Multiple sequence alignment - TraesCS1D01G093700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G093700 chr1D 100.000 2114 0 0 562 2675 79171838 79169725 0.000000e+00 3904
1 TraesCS1D01G093700 chr1D 100.000 195 0 0 1 195 79172399 79172205 7.040000e-96 361
2 TraesCS1D01G093700 chr1A 90.926 2094 113 26 562 2614 98024261 98022204 0.000000e+00 2743
3 TraesCS1D01G093700 chr1A 92.517 147 10 1 1 147 98024875 98024730 2.700000e-50 209
4 TraesCS1D01G093700 chr1B 92.727 935 39 13 870 1777 130364353 130363421 0.000000e+00 1323
5 TraesCS1D01G093700 chr1B 92.773 844 36 9 1779 2607 130362574 130361741 0.000000e+00 1197
6 TraesCS1D01G093700 chr1B 93.796 274 12 2 562 830 130366181 130365908 8.920000e-110 407


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G093700 chr1D 79169725 79172399 2674 True 2132.500000 3904 100.000000 1 2675 2 chr1D.!!$R1 2674
1 TraesCS1D01G093700 chr1A 98022204 98024875 2671 True 1476.000000 2743 91.721500 1 2614 2 chr1A.!!$R1 2613
2 TraesCS1D01G093700 chr1B 130361741 130366181 4440 True 975.666667 1323 93.098667 562 2607 3 chr1B.!!$R1 2045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
979 2608 0.178995 TCCTGCATTGCACCAAGTCA 60.179 50.0 7.38 0.0 33.79 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2079 4558 0.034756 TCGTGGTGGATGTCTGGTTG 59.965 55.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.185056 GCCAGTGGTTCATGGTAACTAAAAT 59.815 40.000 11.74 0.00 38.91 1.82
37 38 6.376018 GCCAGTGGTTCATGGTAACTAAAATA 59.624 38.462 11.74 0.00 38.91 1.40
123 124 8.691661 ACCTTTCTTTTTAGATGTCTAGCAAA 57.308 30.769 0.00 0.00 0.00 3.68
128 129 7.530010 TCTTTTTAGATGTCTAGCAAACATGC 58.470 34.615 0.54 0.00 37.47 4.06
148 149 2.749076 GCATGTATGTTGCAACAGGAGA 59.251 45.455 33.44 23.27 43.04 3.71
149 150 3.191162 GCATGTATGTTGCAACAGGAGAA 59.809 43.478 33.44 18.90 43.04 2.87
150 151 4.321156 GCATGTATGTTGCAACAGGAGAAA 60.321 41.667 33.44 16.44 43.04 2.52
151 152 5.771469 CATGTATGTTGCAACAGGAGAAAA 58.229 37.500 33.44 16.70 43.04 2.29
152 153 5.843673 TGTATGTTGCAACAGGAGAAAAA 57.156 34.783 33.44 10.44 43.04 1.94
179 180 0.457851 ATCACGAGCTCCTAGCACAC 59.542 55.000 8.47 0.00 45.56 3.82
188 189 2.831333 CTCCTAGCACACTAAGCATGG 58.169 52.381 0.00 0.00 0.00 3.66
671 749 7.435488 ACGATGACATGAATACTTACTTAGCAC 59.565 37.037 0.00 0.00 0.00 4.40
912 2516 9.454859 TCAAGGAGGAAAGCAAAAATTTAAAAA 57.545 25.926 0.00 0.00 0.00 1.94
956 2566 0.673985 GCAAAAACCTCCTGACCCAC 59.326 55.000 0.00 0.00 0.00 4.61
979 2608 0.178995 TCCTGCATTGCACCAAGTCA 60.179 50.000 7.38 0.00 33.79 3.41
984 2613 1.608055 CATTGCACCAAGTCACCTGA 58.392 50.000 0.00 0.00 0.00 3.86
994 2623 1.227645 GTCACCTGACTGCAGCACA 60.228 57.895 15.27 13.56 41.65 4.57
1194 2823 2.989824 CCTCACCACGTCGTCCCT 60.990 66.667 0.00 0.00 0.00 4.20
1325 2954 2.202623 GCGGTACACGGAGCTCAG 60.203 66.667 17.19 14.86 44.51 3.35
1331 2960 4.463879 CACGGAGCTCAGGGCCAG 62.464 72.222 18.37 0.00 43.05 4.85
1676 3305 1.455032 TGCCCGGCGAGATCTAGAA 60.455 57.895 9.30 0.00 0.00 2.10
1736 3365 0.248215 GATCGATGTTGGCTTTGGCG 60.248 55.000 0.54 0.00 39.81 5.69
1742 3371 0.671251 TGTTGGCTTTGGCGGTTTAG 59.329 50.000 0.00 0.00 39.81 1.85
1835 4313 4.151070 GTGCATTAGTCGTGTGTTCATTG 58.849 43.478 0.00 0.00 0.00 2.82
1884 4362 2.417239 TCGGTTTTTACCATCATCGTGC 59.583 45.455 0.00 0.00 0.00 5.34
1897 4375 0.110486 ATCGTGCCCTGGAAAACTGT 59.890 50.000 0.00 0.00 0.00 3.55
1929 4408 2.547218 CGTACAGTACAACCTTGCCTGT 60.547 50.000 11.37 12.82 42.57 4.00
1960 4439 2.859538 CAAAATGAGCTTTGTGTGCGTT 59.140 40.909 0.00 0.00 32.64 4.84
2109 4588 2.281484 ACCACGACGCCTGCAAAT 60.281 55.556 0.00 0.00 0.00 2.32
2122 4601 2.294233 CCTGCAAATGCCGCATTAGTAT 59.706 45.455 18.80 0.49 39.02 2.12
2123 4602 3.558505 CTGCAAATGCCGCATTAGTATC 58.441 45.455 18.80 7.35 39.02 2.24
2170 4650 2.284798 GACTCCTCGATCGCCTGCAA 62.285 60.000 11.09 0.00 0.00 4.08
2175 4666 1.202973 CTCGATCGCCTGCAAGTACG 61.203 60.000 11.09 0.00 33.48 3.67
2505 4996 1.794222 GACCGCACCATACTTGCAC 59.206 57.895 0.00 0.00 40.20 4.57
2564 5059 3.639162 TGCCTTTGCAAGAAACGTG 57.361 47.368 0.00 0.00 46.66 4.49
2575 5073 4.624024 TGCAAGAAACGTGTAGTAGCATAC 59.376 41.667 0.00 0.00 43.47 2.39
2601 5099 1.281899 GCGTCTCCGATCCTTTCAAG 58.718 55.000 0.00 0.00 35.63 3.02
2604 5106 2.924290 CGTCTCCGATCCTTTCAAGTTC 59.076 50.000 0.00 0.00 35.63 3.01
2614 5116 5.772825 TCCTTTCAAGTTCCATTTCACTG 57.227 39.130 0.00 0.00 0.00 3.66
2615 5117 5.200483 TCCTTTCAAGTTCCATTTCACTGT 58.800 37.500 0.00 0.00 0.00 3.55
2616 5118 5.067674 TCCTTTCAAGTTCCATTTCACTGTG 59.932 40.000 0.17 0.17 0.00 3.66
2617 5119 5.163519 CCTTTCAAGTTCCATTTCACTGTGT 60.164 40.000 7.79 0.00 0.00 3.72
2618 5120 5.913137 TTCAAGTTCCATTTCACTGTGTT 57.087 34.783 7.79 0.00 0.00 3.32
2619 5121 5.247507 TCAAGTTCCATTTCACTGTGTTG 57.752 39.130 7.79 4.69 0.00 3.33
2620 5122 4.704540 TCAAGTTCCATTTCACTGTGTTGT 59.295 37.500 7.79 0.00 0.00 3.32
2621 5123 5.883115 TCAAGTTCCATTTCACTGTGTTGTA 59.117 36.000 7.79 0.00 0.00 2.41
2622 5124 6.545666 TCAAGTTCCATTTCACTGTGTTGTAT 59.454 34.615 7.79 0.00 0.00 2.29
2623 5125 7.717436 TCAAGTTCCATTTCACTGTGTTGTATA 59.283 33.333 7.79 0.00 0.00 1.47
2624 5126 7.435068 AGTTCCATTTCACTGTGTTGTATAC 57.565 36.000 7.79 0.00 0.00 1.47
2625 5127 6.147164 AGTTCCATTTCACTGTGTTGTATACG 59.853 38.462 7.79 0.00 0.00 3.06
2626 5128 5.543714 TCCATTTCACTGTGTTGTATACGT 58.456 37.500 7.79 0.00 0.00 3.57
2627 5129 5.636121 TCCATTTCACTGTGTTGTATACGTC 59.364 40.000 7.79 0.00 0.00 4.34
2628 5130 5.407084 CCATTTCACTGTGTTGTATACGTCA 59.593 40.000 7.79 0.00 0.00 4.35
2629 5131 6.401047 CCATTTCACTGTGTTGTATACGTCAG 60.401 42.308 7.79 6.62 37.35 3.51
2630 5132 3.571571 TCACTGTGTTGTATACGTCAGC 58.428 45.455 7.79 0.00 35.88 4.26
2631 5133 3.254903 TCACTGTGTTGTATACGTCAGCT 59.745 43.478 7.79 0.00 35.88 4.24
2632 5134 3.364920 CACTGTGTTGTATACGTCAGCTG 59.635 47.826 7.63 7.63 35.88 4.24
2633 5135 2.333926 TGTGTTGTATACGTCAGCTGC 58.666 47.619 9.47 3.23 0.00 5.25
2634 5136 2.029380 TGTGTTGTATACGTCAGCTGCT 60.029 45.455 9.47 0.00 0.00 4.24
2635 5137 2.993899 GTGTTGTATACGTCAGCTGCTT 59.006 45.455 9.47 0.40 0.00 3.91
2636 5138 4.171005 GTGTTGTATACGTCAGCTGCTTA 58.829 43.478 9.47 2.85 0.00 3.09
2637 5139 4.624024 GTGTTGTATACGTCAGCTGCTTAA 59.376 41.667 9.47 0.00 0.00 1.85
2638 5140 4.624024 TGTTGTATACGTCAGCTGCTTAAC 59.376 41.667 9.47 0.32 0.00 2.01
2639 5141 4.713824 TGTATACGTCAGCTGCTTAACT 57.286 40.909 9.47 0.00 0.00 2.24
2640 5142 4.421058 TGTATACGTCAGCTGCTTAACTG 58.579 43.478 9.47 1.62 35.15 3.16
2641 5143 2.363788 TACGTCAGCTGCTTAACTGG 57.636 50.000 9.47 0.00 34.57 4.00
2642 5144 0.320771 ACGTCAGCTGCTTAACTGGG 60.321 55.000 9.47 0.00 34.57 4.45
2643 5145 0.037326 CGTCAGCTGCTTAACTGGGA 60.037 55.000 9.47 0.00 34.57 4.37
2644 5146 1.406069 CGTCAGCTGCTTAACTGGGAT 60.406 52.381 9.47 0.00 34.57 3.85
2645 5147 2.716217 GTCAGCTGCTTAACTGGGATT 58.284 47.619 9.47 0.00 34.57 3.01
2646 5148 2.421424 GTCAGCTGCTTAACTGGGATTG 59.579 50.000 9.47 0.00 34.57 2.67
2647 5149 2.040278 TCAGCTGCTTAACTGGGATTGT 59.960 45.455 9.47 0.00 34.57 2.71
2648 5150 2.821969 CAGCTGCTTAACTGGGATTGTT 59.178 45.455 0.00 0.00 0.00 2.83
2649 5151 2.821969 AGCTGCTTAACTGGGATTGTTG 59.178 45.455 0.00 0.00 0.00 3.33
2650 5152 2.672195 GCTGCTTAACTGGGATTGTTGC 60.672 50.000 0.00 0.00 0.00 4.17
2651 5153 1.892474 TGCTTAACTGGGATTGTTGCC 59.108 47.619 0.00 0.00 0.00 4.52
2652 5154 2.171003 GCTTAACTGGGATTGTTGCCT 58.829 47.619 0.00 0.00 33.70 4.75
2653 5155 2.562738 GCTTAACTGGGATTGTTGCCTT 59.437 45.455 0.00 0.00 33.70 4.35
2654 5156 3.006859 GCTTAACTGGGATTGTTGCCTTT 59.993 43.478 0.00 0.00 33.70 3.11
2655 5157 4.219725 GCTTAACTGGGATTGTTGCCTTTA 59.780 41.667 0.00 0.00 33.70 1.85
2656 5158 5.105351 GCTTAACTGGGATTGTTGCCTTTAT 60.105 40.000 0.00 0.00 33.70 1.40
2657 5159 6.096282 GCTTAACTGGGATTGTTGCCTTTATA 59.904 38.462 0.00 0.00 33.70 0.98
2658 5160 7.639113 TTAACTGGGATTGTTGCCTTTATAG 57.361 36.000 0.00 0.00 33.70 1.31
2659 5161 3.954258 ACTGGGATTGTTGCCTTTATAGC 59.046 43.478 0.00 0.00 33.70 2.97
2660 5162 3.953612 CTGGGATTGTTGCCTTTATAGCA 59.046 43.478 0.00 0.00 38.81 3.49
2671 5173 6.598753 TGCCTTTATAGCAATTCTCGTAAC 57.401 37.500 0.00 0.00 37.28 2.50
2672 5174 5.526111 TGCCTTTATAGCAATTCTCGTAACC 59.474 40.000 0.00 0.00 37.28 2.85
2673 5175 5.049612 GCCTTTATAGCAATTCTCGTAACCC 60.050 44.000 0.00 0.00 0.00 4.11
2674 5176 5.469084 CCTTTATAGCAATTCTCGTAACCCC 59.531 44.000 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.200373 AGTTACCATGAACCACTGGC 57.800 50.000 0.00 0.00 35.88 4.85
128 129 5.375417 TTTCTCCTGTTGCAACATACATG 57.625 39.130 31.17 19.04 38.41 3.21
151 152 5.698545 GCTAGGAGCTCGTGATATCATTTTT 59.301 40.000 18.96 0.00 38.45 1.94
152 153 5.221521 TGCTAGGAGCTCGTGATATCATTTT 60.222 40.000 18.96 0.00 42.97 1.82
153 154 4.281941 TGCTAGGAGCTCGTGATATCATTT 59.718 41.667 18.96 0.00 42.97 2.32
154 155 3.829026 TGCTAGGAGCTCGTGATATCATT 59.171 43.478 18.96 0.00 42.97 2.57
155 156 3.192422 GTGCTAGGAGCTCGTGATATCAT 59.808 47.826 18.96 0.00 42.97 2.45
156 157 2.554462 GTGCTAGGAGCTCGTGATATCA 59.446 50.000 18.96 0.00 42.97 2.15
157 158 2.554462 TGTGCTAGGAGCTCGTGATATC 59.446 50.000 18.96 0.00 42.97 1.63
158 159 2.294791 GTGTGCTAGGAGCTCGTGATAT 59.705 50.000 18.96 0.00 42.97 1.63
159 160 1.676529 GTGTGCTAGGAGCTCGTGATA 59.323 52.381 18.96 3.12 42.97 2.15
160 161 0.457851 GTGTGCTAGGAGCTCGTGAT 59.542 55.000 18.96 2.03 42.97 3.06
161 162 0.609406 AGTGTGCTAGGAGCTCGTGA 60.609 55.000 18.96 0.00 42.97 4.35
162 163 1.095600 TAGTGTGCTAGGAGCTCGTG 58.904 55.000 18.96 9.82 42.97 4.35
163 164 1.746220 CTTAGTGTGCTAGGAGCTCGT 59.254 52.381 14.25 14.25 42.97 4.18
164 165 1.535015 GCTTAGTGTGCTAGGAGCTCG 60.535 57.143 7.83 0.00 42.97 5.03
165 166 1.478510 TGCTTAGTGTGCTAGGAGCTC 59.521 52.381 4.71 4.71 42.97 4.09
166 167 1.561643 TGCTTAGTGTGCTAGGAGCT 58.438 50.000 0.00 0.00 42.97 4.09
167 168 2.208431 CATGCTTAGTGTGCTAGGAGC 58.792 52.381 0.00 0.00 42.82 4.70
168 169 2.831333 CCATGCTTAGTGTGCTAGGAG 58.169 52.381 0.00 0.00 0.00 3.69
169 170 1.134401 GCCATGCTTAGTGTGCTAGGA 60.134 52.381 0.00 0.00 0.00 2.94
170 171 1.134280 AGCCATGCTTAGTGTGCTAGG 60.134 52.381 0.00 0.00 33.89 3.02
171 172 2.322355 AGCCATGCTTAGTGTGCTAG 57.678 50.000 0.00 0.00 33.89 3.42
172 173 3.904800 TTAGCCATGCTTAGTGTGCTA 57.095 42.857 0.00 0.00 40.44 3.49
649 727 7.182817 AGGTGCTAAGTAAGTATTCATGTCA 57.817 36.000 0.00 0.00 0.00 3.58
671 749 7.105241 AGCAGCTTAAAATTTCCATAGAAGG 57.895 36.000 0.00 0.00 32.35 3.46
956 2566 2.757099 GGTGCAATGCAGGAGGGG 60.757 66.667 8.73 0.00 40.08 4.79
979 2608 1.097547 GTGTTGTGCTGCAGTCAGGT 61.098 55.000 16.64 0.00 40.65 4.00
984 2613 0.532640 TCATCGTGTTGTGCTGCAGT 60.533 50.000 16.64 0.00 0.00 4.40
994 2623 2.358247 GGCGGTGGTCATCGTGTT 60.358 61.111 5.51 0.00 37.24 3.32
1194 2823 1.213537 CTCGGCGGAGGAAACGTAA 59.786 57.895 13.25 0.00 36.61 3.18
1305 2934 3.984200 GAGCTCCGTGTACCGCCAC 62.984 68.421 0.87 0.00 34.38 5.01
1521 3150 2.661537 TTCTGCACGGTGCTCACG 60.662 61.111 30.81 17.40 45.31 4.35
1736 3365 3.071479 TCGCCATGAGAACAACTAAACC 58.929 45.455 0.00 0.00 0.00 3.27
1742 3371 0.734889 CCCATCGCCATGAGAACAAC 59.265 55.000 0.00 0.00 30.57 3.32
1800 4274 1.237285 AATGCACGTCAAGGAGCCAC 61.237 55.000 0.00 0.00 0.00 5.01
1884 4362 1.609208 CTGGTCACAGTTTTCCAGGG 58.391 55.000 0.00 0.00 42.38 4.45
1897 4375 2.444004 TACTGTACGGCCCCTGGTCA 62.444 60.000 0.23 0.00 0.00 4.02
1929 4408 4.782019 AAGCTCATTTTGGCGTGAAATA 57.218 36.364 0.00 0.00 0.00 1.40
1960 4439 2.306255 GATTACCGGCTTGCCGAGGA 62.306 60.000 32.16 17.67 34.88 3.71
2079 4558 0.034756 TCGTGGTGGATGTCTGGTTG 59.965 55.000 0.00 0.00 0.00 3.77
2080 4559 0.034896 GTCGTGGTGGATGTCTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
2081 4560 1.671742 GTCGTGGTGGATGTCTGGT 59.328 57.895 0.00 0.00 0.00 4.00
2082 4561 1.446099 CGTCGTGGTGGATGTCTGG 60.446 63.158 0.00 0.00 0.00 3.86
2083 4562 2.094659 GCGTCGTGGTGGATGTCTG 61.095 63.158 0.00 0.00 0.00 3.51
2084 4563 2.261671 GCGTCGTGGTGGATGTCT 59.738 61.111 0.00 0.00 0.00 3.41
2085 4564 2.813908 GGCGTCGTGGTGGATGTC 60.814 66.667 0.00 0.00 0.00 3.06
2086 4565 3.311110 AGGCGTCGTGGTGGATGT 61.311 61.111 0.00 0.00 0.00 3.06
2109 4588 0.466543 AACGGGATACTAATGCGGCA 59.533 50.000 4.58 4.58 0.00 5.69
2138 4618 1.840635 GAGGAGTCAATGGGCTAACCT 59.159 52.381 0.00 0.00 41.11 3.50
2170 4650 0.248539 GCGCTTCGATCCTTCGTACT 60.249 55.000 0.00 0.00 45.65 2.73
2175 4666 3.977568 CGCGCGCTTCGATCCTTC 61.978 66.667 30.48 0.00 41.67 3.46
2224 4715 4.382541 CCCCCTTCCCCTTGCACC 62.383 72.222 0.00 0.00 0.00 5.01
2228 4719 3.358824 ATGGCCCCCTTCCCCTTG 61.359 66.667 0.00 0.00 0.00 3.61
2505 4996 2.042104 CTTGCAAGCAAAGAAGTCCG 57.958 50.000 14.65 0.00 35.33 4.79
2531 5026 4.992951 GCAAAGGCATGAAAAGAATCAAGT 59.007 37.500 0.00 0.00 40.72 3.16
2564 5059 2.287427 ACGCCATCACGTATGCTACTAC 60.287 50.000 0.00 0.00 46.19 2.73
2601 5099 6.073440 ACGTATACAACACAGTGAAATGGAAC 60.073 38.462 7.81 3.33 0.00 3.62
2604 5106 5.407084 TGACGTATACAACACAGTGAAATGG 59.593 40.000 7.81 0.00 0.00 3.16
2614 5116 2.607187 AGCAGCTGACGTATACAACAC 58.393 47.619 20.43 0.00 0.00 3.32
2615 5117 3.313012 AAGCAGCTGACGTATACAACA 57.687 42.857 20.43 1.58 0.00 3.33
2616 5118 4.863131 AGTTAAGCAGCTGACGTATACAAC 59.137 41.667 20.43 8.77 0.00 3.32
2617 5119 4.862574 CAGTTAAGCAGCTGACGTATACAA 59.137 41.667 20.43 0.00 35.12 2.41
2618 5120 4.421058 CAGTTAAGCAGCTGACGTATACA 58.579 43.478 20.43 0.00 35.12 2.29
2619 5121 3.797256 CCAGTTAAGCAGCTGACGTATAC 59.203 47.826 20.43 6.94 35.12 1.47
2620 5122 3.181479 CCCAGTTAAGCAGCTGACGTATA 60.181 47.826 20.43 0.00 35.12 1.47
2621 5123 2.418746 CCCAGTTAAGCAGCTGACGTAT 60.419 50.000 20.43 0.00 35.12 3.06
2622 5124 1.067142 CCCAGTTAAGCAGCTGACGTA 60.067 52.381 20.43 8.73 35.12 3.57
2623 5125 0.320771 CCCAGTTAAGCAGCTGACGT 60.321 55.000 20.43 9.78 35.12 4.34
2624 5126 0.037326 TCCCAGTTAAGCAGCTGACG 60.037 55.000 20.43 3.29 35.12 4.35
2625 5127 2.409948 ATCCCAGTTAAGCAGCTGAC 57.590 50.000 20.43 9.11 35.12 3.51
2626 5128 2.040278 ACAATCCCAGTTAAGCAGCTGA 59.960 45.455 20.43 0.00 35.12 4.26
2627 5129 2.440409 ACAATCCCAGTTAAGCAGCTG 58.560 47.619 10.11 10.11 33.07 4.24
2628 5130 2.821969 CAACAATCCCAGTTAAGCAGCT 59.178 45.455 0.00 0.00 0.00 4.24
2629 5131 2.672195 GCAACAATCCCAGTTAAGCAGC 60.672 50.000 0.00 0.00 0.00 5.25
2630 5132 2.094545 GGCAACAATCCCAGTTAAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
2631 5133 1.892474 GGCAACAATCCCAGTTAAGCA 59.108 47.619 0.00 0.00 0.00 3.91
2632 5134 2.171003 AGGCAACAATCCCAGTTAAGC 58.829 47.619 0.00 0.00 41.41 3.09
2633 5135 4.871933 AAAGGCAACAATCCCAGTTAAG 57.128 40.909 0.00 0.00 41.41 1.85
2634 5136 6.096282 GCTATAAAGGCAACAATCCCAGTTAA 59.904 38.462 0.00 0.00 41.41 2.01
2635 5137 5.592688 GCTATAAAGGCAACAATCCCAGTTA 59.407 40.000 0.00 0.00 41.41 2.24
2636 5138 4.402474 GCTATAAAGGCAACAATCCCAGTT 59.598 41.667 0.00 0.00 41.41 3.16
2637 5139 3.954258 GCTATAAAGGCAACAATCCCAGT 59.046 43.478 0.00 0.00 41.41 4.00
2638 5140 3.953612 TGCTATAAAGGCAACAATCCCAG 59.046 43.478 0.00 0.00 36.71 4.45
2639 5141 3.974719 TGCTATAAAGGCAACAATCCCA 58.025 40.909 0.00 0.00 36.71 4.37
2648 5150 5.526111 GGTTACGAGAATTGCTATAAAGGCA 59.474 40.000 0.00 0.00 37.97 4.75
2649 5151 5.049612 GGGTTACGAGAATTGCTATAAAGGC 60.050 44.000 0.00 0.00 0.00 4.35
2650 5152 5.469084 GGGGTTACGAGAATTGCTATAAAGG 59.531 44.000 0.00 0.00 0.00 3.11
2651 5153 6.541111 GGGGTTACGAGAATTGCTATAAAG 57.459 41.667 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.