>input_sequence_72067
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--------------------------------------------------------------------ATGACCACCGCC
GAGCCTCCCATTCCGCCGTCGCCGACCAGCCCTCGCGACAGGGTGCGGCGACGGCAGTGCGCGCTCGCGCTGGCTGCCGC
GGCCGCCGCCTGCCTAGCGCCGGTGGCCGTGCTCCTGGCGGTGCTCGTCCTCGCGCCGTCGCTCCTCCCACGGCTCCTCC
TCCGGCCTCACCACGTCGTCCCTTACGTTTCCTCCGCCGAGCTCCGCCTCCTCGCCTTCGACCCCGCCGCCTCCGCCGTC
TCCTACAACCTCTCCGCCACGCTCAGGTTCGACAGCCCGTGCCTCTACTGCACGTGGCGGTACACGGAGCTCAGGGCCAG
GCCTTCCTACGCCGGGCAGCAGCTGGGCGCTGCCGCGGCGCTACCGGAGCTCACGCAGCGGAGGGGCAGCGACGCGCACG
ACGTGGCGTGGGCGGGGACGCAGAAAGTGCCGCCCGGCCGGCGCGCCCGCGCCGTGGCCGCGGCGCTCGCGCGGGAGGAG
GCCGAGGGGCGGCTCGGCGTCAAGGTGGCCGTGAGCACCGTGCAGAACGGCGCGCGGAGCGACTTCGCGTGCGTGCTGAG
CTTCCCTGCAGTGTCTGCACCGCGGCGAGGAGGGACCGGGAGCCCCGCCTCCGCGGTGTTCGACGGCGGCAGGTGCGTCG
ACGCCGTGCCCGGCGAGATCTAG---------------------------------------------------------
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>chr1D_1_TraesCS1D01G093700
TCCTAGATGACCGCCAGTGGTTCATGGTAACTAAAATATAATTACTAGCAGCATATATGCCAAGGAAATAATTACTTCCA
TCTAAAAGATATGGACCGACCTTTCTTTTTAGATGTCTAGCAAACATGCATGTATGTTGCAACAGGAGAAAAAAAATGAT
ATCACGAGCTCCTAGCACACTAAGCATGGCTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
N-----------------------------------------------------------------------------AA
GTGAGGGAAATTATGTGGAGTTTTCTAACTGGCTAGAGGCAATTAGATAATTACAATTAAAATTAATCAGCAAACATAAT
TGACGATGACATGAATACTTACTTAGCACCTTCTATGGAAATTTTAAGCTGCTCAATTATGATGTCACTAT-----AAAA
AA----CAGTGCAACAGTGGGGTACCCAGATTATTTAAAATTGCCCCGCTTGTCATCGACACAGTGCATCATTTGGAAAA
TAGAAAATTCCAGTGGCATATAAGAAATGAAAGTTATCCCG---------------------------------------
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----------------------------------------------------------------------AGATACATGC
ATT-----------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
GTTGCTTCTTTTGCTTTTGC--------------------------------------------------AATGGTGGTC
TCTTCTTTCAAGGAGGAAAGC--AAAAATTTAAAAAAAAAAA------AAAAGCAGAGGAAGCAAAGCAAAAACCTCCTG
ACCCAC-------------------CCCTCCTGCATTGCACCAAGTCACCTGACTGCAGCACAACACGATGACCACCGCC
GAGCCTCCCATTCCGCCGTCGCCGACCAGCCCTCGCGACAGGGTGCGGCGACGGCAGTGCGCGCTCGCGCTGGCTGCCGC
GGCCGCCGCCTGCCTAGCGCCGGTGGCCGTGCTCCTGGCGGTGCTCGTCCTCGCGCCGTCGCTCCTCCCACGGCTCCTCC
TCCGGCCTCACCACGTCGTCCCTTACGTTTCCTCCGCCGAGCTCCGCCTCCTCGCCTTCGACCCCGCCGCCTCCGCCGTC
TCCTACAACCTCTCCGCCACGCTCAGGTTCGACAGCCCGTGCCTCTACTGCACGTGGCGGTACACGGAGCTCAGGGCCAG
GCCTTCCTACGCCGGGCAGCAGCTGGGCGCTGCCGCGGCGCTACCGGAGCTCACGCAGCGGAGGGGCAGCGACGCGCACG
ACGTGGCGTGGGCGGGGACGCAGAAAGTGCCGCCCGGCCGGCGCGCCCGCGCCGTGGCCGCGGCGCTCGCGCGGGAGGAG
GCCGAGGGGCGGCTCGGCGTCAAGGTGGCCGTGAGCACCGTGCAGAACGGCGCGCGGAGCGACTTCGCGTGCGTGCTGAG
CTTCCCTGCAGTGTCTGCACCGCGGCGAGGAGGGACCGGGAGCCCCGCCTCCGCGGTGTTCGACGGCGGCAGGTGCGTCG
ACGCCGTGCCCGGCGAGATCTAGAAGCCGGTCGATCGGCCCGCTGGTGCATATGGCTTGGCGAGCGATCGATGTTGGCTT
TGGCGGTTTAGTTGTTCTCATGGCGATGGGGGAGCGCCGGTGCTTG----------------------------------
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-----------CCACGTACGGCGCCACGCCACAGTGGCT----CCTTGACGTGCATTAGTCGTGTGTTCATTGTCATCAC
GTGGCGTGGTATGTTCTTGTTCGGTTTTTACCATCATCGTGCCCTGGAAAACTGTGACCAGGGGCCGTACAGTACA-ACC
TTGCCTGTATTTCACGCCAAAATGAGCTTTGTGTGCGTTCCTCGGCAAGCCGGTAATCCGATTCCCACTACGCACGTTAC
GTATCGGCCGGGGCGCACGATCCGACTCCGCGACCTCCGGTCTCAGGTCAGACGTCGCAGCCTACATAGCCTAAGCTCAA
CCAGACATCCACCACGACGCCTGCAAATGCCGCATTAGTATCC-CGTTGCACCAACGAGGTTAGCCCATTGACTCCTCGA
TCGCCTGCAA-----------GTACGAAGGATCGAAGCGCGCGGGGATGGCGGCGGCAGAGGCGCCACGTCCGCGGTGCA
AGGGGAAGGGGGCCATCACCGCCGGCGAGCGGCGTCGCCGGGACGAAGAAGCGGAAGAGGGTGCTCCCGCCGCTGCTGCC
GCCGGGGACGGCCGTGGAGGTGCTTCGCAACGGGGCCTGGGTGGGCGGCGGCACGGTGACCATCCGCAACGGCCGCACCT
ACATGGTCCGCCTCCTCGACGGCATGACCGTCCTCATGAGCCGGGGGAGGGTCAGGCCGGCGGCGACGGAGTAGAGCGGT
GCTTGTCTCTGTCCATCGACCGCACCATACTTGCACGGAC-TTCTTTGCTTGCAAGCCC---AGTACTTGATTCTTTTCA
TGCCTTTGCAAGAAACGTGTAG---TAGCATACGTGATGGCGTCTCCGATCCTTTCAAG----TTCCATTTCACTGTGTT
GTATACGTCAGCTGCTTAACTGGGATTGTTGCCTTTATAGCAATTCTCGTAACCCC
>chr1A_1
TCCTAGATGACCACCAATGGTTCATGGTAACTAAAACGTAATTACTGACAGCATATATGCAAAGGCAATAATTACTTCCA
TCTAAAAGATATGGACCGACCTTTCTTTTTAGATGTCTAGCAATCATGTATGTATGTTGCAAAGGAAGG-----------
-------------AGCACAGTAAGCATGCCTAAAGCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACACATCGGTTTCGCCTCTTATCCCCCCTCTCGTCCTCTTGAAGTCTCGAATGACGATCGTGGTGTCCATCCGAACAC
AATATACCTAAAGTCATTGATCTCAAAACAACTATTTCTTATTCCATTGTTCAGTCGTTCACAAAATAGTTAGCCTATAA
GTGAGGGGAATTATGTGGAGTTTTCTAACTGGCTAGAGGCAATTATATAATTGCAATTAAAATTAATCAGCAAACATAAT
TGACGACGACATGAATACTTACTTAACATCTTCTATGAAAATTTTAAGCTGCTCAATTATGATGTGACTAT-----AAAA
AAACAACAGTGCAACAGTGGGGTACCGAGATTATTTAAAATTGCCCCGCCTGTCATC--------GCATCATTTGGAAAA
TAGAAAATTCCAGTGGCATACAAGATATGAAAGTTATCCCG---------------------------------------
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----------------------------------------------------------------------AGATATATGC
ATT-----------------------------------------------------------------------------
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-------------------------------------------------------------------------------G
GTTGCTACTTTTGCTTTTGC--------------------------------------------------AATGGTGGTC
TCTTCTTTCAAGGAGGAAAGC--AAAAATCTAAAACA--AAA------AAAAGCAGAGGAAGCAAAGCAAAAACCTCCTG
ACCCAGCAGTGAGCCACTGATCTTTCCCTCCTGCATTGCACCAAGTCCCCTAGCTGCAGCACTACACGATGACCACCGCG
GAGCCTCCCATTCCGCCGTCGCCGACCAGCTCTCGCGACAGGGTGCGGCGACGGCAGTGCGCGCTCGCGCTGGCTGCCGC
GGCCGCCGCCTGCCTGGCGCCGGTGGCCGTGCTCCTGGCGGTGCTCGTCCTCGCGCCGTCGCTCCTCCCACGGCTCCTCC
TCCGGCCGCACCACGTCGCCCCCTACGTTTCCTCCGCCGAGCTCCGCCTCCTCGCCTTCGACCCCGCCGCCTCCGCCGTC
TCCTACAACCTCTCCGCCACGCTCCGGTTCGACAGCCCGTGCCTCTACTGCACATGGCGGTACACGGAGCTCAAGGCCAC
GCCGTCCTACGCCGGGCAGCAGCTGGCCGCCGCCGCGACGCTTCGGGAGCTCACGCAGCGGAGGGGCAGCGACGCGCGCG
ACGTGGCGTGGGCGGGGACGCAGAAAGTGCCGCCAGGCCGGCGCGCCCGCACCGTGGCCACGGCGCTCGCGCGGGAGGAG
GCTGAGGGGCGGCTCAGCGTCAAGGTGGCGGTGAGCACCGTGCAGAACGGCGCGCGGAGCGACTTCGCGTGCGTGCTGAG
CTTCCCTGCAGTGTCCGTGCCCCGGCGCAAAGGGACCGGGAGCCCCGCCGCCGCGGTGTTCCGCGGCGGCAGGTGCGTCG
ACGCCGTGCCCGGCGAGATCTAGACGCCGGGCGGTCGGCCCGCTGGTGC--ATGGCTTGGCGAGCGATCGATGTCGGCTT
TGGCAGTCTACTTGTTCTCATGGCGATGGTGGAACGCCGGTGCTCG----------------------------------
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-----------CCACGTACGGCGCCACGCCACAATGGCTCCTTCCTTGACGTGCATTAATCGTGTGTTCATTATCATCAC
GTGGCGTGGTATGTTCTTGTTCGGTTTTAACCATCATCGTGACCTGGAAAACTGCGACCAGTGGCCGTACAGTACA-ACC
TTGCCTGCATTTCACGCCAAAATGAGCTTTGTGTGCGTGCCTCGGCAAGCCGGTAATTCGATCCCCACTACGCACGTTAC
GTATCGGCCGCGGCGCACGATCCTATTCCGCAACCTCCGGTCTCAGGTCAGACGTCGCAGCCTACATAGCCTAAGCT---
-----CATCCACCACGACGCCTGCACACGCCGCATTACAAATCTCGTTGCACCAACGTGGTTAGCCCATTGACTCCTCCA
TCGCCTGCAGCCCTGCACGTACGTAC-------------------GATGGCGGCCGCGGAGGCGCGACGTCCGCCGTCGA
AGGGGAA-GGCGCCATCACCGCCGGCGAGCGTCGTCGCCGAGACGAAGAAGCGGAAGAGGGTGCTCCCGCCGCTGCTGCC
GCCCGGGACGGCCGTGGAGGTGCTCCGCAACGGGGCCTGGGTGGGCGGCGGCACGGTGACCATCCGCAACGGCCGCACCT
ACATGGTCCGCCTCCTCGACGGCATGACCGTCCTCATGAGCCGGGGGAAGGTCAGGCCGGCGGCGACGGAGTAGAGCGGT
GCTTGTC-----CCATCGACCGCACCTTACTTGCAGCGCTTTTCTTTGCTTGCAAGCCTACTAGTTCTTGATTCTTTTCA
TGCCTTTGAAAGAAACGTATAGTACTAGCATATGTGATGGCGTCTCTTAATTCTTTGAAAAGATTGCATTTCACT-----
--------------------------------------------------------
>chr1B_562
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------------------------------------------------------------------------------AA
GTGAGGGAAATTATGTGGAGTTTTCTACCTGGCTAGAGGCAATTATATAATTGCAATTAAAATTAATCAGCAAACATAAT
TGACGACGACATGAATACTTACTTAGCCTCTTCTATGGAAATTTTAAGCTGCTCAATTATAATGTCACTATGAAAAAAAC
AA----CAATGCAGCAGTGGGGTACCCAGATTATTTAAAATTGCCCCGCTTGTCATCGACACAGTGCGTCATTTGGAAAA
TAGAAAATTCCAGTGTCATATAAGAAATGAAATTTAATATCGCGATGCTGTCAAGGCAAGTGTGGCGCCTGATCCAGAAC
CCTGACAGTCTTTGTGCTCGTATTCTTCGAGCTAAGTACTACCCTGACGGCGACATATTTAAGGCGCAGGCTACAGAGGG
AATCTCATATTCTTGGCGCAGTTTGCTTCATGGATTGCAACTGGTGGAGCAAGGATATATTTGGCGGATTGGTGATGGGC
ATAATGTGAAGATCTGGGAGGATCCATGGCTGCCGCGGGCTTGGACTCGGCGTGTTCAGATAATGAGAGGAGGGAACCTG
CTGGAGCGAGTGCACAAGTTAATTGATCCGGCCCCAGGGCGTTGGGATGAGCAGATGATTACTGACACTTTTTGCCAAGA
GGATGCCCGCTTAATTCTTGAAATCCCATTACGTGATGGTATGAATGACTTTATCTCATGGCATTTTGATAAGAATGGTA
TTCATTCAGTCAAGCAGGCTTATAAGCTTCATGTCCAGCTTGAGAAGTTGATGAATGGAGCTAGCTCCAGTAACAATTCC
GGTAATCTGGTTGCATGTGATAATACGCGCTGGAAGCGCATTTGGAAGCTGCCTTGCCTGAATAAAGTCAGGATGTTTGC
ATGGCGAGTGGCACACGACTCTCTGGCGGTGAGGGCAAACTTGGTGAGGCGTGGAATGCAAATAGAGGACACAAAGTGCC
CAATGTGTGATAGCTCAATTGAGGAAGGGGGGCACCTTTTTATCAGGTGTAAGGAGGTCAAGGAAGTGTGGCGAATGCTG
GGCTTAGAGGAGGTGAGAACAAAGTTGGAGAAGTGTTCATCTGTGTATGCAGCTTTGGATGCCCTATGGACGATACACGT
AGACAAAGTTGCCATGGTATTCAATTTCTGGTGGCACTGGTGGAATAATCGGAACAGAGTTTGGAAAGGTAAAACTAGAT
GGCAGCCAAATGAAATTATGTTTCAGACTTTTGCCACCAATGCTGAATACCTGTCGGTCGCGGTGAAGACTGAAAAAGGA
AGTAATAAGAATGATTCTCAATGGAGACCACCAGAGGAGGGTATACTGAAGATCAATATTGATGGTGCTTTCACTCCGGG
TGGTGAAGATGGTGCGTGGGGTGTGATTGTGAGAGATTACAGGGGTGATGTGATAGCTTGTAAAGCAGGAAGATCCATGC
ATGTATCTGACGCATTTGCAGCTGAACTTCAGGCGATGGTTCATGCTCTGGACTTGGCAACTGAACTAGGAGCTATCCGC
ATAATTGTAGAAACTGACTCACAACTCCTTGCAGCTGCGGTCAATAGCACAGATAAGGATTTCTCCAGATATGCCACGAT
ACTAGAAGATGTAAAGATGCAAAAGAGACTATGGTTTTCCAAATGTGCCATTCAGGTTTGTCGTAGGGAGGCTAATAATG
CTGCACACCATCTTGCTAAGTTTGGTTACAATTGTACTGAAAATGAAGCCTTCCAGTGGGAGGACTGTGCACCTGACCAG
GTTGCATCTTATGTAATGGGCGACGCGCCCAAACTGTCTGCGTAATAAAGCTTTGTTTTAATCAAAAAAAAATGGTGGTC
TCTTCTTTCAAGGAGAAAAGGCGAAAAATCTAAAACAAAAAATAAAACAAAAGCAGAGGAAGCAAAGCAAAAACCTCCTG
ACCCAGCAGTGAGCCACTGATCTTTCCTTCCTGCATTGCACCAAGTCCCCTGGCTGCAGCACTACACGATGACCACCGCC
GAGCCTCCCATTCCGCCGTCGCCGACCAGCCCTCGCGACAGGGTGCGGCGACGGCAGTGCGCGCTCGCGCTGGCTGCCGC
GGCCGCCGCCTGCCTGGCGCCGGTGGCCGTGCTCCTGGCGGTGCTCGTCCTCGCGCCCTCGCTCCTCCCACGGCTGCTCC
TCCGGCCTCACCACGTCGTCCCCTACGTTTCCTCCGCCGAGCTCCGCCTCCTCGCCTTTGACCCCGCCGCATCCGCCGTC
TCCTACAACCTCTCCGCCACGCTCAGGTTCGACAGCCCGTGCCTCTACTGCACATGGCGGTACACGGAGCTCAAAGCCAC
GCCGTCCTACGCCGGGCAGCAGCTGGGCGCCGGCGCGGAGCTGCCGGAGCTCACGCAGCGGAGGGGCAGCGACGCGCGCG
ACATTGCGTGGGCGGGGGCGCAGAAAGTGCCGCCCGGCCGGCGCGCCCGCGCAGTTGCCGCGGCGCTCGCGCGGGAGGAG
GCCGAGGGGCGGCTCAGCGTCAAGGTGGCGGTGAGCACCGTGCAGAACGGCGCGCGGAGCGACTTCGCGTGCGTGCTGAG
CTTCCCTGCTGTGTCTGCGCCGCGGCGCGGAGGGACCGGGAGCCCCGCCGCCGCGGTGTTCGACGGCGGCAGGTGCGTCG
ACGCTGTGCCTGGCGAGATCTAGGCGCCGGTCGATCGGCCCGCTGGTGCT--TGGCTTGGCGAGCGATCGATGTTGGCTT
TGGCAGTTCACTTGTTCTCATGGCGATGGGGGAGCGCCGGTGCTTTTTTTTTTTTGAGAATTCTTTGCATTCAGATCACG
AAACAATACAAAATAGTTGAACCTTACAAGCACACTGAAACGCAAACACAAAGGACTATAAACACCTAGAATACCCTAAG
ACAACCATAACATAAGAAGATCTCCGAAGCTCTGTGTCATCATCCCTGAATCTTGAGGGAAGACCCCTGCAGCAAAACGA
TATGCAACCAGGCGCAAGCAGGTCATCATCTTCAACCACGGAACAATTGCCACCACTCTGCTTCCTCCTTTTTTGACACC
AGCGCTGAGAGGGCATGGACATCAATCCAACACACCTGCAACAGCCGTCGCCATCTTTGGCTTTGAGTACCGCGAAAAAT
GTCCCTTCCGGAAGGAAGAGAACTCGAGTCATCCGACCGGTCCAGCACCGCGGCCGGGCCATTCGCCCGGGCAAAGCAGA
ATCTCCCTCTAGCATCAGCGTAGAGGAAGGAGAAGAACAACAGCAGCAAATCATACCGACAAGGAAGAAGAAGGGTCTTC
GTCTCCCTGCATCCATCGCCCATCTAAGGACCCAAACGGCCAGTGCCAATGGACCTCCAGTCACCATAGCCCGCGACCTC
GACGAGATCCGGGGATCCCCCACCCCGCTGGCTCCTAGACGAAGGCCAAAGCCTCGACTGACCGCGAACGGAGCCCGGAG
AAACTTATTCCAAAGCGACACCACCGCAACGGCCTCGGCAGCGTCACCCTCAACCCTAACCCTACCACACACACCTAGCG
GACAGACCCGAGGTTCCCCCTCCCTCCTGTGGCCGGAGCGGCCGACGGAGAGAGAGGGAACCGGCGGCGCCACCGGCAGC
GCGCAGGAAACCCACGTACGGCACCAGGCCACGATGGC----TCCTTGACGTGCATTAGTCGTGTGTTCATTATCATCAC
GTGGCGTGGTATGTTCTTGTTCGGTTTTTACCATCATCGTGACCTGGAAAACGGCGACCAGGGGCCGTACAGTACAGACC
TTGCCTGCATTTCACGCCAAAATGAGCTTTGTGTGCGTGCCTCGGCAAGCCGGTAATCGGATTCCCACTACGCACGTTAC
GTATCGGCCGGGGCGCACGATCCGACTCCGCGACCTCCGGTCTCAGGTCAGACGTCGCACCCTACATAGCCTAAGCT---
-----CATCCACCACGACGCCTGCAAACGCCGCATTAGTAC-CTCGTTGCACCAACGTGGTTAGCTCATA-ACTCCTCGA
TAGCCTGCACATACGTACTACGTACTAAGGATCGAAGCGCGCGGGGATGGCGACAGCGGAGGCGCGACGTCCGCCGTCTA
AGGGGAA-GGGGCCATCACCGCCGGCGAGCGGCGTCGCCGGGACGAAGAAGCGGAAGAGGGTGCTCCCGCCGCTGCTGCC
GCCCGGGACGGCCGTGGAGGTGCTTCGCAACGGGGCCTGGGTGGGCGGCGGCACGGTGACCATCCGCAACGGCCGCACCT
ACATGGTCCGCCTCCCCGACGGCATGACCGTGCTCATGAGCCGGGGGAGGGTCAGGCCGGCGGCGACGGAGTAGAGCGGT
GCTTGCCTCTGTCCATCGACTGCACCATACTTGCAGGGAC-TTCTTTGCTTGCAAGCCCAGTAGTTCTTGATTCTTTTCA
TGCCTTTGCAAGAAACGTTTAG---TAGCATATGTGATGGCGTCTCCGATCCTTTCAAC----TTTCA------------
--------------------------------------------------------
>SNPs
------------S---S-------------------SS--------SS------------S----S--------------
-------------------------------------------S----S-------------SS-S--SSSSSSSSSSSS
SSSSSSSSSSSSS------S--------S------SSSSS----------------------------------------
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--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S-------------------------------------------------------------------------------
---------------------------------------------S------S---------------------------
------S---------------------S---------------------------------------------------
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-----------------------------S-----S--------------------------------------------
-----S-----------------------------------------S----S---------S-----------------
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---------------S----------------------------------------------------------------
----------------------S---------------------------------------------------------
-----------------------------------------------------S-------------------S-----S
---S--------------------------S-----------S----------------------------------S--
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---------------S-------------S--------------------------------------------------
------------------S--------S---------------------S------------------------------
------------------------S------------------------SS-----------------------------
----S-----S---------------------------------------------------------------------
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---------------------------------S--------------------------------------S-------
-----------------------------------------S------------S-------------------------
-------S------------------------------S-----------------------------------------
-----------------------------------------------------------------------------SSS
SSSSS----------------------S------------SS---------------S----------------------
---------S---------------S----------------------------S--S-------S--------S--SS-
-------S------------------------------------------------------------------------
---S----------------------------------------------------------------------------
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-----------------------------------S-----------------------------S--------------
------------------S-------------S-------------------------S------S---------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2608
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----------------------------TCCTGCATTGCACCAAGTCA--------------------------------
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>reverse_4558
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-----------------------------------------------------------------------------CAA
CCAGACATCCACCACGA---------------------------------------------------------------
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