Multiple sequence alignment - TraesCS1D01G091600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G091600 chr1D 100.000 4012 0 0 1 4012 77837634 77841645 0.000000e+00 7409
1 TraesCS1D01G091600 chr1D 96.759 216 4 3 3798 4012 474300997 474300784 1.370000e-94 357
2 TraesCS1D01G091600 chr1A 95.462 1785 77 4 2021 3803 108923261 108925043 0.000000e+00 2844
3 TraesCS1D01G091600 chr1A 90.124 1691 79 43 277 1932 108921616 108923253 0.000000e+00 2117
4 TraesCS1D01G091600 chr1A 88.158 228 13 8 1 227 108918693 108918907 3.980000e-65 259
5 TraesCS1D01G091600 chr1A 100.000 84 0 0 1930 2013 253727137 253727054 5.370000e-34 156
6 TraesCS1D01G091600 chr1A 97.619 84 2 0 1930 2013 304995761 304995678 1.160000e-30 145
7 TraesCS1D01G091600 chr1B 91.178 1961 101 29 3 1932 121403336 121405255 0.000000e+00 2597
8 TraesCS1D01G091600 chr1B 93.711 1113 43 12 2025 3125 121405262 121406359 0.000000e+00 1642
9 TraesCS1D01G091600 chr1B 96.983 663 18 1 3141 3803 121406431 121407091 0.000000e+00 1112
10 TraesCS1D01G091600 chr1B 82.906 117 20 0 2298 2414 226357785 226357669 5.480000e-19 106
11 TraesCS1D01G091600 chr7D 97.183 213 4 2 3801 4012 48268193 48268404 3.810000e-95 359
12 TraesCS1D01G091600 chr7D 97.143 210 4 2 3804 4012 13886855 13887063 1.770000e-93 353
13 TraesCS1D01G091600 chr7D 77.165 254 51 7 1188 1436 115049858 115049607 1.500000e-29 141
14 TraesCS1D01G091600 chr2D 97.156 211 6 0 3802 4012 468951158 468951368 1.370000e-94 357
15 TraesCS1D01G091600 chr2D 96.209 211 5 3 3803 4011 617220289 617220080 3.840000e-90 342
16 TraesCS1D01G091600 chr5D 96.682 211 4 3 3803 4012 515271358 515271566 8.250000e-92 348
17 TraesCS1D01G091600 chr5D 77.885 520 97 16 1169 1680 326118246 326118755 1.400000e-79 307
18 TraesCS1D01G091600 chr5D 82.222 270 45 3 1171 1438 325422829 325423097 3.120000e-56 230
19 TraesCS1D01G091600 chr6D 95.794 214 5 3 3800 4012 19501267 19501477 3.840000e-90 342
20 TraesCS1D01G091600 chrUn 94.884 215 9 2 3798 4010 228437142 228437356 6.420000e-88 335
21 TraesCS1D01G091600 chr4B 94.495 218 10 2 3795 4011 481521347 481521131 6.420000e-88 335
22 TraesCS1D01G091600 chr5B 82.836 268 44 2 1169 1435 377978343 377978609 5.180000e-59 239
23 TraesCS1D01G091600 chr5B 82.657 271 46 1 1169 1438 378510703 378510973 5.180000e-59 239
24 TraesCS1D01G091600 chr5A 83.012 259 42 2 1178 1435 430508305 430508048 2.410000e-57 233
25 TraesCS1D01G091600 chr5A 98.810 84 1 0 1930 2013 321329776 321329859 2.500000e-32 150
26 TraesCS1D01G091600 chr5A 100.000 79 0 0 1935 2013 361712375 361712453 3.230000e-31 147
27 TraesCS1D01G091600 chr4D 78.445 283 55 6 1539 1818 283882645 283882366 3.190000e-41 180
28 TraesCS1D01G091600 chr7A 100.000 84 0 0 1930 2013 109233394 109233477 5.370000e-34 156
29 TraesCS1D01G091600 chr7A 100.000 83 0 0 1931 2013 518028279 518028197 1.930000e-33 154
30 TraesCS1D01G091600 chr7A 77.165 254 51 7 1188 1436 119704115 119703864 1.500000e-29 141
31 TraesCS1D01G091600 chr6B 100.000 80 0 0 1932 2011 641158754 641158833 8.980000e-32 148
32 TraesCS1D01G091600 chr3B 98.795 83 1 0 1931 2013 759808658 759808740 8.980000e-32 148
33 TraesCS1D01G091600 chr2A 98.780 82 0 1 1933 2014 322541037 322541117 1.160000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G091600 chr1D 77837634 77841645 4011 False 7409.000000 7409 100.000000 1 4012 1 chr1D.!!$F1 4011
1 TraesCS1D01G091600 chr1A 108918693 108925043 6350 False 1740.000000 2844 91.248000 1 3803 3 chr1A.!!$F1 3802
2 TraesCS1D01G091600 chr1B 121403336 121407091 3755 False 1783.666667 2597 93.957333 3 3803 3 chr1B.!!$F1 3800
3 TraesCS1D01G091600 chr5D 326118246 326118755 509 False 307.000000 307 77.885000 1169 1680 1 chr5D.!!$F2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 3033 0.178953 AACATTCAACTGGCTGCCCT 60.179 50.0 17.53 0.0 0.00 5.19 F
1480 4203 0.179086 TGCACGTACGGATGCATGAT 60.179 50.0 24.48 0.0 46.63 2.45 F
2615 5350 0.032017 AATACTCGTCTCAGGGGGCT 60.032 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 4733 0.038251 GCCAGCAAACCCTAGCAAAC 60.038 55.0 0.00 0.0 0.00 2.93 R
2912 5647 0.031857 CCCGTTGCAGCAAAATGTCA 59.968 50.0 10.11 0.0 0.00 3.58 R
3891 6684 0.037232 CCCGAACTCGCTTTTCCTCT 60.037 55.0 0.00 0.0 38.18 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.032609 GTCGATCATCTGGCCGCG 61.033 66.667 0.00 0.00 0.00 6.46
67 68 2.857748 TCTAGCGCACGTGTCATTATTG 59.142 45.455 18.38 0.93 0.00 1.90
75 76 4.094887 GCACGTGTCATTATTGATGGAAGT 59.905 41.667 18.38 0.00 36.37 3.01
77 78 6.510157 GCACGTGTCATTATTGATGGAAGTAG 60.510 42.308 18.38 0.00 36.37 2.57
80 81 7.921214 ACGTGTCATTATTGATGGAAGTAGTAG 59.079 37.037 0.00 0.00 36.37 2.57
81 82 7.921214 CGTGTCATTATTGATGGAAGTAGTAGT 59.079 37.037 0.00 0.00 36.37 2.73
90 91 8.589701 TTGATGGAAGTAGTAGTATCAACAGA 57.410 34.615 0.00 0.00 31.72 3.41
91 92 8.589701 TGATGGAAGTAGTAGTATCAACAGAA 57.410 34.615 0.00 0.00 0.00 3.02
92 93 8.687242 TGATGGAAGTAGTAGTATCAACAGAAG 58.313 37.037 0.00 0.00 0.00 2.85
93 94 6.864342 TGGAAGTAGTAGTATCAACAGAAGC 58.136 40.000 0.00 0.00 0.00 3.86
94 95 6.127423 TGGAAGTAGTAGTATCAACAGAAGCC 60.127 42.308 0.00 0.00 0.00 4.35
95 96 6.127423 GGAAGTAGTAGTATCAACAGAAGCCA 60.127 42.308 0.00 0.00 0.00 4.75
99 100 5.971763 AGTAGTATCAACAGAAGCCAGAAG 58.028 41.667 0.00 0.00 0.00 2.85
125 129 0.247145 CGCATAAACACGAGAACCGC 60.247 55.000 0.00 0.00 43.32 5.68
251 266 1.669115 CAGCTTCCACTGTCACCCG 60.669 63.158 0.00 0.00 32.78 5.28
339 3007 4.819630 AGAGGCAAGTATCTTCTCTCGTAG 59.180 45.833 0.00 0.00 29.81 3.51
361 3032 0.681175 AAACATTCAACTGGCTGCCC 59.319 50.000 17.53 0.00 0.00 5.36
362 3033 0.178953 AACATTCAACTGGCTGCCCT 60.179 50.000 17.53 0.00 0.00 5.19
363 3034 0.896940 ACATTCAACTGGCTGCCCTG 60.897 55.000 17.53 11.63 36.24 4.45
364 3035 1.980772 ATTCAACTGGCTGCCCTGC 60.981 57.895 17.53 0.00 33.65 4.85
382 3053 3.605013 CCGATCGGCATATGTTGGA 57.395 52.632 23.37 0.00 0.00 3.53
427 3098 3.243068 CCACTAGTTAATTTGCATCGCCC 60.243 47.826 0.00 0.00 0.00 6.13
451 3122 1.451927 TCAATCACGGCCAGCATCC 60.452 57.895 2.24 0.00 0.00 3.51
587 3268 2.105128 GTCTCCCGTGGCATCTCG 59.895 66.667 0.00 0.00 0.00 4.04
643 3324 2.673368 GGAAGGTGTGAATAGTCAAGCG 59.327 50.000 0.00 0.00 34.87 4.68
661 3343 3.691342 CGGGGAGCTCAACGACCA 61.691 66.667 20.50 0.00 0.00 4.02
675 3357 2.029844 GACCAACTCGTCTGCTGCC 61.030 63.158 0.00 0.00 0.00 4.85
676 3358 2.345244 CCAACTCGTCTGCTGCCT 59.655 61.111 0.00 0.00 0.00 4.75
677 3359 1.302033 CCAACTCGTCTGCTGCCTT 60.302 57.895 0.00 0.00 0.00 4.35
678 3360 0.886490 CCAACTCGTCTGCTGCCTTT 60.886 55.000 0.00 0.00 0.00 3.11
679 3361 0.947244 CAACTCGTCTGCTGCCTTTT 59.053 50.000 0.00 0.00 0.00 2.27
680 3362 0.947244 AACTCGTCTGCTGCCTTTTG 59.053 50.000 0.00 0.00 0.00 2.44
757 3442 1.076412 TCAAGGCAAGCCAACACCA 60.076 52.632 14.40 0.00 38.92 4.17
795 3490 1.305219 CCCGTGCCCGCCATTATATG 61.305 60.000 0.00 0.00 0.00 1.78
850 3550 0.560688 GTCTCTCCTCCCCCATCTCT 59.439 60.000 0.00 0.00 0.00 3.10
864 3564 2.843113 CCATCTCTTCTTCAACTCCCCT 59.157 50.000 0.00 0.00 0.00 4.79
878 3578 3.706373 CCCTGACCCTCACACCGG 61.706 72.222 0.00 0.00 0.00 5.28
881 3581 1.553690 CCTGACCCTCACACCGGAAT 61.554 60.000 9.46 0.00 0.00 3.01
902 3602 2.575532 TCACAGGCTCAACCAAGAAAG 58.424 47.619 0.00 0.00 43.14 2.62
909 3609 2.544486 GCTCAACCAAGAAAGCAACCAG 60.544 50.000 0.00 0.00 34.86 4.00
943 3643 0.320374 ATCGTTGCCAGTTCTTCCGA 59.680 50.000 0.00 0.00 0.00 4.55
944 3644 0.320374 TCGTTGCCAGTTCTTCCGAT 59.680 50.000 0.00 0.00 0.00 4.18
1022 3727 1.597854 CTTCAGCACAGCCGTGGAA 60.598 57.895 1.54 0.00 43.81 3.53
1046 3751 3.482783 GTTCTGCTGCGTCGGAGC 61.483 66.667 29.31 29.31 36.95 4.70
1259 3979 1.529152 TTCACCTACGCCGAGCTCAA 61.529 55.000 15.40 0.00 0.00 3.02
1480 4203 0.179086 TGCACGTACGGATGCATGAT 60.179 50.000 24.48 0.00 46.63 2.45
1527 4250 1.588861 GCGCCAACTAACTTCTCGATC 59.411 52.381 0.00 0.00 0.00 3.69
1528 4251 2.194271 CGCCAACTAACTTCTCGATCC 58.806 52.381 0.00 0.00 0.00 3.36
1534 4257 4.308899 ACTAACTTCTCGATCCGATTGG 57.691 45.455 0.00 0.00 34.61 3.16
1599 4322 2.743928 CTGGTGAAGCTGGTCGGC 60.744 66.667 0.00 0.00 0.00 5.54
1608 4331 0.757188 AGCTGGTCGGCTACTGCTAT 60.757 55.000 1.95 0.00 41.16 2.97
1638 4361 2.202690 CGGATGCTGGCGTACGAA 60.203 61.111 21.65 5.07 41.48 3.85
1848 4571 4.277476 TCAACTGCCCGATTAATCCAATT 58.723 39.130 9.87 0.00 0.00 2.32
1855 4578 6.484288 TGCCCGATTAATCCAATTATCTCAT 58.516 36.000 9.87 0.00 0.00 2.90
1932 4655 0.744281 CAAAGTCTGGCACCCGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
1933 4656 1.136110 CAAAGTCTGGCACCCGTTTTT 59.864 47.619 0.00 0.00 0.00 1.94
1957 4680 5.447478 TTTTGACGAAAAACAGCATTGTG 57.553 34.783 0.00 0.00 37.67 3.33
1958 4681 2.458951 TGACGAAAAACAGCATTGTGC 58.541 42.857 0.00 0.00 45.46 4.57
1959 4682 6.360305 TTTTGACGAAAAACAGCATTGTGCT 61.360 36.000 0.00 0.00 42.83 4.40
1974 4697 7.528481 GCATTGTGCTGATTTCATTCATTAA 57.472 32.000 0.00 0.00 40.96 1.40
1975 4698 7.618442 GCATTGTGCTGATTTCATTCATTAAG 58.382 34.615 0.00 0.00 40.96 1.85
1976 4699 7.490079 GCATTGTGCTGATTTCATTCATTAAGA 59.510 33.333 0.00 0.00 40.96 2.10
1977 4700 9.529325 CATTGTGCTGATTTCATTCATTAAGAT 57.471 29.630 0.00 0.00 0.00 2.40
1980 4703 8.843262 TGTGCTGATTTCATTCATTAAGATAGG 58.157 33.333 0.00 0.00 0.00 2.57
1981 4704 9.060347 GTGCTGATTTCATTCATTAAGATAGGA 57.940 33.333 0.00 0.00 0.00 2.94
1982 4705 9.803507 TGCTGATTTCATTCATTAAGATAGGAT 57.196 29.630 0.00 0.00 0.00 3.24
1989 4712 9.770097 TTCATTCATTAAGATAGGATGAGACAC 57.230 33.333 0.00 0.00 32.00 3.67
1990 4713 8.370940 TCATTCATTAAGATAGGATGAGACACC 58.629 37.037 0.00 0.00 32.00 4.16
1991 4714 6.672266 TCATTAAGATAGGATGAGACACCC 57.328 41.667 0.00 0.00 0.00 4.61
1992 4715 5.544176 TCATTAAGATAGGATGAGACACCCC 59.456 44.000 0.00 0.00 0.00 4.95
1993 4716 3.421394 AAGATAGGATGAGACACCCCA 57.579 47.619 0.00 0.00 0.00 4.96
1994 4717 3.421394 AGATAGGATGAGACACCCCAA 57.579 47.619 0.00 0.00 0.00 4.12
1995 4718 3.312890 AGATAGGATGAGACACCCCAAG 58.687 50.000 0.00 0.00 0.00 3.61
1996 4719 2.940514 TAGGATGAGACACCCCAAGA 57.059 50.000 0.00 0.00 0.00 3.02
1997 4720 2.044793 AGGATGAGACACCCCAAGAA 57.955 50.000 0.00 0.00 0.00 2.52
1998 4721 2.348472 AGGATGAGACACCCCAAGAAA 58.652 47.619 0.00 0.00 0.00 2.52
1999 4722 2.922283 AGGATGAGACACCCCAAGAAAT 59.078 45.455 0.00 0.00 0.00 2.17
2000 4723 4.111577 AGGATGAGACACCCCAAGAAATA 58.888 43.478 0.00 0.00 0.00 1.40
2001 4724 4.080299 AGGATGAGACACCCCAAGAAATAC 60.080 45.833 0.00 0.00 0.00 1.89
2002 4725 4.324254 GGATGAGACACCCCAAGAAATACA 60.324 45.833 0.00 0.00 0.00 2.29
2003 4726 4.286297 TGAGACACCCCAAGAAATACAG 57.714 45.455 0.00 0.00 0.00 2.74
2004 4727 3.009033 TGAGACACCCCAAGAAATACAGG 59.991 47.826 0.00 0.00 0.00 4.00
2005 4728 2.986728 AGACACCCCAAGAAATACAGGT 59.013 45.455 0.00 0.00 0.00 4.00
2006 4729 3.009143 AGACACCCCAAGAAATACAGGTC 59.991 47.826 0.00 0.00 0.00 3.85
2007 4730 2.714250 ACACCCCAAGAAATACAGGTCA 59.286 45.455 0.00 0.00 0.00 4.02
2008 4731 3.139397 ACACCCCAAGAAATACAGGTCAA 59.861 43.478 0.00 0.00 0.00 3.18
2009 4732 3.758554 CACCCCAAGAAATACAGGTCAAG 59.241 47.826 0.00 0.00 0.00 3.02
2010 4733 3.245264 ACCCCAAGAAATACAGGTCAAGG 60.245 47.826 0.00 0.00 0.00 3.61
2011 4734 3.245264 CCCCAAGAAATACAGGTCAAGGT 60.245 47.826 0.00 0.00 0.00 3.50
2012 4735 4.407365 CCCAAGAAATACAGGTCAAGGTT 58.593 43.478 0.00 0.00 0.00 3.50
2013 4736 4.832823 CCCAAGAAATACAGGTCAAGGTTT 59.167 41.667 0.00 0.00 0.00 3.27
2014 4737 5.278957 CCCAAGAAATACAGGTCAAGGTTTG 60.279 44.000 0.00 0.00 0.00 2.93
2015 4738 5.222631 CAAGAAATACAGGTCAAGGTTTGC 58.777 41.667 0.00 0.00 0.00 3.68
2016 4739 4.729868 AGAAATACAGGTCAAGGTTTGCT 58.270 39.130 0.00 0.00 0.00 3.91
2017 4740 5.876357 AGAAATACAGGTCAAGGTTTGCTA 58.124 37.500 0.00 0.00 0.00 3.49
2018 4741 5.940470 AGAAATACAGGTCAAGGTTTGCTAG 59.060 40.000 0.00 0.00 0.00 3.42
2019 4742 2.568623 ACAGGTCAAGGTTTGCTAGG 57.431 50.000 0.00 0.00 0.00 3.02
2219 4942 2.987149 AGCACGATAGAAACGTTGTCAG 59.013 45.455 0.00 0.00 42.07 3.51
2375 5110 1.135199 GTCACGACACGTATCATGGGT 60.135 52.381 0.00 0.00 38.32 4.51
2615 5350 0.032017 AATACTCGTCTCAGGGGGCT 60.032 55.000 0.00 0.00 0.00 5.19
2739 5474 3.347216 GACGACTACCTACAAGTGGGTA 58.653 50.000 13.78 13.78 43.02 3.69
2771 5506 5.717078 TCACAGTCGTAGTGGAAAATACT 57.283 39.130 0.00 0.00 37.58 2.12
2779 5514 9.367444 AGTCGTAGTGGAAAATACTGATAAAAG 57.633 33.333 0.00 0.00 0.00 2.27
2783 5518 7.073342 AGTGGAAAATACTGATAAAAGCGTC 57.927 36.000 0.00 0.00 0.00 5.19
2912 5647 2.066262 CCAAACTCAACGATACACGCT 58.934 47.619 0.00 0.00 46.94 5.07
2993 5728 3.006967 ACCGAAGAGCATCAAGTTACACT 59.993 43.478 0.00 0.00 37.82 3.55
3047 5782 3.577415 AGAGCTTAGTTAGGACCGTTGTT 59.423 43.478 0.00 0.00 0.00 2.83
3062 5797 6.127507 GGACCGTTGTTAAGGAGTAAGAGTAT 60.128 42.308 0.00 0.00 0.00 2.12
3104 5839 8.554490 ACATATTTGAACTAGATCCTGTAGGT 57.446 34.615 0.00 0.00 36.34 3.08
3234 6026 4.878971 GGGTGTAAATGCCAAAAGTTTTGT 59.121 37.500 23.29 9.88 0.00 2.83
3266 6058 8.504005 GTCCGGTTAATGTATTGGATTAATCAG 58.496 37.037 17.07 0.00 29.22 2.90
3538 6330 7.961326 AAGCCTTTATGGTATGAAAATCAGT 57.039 32.000 0.00 0.00 38.35 3.41
3768 6561 2.525105 TAGGGGCAAATCCACCTTTC 57.475 50.000 0.00 0.00 39.90 2.62
3792 6585 8.581253 TCTTCGATCATGTATCACCAGTATAT 57.419 34.615 0.00 0.00 33.87 0.86
3803 6596 8.924303 TGTATCACCAGTATATCTGCTTACTTT 58.076 33.333 0.00 0.00 42.38 2.66
3804 6597 9.765795 GTATCACCAGTATATCTGCTTACTTTT 57.234 33.333 0.00 0.00 42.38 2.27
3833 6626 3.399234 GGCTTTCCCCCTTTCCATT 57.601 52.632 0.00 0.00 0.00 3.16
3834 6627 2.543037 GGCTTTCCCCCTTTCCATTA 57.457 50.000 0.00 0.00 0.00 1.90
3835 6628 2.108168 GGCTTTCCCCCTTTCCATTAC 58.892 52.381 0.00 0.00 0.00 1.89
3836 6629 2.292257 GGCTTTCCCCCTTTCCATTACT 60.292 50.000 0.00 0.00 0.00 2.24
3837 6630 3.441101 GCTTTCCCCCTTTCCATTACTT 58.559 45.455 0.00 0.00 0.00 2.24
3838 6631 3.838317 GCTTTCCCCCTTTCCATTACTTT 59.162 43.478 0.00 0.00 0.00 2.66
3839 6632 4.081642 GCTTTCCCCCTTTCCATTACTTTC 60.082 45.833 0.00 0.00 0.00 2.62
3840 6633 4.750833 TTCCCCCTTTCCATTACTTTCA 57.249 40.909 0.00 0.00 0.00 2.69
3841 6634 4.965283 TCCCCCTTTCCATTACTTTCAT 57.035 40.909 0.00 0.00 0.00 2.57
3842 6635 6.410222 TTCCCCCTTTCCATTACTTTCATA 57.590 37.500 0.00 0.00 0.00 2.15
3843 6636 6.410222 TCCCCCTTTCCATTACTTTCATAA 57.590 37.500 0.00 0.00 0.00 1.90
3844 6637 6.192044 TCCCCCTTTCCATTACTTTCATAAC 58.808 40.000 0.00 0.00 0.00 1.89
3845 6638 5.067283 CCCCCTTTCCATTACTTTCATAACG 59.933 44.000 0.00 0.00 0.00 3.18
3846 6639 5.067283 CCCCTTTCCATTACTTTCATAACGG 59.933 44.000 0.00 0.00 0.00 4.44
3847 6640 5.883673 CCCTTTCCATTACTTTCATAACGGA 59.116 40.000 0.00 0.00 0.00 4.69
3848 6641 6.376018 CCCTTTCCATTACTTTCATAACGGAA 59.624 38.462 0.00 0.00 35.23 4.30
3849 6642 7.094118 CCCTTTCCATTACTTTCATAACGGAAA 60.094 37.037 5.87 5.87 41.63 3.13
3850 6643 8.466798 CCTTTCCATTACTTTCATAACGGAAAT 58.533 33.333 6.33 0.00 42.44 2.17
3853 6646 9.451002 TTCCATTACTTTCATAACGGAAATACA 57.549 29.630 0.00 0.00 34.37 2.29
3854 6647 9.104965 TCCATTACTTTCATAACGGAAATACAG 57.895 33.333 0.00 0.00 36.29 2.74
3855 6648 9.104965 CCATTACTTTCATAACGGAAATACAGA 57.895 33.333 0.00 0.00 36.29 3.41
3857 6650 9.886132 ATTACTTTCATAACGGAAATACAGAGT 57.114 29.630 0.00 0.00 36.29 3.24
3858 6651 7.829378 ACTTTCATAACGGAAATACAGAGTC 57.171 36.000 0.00 0.00 36.29 3.36
3859 6652 7.612677 ACTTTCATAACGGAAATACAGAGTCT 58.387 34.615 0.00 0.00 36.29 3.24
3860 6653 7.760340 ACTTTCATAACGGAAATACAGAGTCTC 59.240 37.037 0.00 0.00 36.29 3.36
3861 6654 6.769134 TCATAACGGAAATACAGAGTCTCA 57.231 37.500 1.94 0.00 0.00 3.27
3862 6655 6.796426 TCATAACGGAAATACAGAGTCTCAG 58.204 40.000 1.94 0.00 0.00 3.35
3863 6656 6.602009 TCATAACGGAAATACAGAGTCTCAGA 59.398 38.462 1.94 0.00 0.00 3.27
3864 6657 5.723672 AACGGAAATACAGAGTCTCAGAA 57.276 39.130 1.94 0.00 0.00 3.02
3865 6658 5.723672 ACGGAAATACAGAGTCTCAGAAA 57.276 39.130 1.94 0.00 0.00 2.52
3866 6659 5.471257 ACGGAAATACAGAGTCTCAGAAAC 58.529 41.667 1.94 0.00 0.00 2.78
3867 6660 5.244178 ACGGAAATACAGAGTCTCAGAAACT 59.756 40.000 1.94 0.00 0.00 2.66
3868 6661 5.574830 CGGAAATACAGAGTCTCAGAAACTG 59.425 44.000 1.94 7.55 35.14 3.16
3869 6662 6.570571 CGGAAATACAGAGTCTCAGAAACTGA 60.571 42.308 14.06 0.00 38.25 3.41
3870 6663 7.155328 GGAAATACAGAGTCTCAGAAACTGAA 58.845 38.462 14.06 0.00 40.18 3.02
3871 6664 7.657761 GGAAATACAGAGTCTCAGAAACTGAAA 59.342 37.037 14.06 4.74 40.18 2.69
3872 6665 7.954788 AATACAGAGTCTCAGAAACTGAAAC 57.045 36.000 14.06 0.00 40.18 2.78
3873 6666 4.698575 ACAGAGTCTCAGAAACTGAAACC 58.301 43.478 14.06 0.00 40.18 3.27
3874 6667 4.162320 ACAGAGTCTCAGAAACTGAAACCA 59.838 41.667 14.06 0.00 40.18 3.67
3875 6668 4.749099 CAGAGTCTCAGAAACTGAAACCAG 59.251 45.833 1.94 0.00 40.18 4.00
3876 6669 3.471680 AGTCTCAGAAACTGAAACCAGC 58.528 45.455 0.00 0.00 40.18 4.85
3877 6670 3.118261 AGTCTCAGAAACTGAAACCAGCA 60.118 43.478 0.00 0.00 40.18 4.41
3878 6671 3.627577 GTCTCAGAAACTGAAACCAGCAA 59.372 43.478 0.00 0.00 40.18 3.91
3879 6672 3.879295 TCTCAGAAACTGAAACCAGCAAG 59.121 43.478 0.00 0.00 40.18 4.01
3880 6673 2.951642 TCAGAAACTGAAACCAGCAAGG 59.048 45.455 0.00 0.00 37.57 3.61
3881 6674 1.683385 AGAAACTGAAACCAGCAAGGC 59.317 47.619 0.00 0.00 43.14 4.35
3882 6675 1.683385 GAAACTGAAACCAGCAAGGCT 59.317 47.619 0.00 0.00 43.14 4.58
3883 6676 2.656947 AACTGAAACCAGCAAGGCTA 57.343 45.000 0.00 0.00 43.14 3.93
3884 6677 2.191128 ACTGAAACCAGCAAGGCTAG 57.809 50.000 0.00 0.00 43.14 3.42
3885 6678 1.699634 ACTGAAACCAGCAAGGCTAGA 59.300 47.619 0.00 0.00 43.14 2.43
3886 6679 2.289945 ACTGAAACCAGCAAGGCTAGAG 60.290 50.000 0.00 0.00 43.14 2.43
3887 6680 1.977854 TGAAACCAGCAAGGCTAGAGA 59.022 47.619 0.00 0.00 43.14 3.10
3888 6681 2.027745 TGAAACCAGCAAGGCTAGAGAG 60.028 50.000 0.00 0.00 43.14 3.20
3889 6682 1.944177 AACCAGCAAGGCTAGAGAGA 58.056 50.000 0.00 0.00 43.14 3.10
3890 6683 1.944177 ACCAGCAAGGCTAGAGAGAA 58.056 50.000 0.00 0.00 43.14 2.87
3891 6684 2.260822 ACCAGCAAGGCTAGAGAGAAA 58.739 47.619 0.00 0.00 43.14 2.52
3892 6685 2.235898 ACCAGCAAGGCTAGAGAGAAAG 59.764 50.000 0.00 0.00 43.14 2.62
3893 6686 2.499289 CCAGCAAGGCTAGAGAGAAAGA 59.501 50.000 0.00 0.00 36.40 2.52
3894 6687 3.430651 CCAGCAAGGCTAGAGAGAAAGAG 60.431 52.174 0.00 0.00 36.40 2.85
3895 6688 2.765699 AGCAAGGCTAGAGAGAAAGAGG 59.234 50.000 0.00 0.00 36.99 3.69
3896 6689 2.763448 GCAAGGCTAGAGAGAAAGAGGA 59.237 50.000 0.00 0.00 0.00 3.71
3897 6690 3.196685 GCAAGGCTAGAGAGAAAGAGGAA 59.803 47.826 0.00 0.00 0.00 3.36
3898 6691 4.323104 GCAAGGCTAGAGAGAAAGAGGAAA 60.323 45.833 0.00 0.00 0.00 3.13
3899 6692 5.799213 CAAGGCTAGAGAGAAAGAGGAAAA 58.201 41.667 0.00 0.00 0.00 2.29
3900 6693 5.675684 AGGCTAGAGAGAAAGAGGAAAAG 57.324 43.478 0.00 0.00 0.00 2.27
3901 6694 4.081142 AGGCTAGAGAGAAAGAGGAAAAGC 60.081 45.833 0.00 0.00 0.00 3.51
3902 6695 3.862845 GCTAGAGAGAAAGAGGAAAAGCG 59.137 47.826 0.00 0.00 0.00 4.68
3903 6696 4.381079 GCTAGAGAGAAAGAGGAAAAGCGA 60.381 45.833 0.00 0.00 0.00 4.93
3904 6697 4.186856 AGAGAGAAAGAGGAAAAGCGAG 57.813 45.455 0.00 0.00 0.00 5.03
3905 6698 3.576550 AGAGAGAAAGAGGAAAAGCGAGT 59.423 43.478 0.00 0.00 0.00 4.18
3906 6699 4.039852 AGAGAGAAAGAGGAAAAGCGAGTT 59.960 41.667 0.00 0.00 0.00 3.01
3907 6700 4.311606 AGAGAAAGAGGAAAAGCGAGTTC 58.688 43.478 0.00 0.00 0.00 3.01
3908 6701 3.060602 AGAAAGAGGAAAAGCGAGTTCG 58.939 45.455 0.00 0.00 43.27 3.95
3909 6702 1.797025 AAGAGGAAAAGCGAGTTCGG 58.203 50.000 3.50 0.00 40.23 4.30
3910 6703 0.037232 AGAGGAAAAGCGAGTTCGGG 60.037 55.000 3.50 0.00 40.23 5.14
3911 6704 1.003718 AGGAAAAGCGAGTTCGGGG 60.004 57.895 3.50 0.00 40.23 5.73
3912 6705 2.687805 GGAAAAGCGAGTTCGGGGC 61.688 63.158 3.50 0.00 40.23 5.80
3913 6706 1.964373 GAAAAGCGAGTTCGGGGCA 60.964 57.895 3.50 0.00 40.23 5.36
3914 6707 1.512156 GAAAAGCGAGTTCGGGGCAA 61.512 55.000 3.50 0.00 40.23 4.52
3915 6708 1.792118 AAAAGCGAGTTCGGGGCAAC 61.792 55.000 3.50 0.00 40.23 4.17
3916 6709 2.951475 AAAGCGAGTTCGGGGCAACA 62.951 55.000 3.50 0.00 40.23 3.33
3917 6710 3.723348 GCGAGTTCGGGGCAACAC 61.723 66.667 3.50 0.00 40.23 3.32
3918 6711 3.047877 CGAGTTCGGGGCAACACC 61.048 66.667 0.00 0.00 35.43 4.16
3919 6712 2.112297 GAGTTCGGGGCAACACCA 59.888 61.111 0.00 0.00 42.05 4.17
3920 6713 1.966451 GAGTTCGGGGCAACACCAG 60.966 63.158 0.00 0.00 42.05 4.00
3921 6714 2.983592 GTTCGGGGCAACACCAGG 60.984 66.667 0.00 0.00 42.05 4.45
3922 6715 3.172106 TTCGGGGCAACACCAGGA 61.172 61.111 0.00 0.00 42.05 3.86
3923 6716 2.758207 TTCGGGGCAACACCAGGAA 61.758 57.895 0.00 0.00 42.05 3.36
3924 6717 2.203422 CGGGGCAACACCAGGAAA 60.203 61.111 0.00 0.00 42.05 3.13
3925 6718 2.561037 CGGGGCAACACCAGGAAAC 61.561 63.158 0.00 0.00 42.05 2.78
3926 6719 2.207229 GGGGCAACACCAGGAAACC 61.207 63.158 0.00 0.00 42.05 3.27
3927 6720 2.207229 GGGCAACACCAGGAAACCC 61.207 63.158 0.00 0.00 42.05 4.11
3928 6721 1.456705 GGCAACACCAGGAAACCCA 60.457 57.895 0.00 0.00 38.86 4.51
3929 6722 1.739667 GCAACACCAGGAAACCCAC 59.260 57.895 0.00 0.00 0.00 4.61
3930 6723 0.755327 GCAACACCAGGAAACCCACT 60.755 55.000 0.00 0.00 0.00 4.00
3931 6724 1.477923 GCAACACCAGGAAACCCACTA 60.478 52.381 0.00 0.00 0.00 2.74
3932 6725 2.817839 GCAACACCAGGAAACCCACTAT 60.818 50.000 0.00 0.00 0.00 2.12
3933 6726 3.081804 CAACACCAGGAAACCCACTATC 58.918 50.000 0.00 0.00 0.00 2.08
3934 6727 2.632537 ACACCAGGAAACCCACTATCT 58.367 47.619 0.00 0.00 0.00 1.98
3935 6728 2.305927 ACACCAGGAAACCCACTATCTG 59.694 50.000 0.00 0.00 0.00 2.90
3936 6729 1.282157 ACCAGGAAACCCACTATCTGC 59.718 52.381 0.00 0.00 0.00 4.26
3937 6730 1.656652 CAGGAAACCCACTATCTGCG 58.343 55.000 0.00 0.00 0.00 5.18
3938 6731 0.107654 AGGAAACCCACTATCTGCGC 60.108 55.000 0.00 0.00 0.00 6.09
3939 6732 1.095807 GGAAACCCACTATCTGCGCC 61.096 60.000 4.18 0.00 0.00 6.53
3940 6733 0.107654 GAAACCCACTATCTGCGCCT 60.108 55.000 4.18 0.00 0.00 5.52
3941 6734 0.392998 AAACCCACTATCTGCGCCTG 60.393 55.000 4.18 0.00 0.00 4.85
3942 6735 1.553690 AACCCACTATCTGCGCCTGT 61.554 55.000 4.18 0.00 0.00 4.00
3943 6736 1.227380 CCCACTATCTGCGCCTGTC 60.227 63.158 4.18 0.00 0.00 3.51
3944 6737 1.517361 CCACTATCTGCGCCTGTCA 59.483 57.895 4.18 0.00 0.00 3.58
3945 6738 0.105593 CCACTATCTGCGCCTGTCAT 59.894 55.000 4.18 0.00 0.00 3.06
3946 6739 1.495878 CACTATCTGCGCCTGTCATC 58.504 55.000 4.18 0.00 0.00 2.92
3947 6740 1.114627 ACTATCTGCGCCTGTCATCA 58.885 50.000 4.18 0.00 0.00 3.07
3948 6741 1.068281 ACTATCTGCGCCTGTCATCAG 59.932 52.381 4.18 0.00 41.01 2.90
3961 6754 4.572909 CTGTCATCAGGAACAACAGATCA 58.427 43.478 0.00 0.00 39.72 2.92
3962 6755 5.169992 TGTCATCAGGAACAACAGATCAT 57.830 39.130 0.00 0.00 0.00 2.45
3963 6756 4.939439 TGTCATCAGGAACAACAGATCATG 59.061 41.667 0.00 0.00 0.00 3.07
3964 6757 4.334759 GTCATCAGGAACAACAGATCATGG 59.665 45.833 0.00 0.00 0.00 3.66
3965 6758 3.354948 TCAGGAACAACAGATCATGGG 57.645 47.619 0.00 0.00 0.00 4.00
3966 6759 2.025981 TCAGGAACAACAGATCATGGGG 60.026 50.000 0.00 0.00 0.00 4.96
3967 6760 1.106285 GGAACAACAGATCATGGGGC 58.894 55.000 0.00 0.00 0.00 5.80
3968 6761 0.734889 GAACAACAGATCATGGGGCG 59.265 55.000 0.00 0.00 0.00 6.13
3969 6762 0.327924 AACAACAGATCATGGGGCGA 59.672 50.000 0.00 0.00 0.00 5.54
3970 6763 0.327924 ACAACAGATCATGGGGCGAA 59.672 50.000 0.00 0.00 0.00 4.70
3971 6764 1.271871 ACAACAGATCATGGGGCGAAA 60.272 47.619 0.00 0.00 0.00 3.46
3972 6765 1.818060 CAACAGATCATGGGGCGAAAA 59.182 47.619 0.00 0.00 0.00 2.29
3973 6766 1.463674 ACAGATCATGGGGCGAAAAC 58.536 50.000 0.00 0.00 0.00 2.43
3974 6767 0.740737 CAGATCATGGGGCGAAAACC 59.259 55.000 0.00 0.00 0.00 3.27
3975 6768 0.625849 AGATCATGGGGCGAAAACCT 59.374 50.000 0.00 0.00 0.00 3.50
3976 6769 0.740737 GATCATGGGGCGAAAACCTG 59.259 55.000 0.00 0.00 0.00 4.00
3977 6770 0.684153 ATCATGGGGCGAAAACCTGG 60.684 55.000 0.00 0.00 0.00 4.45
3978 6771 2.037208 ATGGGGCGAAAACCTGGG 59.963 61.111 0.00 0.00 0.00 4.45
3979 6772 2.852281 ATGGGGCGAAAACCTGGGT 61.852 57.895 0.00 0.00 0.00 4.51
3980 6773 2.989253 GGGGCGAAAACCTGGGTG 60.989 66.667 0.00 0.00 0.00 4.61
3981 6774 2.203437 GGGCGAAAACCTGGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
3982 6775 2.265904 GGGCGAAAACCTGGGTGTC 61.266 63.158 0.00 0.00 0.00 3.67
3983 6776 1.527380 GGCGAAAACCTGGGTGTCA 60.527 57.895 2.21 0.00 0.00 3.58
3984 6777 1.652563 GCGAAAACCTGGGTGTCAC 59.347 57.895 2.21 0.00 0.00 3.67
3985 6778 1.792118 GCGAAAACCTGGGTGTCACC 61.792 60.000 14.13 14.13 37.60 4.02
3994 6787 2.725641 GGTGTCACCCAAAACCGC 59.274 61.111 11.30 0.00 30.04 5.68
3995 6788 2.122167 GGTGTCACCCAAAACCGCA 61.122 57.895 11.30 0.00 30.04 5.69
3996 6789 1.065109 GTGTCACCCAAAACCGCAC 59.935 57.895 0.00 0.00 0.00 5.34
3997 6790 1.077357 TGTCACCCAAAACCGCACT 60.077 52.632 0.00 0.00 0.00 4.40
3998 6791 0.180642 TGTCACCCAAAACCGCACTA 59.819 50.000 0.00 0.00 0.00 2.74
3999 6792 0.589708 GTCACCCAAAACCGCACTAC 59.410 55.000 0.00 0.00 0.00 2.73
4000 6793 0.881159 TCACCCAAAACCGCACTACG 60.881 55.000 0.00 0.00 43.15 3.51
4011 6804 2.356794 GCACTACGAACACCTACGC 58.643 57.895 0.00 0.00 0.00 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.056304 GCTAGAGATCGGAGAATGTTGC 58.944 50.000 0.00 0.00 43.58 4.17
67 68 7.650104 GCTTCTGTTGATACTACTACTTCCATC 59.350 40.741 0.00 0.00 0.00 3.51
75 76 6.096987 CCTTCTGGCTTCTGTTGATACTACTA 59.903 42.308 0.00 0.00 0.00 1.82
77 78 5.105310 TCCTTCTGGCTTCTGTTGATACTAC 60.105 44.000 0.00 0.00 0.00 2.73
80 81 3.935828 GTCCTTCTGGCTTCTGTTGATAC 59.064 47.826 0.00 0.00 0.00 2.24
81 82 3.055094 GGTCCTTCTGGCTTCTGTTGATA 60.055 47.826 0.00 0.00 0.00 2.15
83 84 1.072331 GGTCCTTCTGGCTTCTGTTGA 59.928 52.381 0.00 0.00 0.00 3.18
84 85 1.202806 TGGTCCTTCTGGCTTCTGTTG 60.203 52.381 0.00 0.00 0.00 3.33
85 86 1.072965 CTGGTCCTTCTGGCTTCTGTT 59.927 52.381 0.00 0.00 0.00 3.16
86 87 0.689623 CTGGTCCTTCTGGCTTCTGT 59.310 55.000 0.00 0.00 0.00 3.41
87 88 0.676151 GCTGGTCCTTCTGGCTTCTG 60.676 60.000 0.00 0.00 0.00 3.02
88 89 1.682257 GCTGGTCCTTCTGGCTTCT 59.318 57.895 0.00 0.00 0.00 2.85
89 90 1.743252 CGCTGGTCCTTCTGGCTTC 60.743 63.158 0.00 0.00 0.00 3.86
90 91 2.348998 CGCTGGTCCTTCTGGCTT 59.651 61.111 0.00 0.00 0.00 4.35
91 92 4.400961 GCGCTGGTCCTTCTGGCT 62.401 66.667 0.00 0.00 0.00 4.75
92 93 2.593468 TATGCGCTGGTCCTTCTGGC 62.593 60.000 9.73 0.00 0.00 4.85
93 94 0.107703 TTATGCGCTGGTCCTTCTGG 60.108 55.000 9.73 0.00 0.00 3.86
94 95 1.398390 GTTTATGCGCTGGTCCTTCTG 59.602 52.381 9.73 0.00 0.00 3.02
95 96 1.003118 TGTTTATGCGCTGGTCCTTCT 59.997 47.619 9.73 0.00 0.00 2.85
99 100 1.017177 TCGTGTTTATGCGCTGGTCC 61.017 55.000 9.73 0.00 0.00 4.46
150 158 0.811219 TCCAGCAAATCTCGCATCGG 60.811 55.000 0.00 0.00 0.00 4.18
151 159 1.009078 TTCCAGCAAATCTCGCATCG 58.991 50.000 0.00 0.00 0.00 3.84
154 163 2.011947 CTGATTCCAGCAAATCTCGCA 58.988 47.619 7.66 0.00 36.73 5.10
216 225 2.890961 GGTAAGGAAGCCGCGAGC 60.891 66.667 8.23 9.98 44.25 5.03
264 279 0.178924 ATGGTTTTCAGCCAGGCCTT 60.179 50.000 8.22 0.00 39.65 4.35
266 281 0.686789 AAATGGTTTTCAGCCAGGCC 59.313 50.000 8.22 0.00 39.65 5.19
267 282 2.549064 AAAATGGTTTTCAGCCAGGC 57.451 45.000 1.84 1.84 39.65 4.85
268 283 4.871933 AGTAAAATGGTTTTCAGCCAGG 57.128 40.909 0.00 0.00 39.65 4.45
269 284 5.048083 TGCTAGTAAAATGGTTTTCAGCCAG 60.048 40.000 10.88 0.00 39.65 4.85
270 285 4.830046 TGCTAGTAAAATGGTTTTCAGCCA 59.170 37.500 10.88 0.00 40.68 4.75
271 286 5.183140 TCTGCTAGTAAAATGGTTTTCAGCC 59.817 40.000 10.88 0.00 34.13 4.85
339 3007 3.317150 GGCAGCCAGTTGAATGTTTTAC 58.683 45.455 6.55 0.00 0.00 2.01
364 3035 2.099141 ATCCAACATATGCCGATCGG 57.901 50.000 30.03 30.03 38.57 4.18
365 3036 4.024133 TGAAAATCCAACATATGCCGATCG 60.024 41.667 8.51 8.51 0.00 3.69
382 3053 1.812571 GATGTCAGGCCACGTGAAAAT 59.187 47.619 19.30 0.30 30.04 1.82
427 3098 1.431488 CTGGCCGTGATTGACCGATG 61.431 60.000 0.00 0.00 0.00 3.84
474 3155 0.949397 GGGTGGAAAACGTGAGGTTC 59.051 55.000 0.00 0.00 42.68 3.62
547 3228 1.599542 GTAATCTGGAATCTGGTGCGC 59.400 52.381 0.00 0.00 0.00 6.09
658 3340 2.031163 GGCAGCAGACGAGTTGGT 59.969 61.111 0.00 0.00 0.00 3.67
659 3341 0.886490 AAAGGCAGCAGACGAGTTGG 60.886 55.000 0.00 0.00 0.00 3.77
660 3342 0.947244 AAAAGGCAGCAGACGAGTTG 59.053 50.000 0.00 0.00 0.00 3.16
661 3343 0.947244 CAAAAGGCAGCAGACGAGTT 59.053 50.000 0.00 0.00 0.00 3.01
675 3357 4.026886 GGCAGTAGCGAACAAAAACAAAAG 60.027 41.667 0.00 0.00 43.41 2.27
676 3358 3.860536 GGCAGTAGCGAACAAAAACAAAA 59.139 39.130 0.00 0.00 43.41 2.44
677 3359 3.440228 GGCAGTAGCGAACAAAAACAAA 58.560 40.909 0.00 0.00 43.41 2.83
678 3360 2.223618 GGGCAGTAGCGAACAAAAACAA 60.224 45.455 0.00 0.00 43.41 2.83
679 3361 1.335496 GGGCAGTAGCGAACAAAAACA 59.665 47.619 0.00 0.00 43.41 2.83
680 3362 1.662026 CGGGCAGTAGCGAACAAAAAC 60.662 52.381 0.00 0.00 43.41 2.43
850 3550 1.064825 GGGTCAGGGGAGTTGAAGAA 58.935 55.000 0.00 0.00 0.00 2.52
864 3564 0.323629 GAATTCCGGTGTGAGGGTCA 59.676 55.000 0.00 0.00 0.00 4.02
878 3578 3.149196 TCTTGGTTGAGCCTGTGAATTC 58.851 45.455 0.00 0.00 38.35 2.17
881 3581 2.727123 TTCTTGGTTGAGCCTGTGAA 57.273 45.000 0.00 0.00 38.35 3.18
902 3602 0.390340 TCTCGATGCAGACTGGTTGC 60.390 55.000 4.26 0.00 41.86 4.17
964 3664 1.360551 CGGCGATCGAAGATGGACT 59.639 57.895 21.57 0.00 45.12 3.85
990 3695 1.003839 TGAAGCCATCGGTGACACC 60.004 57.895 15.13 15.13 34.05 4.16
1022 3727 1.468224 CGACGCAGCAGAACATAGACT 60.468 52.381 0.00 0.00 0.00 3.24
1056 3761 2.434359 GGCCCTTCTTCGTCCACG 60.434 66.667 0.00 0.00 41.45 4.94
1058 3763 2.920912 ACGGCCCTTCTTCGTCCA 60.921 61.111 0.00 0.00 30.89 4.02
1527 4250 2.753966 CGCCTGCAGAACCAATCGG 61.754 63.158 17.39 0.00 38.77 4.18
1528 4251 2.753966 CCGCCTGCAGAACCAATCG 61.754 63.158 17.39 6.49 0.00 3.34
1534 4257 2.743928 CACCTCCGCCTGCAGAAC 60.744 66.667 17.39 5.91 0.00 3.01
1599 4322 2.295909 GTGCTCCTCCTCATAGCAGTAG 59.704 54.545 0.00 0.00 46.26 2.57
1608 4331 2.060383 CATCCGGTGCTCCTCCTCA 61.060 63.158 0.00 0.00 0.00 3.86
1638 4361 2.440796 CTGCCGGTGCCCATGAAT 60.441 61.111 1.90 0.00 36.33 2.57
1855 4578 4.447290 TCGTGGTCAAGTCTCAAAAATGA 58.553 39.130 0.00 0.00 0.00 2.57
1934 4657 5.669848 GCACAATGCTGTTTTTCGTCAAAAA 60.670 36.000 0.00 0.00 40.96 1.94
1935 4658 4.201666 GCACAATGCTGTTTTTCGTCAAAA 60.202 37.500 0.00 0.00 40.96 2.44
1936 4659 3.305629 GCACAATGCTGTTTTTCGTCAAA 59.694 39.130 0.00 0.00 40.96 2.69
1937 4660 2.857152 GCACAATGCTGTTTTTCGTCAA 59.143 40.909 0.00 0.00 40.96 3.18
1950 4673 7.490079 TCTTAATGAATGAAATCAGCACAATGC 59.510 33.333 0.00 0.00 45.46 3.56
1951 4674 8.920509 TCTTAATGAATGAAATCAGCACAATG 57.079 30.769 0.00 0.00 31.76 2.82
1954 4677 8.843262 CCTATCTTAATGAATGAAATCAGCACA 58.157 33.333 0.00 0.00 31.76 4.57
1955 4678 9.060347 TCCTATCTTAATGAATGAAATCAGCAC 57.940 33.333 0.00 0.00 31.76 4.40
1956 4679 9.803507 ATCCTATCTTAATGAATGAAATCAGCA 57.196 29.630 0.00 0.00 31.76 4.41
1963 4686 9.770097 GTGTCTCATCCTATCTTAATGAATGAA 57.230 33.333 0.00 0.00 0.00 2.57
1964 4687 8.370940 GGTGTCTCATCCTATCTTAATGAATGA 58.629 37.037 0.00 0.00 0.00 2.57
1965 4688 7.605691 GGGTGTCTCATCCTATCTTAATGAATG 59.394 40.741 0.00 0.00 30.73 2.67
1966 4689 7.256835 GGGGTGTCTCATCCTATCTTAATGAAT 60.257 40.741 0.00 0.00 34.53 2.57
1967 4690 6.043243 GGGGTGTCTCATCCTATCTTAATGAA 59.957 42.308 0.00 0.00 34.53 2.57
1968 4691 5.544176 GGGGTGTCTCATCCTATCTTAATGA 59.456 44.000 0.00 0.00 34.53 2.57
1969 4692 5.307976 TGGGGTGTCTCATCCTATCTTAATG 59.692 44.000 0.00 0.00 34.53 1.90
1970 4693 5.476983 TGGGGTGTCTCATCCTATCTTAAT 58.523 41.667 0.00 0.00 34.53 1.40
1971 4694 4.890988 TGGGGTGTCTCATCCTATCTTAA 58.109 43.478 0.00 0.00 34.53 1.85
1972 4695 4.552883 TGGGGTGTCTCATCCTATCTTA 57.447 45.455 0.00 0.00 34.53 2.10
1973 4696 3.421394 TGGGGTGTCTCATCCTATCTT 57.579 47.619 0.00 0.00 34.53 2.40
1974 4697 3.051803 TCTTGGGGTGTCTCATCCTATCT 60.052 47.826 0.00 0.00 34.53 1.98
1975 4698 3.309296 TCTTGGGGTGTCTCATCCTATC 58.691 50.000 0.00 0.00 34.53 2.08
1976 4699 3.421394 TCTTGGGGTGTCTCATCCTAT 57.579 47.619 0.00 0.00 34.53 2.57
1977 4700 2.940514 TCTTGGGGTGTCTCATCCTA 57.059 50.000 0.00 0.00 34.53 2.94
1978 4701 2.044793 TTCTTGGGGTGTCTCATCCT 57.955 50.000 0.00 0.00 34.53 3.24
1979 4702 2.879103 TTTCTTGGGGTGTCTCATCC 57.121 50.000 0.00 0.00 33.05 3.51
1980 4703 4.843728 TGTATTTCTTGGGGTGTCTCATC 58.156 43.478 0.00 0.00 0.00 2.92
1981 4704 4.324563 CCTGTATTTCTTGGGGTGTCTCAT 60.325 45.833 0.00 0.00 0.00 2.90
1982 4705 3.009033 CCTGTATTTCTTGGGGTGTCTCA 59.991 47.826 0.00 0.00 0.00 3.27
1983 4706 3.009143 ACCTGTATTTCTTGGGGTGTCTC 59.991 47.826 0.00 0.00 0.00 3.36
1984 4707 2.986728 ACCTGTATTTCTTGGGGTGTCT 59.013 45.455 0.00 0.00 0.00 3.41
1985 4708 3.244770 TGACCTGTATTTCTTGGGGTGTC 60.245 47.826 0.00 0.00 0.00 3.67
1986 4709 2.714250 TGACCTGTATTTCTTGGGGTGT 59.286 45.455 0.00 0.00 0.00 4.16
1987 4710 3.433306 TGACCTGTATTTCTTGGGGTG 57.567 47.619 0.00 0.00 0.00 4.61
1988 4711 3.245264 CCTTGACCTGTATTTCTTGGGGT 60.245 47.826 0.00 0.00 0.00 4.95
1989 4712 3.245264 ACCTTGACCTGTATTTCTTGGGG 60.245 47.826 0.00 0.00 0.00 4.96
1990 4713 4.034285 ACCTTGACCTGTATTTCTTGGG 57.966 45.455 0.00 0.00 0.00 4.12
1991 4714 5.772521 CAAACCTTGACCTGTATTTCTTGG 58.227 41.667 0.00 0.00 0.00 3.61
1992 4715 5.010012 AGCAAACCTTGACCTGTATTTCTTG 59.990 40.000 0.00 0.00 0.00 3.02
1993 4716 5.140454 AGCAAACCTTGACCTGTATTTCTT 58.860 37.500 0.00 0.00 0.00 2.52
1994 4717 4.729868 AGCAAACCTTGACCTGTATTTCT 58.270 39.130 0.00 0.00 0.00 2.52
1995 4718 5.123979 CCTAGCAAACCTTGACCTGTATTTC 59.876 44.000 0.00 0.00 0.00 2.17
1996 4719 5.010282 CCTAGCAAACCTTGACCTGTATTT 58.990 41.667 0.00 0.00 0.00 1.40
1997 4720 4.567747 CCCTAGCAAACCTTGACCTGTATT 60.568 45.833 0.00 0.00 0.00 1.89
1998 4721 3.054361 CCCTAGCAAACCTTGACCTGTAT 60.054 47.826 0.00 0.00 0.00 2.29
1999 4722 2.304761 CCCTAGCAAACCTTGACCTGTA 59.695 50.000 0.00 0.00 0.00 2.74
2000 4723 1.073923 CCCTAGCAAACCTTGACCTGT 59.926 52.381 0.00 0.00 0.00 4.00
2001 4724 1.073923 ACCCTAGCAAACCTTGACCTG 59.926 52.381 0.00 0.00 0.00 4.00
2002 4725 1.446016 ACCCTAGCAAACCTTGACCT 58.554 50.000 0.00 0.00 0.00 3.85
2003 4726 2.287977 AACCCTAGCAAACCTTGACC 57.712 50.000 0.00 0.00 0.00 4.02
2004 4727 2.288213 GCAAACCCTAGCAAACCTTGAC 60.288 50.000 0.00 0.00 0.00 3.18
2005 4728 1.960689 GCAAACCCTAGCAAACCTTGA 59.039 47.619 0.00 0.00 0.00 3.02
2006 4729 1.963515 AGCAAACCCTAGCAAACCTTG 59.036 47.619 0.00 0.00 0.00 3.61
2007 4730 1.963515 CAGCAAACCCTAGCAAACCTT 59.036 47.619 0.00 0.00 0.00 3.50
2008 4731 1.620822 CAGCAAACCCTAGCAAACCT 58.379 50.000 0.00 0.00 0.00 3.50
2009 4732 0.603065 CCAGCAAACCCTAGCAAACC 59.397 55.000 0.00 0.00 0.00 3.27
2010 4733 0.038251 GCCAGCAAACCCTAGCAAAC 60.038 55.000 0.00 0.00 0.00 2.93
2011 4734 0.178964 AGCCAGCAAACCCTAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
2012 4735 0.178964 AAGCCAGCAAACCCTAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
2013 4736 0.609131 GAAGCCAGCAAACCCTAGCA 60.609 55.000 0.00 0.00 0.00 3.49
2014 4737 1.648467 CGAAGCCAGCAAACCCTAGC 61.648 60.000 0.00 0.00 0.00 3.42
2015 4738 2.471255 CGAAGCCAGCAAACCCTAG 58.529 57.895 0.00 0.00 0.00 3.02
2016 4739 4.713946 CGAAGCCAGCAAACCCTA 57.286 55.556 0.00 0.00 0.00 3.53
2219 4942 8.677148 ACAAACACAGATATATCCATGTAACC 57.323 34.615 16.09 0.00 0.00 2.85
2249 4984 7.396055 AGCAAATTAGGTTAGGCAAAGATAACA 59.604 33.333 0.00 0.00 34.28 2.41
2375 5110 1.542328 GGTGCGGCATATCCATGTGTA 60.542 52.381 5.72 0.00 34.40 2.90
2501 5236 2.982744 GCTTTGCTCCCTGGAACGC 61.983 63.158 0.00 0.00 34.58 4.84
2597 5332 0.757188 CAGCCCCCTGAGACGAGTAT 60.757 60.000 0.00 0.00 41.77 2.12
2615 5350 0.038251 CTACTCGTGCAGCCAGTTCA 60.038 55.000 0.00 0.00 0.00 3.18
2739 5474 2.218953 ACGACTGTGAACACGAATGT 57.781 45.000 0.00 0.00 42.46 2.71
2771 5506 4.151689 CCTTTGTTCTCGACGCTTTTATCA 59.848 41.667 0.00 0.00 0.00 2.15
2779 5514 1.398578 GCTTTCCTTTGTTCTCGACGC 60.399 52.381 0.00 0.00 0.00 5.19
2783 5518 6.241207 TCAATAAGCTTTCCTTTGTTCTCG 57.759 37.500 3.20 0.00 34.95 4.04
2912 5647 0.031857 CCCGTTGCAGCAAAATGTCA 59.968 50.000 10.11 0.00 0.00 3.58
2993 5728 1.281867 CACTATGCACCCCTTTCCTCA 59.718 52.381 0.00 0.00 0.00 3.86
3104 5839 2.963548 TCCGTGACTTGTGTTACACA 57.036 45.000 14.73 14.73 43.02 3.72
3209 6001 4.762289 AACTTTTGGCATTTACACCCAA 57.238 36.364 0.00 0.00 36.88 4.12
3234 6026 5.188163 TCCAATACATTAACCGGACTTCTCA 59.812 40.000 9.46 0.00 0.00 3.27
3759 6551 3.981071 ACATGATCGAAGAAAGGTGGA 57.019 42.857 0.00 0.00 43.58 4.02
3768 6561 8.681806 AGATATACTGGTGATACATGATCGAAG 58.318 37.037 0.00 0.88 37.38 3.79
3815 6608 2.108168 GTAATGGAAAGGGGGAAAGCC 58.892 52.381 0.00 0.00 0.00 4.35
3816 6609 3.101643 AGTAATGGAAAGGGGGAAAGC 57.898 47.619 0.00 0.00 0.00 3.51
3817 6610 5.083821 TGAAAGTAATGGAAAGGGGGAAAG 58.916 41.667 0.00 0.00 0.00 2.62
3818 6611 5.081315 TGAAAGTAATGGAAAGGGGGAAA 57.919 39.130 0.00 0.00 0.00 3.13
3819 6612 4.750833 TGAAAGTAATGGAAAGGGGGAA 57.249 40.909 0.00 0.00 0.00 3.97
3820 6613 4.965283 ATGAAAGTAATGGAAAGGGGGA 57.035 40.909 0.00 0.00 0.00 4.81
3821 6614 5.067283 CGTTATGAAAGTAATGGAAAGGGGG 59.933 44.000 0.00 0.00 0.00 5.40
3822 6615 5.067283 CCGTTATGAAAGTAATGGAAAGGGG 59.933 44.000 0.00 0.00 41.32 4.79
3823 6616 5.883673 TCCGTTATGAAAGTAATGGAAAGGG 59.116 40.000 5.39 0.00 43.39 3.95
3824 6617 6.995511 TCCGTTATGAAAGTAATGGAAAGG 57.004 37.500 5.39 0.00 43.39 3.11
3828 6621 9.104965 CTGTATTTCCGTTATGAAAGTAATGGA 57.895 33.333 4.01 4.01 44.20 3.41
3829 6622 9.104965 TCTGTATTTCCGTTATGAAAGTAATGG 57.895 33.333 0.00 0.00 40.54 3.16
3831 6624 9.886132 ACTCTGTATTTCCGTTATGAAAGTAAT 57.114 29.630 0.00 0.00 37.63 1.89
3832 6625 9.362539 GACTCTGTATTTCCGTTATGAAAGTAA 57.637 33.333 0.00 0.00 37.63 2.24
3833 6626 8.746530 AGACTCTGTATTTCCGTTATGAAAGTA 58.253 33.333 0.00 0.00 37.63 2.24
3834 6627 7.612677 AGACTCTGTATTTCCGTTATGAAAGT 58.387 34.615 0.00 0.00 37.63 2.66
3835 6628 7.759886 TGAGACTCTGTATTTCCGTTATGAAAG 59.240 37.037 3.68 0.00 37.63 2.62
3836 6629 7.608153 TGAGACTCTGTATTTCCGTTATGAAA 58.392 34.615 3.68 0.00 38.51 2.69
3837 6630 7.122204 TCTGAGACTCTGTATTTCCGTTATGAA 59.878 37.037 3.68 0.00 0.00 2.57
3838 6631 6.602009 TCTGAGACTCTGTATTTCCGTTATGA 59.398 38.462 3.68 0.00 0.00 2.15
3839 6632 6.796426 TCTGAGACTCTGTATTTCCGTTATG 58.204 40.000 3.68 0.00 0.00 1.90
3840 6633 7.406031 TTCTGAGACTCTGTATTTCCGTTAT 57.594 36.000 3.68 0.00 0.00 1.89
3841 6634 6.829229 TTCTGAGACTCTGTATTTCCGTTA 57.171 37.500 3.68 0.00 0.00 3.18
3842 6635 5.723672 TTCTGAGACTCTGTATTTCCGTT 57.276 39.130 3.68 0.00 0.00 4.44
3843 6636 5.244178 AGTTTCTGAGACTCTGTATTTCCGT 59.756 40.000 3.68 0.00 0.00 4.69
3844 6637 5.574830 CAGTTTCTGAGACTCTGTATTTCCG 59.425 44.000 3.68 0.00 32.44 4.30
3845 6638 6.692486 TCAGTTTCTGAGACTCTGTATTTCC 58.308 40.000 3.68 0.00 35.39 3.13
3846 6639 8.491950 GTTTCAGTTTCTGAGACTCTGTATTTC 58.508 37.037 3.68 0.00 41.75 2.17
3847 6640 7.442666 GGTTTCAGTTTCTGAGACTCTGTATTT 59.557 37.037 16.09 0.00 42.70 1.40
3848 6641 6.931840 GGTTTCAGTTTCTGAGACTCTGTATT 59.068 38.462 16.09 0.00 42.70 1.89
3849 6642 6.042093 TGGTTTCAGTTTCTGAGACTCTGTAT 59.958 38.462 16.09 0.00 42.70 2.29
3850 6643 5.362717 TGGTTTCAGTTTCTGAGACTCTGTA 59.637 40.000 16.09 0.00 42.70 2.74
3851 6644 4.162320 TGGTTTCAGTTTCTGAGACTCTGT 59.838 41.667 16.09 0.00 42.70 3.41
3852 6645 4.697514 TGGTTTCAGTTTCTGAGACTCTG 58.302 43.478 16.09 3.34 42.70 3.35
3853 6646 4.742138 GCTGGTTTCAGTTTCTGAGACTCT 60.742 45.833 16.09 0.00 42.70 3.24
3854 6647 3.496507 GCTGGTTTCAGTTTCTGAGACTC 59.503 47.826 16.09 0.00 42.70 3.36
3855 6648 3.118261 TGCTGGTTTCAGTTTCTGAGACT 60.118 43.478 16.09 0.00 42.70 3.24
3856 6649 3.206150 TGCTGGTTTCAGTTTCTGAGAC 58.794 45.455 10.59 10.59 42.48 3.36
3857 6650 3.558931 TGCTGGTTTCAGTTTCTGAGA 57.441 42.857 0.00 0.00 41.75 3.27
3858 6651 3.004106 CCTTGCTGGTTTCAGTTTCTGAG 59.996 47.826 0.00 0.00 41.75 3.35
3859 6652 2.951642 CCTTGCTGGTTTCAGTTTCTGA 59.048 45.455 0.00 0.00 42.78 3.27
3860 6653 2.544486 GCCTTGCTGGTTTCAGTTTCTG 60.544 50.000 0.00 0.00 42.78 3.02
3861 6654 1.683385 GCCTTGCTGGTTTCAGTTTCT 59.317 47.619 0.00 0.00 42.78 2.52
3862 6655 1.683385 AGCCTTGCTGGTTTCAGTTTC 59.317 47.619 0.00 0.00 42.78 2.78
3863 6656 1.780503 AGCCTTGCTGGTTTCAGTTT 58.219 45.000 0.00 0.00 42.78 2.66
3864 6657 2.106511 TCTAGCCTTGCTGGTTTCAGTT 59.893 45.455 0.00 0.00 42.78 3.16
3865 6658 1.699634 TCTAGCCTTGCTGGTTTCAGT 59.300 47.619 0.00 0.00 42.78 3.41
3866 6659 2.027745 TCTCTAGCCTTGCTGGTTTCAG 60.028 50.000 0.00 0.00 40.10 3.02
3867 6660 1.977854 TCTCTAGCCTTGCTGGTTTCA 59.022 47.619 0.00 0.00 40.10 2.69
3868 6661 2.234908 TCTCTCTAGCCTTGCTGGTTTC 59.765 50.000 0.00 0.00 40.10 2.78
3869 6662 2.260822 TCTCTCTAGCCTTGCTGGTTT 58.739 47.619 0.00 0.00 40.10 3.27
3870 6663 1.944177 TCTCTCTAGCCTTGCTGGTT 58.056 50.000 0.00 0.00 40.10 3.67
3871 6664 1.944177 TTCTCTCTAGCCTTGCTGGT 58.056 50.000 0.00 0.00 40.10 4.00
3872 6665 2.499289 TCTTTCTCTCTAGCCTTGCTGG 59.501 50.000 0.00 0.00 40.10 4.85
3873 6666 3.430651 CCTCTTTCTCTCTAGCCTTGCTG 60.431 52.174 0.00 0.00 40.10 4.41
3874 6667 2.765699 CCTCTTTCTCTCTAGCCTTGCT 59.234 50.000 0.00 0.00 43.41 3.91
3875 6668 2.763448 TCCTCTTTCTCTCTAGCCTTGC 59.237 50.000 0.00 0.00 0.00 4.01
3876 6669 5.413309 TTTCCTCTTTCTCTCTAGCCTTG 57.587 43.478 0.00 0.00 0.00 3.61
3877 6670 5.570641 GCTTTTCCTCTTTCTCTCTAGCCTT 60.571 44.000 0.00 0.00 0.00 4.35
3878 6671 4.081142 GCTTTTCCTCTTTCTCTCTAGCCT 60.081 45.833 0.00 0.00 0.00 4.58
3879 6672 4.188462 GCTTTTCCTCTTTCTCTCTAGCC 58.812 47.826 0.00 0.00 0.00 3.93
3880 6673 3.862845 CGCTTTTCCTCTTTCTCTCTAGC 59.137 47.826 0.00 0.00 0.00 3.42
3881 6674 5.105917 ACTCGCTTTTCCTCTTTCTCTCTAG 60.106 44.000 0.00 0.00 0.00 2.43
3882 6675 4.767928 ACTCGCTTTTCCTCTTTCTCTCTA 59.232 41.667 0.00 0.00 0.00 2.43
3883 6676 3.576550 ACTCGCTTTTCCTCTTTCTCTCT 59.423 43.478 0.00 0.00 0.00 3.10
3884 6677 3.920446 ACTCGCTTTTCCTCTTTCTCTC 58.080 45.455 0.00 0.00 0.00 3.20
3885 6678 4.311606 GAACTCGCTTTTCCTCTTTCTCT 58.688 43.478 0.00 0.00 0.00 3.10
3886 6679 3.122111 CGAACTCGCTTTTCCTCTTTCTC 59.878 47.826 0.00 0.00 0.00 2.87
3887 6680 3.060602 CGAACTCGCTTTTCCTCTTTCT 58.939 45.455 0.00 0.00 0.00 2.52
3888 6681 2.157863 CCGAACTCGCTTTTCCTCTTTC 59.842 50.000 0.00 0.00 38.18 2.62
3889 6682 2.143925 CCGAACTCGCTTTTCCTCTTT 58.856 47.619 0.00 0.00 38.18 2.52
3890 6683 1.608283 CCCGAACTCGCTTTTCCTCTT 60.608 52.381 0.00 0.00 38.18 2.85
3891 6684 0.037232 CCCGAACTCGCTTTTCCTCT 60.037 55.000 0.00 0.00 38.18 3.69
3892 6685 1.019805 CCCCGAACTCGCTTTTCCTC 61.020 60.000 0.00 0.00 38.18 3.71
3893 6686 1.003718 CCCCGAACTCGCTTTTCCT 60.004 57.895 0.00 0.00 38.18 3.36
3894 6687 2.687805 GCCCCGAACTCGCTTTTCC 61.688 63.158 0.00 0.00 38.18 3.13
3895 6688 1.512156 TTGCCCCGAACTCGCTTTTC 61.512 55.000 0.00 0.00 38.18 2.29
3896 6689 1.527380 TTGCCCCGAACTCGCTTTT 60.527 52.632 0.00 0.00 38.18 2.27
3897 6690 2.112297 TTGCCCCGAACTCGCTTT 59.888 55.556 0.00 0.00 38.18 3.51
3898 6691 2.668550 GTTGCCCCGAACTCGCTT 60.669 61.111 0.00 0.00 38.18 4.68
3899 6692 3.936203 TGTTGCCCCGAACTCGCT 61.936 61.111 0.00 0.00 38.18 4.93
3900 6693 3.723348 GTGTTGCCCCGAACTCGC 61.723 66.667 0.00 0.00 38.18 5.03
3901 6694 3.047877 GGTGTTGCCCCGAACTCG 61.048 66.667 0.00 0.00 39.44 4.18
3902 6695 1.966451 CTGGTGTTGCCCCGAACTC 60.966 63.158 0.00 0.00 36.04 3.01
3903 6696 2.113139 CTGGTGTTGCCCCGAACT 59.887 61.111 0.00 0.00 36.04 3.01
3904 6697 2.969300 TTCCTGGTGTTGCCCCGAAC 62.969 60.000 0.00 0.00 36.04 3.95
3905 6698 2.285889 TTTCCTGGTGTTGCCCCGAA 62.286 55.000 0.00 0.00 36.04 4.30
3906 6699 2.758207 TTTCCTGGTGTTGCCCCGA 61.758 57.895 0.00 0.00 36.04 5.14
3907 6700 2.203422 TTTCCTGGTGTTGCCCCG 60.203 61.111 0.00 0.00 36.04 5.73
3908 6701 2.207229 GGTTTCCTGGTGTTGCCCC 61.207 63.158 0.00 0.00 36.04 5.80
3909 6702 2.207229 GGGTTTCCTGGTGTTGCCC 61.207 63.158 0.00 0.00 36.04 5.36
3910 6703 1.456705 TGGGTTTCCTGGTGTTGCC 60.457 57.895 0.00 0.00 37.90 4.52
3911 6704 0.755327 AGTGGGTTTCCTGGTGTTGC 60.755 55.000 0.00 0.00 0.00 4.17
3912 6705 2.649531 TAGTGGGTTTCCTGGTGTTG 57.350 50.000 0.00 0.00 0.00 3.33
3913 6706 2.986728 AGATAGTGGGTTTCCTGGTGTT 59.013 45.455 0.00 0.00 0.00 3.32
3914 6707 2.305927 CAGATAGTGGGTTTCCTGGTGT 59.694 50.000 0.00 0.00 0.00 4.16
3915 6708 2.941415 GCAGATAGTGGGTTTCCTGGTG 60.941 54.545 0.00 0.00 0.00 4.17
3916 6709 1.282157 GCAGATAGTGGGTTTCCTGGT 59.718 52.381 0.00 0.00 0.00 4.00
3917 6710 1.743772 CGCAGATAGTGGGTTTCCTGG 60.744 57.143 0.00 0.00 34.37 4.45
3918 6711 1.656652 CGCAGATAGTGGGTTTCCTG 58.343 55.000 0.00 0.00 34.37 3.86
3919 6712 0.107654 GCGCAGATAGTGGGTTTCCT 60.108 55.000 0.30 0.00 41.24 3.36
3920 6713 1.095807 GGCGCAGATAGTGGGTTTCC 61.096 60.000 10.83 0.00 41.24 3.13
3921 6714 0.107654 AGGCGCAGATAGTGGGTTTC 60.108 55.000 10.83 0.00 41.24 2.78
3922 6715 0.392998 CAGGCGCAGATAGTGGGTTT 60.393 55.000 10.83 0.00 41.24 3.27
3923 6716 1.221840 CAGGCGCAGATAGTGGGTT 59.778 57.895 10.83 0.00 41.24 4.11
3924 6717 1.961180 GACAGGCGCAGATAGTGGGT 61.961 60.000 10.83 0.00 41.24 4.51
3925 6718 1.227380 GACAGGCGCAGATAGTGGG 60.227 63.158 10.83 0.00 42.10 4.61
3926 6719 0.105593 ATGACAGGCGCAGATAGTGG 59.894 55.000 10.83 0.00 0.00 4.00
3927 6720 1.202452 TGATGACAGGCGCAGATAGTG 60.202 52.381 10.83 0.00 0.00 2.74
3928 6721 1.068281 CTGATGACAGGCGCAGATAGT 59.932 52.381 10.83 0.00 40.14 2.12
3929 6722 1.780806 CTGATGACAGGCGCAGATAG 58.219 55.000 10.83 0.00 40.14 2.08
3930 6723 3.974222 CTGATGACAGGCGCAGATA 57.026 52.632 10.83 0.00 40.14 1.98
3931 6724 4.850822 CTGATGACAGGCGCAGAT 57.149 55.556 10.83 0.00 40.14 2.90
3939 6732 4.572909 TGATCTGTTGTTCCTGATGACAG 58.427 43.478 0.00 0.00 43.12 3.51
3940 6733 4.622260 TGATCTGTTGTTCCTGATGACA 57.378 40.909 0.00 0.00 0.00 3.58
3941 6734 4.334759 CCATGATCTGTTGTTCCTGATGAC 59.665 45.833 0.00 0.00 0.00 3.06
3942 6735 4.520179 CCATGATCTGTTGTTCCTGATGA 58.480 43.478 0.00 0.00 0.00 2.92
3943 6736 3.630769 CCCATGATCTGTTGTTCCTGATG 59.369 47.826 0.00 0.00 0.00 3.07
3944 6737 3.372349 CCCCATGATCTGTTGTTCCTGAT 60.372 47.826 0.00 0.00 0.00 2.90
3945 6738 2.025981 CCCCATGATCTGTTGTTCCTGA 60.026 50.000 0.00 0.00 0.00 3.86
3946 6739 2.372264 CCCCATGATCTGTTGTTCCTG 58.628 52.381 0.00 0.00 0.00 3.86
3947 6740 1.341383 GCCCCATGATCTGTTGTTCCT 60.341 52.381 0.00 0.00 0.00 3.36
3948 6741 1.106285 GCCCCATGATCTGTTGTTCC 58.894 55.000 0.00 0.00 0.00 3.62
3949 6742 0.734889 CGCCCCATGATCTGTTGTTC 59.265 55.000 0.00 0.00 0.00 3.18
3950 6743 0.327924 TCGCCCCATGATCTGTTGTT 59.672 50.000 0.00 0.00 0.00 2.83
3951 6744 0.327924 TTCGCCCCATGATCTGTTGT 59.672 50.000 0.00 0.00 0.00 3.32
3952 6745 1.462616 TTTCGCCCCATGATCTGTTG 58.537 50.000 0.00 0.00 0.00 3.33
3953 6746 1.818674 GTTTTCGCCCCATGATCTGTT 59.181 47.619 0.00 0.00 0.00 3.16
3954 6747 1.463674 GTTTTCGCCCCATGATCTGT 58.536 50.000 0.00 0.00 0.00 3.41
3955 6748 0.740737 GGTTTTCGCCCCATGATCTG 59.259 55.000 0.00 0.00 0.00 2.90
3956 6749 0.625849 AGGTTTTCGCCCCATGATCT 59.374 50.000 0.00 0.00 0.00 2.75
3957 6750 0.740737 CAGGTTTTCGCCCCATGATC 59.259 55.000 0.00 0.00 0.00 2.92
3958 6751 0.684153 CCAGGTTTTCGCCCCATGAT 60.684 55.000 0.00 0.00 0.00 2.45
3959 6752 1.304052 CCAGGTTTTCGCCCCATGA 60.304 57.895 0.00 0.00 0.00 3.07
3960 6753 2.350458 CCCAGGTTTTCGCCCCATG 61.350 63.158 0.00 0.00 0.00 3.66
3961 6754 2.037208 CCCAGGTTTTCGCCCCAT 59.963 61.111 0.00 0.00 0.00 4.00
3962 6755 3.503839 ACCCAGGTTTTCGCCCCA 61.504 61.111 0.00 0.00 0.00 4.96
3963 6756 2.989253 CACCCAGGTTTTCGCCCC 60.989 66.667 0.00 0.00 0.00 5.80
3964 6757 2.203437 ACACCCAGGTTTTCGCCC 60.203 61.111 0.00 0.00 0.00 6.13
3965 6758 1.527380 TGACACCCAGGTTTTCGCC 60.527 57.895 0.00 0.00 0.00 5.54
3966 6759 1.652563 GTGACACCCAGGTTTTCGC 59.347 57.895 0.00 0.00 0.00 4.70
3967 6760 2.327228 GGTGACACCCAGGTTTTCG 58.673 57.895 14.16 0.00 30.04 3.46
3977 6770 2.122167 TGCGGTTTTGGGTGACACC 61.122 57.895 16.86 16.86 37.60 4.16
3978 6771 1.065109 GTGCGGTTTTGGGTGACAC 59.935 57.895 0.00 0.00 0.00 3.67
3979 6772 0.180642 TAGTGCGGTTTTGGGTGACA 59.819 50.000 0.00 0.00 0.00 3.58
3980 6773 0.589708 GTAGTGCGGTTTTGGGTGAC 59.410 55.000 0.00 0.00 0.00 3.67
3981 6774 0.881159 CGTAGTGCGGTTTTGGGTGA 60.881 55.000 0.00 0.00 36.85 4.02
3982 6775 0.881159 TCGTAGTGCGGTTTTGGGTG 60.881 55.000 0.00 0.00 41.72 4.61
3983 6776 0.179051 TTCGTAGTGCGGTTTTGGGT 60.179 50.000 0.00 0.00 41.72 4.51
3984 6777 0.236449 GTTCGTAGTGCGGTTTTGGG 59.764 55.000 0.00 0.00 41.72 4.12
3985 6778 0.938713 TGTTCGTAGTGCGGTTTTGG 59.061 50.000 0.00 0.00 41.72 3.28
3986 6779 1.333435 GGTGTTCGTAGTGCGGTTTTG 60.333 52.381 0.00 0.00 41.72 2.44
3987 6780 0.939419 GGTGTTCGTAGTGCGGTTTT 59.061 50.000 0.00 0.00 41.72 2.43
3988 6781 0.105408 AGGTGTTCGTAGTGCGGTTT 59.895 50.000 0.00 0.00 41.72 3.27
3989 6782 0.961019 TAGGTGTTCGTAGTGCGGTT 59.039 50.000 0.00 0.00 41.72 4.44
3990 6783 0.242017 GTAGGTGTTCGTAGTGCGGT 59.758 55.000 0.00 0.00 41.72 5.68
3991 6784 0.795735 CGTAGGTGTTCGTAGTGCGG 60.796 60.000 0.00 0.00 41.72 5.69
3992 6785 1.400990 GCGTAGGTGTTCGTAGTGCG 61.401 60.000 0.00 0.00 43.01 5.34
3993 6786 2.356794 GCGTAGGTGTTCGTAGTGC 58.643 57.895 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.