAATGC 60.153 57.895 0.00 0.00 0.00 3.56
2123 2228 2.904905 CGAGGGCCGTGGGATAAA 59.095 61.111 0.65 0.00 0.00 1.40
2132 2237 3.499737 GTGAATGCACGAGGGCCG 61.500 66.667 0.00 0.00 45.44 6.13
2140 2245 1.537202 GAGGGTGTGAAGTGAATGCAC 59.463 52.381 0.00 0.00 45.49 4.57
2141 2246 1.545428 GGAGGGTGTGAAGTGAATGCA 60.545 52.381 0.00 0.00 0.00 3.96
2149 2254 2.347490 CACGGGGAGGGTGTGAAG 59.653 66.667 0.00 0.00 35.66 3.02
2150 2255 3.246112 CCACGGGGAGGGTGTGAA 61.246 66.667 0.00 0.00 35.66 3.18
2251 2356 3.152400 GAGGATGGTACGGGCGGT 61.152 66.667 2.46 2.46 0.00 5.68
2253 2358 4.280494 CCGAGGATGGTACGGGCG 62.280 72.222 0.00 0.00 42.48 6.13
2298 2404 1.582968 CTTCAATTGCTGCGCAGGT 59.417 52.632 36.47 1.28 40.61 4.00
2308 2414 1.709147 CGGAGCTCGGCCTTCAATTG 61.709 60.000 7.83 0.00 34.75 2.32
2329 2435 1.802636 GCTTCAAATAGGCTGCGCA 59.197 52.632 10.98 10.98 0.00 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.