>input_sequence_83024
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-------------------------------------------------ATGGCGGAGTGGTACATGGCGTCGTGGAAGC
TCTCCGTCTCCACCATCCGCGCCCGCAGCTGCCGCGCCTTCTCCTCCGTCAGGCCGCCCACGAACGACCTCCCCGCCTTC
TCTTCCTCCACCGCCACCACC---ATCG------CTGGCGCCGGTGCCGCGGCCTCCATGTAGTCCGCCCGCCCGGACCA
GCCGAGCAGCGGCGCCCACCACTTGCCTCCCTCGGGGGCTCCCGCCGCGCGGACCCGCCCGGCGCCCACGGAGCCAGAGG
CGGATGCGGCGCGGGGCCGGAAAGTCGTTCCCGTCGACGGGCGGGGGGAGAAGGAGACGGCGGATGCAGGCGGTGCCATG
GCCATTAG------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G118200
AGTAGAAGATCTGGAGATACTGTAGTTGCGTATCATGGTGGGTGGTAATGGTTCATCAGTTCGTATAGTACTCCACCACC
GCCATAATGTAAGAGCAAACTAATGAACTATGATGAACTACTCCCTCAGTTCCGTAATATAGTGCCTATAGATTTTTGCA
AAAGTTAAACATTATAAATTTTGATTATATTTATAGAGAAAAGTAGGTACATCTAAATACCAAATGCACATCATTGAATA
CATCATGAGTTATATTTTCAGAATATACAGGTTTAGTATTGTAGATGTAGACAGTTTTTCTTTATACAATTGTCAAAGTT
GGCATAGTTTGACTTCAAAAAATCTATAGGCACTACATTGTGGAATGAAGGGAGTATAATATAATGTAACACAAACTAAT
GAACTAGTAGTATAATATAATGTAACGCA-------AGCGAGGAGTTCCTTTCACATAGACATAGTCTACCCACCGCAAC
CCAACCGAACACAATCAACTTGTGA----AGGTTGGTAGAGATCCTGCGTAGCAGCTACTTACAATGTTTTTGATTT---
--ATGGCTGCATCATAATGTTAGGGCTAATAACACAGAAACATGCTAG------TTGTTGAGGAGAAGACAACTTGGAGT
A-------------TTCAGATCCAGAATTAATCGGTGTTCAGATCCAAAACAGCTACC----------------------
------------AGCACAAGTATCACAGATCTGGGACAACATGTTAACTGCGGATCCCGAATGTTACA--AAATGCGGGG
AATCAGATTGAAACATCTGCGCCTCTAAAACAAGCAGACCGG-----------------GGAGACGAAGGGAATGGATCA
ACCCTAAAACTAGATCTCATTGCCGACCTCTCTCCTCTAAGCTCCTCCGTCACAACAGCTACAAACAGAGACGACTGGTG
ATC-CCCAGATCGTAAGAGGAAACAACTAGGTACACGCACGGGCACATCAGCTTGTCTGGTAGTGTCGGCGAGTTGGCTG
GCGGTCTGTCCGGCGGCCTAGCTAGGTGGAGCGCGCGAGGCGGGAGGCGATGGCGGAGTGGTACATGGCGTCGTGGAAGC
TCTCCGTCTCCACCATCCGCGCCCGCAGCTGCCGCGCCTTCTCCTCCGTCAGGCCGCCCACGAACGACCTCCCCGCCTTC
TCTTCCTCCACCGCCACCACC---ATCG------CTGGCGCCGGTGCCGCGGCCTCCATGTAGTCCGCCCGCCCGGACCA
GCCGAGCAGCGGCGCCCACCACTTGCCTCCCTCGGGGGCTCCCGCCGCGCGGACCCGCCCGGCGCCCACGGAGCCAGAGG
CGGATGCGGCGCGGGGCCGGAAAGTCGTTCCCGTCGACGGGCGGGGGGAGAAGGAGACGGCGGATGCAGGCGGTGCCATG
GCCATTAGCTCGGTCGCTTCCTTCGCTCGTAAGATTCTACTAC-GGGGTTTCTTTGCTTTCGGTTTGGCGAGAGATGATG
GGGATTGTTGTAGACTGTGAATGCT---TGAGCTTGTGAGATGGAGAGCTGGAGATGGCGGAAATTTATAACGGGCCAGG
CCAGGCCAGGGGAAGAGGATGAAGAGTGGATAGGAACGGCGCGTGGACGCGCGGGGTGGGGGTGCGCTTTTCCGTTACGC
GTGACGTGTGATCGAGTAGACTCATGCACGCACCTGGATCACCGCGAG-GACGGCAGCAAATACAGTATGAGAAACGCAA
CAAAGTTTGAACAACAGATAGAGTAAATATTGCGTATCTAGCCACGTGCACCGCAATGCAAAATGGCTCCACCTCGCGCT
TCGCCGTGCTCCCCTCCCACCCCACCAACCAGCCCCTCGACGGCCGCCACTCCGGCGTCGGCAACCTCAGATCTGGCGTA
CCCCACTCCGGGCTCGTCGTCCACAGCCAGCTCATCCCCCTCCGGCCACAGCCACCCGCGGCGTCGCTGGAGCGCCCCCG
GCTCCCCTGATAGCGCTGCCGCACTCCTGCGGGCCATTCACTCCTCTGCGGCGCCTTCAAGTGAGGCTGCTGCTTGGGAG
CGGAGCCACCCCA-CGAGTCGCTTGACCCGCTGGTCCGCGCTGCTCTCTGTGACAACCGGTGCCTGCCGCCTGCCGCGCC
ATCACGCCCTGCGCCGGCCTACCCTCCGGGCTTGCGGTCTATCATCTGCATCCCCCCATCCTCCGCATTTATCCCACGGC
CCTCGTGCATTCACTTCACACCCTCCCCGTGGCCTGTGCCGCGTGCTCCGTGCGACGAGCGCGCTGCTGCTTGCCCGGAA
TGGCAAGTCGTTCGCCCGAAGCGCCGGCGGCGTGCACCGCCCGTACCATCCTCGGCGGGGGCGGTTTATGCGC-GAGACG
CTCACCTGCGCAGCAATTGAAGGCCGAGCTCCGCTGCGCAGCCTATTTGAAGCGC
>chr1A_1
AGTAGAAGATCCGGAGATA-----GTTGCGTATCATGGTGGGTGGTAATGGTTCATCAGTTCGTAGTACTATA-------
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----------TATAATATAATGTAACGCA-------AGCGAGGAGTTCCTTTCACATGG----------CCCACCCCAAC
CCAACCGAACGCAATCAGCTTGTGTATGCAGGTTGGTAAAGATCCTGCGTAGCAGCTG----CAATGTTTTTGATTTGAT
TTATAGCTGCATCATAATGCTATGACAAATGACACAGAAGCCTTGC--TATAGTTTGTTGAGGAGAAGACAACATGGAGC
GCGGCACCGTAGAGTTCAGATCCAGAATTAATCGGTGTTCAGAACCAAAAGAGCCACC----------------------
------------AGCACAAGTATCACAGATCTGGGACAGCATGTTAACTGCAGATCCCTAATGTTACTACAAATGCGGGG
AATCAGATTGAAACATCTGCGCCGGTAAAACAAGCAGGCCGGCGAGCGTCGCGGTGGCCGGAGACGGAGGGAATGGATCA
ACCCTAAAACTAGATCTCATTTCCGACCTCTCTCCTCTAAACTTTAAC----------------ACATGACAACAACAAT
TATAGCAGAAAGG---------------------ACACACAGGCACATCAACTTGTCTGCTAGTGTCGGCGGGTTGGCTG
GCGGTCTGTCCGGCGGCCTAGCTAGGTGGAGCGCGCGAGGCGGGAGGCGATGGCGGAGTGGTACATGGCATCGTGGAAGC
TCTCCGTCTCCACCATCCGCGCCCGCAGCTGCCGCGCCTTCTCCTCCGTCAGGCCGCCCACGAACGACCTCCCCGCCTTC
TCCTCCTCCTCCGCCGCCATCGCCATCGCCATCGCCGGCGCCGGTGCCGCGGCCTCGATGTAGTCCGCCCGCCCAGACCA
GCCGAGCAGTGGCGCCCACCACTTGCCTCCCTCGGGGGCTACCGCCGCGCGGACCCGCCCGGCGCCCACGGAGCCAGAGG
CGGAAGCGGCGCGGGGCCGGAAAGTCGTTCCCGTCGATGGGCGGGGGGAGAAGGAGACGGCGGATGCAGGCGGTGCCATG
TCCATTAGCTCGGTCGCTTGCTTCGCTTGTAAGCTTCTATGTATGGGGTTGCTTTGCTATCGGTTTGGTGAGAGATGATG
GGGA---TTGTAAGCTTTGAATGCT---TGAGCTTGCGAGATGGAGAGTTGGAGATGGCGGAGATTTATAACGGATTAAC
GGGT--CAGGGGAAAAGGATGAAGAGTGGATAGGAACGGCGCGTGGACGCGCGGGGTGGGGGTGCGCTTTTCCGTTACAC
GTGACGTGTGATCGAGTAGACTCATGCACGCACCTGGATCACCGCGAGAGACGGCAGCAAATACACTACGAGCAAA----
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>chr1B_5
----GAAGATCTGGAGATC-----GTTGCGTATCATGGTGGGTGGTAATGGTTCGTCAGTTCGTAGT-------------
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--------------ATATAATGTAACGCAAGCGACAAGCGAGGAGTTCCTTTCACATAGACATAGTCCACCCACCCCAAC
CCAACCGAACACAATCAACTTGTGA----AGGTTGGTACAGATCCTGCGTAGCAGCTA----TAATGTTTTTGATTC---
--ATAGGTGCATCATACTGTTAGGGTAAATAACACAGAAGCATGCTAGTATAGTTTGTTGAGGAGAAGACAGCATGGAGC
GCCATAAT-----GTTCAGATCCAGATTTAATCGGTTTTCAGATACAGATTTAATCAGTGTTCAGATCCAGATTTAACAC
AGAAACAATGCTAGTACAAGTACCACAGATCTGGGAC-----------------------------------ATGCGGGG
AATCATATTGAAACATCTGCGCCTCTAAAACAAGCAGACCGACGAGCGTCGCGGTGGCCGGAGAAGAAGGGAATGGATCA
ACCCTAAAACAAGATCTCATTTCCGACTTCTCTCATCTAAGCTCTAAC----------------ACAGAAAGGACTGGGT
GATGCCCAGATCGAAAGAGGGAACAACTAGGTACACGCACGGGCACAGCAGCATGTCTGGTTGTGTCGGCGAGTTGGCTG
GCGGC----------------CTAGGTGGAGCGGGCGAGGCGGGAGGCGATGGCGGAGTGGTACATGGCGTCGTGGAAGC
TCTCCGTCTCCACCATCCGCGCCCGCAGCTGCCGCGCCTTCTCCTCCGTCAGGCCGCCCACGAACGACCTCCCCGCCTTC
TCCTCCTCCTCCTCCACCACCGCCATCG------CCGGCGCCGGTGCCGCGGCCTCGATGTAGTCCGCCCGCCCGGACCA
GCCGAGCAGCGGCGCCCACCACTTGCCTCCCTCGGGGGCTCCCGCCGCGCGGACCCGCCCGGCGCCCACGGAGCTAGAGG
CGGAAGCGGCGCGGGGCCCGAAAGTCGTTCCCGTAGATGGGCGGGGGGAGAAGGAGACGGCGGATGCTGACGGTGCCATG
GCCATTAGCTCGGTCGCTTGCTTGGCTCGTAAGATTCTACTAC-GGGGTTTCTTTGCTTTCGGTTTGGTGAGAGATGGTG
AGGACTGTTGTAAACTGTGAATGCTGGTTGAGCTTGCGAGATGGAGAGCTGGAGATGGTGGGAATTTATAA---------
-----CCAGGGCAAGAGGATGAAGAGTGGATAGGAACGGCGCGTGGGCGCGCGGTGTGGGGGTGCGCTTTTCCGTTACGC
GTGACGCATGATCGCCTGGACTCATGCA----------------------------------------------------
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>chr4D_1720
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--------------------------------------------------------------ATGGCTCCCTTGCGCGCT
CCACCGCGCTCCCCTCCACCCCCACCAACCAGCCCCTCGGCGGCCGCCACTCCGGCGCCGACGACCTCACATCTGGCGTA
CCCCACTCCGGGCTCGTGATCCACCGACAGCTCGTCCCCCTCCGGCCACCCGCGCCAA------CGCTGGAGCGCCCCTG
GCTTCCCTGACAGCGCTGCCGCGCTTCTCGAGGCCATTCACTCCTCTGCGGCGCCTTTAAGTGAGGCTGCTGCTCGGGGG
CAGAGCTGCCCCTGCGCGTCGCTTGACCCGCCGGTCCGCGCAGCTCTCAGCGGAGACCGGCGCCTGCTGCCTGCCGCGCC
ATCACTCCCTGCGCCGGCCTACCCTCCGAGCTTGTTGTCTATCATCTGCATCCCCCCGTCCTCCACACTTATCCCGTGGC
CTCCCCGCATTCATCCCCC-CCCTCCCCGTGGCATGTGGCGCGTGCTTCGTGCAACGTGCGCGCTGCTGCTTGCCCGGAA
TGGCAACTCATTCGCTCAAGGCGCCGGCGGCGTGCGCGGCCCGTACCATCCTCGGCGGGGGCGGTTTATGGCATGAGACG
CTCGCCTGCGCAGAAATTGAAGGCCAAGCTCCGCCGCGCGGCCTATTTGAAGCGC
>SNPs
-------------------SSSSS-----------------------------------------SSSSSS-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS---------------------------------------------------------S-------S----
--------------------------------------S-------------------SSSS------------------
----S---------------------S------------S---------------------------------S-----S
S-------------------------------------------------S-----------------------------
--------------------------------------S------------S------S--------S------------
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---------------------S----------------------SSS-SSSSSSSSSSSSSSSS-----S-S------SS
SSS----------S------S-----------------------------------------------------------
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--S------S-------------------------S--------------------S-----------------------
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----S--------------------------------S------------------------------------------
-------------------S------------------------------------------------S-----------
----S-------S-----------------------S-------------------------------------SSS-SS
SSSSS---------------------------------------------------------------------------
-----------------------------------------------------------------S--S---S--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SSSS------
S-S---S----------SS--------------------S-----------------S--S-S------S----------
-----------------SS-----S-S------S---------------SSS-S--SSSSSSSS--------------S-
---S------S-----------S--S--SSS--------------------------S----------------S---S-
-S----SS----S---S--------------S---------S------S-S-SSS-----S------S------------
-----S----------------------S-----SS---------------------S------S--S-------SS---
-SS-SS-------SSS-S-S-------------S----S--------S-----S---S----------------------
------S--S-----S-S-S---------------S-S--------------------------------SSS-------
---S---------S-----------S--------S----S---------------
>forward_938
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--------------------------------------AAGCTCCTCCGTCACAACAG----------------------
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>reverse_1901
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------------------------------------------------------------GCAACCTCAGATCTGGCGTA
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