Multiple sequence alignment - TraesCS1D01G076800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G076800 chr1D 100.000 2687 0 0 1 2687 58765192 58762506 0.000000e+00 4963.0
1 TraesCS1D01G076800 chr1D 91.743 1744 126 11 960 2687 58628733 58626992 0.000000e+00 2407.0
2 TraesCS1D01G076800 chr1D 82.506 1572 252 18 1100 2661 58869855 58868297 0.000000e+00 1358.0
3 TraesCS1D01G076800 chr1D 84.352 818 127 1 1870 2687 36623655 36622839 0.000000e+00 800.0
4 TraesCS1D01G076800 chr1D 83.914 833 127 7 1859 2687 38258744 38257915 0.000000e+00 789.0
5 TraesCS1D01G076800 chr1D 81.321 878 151 12 1003 1871 49956269 49957142 0.000000e+00 701.0
6 TraesCS1D01G076800 chr1B 91.005 1901 138 21 790 2687 94233465 94231595 0.000000e+00 2532.0
7 TraesCS1D01G076800 chr1B 82.409 1569 253 15 1100 2661 94327166 94325614 0.000000e+00 1347.0
8 TraesCS1D01G076800 chr1A 92.124 1676 118 10 917 2585 57640292 57638624 0.000000e+00 2351.0
9 TraesCS1D01G076800 chr1A 91.998 1637 122 7 1057 2687 57405804 57404171 0.000000e+00 2289.0
10 TraesCS1D01G076800 chr1A 81.730 1653 284 12 1033 2671 37512223 37510575 0.000000e+00 1363.0
11 TraesCS1D01G076800 chr1A 81.087 883 149 14 1007 1875 49346758 49347636 0.000000e+00 689.0
12 TraesCS1D01G076800 chr1A 79.507 893 159 17 1004 1876 49354783 49355671 4.920000e-172 614.0
13 TraesCS1D01G076800 chr1A 93.382 136 9 0 784 919 57673788 57673653 4.540000e-48 202.0
14 TraesCS1D01G076800 chr3D 93.699 492 27 4 146 634 160930494 160930984 0.000000e+00 734.0
15 TraesCS1D01G076800 chr3D 93.173 498 28 6 144 636 360226863 360227359 0.000000e+00 726.0
16 TraesCS1D01G076800 chr3D 92.786 499 29 5 146 639 372827693 372827197 0.000000e+00 715.0
17 TraesCS1D01G076800 chr6D 93.429 487 28 4 151 636 275346766 275347249 0.000000e+00 719.0
18 TraesCS1D01G076800 chr6D 92.615 501 32 5 140 636 121090931 121091430 0.000000e+00 715.0
19 TraesCS1D01G076800 chr6D 91.837 49 1 3 74 121 3467301 3467255 6.210000e-07 65.8
20 TraesCS1D01G076800 chr5D 92.958 497 30 5 146 638 315796777 315796282 0.000000e+00 719.0
21 TraesCS1D01G076800 chr5D 92.958 497 28 7 146 638 343056273 343055780 0.000000e+00 717.0
22 TraesCS1D01G076800 chr2D 92.958 497 27 5 146 636 433983883 433984377 0.000000e+00 717.0
23 TraesCS1D01G076800 chr4D 92.786 499 28 5 146 636 309095990 309096488 0.000000e+00 715.0
24 TraesCS1D01G076800 chr4D 80.508 118 17 5 12 125 36437853 36437738 4.770000e-13 86.1
25 TraesCS1D01G076800 chr4D 96.875 32 1 0 121 152 386495416 386495385 1.000000e-03 54.7
26 TraesCS1D01G076800 chr6A 83.036 112 16 3 18 127 532842694 532842584 6.120000e-17 99.0
27 TraesCS1D01G076800 chr3A 86.111 72 4 5 58 127 590596033 590596100 3.710000e-09 73.1
28 TraesCS1D01G076800 chr3A 86.111 72 4 5 58 127 590596779 590596846 3.710000e-09 73.1
29 TraesCS1D01G076800 chr5B 89.796 49 4 1 74 121 378503052 378503004 8.030000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G076800 chr1D 58762506 58765192 2686 True 4963 4963 100.000 1 2687 1 chr1D.!!$R4 2686
1 TraesCS1D01G076800 chr1D 58626992 58628733 1741 True 2407 2407 91.743 960 2687 1 chr1D.!!$R3 1727
2 TraesCS1D01G076800 chr1D 58868297 58869855 1558 True 1358 1358 82.506 1100 2661 1 chr1D.!!$R5 1561
3 TraesCS1D01G076800 chr1D 36622839 36623655 816 True 800 800 84.352 1870 2687 1 chr1D.!!$R1 817
4 TraesCS1D01G076800 chr1D 38257915 38258744 829 True 789 789 83.914 1859 2687 1 chr1D.!!$R2 828
5 TraesCS1D01G076800 chr1D 49956269 49957142 873 False 701 701 81.321 1003 1871 1 chr1D.!!$F1 868
6 TraesCS1D01G076800 chr1B 94231595 94233465 1870 True 2532 2532 91.005 790 2687 1 chr1B.!!$R1 1897
7 TraesCS1D01G076800 chr1B 94325614 94327166 1552 True 1347 1347 82.409 1100 2661 1 chr1B.!!$R2 1561
8 TraesCS1D01G076800 chr1A 57638624 57640292 1668 True 2351 2351 92.124 917 2585 1 chr1A.!!$R3 1668
9 TraesCS1D01G076800 chr1A 57404171 57405804 1633 True 2289 2289 91.998 1057 2687 1 chr1A.!!$R2 1630
10 TraesCS1D01G076800 chr1A 37510575 37512223 1648 True 1363 1363 81.730 1033 2671 1 chr1A.!!$R1 1638
11 TraesCS1D01G076800 chr1A 49346758 49347636 878 False 689 689 81.087 1007 1875 1 chr1A.!!$F1 868
12 TraesCS1D01G076800 chr1A 49354783 49355671 888 False 614 614 79.507 1004 1876 1 chr1A.!!$F2 872

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 557 0.107654 GGCCAGTAGTGCTCGGATTT 60.108 55.0 0.0 0.0 0.0 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 1992 1.153756 CAGGTTTGAGGCCCTTGGT 59.846 57.895 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.806429 ATTGGATTCCTTTGTTTTTCTTTGTT 57.194 26.923 3.95 0.00 0.00 2.83
27 28 8.628630 TTGGATTCCTTTGTTTTTCTTTGTTT 57.371 26.923 3.95 0.00 0.00 2.83
28 29 9.726438 TTGGATTCCTTTGTTTTTCTTTGTTTA 57.274 25.926 3.95 0.00 0.00 2.01
29 30 9.377312 TGGATTCCTTTGTTTTTCTTTGTTTAG 57.623 29.630 3.95 0.00 0.00 1.85
30 31 9.378551 GGATTCCTTTGTTTTTCTTTGTTTAGT 57.621 29.630 0.00 0.00 0.00 2.24
34 35 9.765795 TCCTTTGTTTTTCTTTGTTTAGTTTCA 57.234 25.926 0.00 0.00 0.00 2.69
39 40 9.495572 TGTTTTTCTTTGTTTAGTTTCATTGGT 57.504 25.926 0.00 0.00 0.00 3.67
43 44 9.712305 TTTCTTTGTTTAGTTTCATTGGTTTCA 57.288 25.926 0.00 0.00 0.00 2.69
44 45 9.883142 TTCTTTGTTTAGTTTCATTGGTTTCAT 57.117 25.926 0.00 0.00 0.00 2.57
45 46 9.883142 TCTTTGTTTAGTTTCATTGGTTTCATT 57.117 25.926 0.00 0.00 0.00 2.57
49 50 9.442047 TGTTTAGTTTCATTGGTTTCATTTTGT 57.558 25.926 0.00 0.00 0.00 2.83
52 53 9.658799 TTAGTTTCATTGGTTTCATTTTGTTGA 57.341 25.926 0.00 0.00 0.00 3.18
53 54 8.200364 AGTTTCATTGGTTTCATTTTGTTGAG 57.800 30.769 0.00 0.00 0.00 3.02
54 55 6.601741 TTCATTGGTTTCATTTTGTTGAGC 57.398 33.333 0.00 0.00 0.00 4.26
55 56 5.668471 TCATTGGTTTCATTTTGTTGAGCA 58.332 33.333 0.00 0.00 0.00 4.26
56 57 5.523188 TCATTGGTTTCATTTTGTTGAGCAC 59.477 36.000 0.00 0.00 0.00 4.40
57 58 4.462508 TGGTTTCATTTTGTTGAGCACA 57.537 36.364 0.00 0.00 0.00 4.57
58 59 5.021033 TGGTTTCATTTTGTTGAGCACAT 57.979 34.783 0.00 0.00 34.43 3.21
59 60 4.809958 TGGTTTCATTTTGTTGAGCACATG 59.190 37.500 0.00 0.00 34.43 3.21
60 61 4.810491 GGTTTCATTTTGTTGAGCACATGT 59.190 37.500 0.00 0.00 34.43 3.21
61 62 5.982516 GGTTTCATTTTGTTGAGCACATGTA 59.017 36.000 0.00 0.00 34.43 2.29
62 63 6.478344 GGTTTCATTTTGTTGAGCACATGTAA 59.522 34.615 0.00 0.00 34.43 2.41
63 64 7.010923 GGTTTCATTTTGTTGAGCACATGTAAA 59.989 33.333 0.00 0.00 34.43 2.01
64 65 7.462109 TTCATTTTGTTGAGCACATGTAAAC 57.538 32.000 0.00 2.11 34.43 2.01
65 66 6.804677 TCATTTTGTTGAGCACATGTAAACT 58.195 32.000 0.00 0.00 34.43 2.66
66 67 7.264221 TCATTTTGTTGAGCACATGTAAACTT 58.736 30.769 0.00 0.00 34.43 2.66
67 68 7.763528 TCATTTTGTTGAGCACATGTAAACTTT 59.236 29.630 0.00 0.00 34.43 2.66
68 69 7.897575 TTTTGTTGAGCACATGTAAACTTTT 57.102 28.000 0.00 0.00 34.43 2.27
69 70 7.897575 TTTGTTGAGCACATGTAAACTTTTT 57.102 28.000 0.00 0.00 34.43 1.94
70 71 7.518731 TTGTTGAGCACATGTAAACTTTTTC 57.481 32.000 0.00 0.00 34.43 2.29
71 72 6.625362 TGTTGAGCACATGTAAACTTTTTCA 58.375 32.000 0.00 0.00 0.00 2.69
72 73 6.751425 TGTTGAGCACATGTAAACTTTTTCAG 59.249 34.615 0.00 0.00 0.00 3.02
73 74 6.449635 TGAGCACATGTAAACTTTTTCAGT 57.550 33.333 0.00 0.00 37.30 3.41
74 75 7.561021 TGAGCACATGTAAACTTTTTCAGTA 57.439 32.000 0.00 0.00 32.94 2.74
75 76 7.414436 TGAGCACATGTAAACTTTTTCAGTAC 58.586 34.615 0.00 0.00 32.94 2.73
76 77 7.066404 TGAGCACATGTAAACTTTTTCAGTACA 59.934 33.333 0.00 0.00 32.94 2.90
77 78 7.193595 AGCACATGTAAACTTTTTCAGTACAC 58.806 34.615 0.00 0.00 32.94 2.90
78 79 6.970043 GCACATGTAAACTTTTTCAGTACACA 59.030 34.615 0.00 0.00 32.94 3.72
79 80 7.647715 GCACATGTAAACTTTTTCAGTACACAT 59.352 33.333 0.00 0.00 39.19 3.21
80 81 9.515020 CACATGTAAACTTTTTCAGTACACATT 57.485 29.630 0.00 0.00 37.69 2.71
81 82 9.515020 ACATGTAAACTTTTTCAGTACACATTG 57.485 29.630 0.00 0.00 37.69 2.82
82 83 9.515020 CATGTAAACTTTTTCAGTACACATTGT 57.485 29.630 0.00 0.00 37.69 2.71
83 84 9.730420 ATGTAAACTTTTTCAGTACACATTGTC 57.270 29.630 0.00 0.00 36.98 3.18
84 85 8.185505 TGTAAACTTTTTCAGTACACATTGTCC 58.814 33.333 0.00 0.00 32.94 4.02
85 86 6.767524 AACTTTTTCAGTACACATTGTCCA 57.232 33.333 0.00 0.00 32.94 4.02
86 87 6.959639 ACTTTTTCAGTACACATTGTCCAT 57.040 33.333 0.00 0.00 31.97 3.41
87 88 7.346751 ACTTTTTCAGTACACATTGTCCATT 57.653 32.000 0.00 0.00 31.97 3.16
88 89 7.781056 ACTTTTTCAGTACACATTGTCCATTT 58.219 30.769 0.00 0.00 31.97 2.32
89 90 8.257306 ACTTTTTCAGTACACATTGTCCATTTT 58.743 29.630 0.00 0.00 31.97 1.82
90 91 9.097257 CTTTTTCAGTACACATTGTCCATTTTT 57.903 29.630 0.00 0.00 0.00 1.94
91 92 8.641499 TTTTCAGTACACATTGTCCATTTTTC 57.359 30.769 0.00 0.00 0.00 2.29
92 93 5.996219 TCAGTACACATTGTCCATTTTTCG 58.004 37.500 0.00 0.00 0.00 3.46
93 94 5.529430 TCAGTACACATTGTCCATTTTTCGT 59.471 36.000 0.00 0.00 0.00 3.85
94 95 6.706716 TCAGTACACATTGTCCATTTTTCGTA 59.293 34.615 0.00 0.00 0.00 3.43
95 96 7.389330 TCAGTACACATTGTCCATTTTTCGTAT 59.611 33.333 0.00 0.00 0.00 3.06
96 97 8.661257 CAGTACACATTGTCCATTTTTCGTATA 58.339 33.333 0.00 0.00 0.00 1.47
97 98 8.662141 AGTACACATTGTCCATTTTTCGTATAC 58.338 33.333 0.00 0.00 0.00 1.47
98 99 7.441890 ACACATTGTCCATTTTTCGTATACA 57.558 32.000 3.32 0.00 0.00 2.29
99 100 8.050778 ACACATTGTCCATTTTTCGTATACAT 57.949 30.769 3.32 0.00 0.00 2.29
100 101 8.181573 ACACATTGTCCATTTTTCGTATACATC 58.818 33.333 3.32 0.00 0.00 3.06
101 102 8.180920 CACATTGTCCATTTTTCGTATACATCA 58.819 33.333 3.32 0.00 0.00 3.07
102 103 8.397906 ACATTGTCCATTTTTCGTATACATCAG 58.602 33.333 3.32 0.00 0.00 2.90
103 104 8.611757 CATTGTCCATTTTTCGTATACATCAGA 58.388 33.333 3.32 0.00 0.00 3.27
104 105 8.554835 TTGTCCATTTTTCGTATACATCAGAA 57.445 30.769 3.32 0.00 0.00 3.02
105 106 8.554835 TGTCCATTTTTCGTATACATCAGAAA 57.445 30.769 3.32 1.98 0.00 2.52
106 107 8.447833 TGTCCATTTTTCGTATACATCAGAAAC 58.552 33.333 3.32 0.00 33.06 2.78
107 108 8.447833 GTCCATTTTTCGTATACATCAGAAACA 58.552 33.333 3.32 0.00 33.06 2.83
108 109 9.173021 TCCATTTTTCGTATACATCAGAAACAT 57.827 29.630 3.32 1.14 33.06 2.71
144 145 9.263538 ACACACTTTTCGTATACATTAGAAACA 57.736 29.630 3.32 0.00 33.06 2.83
166 167 9.831737 AAACATATTATACTAGTAAGGTACGCG 57.168 33.333 3.53 3.53 0.00 6.01
167 168 8.553459 ACATATTATACTAGTAAGGTACGCGT 57.447 34.615 19.17 19.17 0.00 6.01
168 169 8.446273 ACATATTATACTAGTAAGGTACGCGTG 58.554 37.037 24.59 3.61 0.00 5.34
169 170 3.615849 ATACTAGTAAGGTACGCGTGC 57.384 47.619 24.59 22.03 0.00 5.34
170 171 1.167851 ACTAGTAAGGTACGCGTGCA 58.832 50.000 28.13 5.66 0.00 4.57
171 172 1.747355 ACTAGTAAGGTACGCGTGCAT 59.253 47.619 28.13 19.85 0.00 3.96
172 173 2.165030 ACTAGTAAGGTACGCGTGCATT 59.835 45.455 28.36 28.36 0.00 3.56
173 174 2.945447 AGTAAGGTACGCGTGCATTA 57.055 45.000 26.31 26.31 0.00 1.90
174 175 2.533266 AGTAAGGTACGCGTGCATTAC 58.467 47.619 39.10 39.10 40.80 1.89
175 176 2.094597 AGTAAGGTACGCGTGCATTACA 60.095 45.455 42.87 24.41 42.16 2.41
176 177 1.798283 AAGGTACGCGTGCATTACAA 58.202 45.000 24.97 0.00 0.00 2.41
177 178 1.355971 AGGTACGCGTGCATTACAAG 58.644 50.000 28.13 0.00 0.00 3.16
188 189 5.944049 GTGCATTACAAGCATGAGATTTG 57.056 39.130 0.00 0.00 44.79 2.32
189 190 4.802039 GTGCATTACAAGCATGAGATTTGG 59.198 41.667 0.00 0.00 44.79 3.28
190 191 4.463539 TGCATTACAAGCATGAGATTTGGT 59.536 37.500 0.00 0.00 37.02 3.67
191 192 5.651576 TGCATTACAAGCATGAGATTTGGTA 59.348 36.000 0.00 0.00 37.02 3.25
192 193 6.152492 TGCATTACAAGCATGAGATTTGGTAA 59.848 34.615 0.00 0.00 37.02 2.85
193 194 6.473455 GCATTACAAGCATGAGATTTGGTAAC 59.527 38.462 0.00 0.00 0.00 2.50
194 195 6.509418 TTACAAGCATGAGATTTGGTAACC 57.491 37.500 0.00 0.00 0.00 2.85
195 196 4.406456 ACAAGCATGAGATTTGGTAACCA 58.594 39.130 0.00 0.00 0.00 3.67
196 197 4.832266 ACAAGCATGAGATTTGGTAACCAA 59.168 37.500 0.00 0.00 42.29 3.67
247 248 9.948964 ATATGTAAGCTTTGAGTCATATATGCA 57.051 29.630 3.20 0.00 30.18 3.96
248 249 8.859236 ATGTAAGCTTTGAGTCATATATGCAT 57.141 30.769 3.20 3.79 0.00 3.96
249 250 8.091385 TGTAAGCTTTGAGTCATATATGCATG 57.909 34.615 10.16 0.00 0.00 4.06
250 251 7.933033 TGTAAGCTTTGAGTCATATATGCATGA 59.067 33.333 10.16 0.00 32.50 3.07
251 252 7.997773 AAGCTTTGAGTCATATATGCATGAT 57.002 32.000 10.16 0.00 37.28 2.45
252 253 7.379098 AGCTTTGAGTCATATATGCATGATG 57.621 36.000 10.16 12.77 37.28 3.07
253 254 6.940867 AGCTTTGAGTCATATATGCATGATGT 59.059 34.615 10.16 0.00 37.28 3.06
254 255 8.098912 AGCTTTGAGTCATATATGCATGATGTA 58.901 33.333 10.16 0.00 37.28 2.29
255 256 8.388853 GCTTTGAGTCATATATGCATGATGTAG 58.611 37.037 10.16 6.71 37.28 2.74
256 257 9.649167 CTTTGAGTCATATATGCATGATGTAGA 57.351 33.333 10.16 0.00 37.28 2.59
292 293 9.713684 AATTCTTATAGTTGATCCCATCCAAAA 57.286 29.630 0.00 0.00 0.00 2.44
293 294 9.887862 ATTCTTATAGTTGATCCCATCCAAAAT 57.112 29.630 0.00 0.00 0.00 1.82
294 295 8.924511 TCTTATAGTTGATCCCATCCAAAATC 57.075 34.615 0.00 0.00 0.00 2.17
295 296 8.501904 TCTTATAGTTGATCCCATCCAAAATCA 58.498 33.333 0.00 0.00 0.00 2.57
296 297 9.135189 CTTATAGTTGATCCCATCCAAAATCAA 57.865 33.333 0.00 0.00 36.16 2.57
297 298 9.659135 TTATAGTTGATCCCATCCAAAATCAAT 57.341 29.630 0.00 0.00 39.53 2.57
298 299 6.879367 AGTTGATCCCATCCAAAATCAATT 57.121 33.333 0.00 0.00 39.53 2.32
299 300 7.976414 AGTTGATCCCATCCAAAATCAATTA 57.024 32.000 0.00 0.00 39.53 1.40
300 301 8.015185 AGTTGATCCCATCCAAAATCAATTAG 57.985 34.615 0.00 0.00 39.53 1.73
301 302 7.620888 AGTTGATCCCATCCAAAATCAATTAGT 59.379 33.333 0.00 0.00 39.53 2.24
302 303 7.976414 TGATCCCATCCAAAATCAATTAGTT 57.024 32.000 0.00 0.00 0.00 2.24
303 304 8.378115 TGATCCCATCCAAAATCAATTAGTTT 57.622 30.769 0.00 0.00 0.00 2.66
304 305 8.824783 TGATCCCATCCAAAATCAATTAGTTTT 58.175 29.630 0.00 0.00 0.00 2.43
344 345 9.894783 TTTTAAAATTCATGGAATTGTGCATTG 57.105 25.926 5.07 0.00 40.77 2.82
345 346 8.618702 TTAAAATTCATGGAATTGTGCATTGT 57.381 26.923 5.07 0.00 40.77 2.71
346 347 9.716531 TTAAAATTCATGGAATTGTGCATTGTA 57.283 25.926 5.07 0.00 40.77 2.41
347 348 8.618702 AAAATTCATGGAATTGTGCATTGTAA 57.381 26.923 5.07 0.00 40.77 2.41
348 349 8.618702 AAATTCATGGAATTGTGCATTGTAAA 57.381 26.923 5.07 0.00 40.77 2.01
349 350 7.837202 ATTCATGGAATTGTGCATTGTAAAG 57.163 32.000 0.00 0.00 32.69 1.85
350 351 6.587206 TCATGGAATTGTGCATTGTAAAGA 57.413 33.333 0.00 0.00 32.69 2.52
351 352 7.172868 TCATGGAATTGTGCATTGTAAAGAT 57.827 32.000 0.00 0.00 32.69 2.40
352 353 8.291191 TCATGGAATTGTGCATTGTAAAGATA 57.709 30.769 0.00 0.00 32.69 1.98
353 354 8.747471 TCATGGAATTGTGCATTGTAAAGATAA 58.253 29.630 0.00 0.00 32.69 1.75
354 355 9.368674 CATGGAATTGTGCATTGTAAAGATAAA 57.631 29.630 0.00 0.00 32.69 1.40
355 356 9.941325 ATGGAATTGTGCATTGTAAAGATAAAA 57.059 25.926 0.00 0.00 30.39 1.52
356 357 9.770097 TGGAATTGTGCATTGTAAAGATAAAAA 57.230 25.926 0.00 0.00 0.00 1.94
405 406 9.942850 AAAAAGGTTTGGACAAATAAGATATGG 57.057 29.630 0.34 0.00 32.36 2.74
406 407 8.893563 AAAGGTTTGGACAAATAAGATATGGA 57.106 30.769 0.34 0.00 32.36 3.41
407 408 8.893563 AAGGTTTGGACAAATAAGATATGGAA 57.106 30.769 0.34 0.00 32.36 3.53
408 409 8.525290 AGGTTTGGACAAATAAGATATGGAAG 57.475 34.615 0.34 0.00 32.36 3.46
409 410 8.336235 AGGTTTGGACAAATAAGATATGGAAGA 58.664 33.333 0.34 0.00 32.36 2.87
410 411 9.136323 GGTTTGGACAAATAAGATATGGAAGAT 57.864 33.333 0.34 0.00 32.36 2.40
428 429 8.609617 TGGAAGATTATAGAGAACAAAGGAGA 57.390 34.615 0.00 0.00 0.00 3.71
429 430 9.046846 TGGAAGATTATAGAGAACAAAGGAGAA 57.953 33.333 0.00 0.00 0.00 2.87
430 431 9.541143 GGAAGATTATAGAGAACAAAGGAGAAG 57.459 37.037 0.00 0.00 0.00 2.85
432 433 9.883142 AAGATTATAGAGAACAAAGGAGAAGTG 57.117 33.333 0.00 0.00 0.00 3.16
433 434 7.984617 AGATTATAGAGAACAAAGGAGAAGTGC 59.015 37.037 0.00 0.00 0.00 4.40
434 435 5.753721 ATAGAGAACAAAGGAGAAGTGCT 57.246 39.130 0.00 0.00 0.00 4.40
435 436 4.429854 AGAGAACAAAGGAGAAGTGCTT 57.570 40.909 0.00 0.00 35.50 3.91
436 437 4.133078 AGAGAACAAAGGAGAAGTGCTTG 58.867 43.478 0.00 0.00 33.98 4.01
437 438 3.879892 GAGAACAAAGGAGAAGTGCTTGT 59.120 43.478 0.00 0.00 33.98 3.16
438 439 3.629398 AGAACAAAGGAGAAGTGCTTGTG 59.371 43.478 0.00 0.00 33.98 3.33
439 440 3.004752 ACAAAGGAGAAGTGCTTGTGT 57.995 42.857 0.00 0.00 33.98 3.72
440 441 2.684881 ACAAAGGAGAAGTGCTTGTGTG 59.315 45.455 0.00 0.00 33.98 3.82
441 442 2.684881 CAAAGGAGAAGTGCTTGTGTGT 59.315 45.455 0.00 0.00 33.98 3.72
442 443 2.717639 AGGAGAAGTGCTTGTGTGTT 57.282 45.000 0.00 0.00 0.00 3.32
443 444 3.004752 AGGAGAAGTGCTTGTGTGTTT 57.995 42.857 0.00 0.00 0.00 2.83
444 445 2.684881 AGGAGAAGTGCTTGTGTGTTTG 59.315 45.455 0.00 0.00 0.00 2.93
445 446 2.682856 GGAGAAGTGCTTGTGTGTTTGA 59.317 45.455 0.00 0.00 0.00 2.69
446 447 3.242870 GGAGAAGTGCTTGTGTGTTTGAG 60.243 47.826 0.00 0.00 0.00 3.02
447 448 2.684881 AGAAGTGCTTGTGTGTTTGAGG 59.315 45.455 0.00 0.00 0.00 3.86
448 449 2.128771 AGTGCTTGTGTGTTTGAGGT 57.871 45.000 0.00 0.00 0.00 3.85
449 450 2.446435 AGTGCTTGTGTGTTTGAGGTT 58.554 42.857 0.00 0.00 0.00 3.50
450 451 2.825532 AGTGCTTGTGTGTTTGAGGTTT 59.174 40.909 0.00 0.00 0.00 3.27
451 452 2.923020 GTGCTTGTGTGTTTGAGGTTTG 59.077 45.455 0.00 0.00 0.00 2.93
452 453 2.560542 TGCTTGTGTGTTTGAGGTTTGT 59.439 40.909 0.00 0.00 0.00 2.83
453 454 2.923020 GCTTGTGTGTTTGAGGTTTGTG 59.077 45.455 0.00 0.00 0.00 3.33
454 455 2.645730 TGTGTGTTTGAGGTTTGTGC 57.354 45.000 0.00 0.00 0.00 4.57
455 456 1.889170 TGTGTGTTTGAGGTTTGTGCA 59.111 42.857 0.00 0.00 0.00 4.57
456 457 2.495270 TGTGTGTTTGAGGTTTGTGCAT 59.505 40.909 0.00 0.00 0.00 3.96
457 458 3.056250 TGTGTGTTTGAGGTTTGTGCATT 60.056 39.130 0.00 0.00 0.00 3.56
458 459 4.158579 TGTGTGTTTGAGGTTTGTGCATTA 59.841 37.500 0.00 0.00 0.00 1.90
459 460 5.163468 TGTGTGTTTGAGGTTTGTGCATTAT 60.163 36.000 0.00 0.00 0.00 1.28
460 461 5.175491 GTGTGTTTGAGGTTTGTGCATTATG 59.825 40.000 0.00 0.00 0.00 1.90
461 462 4.150451 GTGTTTGAGGTTTGTGCATTATGC 59.850 41.667 10.65 10.65 45.29 3.14
462 463 4.039004 TGTTTGAGGTTTGTGCATTATGCT 59.961 37.500 18.44 0.00 45.31 3.79
463 464 4.870123 TTGAGGTTTGTGCATTATGCTT 57.130 36.364 18.44 0.00 45.31 3.91
464 465 5.973899 TTGAGGTTTGTGCATTATGCTTA 57.026 34.783 18.44 4.39 45.31 3.09
465 466 5.973899 TGAGGTTTGTGCATTATGCTTAA 57.026 34.783 18.44 10.17 45.31 1.85
466 467 5.953183 TGAGGTTTGTGCATTATGCTTAAG 58.047 37.500 18.44 0.00 45.31 1.85
467 468 5.476599 TGAGGTTTGTGCATTATGCTTAAGT 59.523 36.000 18.44 2.94 45.31 2.24
468 469 6.015519 TGAGGTTTGTGCATTATGCTTAAGTT 60.016 34.615 18.44 0.00 45.31 2.66
469 470 6.758254 AGGTTTGTGCATTATGCTTAAGTTT 58.242 32.000 18.44 0.00 45.31 2.66
470 471 7.891561 AGGTTTGTGCATTATGCTTAAGTTTA 58.108 30.769 18.44 0.00 45.31 2.01
471 472 8.364142 AGGTTTGTGCATTATGCTTAAGTTTAA 58.636 29.630 18.44 3.36 45.31 1.52
472 473 8.432359 GGTTTGTGCATTATGCTTAAGTTTAAC 58.568 33.333 18.44 5.27 45.31 2.01
473 474 8.432359 GTTTGTGCATTATGCTTAAGTTTAACC 58.568 33.333 18.44 0.00 45.31 2.85
474 475 7.220741 TGTGCATTATGCTTAAGTTTAACCA 57.779 32.000 18.44 0.00 45.31 3.67
475 476 7.835822 TGTGCATTATGCTTAAGTTTAACCAT 58.164 30.769 18.44 0.63 45.31 3.55
476 477 7.758980 TGTGCATTATGCTTAAGTTTAACCATG 59.241 33.333 18.44 0.00 45.31 3.66
477 478 6.756074 TGCATTATGCTTAAGTTTAACCATGC 59.244 34.615 18.44 9.46 45.31 4.06
478 479 6.756074 GCATTATGCTTAAGTTTAACCATGCA 59.244 34.615 10.27 9.21 40.96 3.96
479 480 7.043192 GCATTATGCTTAAGTTTAACCATGCAG 60.043 37.037 10.27 0.00 40.96 4.41
480 481 5.982890 ATGCTTAAGTTTAACCATGCAGT 57.017 34.783 4.02 0.00 32.65 4.40
481 482 5.371115 TGCTTAAGTTTAACCATGCAGTC 57.629 39.130 4.02 0.00 0.00 3.51
482 483 5.070001 TGCTTAAGTTTAACCATGCAGTCT 58.930 37.500 4.02 0.00 0.00 3.24
483 484 5.534654 TGCTTAAGTTTAACCATGCAGTCTT 59.465 36.000 4.02 0.00 0.00 3.01
484 485 6.086871 GCTTAAGTTTAACCATGCAGTCTTC 58.913 40.000 4.02 0.00 0.00 2.87
485 486 6.072452 GCTTAAGTTTAACCATGCAGTCTTCT 60.072 38.462 4.02 0.00 0.00 2.85
486 487 7.119262 GCTTAAGTTTAACCATGCAGTCTTCTA 59.881 37.037 4.02 0.00 0.00 2.10
487 488 8.547967 TTAAGTTTAACCATGCAGTCTTCTAG 57.452 34.615 0.00 0.00 0.00 2.43
488 489 6.360370 AGTTTAACCATGCAGTCTTCTAGA 57.640 37.500 0.00 0.00 0.00 2.43
489 490 6.951971 AGTTTAACCATGCAGTCTTCTAGAT 58.048 36.000 0.00 0.00 0.00 1.98
490 491 7.398024 AGTTTAACCATGCAGTCTTCTAGATT 58.602 34.615 0.00 0.00 0.00 2.40
491 492 8.540388 AGTTTAACCATGCAGTCTTCTAGATTA 58.460 33.333 0.00 0.00 0.00 1.75
492 493 9.331282 GTTTAACCATGCAGTCTTCTAGATTAT 57.669 33.333 0.00 0.00 0.00 1.28
494 495 9.982651 TTAACCATGCAGTCTTCTAGATTATAC 57.017 33.333 0.00 0.00 0.00 1.47
495 496 7.603180 ACCATGCAGTCTTCTAGATTATACA 57.397 36.000 0.00 0.00 0.00 2.29
496 497 8.200024 ACCATGCAGTCTTCTAGATTATACAT 57.800 34.615 0.00 0.00 0.00 2.29
497 498 8.093307 ACCATGCAGTCTTCTAGATTATACATG 58.907 37.037 0.00 4.48 0.00 3.21
498 499 7.064371 CCATGCAGTCTTCTAGATTATACATGC 59.936 40.741 12.89 9.31 31.10 4.06
499 500 7.054491 TGCAGTCTTCTAGATTATACATGCA 57.946 36.000 0.00 2.07 36.52 3.96
500 501 7.674120 TGCAGTCTTCTAGATTATACATGCAT 58.326 34.615 0.00 0.00 34.19 3.96
501 502 7.601508 TGCAGTCTTCTAGATTATACATGCATG 59.398 37.037 25.09 25.09 34.19 4.06
502 503 7.601886 GCAGTCTTCTAGATTATACATGCATGT 59.398 37.037 33.20 33.20 44.48 3.21
503 504 8.923683 CAGTCTTCTAGATTATACATGCATGTG 58.076 37.037 36.72 20.21 41.89 3.21
504 505 8.093307 AGTCTTCTAGATTATACATGCATGTGG 58.907 37.037 36.72 14.33 41.89 4.17
505 506 6.875726 TCTTCTAGATTATACATGCATGTGGC 59.124 38.462 36.72 21.76 41.89 5.01
514 515 4.402851 GCATGTGGCAGAACCTGA 57.597 55.556 0.00 0.00 43.97 3.86
515 516 2.877975 GCATGTGGCAGAACCTGAT 58.122 52.632 0.00 0.00 43.97 2.90
516 517 0.454600 GCATGTGGCAGAACCTGATG 59.545 55.000 0.00 0.00 43.97 3.07
517 518 1.100510 CATGTGGCAGAACCTGATGG 58.899 55.000 0.00 0.00 40.22 3.51
518 519 0.994247 ATGTGGCAGAACCTGATGGA 59.006 50.000 0.00 0.00 40.22 3.41
519 520 0.770499 TGTGGCAGAACCTGATGGAA 59.230 50.000 0.00 0.00 40.22 3.53
520 521 1.355381 TGTGGCAGAACCTGATGGAAT 59.645 47.619 0.00 0.00 40.22 3.01
521 522 1.747355 GTGGCAGAACCTGATGGAATG 59.253 52.381 0.00 0.00 40.22 2.67
522 523 1.355381 TGGCAGAACCTGATGGAATGT 59.645 47.619 0.00 0.00 40.22 2.71
523 524 2.575735 TGGCAGAACCTGATGGAATGTA 59.424 45.455 0.00 0.00 40.22 2.29
524 525 3.209410 GGCAGAACCTGATGGAATGTAG 58.791 50.000 0.00 0.00 37.04 2.74
525 526 3.118261 GGCAGAACCTGATGGAATGTAGA 60.118 47.826 0.00 0.00 37.04 2.59
526 527 4.445448 GGCAGAACCTGATGGAATGTAGAT 60.445 45.833 0.00 0.00 37.04 1.98
527 528 4.514441 GCAGAACCTGATGGAATGTAGATG 59.486 45.833 0.00 0.00 37.04 2.90
528 529 5.685861 GCAGAACCTGATGGAATGTAGATGA 60.686 44.000 0.00 0.00 37.04 2.92
529 530 6.531923 CAGAACCTGATGGAATGTAGATGAT 58.468 40.000 0.00 0.00 37.04 2.45
530 531 7.674120 CAGAACCTGATGGAATGTAGATGATA 58.326 38.462 0.00 0.00 37.04 2.15
531 532 8.319881 CAGAACCTGATGGAATGTAGATGATAT 58.680 37.037 0.00 0.00 37.04 1.63
532 533 8.538701 AGAACCTGATGGAATGTAGATGATATC 58.461 37.037 0.00 0.00 37.04 1.63
533 534 7.192852 ACCTGATGGAATGTAGATGATATCC 57.807 40.000 0.00 0.00 37.04 2.59
534 535 6.732390 ACCTGATGGAATGTAGATGATATCCA 59.268 38.462 0.00 0.00 37.04 3.41
535 536 7.238305 ACCTGATGGAATGTAGATGATATCCAA 59.762 37.037 0.00 0.00 37.04 3.53
536 537 7.551974 CCTGATGGAATGTAGATGATATCCAAC 59.448 40.741 0.00 0.00 34.57 3.77
537 538 7.099120 TGATGGAATGTAGATGATATCCAACG 58.901 38.462 0.00 0.00 0.00 4.10
538 539 5.793817 TGGAATGTAGATGATATCCAACGG 58.206 41.667 0.00 0.00 0.00 4.44
539 540 4.631813 GGAATGTAGATGATATCCAACGGC 59.368 45.833 0.00 0.00 0.00 5.68
540 541 3.678056 TGTAGATGATATCCAACGGCC 57.322 47.619 0.00 0.00 0.00 6.13
541 542 2.969262 TGTAGATGATATCCAACGGCCA 59.031 45.455 2.24 0.00 0.00 5.36
542 543 2.847327 AGATGATATCCAACGGCCAG 57.153 50.000 2.24 0.00 0.00 4.85
543 544 2.050144 AGATGATATCCAACGGCCAGT 58.950 47.619 2.24 0.00 0.00 4.00
544 545 3.239449 AGATGATATCCAACGGCCAGTA 58.761 45.455 2.24 0.00 0.00 2.74
545 546 3.259374 AGATGATATCCAACGGCCAGTAG 59.741 47.826 2.24 0.00 0.00 2.57
546 547 2.394632 TGATATCCAACGGCCAGTAGT 58.605 47.619 2.24 0.00 0.00 2.73
547 548 2.102420 TGATATCCAACGGCCAGTAGTG 59.898 50.000 2.24 0.00 0.00 2.74
548 549 0.177141 TATCCAACGGCCAGTAGTGC 59.823 55.000 2.24 0.00 0.00 4.40
549 550 1.553690 ATCCAACGGCCAGTAGTGCT 61.554 55.000 2.24 0.00 0.00 4.40
550 551 1.741770 CCAACGGCCAGTAGTGCTC 60.742 63.158 2.24 0.00 0.00 4.26
551 552 2.094659 CAACGGCCAGTAGTGCTCG 61.095 63.158 2.24 8.56 0.00 5.03
552 553 3.296709 AACGGCCAGTAGTGCTCGG 62.297 63.158 2.24 5.38 0.00 4.63
553 554 3.449227 CGGCCAGTAGTGCTCGGA 61.449 66.667 2.24 0.00 0.00 4.55
554 555 2.786495 CGGCCAGTAGTGCTCGGAT 61.786 63.158 2.24 0.00 0.00 4.18
555 556 1.522569 GGCCAGTAGTGCTCGGATT 59.477 57.895 0.00 0.00 0.00 3.01
556 557 0.107654 GGCCAGTAGTGCTCGGATTT 60.108 55.000 0.00 0.00 0.00 2.17
557 558 1.009829 GCCAGTAGTGCTCGGATTTG 58.990 55.000 0.00 0.00 0.00 2.32
558 559 1.676014 GCCAGTAGTGCTCGGATTTGT 60.676 52.381 0.00 0.00 0.00 2.83
559 560 2.271800 CCAGTAGTGCTCGGATTTGTC 58.728 52.381 0.00 0.00 0.00 3.18
560 561 2.353704 CCAGTAGTGCTCGGATTTGTCA 60.354 50.000 0.00 0.00 0.00 3.58
561 562 3.525537 CAGTAGTGCTCGGATTTGTCAT 58.474 45.455 0.00 0.00 0.00 3.06
562 563 3.553511 CAGTAGTGCTCGGATTTGTCATC 59.446 47.826 0.00 0.00 0.00 2.92
563 564 3.449018 AGTAGTGCTCGGATTTGTCATCT 59.551 43.478 0.00 0.00 0.00 2.90
564 565 2.898705 AGTGCTCGGATTTGTCATCTC 58.101 47.619 0.00 0.00 0.00 2.75
565 566 2.499289 AGTGCTCGGATTTGTCATCTCT 59.501 45.455 0.00 0.00 0.00 3.10
566 567 2.606725 GTGCTCGGATTTGTCATCTCTG 59.393 50.000 0.00 0.00 0.00 3.35
567 568 2.234661 TGCTCGGATTTGTCATCTCTGT 59.765 45.455 0.00 0.00 0.00 3.41
568 569 3.447229 TGCTCGGATTTGTCATCTCTGTA 59.553 43.478 0.00 0.00 0.00 2.74
569 570 3.799420 GCTCGGATTTGTCATCTCTGTAC 59.201 47.826 0.00 0.00 0.00 2.90
570 571 4.363999 CTCGGATTTGTCATCTCTGTACC 58.636 47.826 0.00 0.00 0.00 3.34
571 572 3.116300 CGGATTTGTCATCTCTGTACCG 58.884 50.000 0.00 0.00 0.00 4.02
572 573 3.428999 CGGATTTGTCATCTCTGTACCGT 60.429 47.826 0.00 0.00 33.44 4.83
573 574 4.113354 GGATTTGTCATCTCTGTACCGTC 58.887 47.826 0.00 0.00 0.00 4.79
574 575 2.913777 TTGTCATCTCTGTACCGTCG 57.086 50.000 0.00 0.00 0.00 5.12
575 576 1.092348 TGTCATCTCTGTACCGTCGG 58.908 55.000 10.48 10.48 0.00 4.79
576 577 1.339342 TGTCATCTCTGTACCGTCGGA 60.339 52.381 20.51 0.00 0.00 4.55
577 578 1.948145 GTCATCTCTGTACCGTCGGAT 59.052 52.381 20.51 4.87 0.00 4.18
578 579 2.358267 GTCATCTCTGTACCGTCGGATT 59.642 50.000 20.51 0.00 0.00 3.01
579 580 2.357952 TCATCTCTGTACCGTCGGATTG 59.642 50.000 20.51 5.18 0.00 2.67
580 581 1.100510 TCTCTGTACCGTCGGATTGG 58.899 55.000 20.51 5.55 0.00 3.16
581 582 0.527817 CTCTGTACCGTCGGATTGGC 60.528 60.000 20.51 3.48 0.00 4.52
582 583 0.968901 TCTGTACCGTCGGATTGGCT 60.969 55.000 20.51 0.00 0.00 4.75
583 584 0.108329 CTGTACCGTCGGATTGGCTT 60.108 55.000 20.51 0.00 0.00 4.35
584 585 0.108520 TGTACCGTCGGATTGGCTTC 60.109 55.000 20.51 0.00 0.00 3.86
585 586 0.108520 GTACCGTCGGATTGGCTTCA 60.109 55.000 20.51 0.00 0.00 3.02
586 587 0.828022 TACCGTCGGATTGGCTTCAT 59.172 50.000 20.51 0.00 0.00 2.57
587 588 0.462047 ACCGTCGGATTGGCTTCATC 60.462 55.000 20.51 0.00 0.00 2.92
588 589 1.160329 CCGTCGGATTGGCTTCATCC 61.160 60.000 4.91 1.96 0.00 3.51
589 590 0.461870 CGTCGGATTGGCTTCATCCA 60.462 55.000 10.34 0.00 34.22 3.41
595 596 2.941210 TTGGCTTCATCCAACGACC 58.059 52.632 0.00 0.00 40.92 4.79
596 597 0.109532 TTGGCTTCATCCAACGACCA 59.890 50.000 0.00 0.00 40.92 4.02
597 598 0.109532 TGGCTTCATCCAACGACCAA 59.890 50.000 0.00 0.00 32.18 3.67
598 599 0.521735 GGCTTCATCCAACGACCAAC 59.478 55.000 0.00 0.00 0.00 3.77
599 600 1.523758 GCTTCATCCAACGACCAACT 58.476 50.000 0.00 0.00 0.00 3.16
600 601 1.880027 GCTTCATCCAACGACCAACTT 59.120 47.619 0.00 0.00 0.00 2.66
601 602 2.293399 GCTTCATCCAACGACCAACTTT 59.707 45.455 0.00 0.00 0.00 2.66
602 603 3.243401 GCTTCATCCAACGACCAACTTTT 60.243 43.478 0.00 0.00 0.00 2.27
603 604 4.023536 GCTTCATCCAACGACCAACTTTTA 60.024 41.667 0.00 0.00 0.00 1.52
604 605 5.506649 GCTTCATCCAACGACCAACTTTTAA 60.507 40.000 0.00 0.00 0.00 1.52
605 606 6.452494 TTCATCCAACGACCAACTTTTAAA 57.548 33.333 0.00 0.00 0.00 1.52
606 607 6.067263 TCATCCAACGACCAACTTTTAAAG 57.933 37.500 2.81 2.81 0.00 1.85
607 608 5.591067 TCATCCAACGACCAACTTTTAAAGT 59.409 36.000 4.30 4.30 45.46 2.66
628 629 8.589335 AAAGTTATTCGCACACTATATAGGTG 57.411 34.615 19.24 19.24 40.19 4.00
630 631 8.400184 AGTTATTCGCACACTATATAGGTGTA 57.600 34.615 22.04 13.69 44.75 2.90
631 632 9.021807 AGTTATTCGCACACTATATAGGTGTAT 57.978 33.333 22.04 17.28 44.75 2.29
634 635 8.803397 ATTCGCACACTATATAGGTGTATAGA 57.197 34.615 22.04 16.41 44.75 1.98
635 636 8.803397 TTCGCACACTATATAGGTGTATAGAT 57.197 34.615 22.04 0.00 44.75 1.98
636 637 9.895138 TTCGCACACTATATAGGTGTATAGATA 57.105 33.333 22.04 11.30 44.75 1.98
639 640 9.900710 GCACACTATATAGGTGTATAGATATGC 57.099 37.037 22.04 13.60 44.75 3.14
662 663 9.723601 ATGCACATTTAAGAAAACCATTAACAT 57.276 25.926 0.00 0.00 0.00 2.71
663 664 9.553064 TGCACATTTAAGAAAACCATTAACATT 57.447 25.926 0.00 0.00 0.00 2.71
755 756 9.081204 AGTTAAATAAAATGTTCGTTTACCCCT 57.919 29.630 0.00 0.00 0.00 4.79
775 776 2.331265 AAAAAGGCGAGACACAGGC 58.669 52.632 0.00 0.00 0.00 4.85
776 777 1.507141 AAAAAGGCGAGACACAGGCG 61.507 55.000 0.00 0.00 38.03 5.52
777 778 2.377628 AAAAGGCGAGACACAGGCGA 62.378 55.000 0.00 0.00 38.03 5.54
778 779 2.771763 AAAGGCGAGACACAGGCGAG 62.772 60.000 0.00 0.00 38.03 5.03
781 782 4.803426 CGAGACACAGGCGAGCCC 62.803 72.222 10.95 0.00 36.58 5.19
782 783 4.803426 GAGACACAGGCGAGCCCG 62.803 72.222 10.95 2.69 39.21 6.13
840 841 0.609131 ACCAGGCCTGAATCCAAACG 60.609 55.000 34.91 15.94 0.00 3.60
842 843 1.000896 AGGCCTGAATCCAAACGGG 60.001 57.895 3.11 0.00 38.37 5.28
844 845 3.603365 CCTGAATCCAAACGGGCC 58.397 61.111 0.00 0.00 36.21 5.80
847 848 2.750237 GAATCCAAACGGGCCGCT 60.750 61.111 28.71 12.24 36.21 5.52
851 852 1.101049 ATCCAAACGGGCCGCTATTG 61.101 55.000 28.71 25.99 36.21 1.90
855 856 4.856801 ACGGGCCGCTATTGCTGG 62.857 66.667 28.71 0.00 36.97 4.85
861 862 1.522092 CCGCTATTGCTGGACCAGA 59.478 57.895 26.25 5.41 35.80 3.86
874 875 2.283966 CCAGACCGGAGTGAGGGT 60.284 66.667 9.46 0.00 39.83 4.34
875 876 2.650116 CCAGACCGGAGTGAGGGTG 61.650 68.421 9.46 0.00 36.46 4.61
876 877 1.606601 CAGACCGGAGTGAGGGTGA 60.607 63.158 9.46 0.00 36.46 4.02
877 878 1.606889 AGACCGGAGTGAGGGTGAC 60.607 63.158 9.46 0.00 36.46 3.67
915 916 1.403116 GCCCATTTTACCCGTTTTCCG 60.403 52.381 0.00 0.00 0.00 4.30
941 942 0.963355 ACAGCGGAGACTCCTCTCAC 60.963 60.000 19.39 3.92 44.50 3.51
944 945 0.678366 GCGGAGACTCCTCTCACTCA 60.678 60.000 19.39 0.00 44.50 3.41
950 951 0.823769 ACTCCTCTCACTCACGCACA 60.824 55.000 0.00 0.00 0.00 4.57
970 971 1.198094 TCTCGCCACTCCCATTCCAA 61.198 55.000 0.00 0.00 0.00 3.53
1301 1320 1.893919 GCTCTCGGCCTCTTCAACCT 61.894 60.000 0.00 0.00 34.27 3.50
1328 1347 3.612247 GAGAAGAAGCAGGGCCGCA 62.612 63.158 19.61 0.00 0.00 5.69
1362 1381 3.407698 CACAACCTGCACCTACAACATA 58.592 45.455 0.00 0.00 0.00 2.29
1431 1450 3.302347 CTTCGGCCGCTTCCTGAGT 62.302 63.158 23.51 0.00 0.00 3.41
1463 1482 1.787847 CAAACCAGATCGTCGCCAC 59.212 57.895 0.00 0.00 0.00 5.01
1509 1528 0.247460 CAAGACGGACAGATGAGGCA 59.753 55.000 0.00 0.00 0.00 4.75
1524 1543 1.154150 GGCAATCAACGTGCTGCTC 60.154 57.895 0.00 0.00 41.88 4.26
1539 1558 2.103771 GCTGCTCCATAGGATGTCTGAA 59.896 50.000 0.00 0.00 0.00 3.02
1905 1938 5.249393 ACTTGGAACTCATTCATGTACTCCT 59.751 40.000 0.00 0.00 36.46 3.69
1921 1954 2.699846 ACTCCTTTTGCAAGCATGGAAA 59.300 40.909 4.40 4.40 43.95 3.13
2180 2213 3.004734 CCGAAATGCAGGAACAAAGAGTT 59.995 43.478 0.00 0.00 44.93 3.01
2185 2218 4.689612 TGCAGGAACAAAGAGTTAGTCT 57.310 40.909 0.00 0.00 41.51 3.24
2337 2370 7.398829 TCTAATTCAGGGCTTTTGTACACATA 58.601 34.615 0.00 0.00 0.00 2.29
2432 2466 6.147821 TGTTCTTCAGCTCAGTAATAAACAGC 59.852 38.462 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.898152 AACAAAGAAAAACAAAGGAATCCAATA 57.102 25.926 0.61 0.00 0.00 1.90
1 2 8.806429 AACAAAGAAAAACAAAGGAATCCAAT 57.194 26.923 0.61 0.00 0.00 3.16
4 5 9.378551 ACTAAACAAAGAAAAACAAAGGAATCC 57.621 29.630 0.00 0.00 0.00 3.01
8 9 9.765795 TGAAACTAAACAAAGAAAAACAAAGGA 57.234 25.926 0.00 0.00 0.00 3.36
13 14 9.495572 ACCAATGAAACTAAACAAAGAAAAACA 57.504 25.926 0.00 0.00 0.00 2.83
17 18 9.712305 TGAAACCAATGAAACTAAACAAAGAAA 57.288 25.926 0.00 0.00 0.00 2.52
18 19 9.883142 ATGAAACCAATGAAACTAAACAAAGAA 57.117 25.926 0.00 0.00 0.00 2.52
19 20 9.883142 AATGAAACCAATGAAACTAAACAAAGA 57.117 25.926 0.00 0.00 0.00 2.52
23 24 9.442047 ACAAAATGAAACCAATGAAACTAAACA 57.558 25.926 0.00 0.00 0.00 2.83
26 27 9.658799 TCAACAAAATGAAACCAATGAAACTAA 57.341 25.926 0.00 0.00 0.00 2.24
27 28 9.311916 CTCAACAAAATGAAACCAATGAAACTA 57.688 29.630 0.00 0.00 0.00 2.24
28 29 7.201635 GCTCAACAAAATGAAACCAATGAAACT 60.202 33.333 0.00 0.00 0.00 2.66
29 30 6.906678 GCTCAACAAAATGAAACCAATGAAAC 59.093 34.615 0.00 0.00 0.00 2.78
30 31 6.596888 TGCTCAACAAAATGAAACCAATGAAA 59.403 30.769 0.00 0.00 0.00 2.69
31 32 6.036953 GTGCTCAACAAAATGAAACCAATGAA 59.963 34.615 0.00 0.00 0.00 2.57
32 33 5.523188 GTGCTCAACAAAATGAAACCAATGA 59.477 36.000 0.00 0.00 0.00 2.57
33 34 5.293814 TGTGCTCAACAAAATGAAACCAATG 59.706 36.000 0.00 0.00 35.24 2.82
34 35 5.426504 TGTGCTCAACAAAATGAAACCAAT 58.573 33.333 0.00 0.00 35.24 3.16
35 36 4.825422 TGTGCTCAACAAAATGAAACCAA 58.175 34.783 0.00 0.00 35.24 3.67
36 37 4.462508 TGTGCTCAACAAAATGAAACCA 57.537 36.364 0.00 0.00 35.24 3.67
37 38 4.810491 ACATGTGCTCAACAAAATGAAACC 59.190 37.500 0.00 0.00 43.61 3.27
38 39 5.971895 ACATGTGCTCAACAAAATGAAAC 57.028 34.783 0.00 0.00 43.61 2.78
39 40 7.763528 AGTTTACATGTGCTCAACAAAATGAAA 59.236 29.630 9.11 0.00 43.61 2.69
40 41 7.264221 AGTTTACATGTGCTCAACAAAATGAA 58.736 30.769 9.11 0.00 43.61 2.57
41 42 6.804677 AGTTTACATGTGCTCAACAAAATGA 58.195 32.000 9.11 0.00 43.61 2.57
42 43 7.467557 AAGTTTACATGTGCTCAACAAAATG 57.532 32.000 9.11 0.00 43.61 2.32
43 44 8.491331 AAAAGTTTACATGTGCTCAACAAAAT 57.509 26.923 9.11 0.00 43.61 1.82
44 45 7.897575 AAAAGTTTACATGTGCTCAACAAAA 57.102 28.000 9.11 0.00 43.61 2.44
45 46 7.600375 TGAAAAAGTTTACATGTGCTCAACAAA 59.400 29.630 9.11 0.00 43.61 2.83
46 47 7.093354 TGAAAAAGTTTACATGTGCTCAACAA 58.907 30.769 9.11 0.00 43.61 2.83
47 48 6.625362 TGAAAAAGTTTACATGTGCTCAACA 58.375 32.000 9.11 1.58 44.79 3.33
48 49 6.751888 ACTGAAAAAGTTTACATGTGCTCAAC 59.248 34.615 9.11 6.30 34.57 3.18
49 50 6.862209 ACTGAAAAAGTTTACATGTGCTCAA 58.138 32.000 9.11 0.00 34.57 3.02
50 51 6.449635 ACTGAAAAAGTTTACATGTGCTCA 57.550 33.333 9.11 0.00 34.57 4.26
51 52 7.376072 GTGTACTGAAAAAGTTTACATGTGCTC 59.624 37.037 9.11 0.00 40.56 4.26
52 53 7.148154 TGTGTACTGAAAAAGTTTACATGTGCT 60.148 33.333 9.11 0.91 40.56 4.40
53 54 6.970043 TGTGTACTGAAAAAGTTTACATGTGC 59.030 34.615 9.11 0.00 40.56 4.57
54 55 9.515020 AATGTGTACTGAAAAAGTTTACATGTG 57.485 29.630 9.11 0.00 40.48 3.21
55 56 9.515020 CAATGTGTACTGAAAAAGTTTACATGT 57.485 29.630 2.69 2.69 40.48 3.21
56 57 9.515020 ACAATGTGTACTGAAAAAGTTTACATG 57.485 29.630 0.00 0.00 40.48 3.21
57 58 9.730420 GACAATGTGTACTGAAAAAGTTTACAT 57.270 29.630 0.00 0.00 41.87 2.29
58 59 8.185505 GGACAATGTGTACTGAAAAAGTTTACA 58.814 33.333 0.00 0.00 40.56 2.41
59 60 8.185505 TGGACAATGTGTACTGAAAAAGTTTAC 58.814 33.333 0.00 0.00 40.56 2.01
60 61 8.282455 TGGACAATGTGTACTGAAAAAGTTTA 57.718 30.769 0.00 0.00 40.56 2.01
61 62 7.164230 TGGACAATGTGTACTGAAAAAGTTT 57.836 32.000 0.00 0.00 40.56 2.66
62 63 6.767524 TGGACAATGTGTACTGAAAAAGTT 57.232 33.333 0.00 0.00 40.56 2.66
63 64 6.959639 ATGGACAATGTGTACTGAAAAAGT 57.040 33.333 0.00 0.00 43.40 2.66
64 65 8.647143 AAAATGGACAATGTGTACTGAAAAAG 57.353 30.769 0.00 0.00 30.83 2.27
65 66 9.092876 GAAAAATGGACAATGTGTACTGAAAAA 57.907 29.630 0.00 0.00 30.83 1.94
66 67 7.433719 CGAAAAATGGACAATGTGTACTGAAAA 59.566 33.333 0.00 0.00 30.83 2.29
67 68 6.915300 CGAAAAATGGACAATGTGTACTGAAA 59.085 34.615 0.00 0.00 30.83 2.69
68 69 6.038825 ACGAAAAATGGACAATGTGTACTGAA 59.961 34.615 0.00 0.00 30.83 3.02
69 70 5.529430 ACGAAAAATGGACAATGTGTACTGA 59.471 36.000 0.00 0.00 30.83 3.41
70 71 5.757886 ACGAAAAATGGACAATGTGTACTG 58.242 37.500 0.00 0.00 30.83 2.74
71 72 7.681939 ATACGAAAAATGGACAATGTGTACT 57.318 32.000 0.00 0.00 30.83 2.73
72 73 8.444715 TGTATACGAAAAATGGACAATGTGTAC 58.555 33.333 0.00 0.00 0.00 2.90
73 74 8.549338 TGTATACGAAAAATGGACAATGTGTA 57.451 30.769 0.00 0.00 0.00 2.90
74 75 7.441890 TGTATACGAAAAATGGACAATGTGT 57.558 32.000 0.00 0.00 0.00 3.72
75 76 8.180920 TGATGTATACGAAAAATGGACAATGTG 58.819 33.333 0.00 0.00 0.00 3.21
76 77 8.275015 TGATGTATACGAAAAATGGACAATGT 57.725 30.769 0.00 0.00 0.00 2.71
77 78 8.611757 TCTGATGTATACGAAAAATGGACAATG 58.388 33.333 0.00 0.00 0.00 2.82
78 79 8.731275 TCTGATGTATACGAAAAATGGACAAT 57.269 30.769 0.00 0.00 0.00 2.71
79 80 8.554835 TTCTGATGTATACGAAAAATGGACAA 57.445 30.769 0.00 0.00 0.00 3.18
80 81 8.447833 GTTTCTGATGTATACGAAAAATGGACA 58.552 33.333 5.55 0.00 0.00 4.02
81 82 8.447833 TGTTTCTGATGTATACGAAAAATGGAC 58.552 33.333 5.55 0.00 0.00 4.02
82 83 8.554835 TGTTTCTGATGTATACGAAAAATGGA 57.445 30.769 5.55 0.00 0.00 3.41
118 119 9.263538 TGTTTCTAATGTATACGAAAAGTGTGT 57.736 29.630 5.55 0.00 0.00 3.72
140 141 9.831737 CGCGTACCTTACTAGTATAATATGTTT 57.168 33.333 2.79 0.00 0.00 2.83
141 142 9.003658 ACGCGTACCTTACTAGTATAATATGTT 57.996 33.333 11.67 0.00 0.00 2.71
142 143 8.446273 CACGCGTACCTTACTAGTATAATATGT 58.554 37.037 13.44 0.00 0.00 2.29
143 144 7.427606 GCACGCGTACCTTACTAGTATAATATG 59.572 40.741 13.44 3.59 0.00 1.78
144 145 7.119699 TGCACGCGTACCTTACTAGTATAATAT 59.880 37.037 13.44 0.00 0.00 1.28
145 146 6.426633 TGCACGCGTACCTTACTAGTATAATA 59.573 38.462 13.44 0.00 0.00 0.98
146 147 5.239306 TGCACGCGTACCTTACTAGTATAAT 59.761 40.000 13.44 0.00 0.00 1.28
147 148 4.574421 TGCACGCGTACCTTACTAGTATAA 59.426 41.667 13.44 0.00 0.00 0.98
148 149 4.126437 TGCACGCGTACCTTACTAGTATA 58.874 43.478 13.44 0.00 0.00 1.47
149 150 2.945008 TGCACGCGTACCTTACTAGTAT 59.055 45.455 13.44 0.00 0.00 2.12
150 151 2.355197 TGCACGCGTACCTTACTAGTA 58.645 47.619 13.44 0.00 0.00 1.82
151 152 1.167851 TGCACGCGTACCTTACTAGT 58.832 50.000 13.44 0.00 0.00 2.57
152 153 2.486951 ATGCACGCGTACCTTACTAG 57.513 50.000 13.44 0.00 0.00 2.57
153 154 2.945447 AATGCACGCGTACCTTACTA 57.055 45.000 13.44 0.00 0.00 1.82
154 155 2.094597 TGTAATGCACGCGTACCTTACT 60.095 45.455 26.97 8.68 0.00 2.24
155 156 2.261345 TGTAATGCACGCGTACCTTAC 58.739 47.619 22.96 22.96 0.00 2.34
156 157 2.651135 TGTAATGCACGCGTACCTTA 57.349 45.000 13.44 7.34 0.00 2.69
157 158 1.730064 CTTGTAATGCACGCGTACCTT 59.270 47.619 13.44 8.53 0.00 3.50
158 159 1.355971 CTTGTAATGCACGCGTACCT 58.644 50.000 13.44 0.00 0.00 3.08
159 160 0.247537 GCTTGTAATGCACGCGTACC 60.248 55.000 13.44 6.81 36.91 3.34
160 161 0.440758 TGCTTGTAATGCACGCGTAC 59.559 50.000 13.44 7.10 44.25 3.67
161 162 2.828933 TGCTTGTAATGCACGCGTA 58.171 47.368 13.44 0.00 44.25 4.42
162 163 3.649096 TGCTTGTAATGCACGCGT 58.351 50.000 5.58 5.58 44.25 6.01
168 169 5.002464 ACCAAATCTCATGCTTGTAATGC 57.998 39.130 0.00 0.00 37.54 3.56
169 170 6.974622 GGTTACCAAATCTCATGCTTGTAATG 59.025 38.462 0.00 0.00 0.00 1.90
170 171 6.663093 TGGTTACCAAATCTCATGCTTGTAAT 59.337 34.615 0.00 0.00 0.00 1.89
171 172 6.007076 TGGTTACCAAATCTCATGCTTGTAA 58.993 36.000 0.00 0.00 0.00 2.41
172 173 5.565509 TGGTTACCAAATCTCATGCTTGTA 58.434 37.500 0.00 0.00 0.00 2.41
173 174 4.406456 TGGTTACCAAATCTCATGCTTGT 58.594 39.130 0.00 0.00 0.00 3.16
174 175 5.389859 TTGGTTACCAAATCTCATGCTTG 57.610 39.130 15.17 0.00 40.92 4.01
221 222 9.948964 TGCATATATGACTCAAAGCTTACATAT 57.051 29.630 17.10 12.22 35.84 1.78
222 223 9.948964 ATGCATATATGACTCAAAGCTTACATA 57.051 29.630 17.10 6.11 0.00 2.29
223 224 8.727910 CATGCATATATGACTCAAAGCTTACAT 58.272 33.333 17.10 4.08 0.00 2.29
224 225 7.933033 TCATGCATATATGACTCAAAGCTTACA 59.067 33.333 17.10 0.53 32.39 2.41
225 226 8.315391 TCATGCATATATGACTCAAAGCTTAC 57.685 34.615 17.10 0.00 32.39 2.34
226 227 8.943002 CATCATGCATATATGACTCAAAGCTTA 58.057 33.333 17.10 0.00 39.68 3.09
227 228 7.447545 ACATCATGCATATATGACTCAAAGCTT 59.552 33.333 21.83 0.00 39.68 3.74
228 229 6.940867 ACATCATGCATATATGACTCAAAGCT 59.059 34.615 21.83 0.00 39.68 3.74
229 230 7.142306 ACATCATGCATATATGACTCAAAGC 57.858 36.000 21.83 0.00 39.68 3.51
230 231 9.649167 TCTACATCATGCATATATGACTCAAAG 57.351 33.333 21.83 11.71 39.68 2.77
266 267 9.713684 TTTTGGATGGGATCAACTATAAGAATT 57.286 29.630 0.00 0.00 0.00 2.17
267 268 9.887862 ATTTTGGATGGGATCAACTATAAGAAT 57.112 29.630 0.00 0.00 0.00 2.40
268 269 9.354673 GATTTTGGATGGGATCAACTATAAGAA 57.645 33.333 0.00 0.00 0.00 2.52
269 270 8.501904 TGATTTTGGATGGGATCAACTATAAGA 58.498 33.333 0.00 0.00 0.00 2.10
270 271 8.696043 TGATTTTGGATGGGATCAACTATAAG 57.304 34.615 0.00 0.00 0.00 1.73
271 272 9.659135 ATTGATTTTGGATGGGATCAACTATAA 57.341 29.630 0.00 0.00 40.21 0.98
272 273 9.659135 AATTGATTTTGGATGGGATCAACTATA 57.341 29.630 0.00 0.00 40.21 1.31
273 274 8.557304 AATTGATTTTGGATGGGATCAACTAT 57.443 30.769 0.00 0.00 40.21 2.12
274 275 7.976414 AATTGATTTTGGATGGGATCAACTA 57.024 32.000 0.00 0.00 40.21 2.24
275 276 6.879367 AATTGATTTTGGATGGGATCAACT 57.121 33.333 0.00 0.00 40.21 3.16
276 277 7.785033 ACTAATTGATTTTGGATGGGATCAAC 58.215 34.615 0.00 0.00 40.21 3.18
277 278 7.976414 ACTAATTGATTTTGGATGGGATCAA 57.024 32.000 0.00 0.00 41.24 2.57
278 279 7.976414 AACTAATTGATTTTGGATGGGATCA 57.024 32.000 0.00 0.00 0.00 2.92
318 319 9.894783 CAATGCACAATTCCATGAATTTTAAAA 57.105 25.926 2.51 2.51 39.82 1.52
319 320 9.064706 ACAATGCACAATTCCATGAATTTTAAA 57.935 25.926 0.00 0.00 39.82 1.52
320 321 8.618702 ACAATGCACAATTCCATGAATTTTAA 57.381 26.923 0.00 0.00 39.82 1.52
321 322 9.716531 TTACAATGCACAATTCCATGAATTTTA 57.283 25.926 0.00 0.00 39.82 1.52
322 323 8.618702 TTACAATGCACAATTCCATGAATTTT 57.381 26.923 0.00 0.00 39.82 1.82
323 324 8.618702 TTTACAATGCACAATTCCATGAATTT 57.381 26.923 0.00 0.00 39.82 1.82
324 325 8.095792 TCTTTACAATGCACAATTCCATGAATT 58.904 29.630 0.00 0.00 42.14 2.17
325 326 7.613585 TCTTTACAATGCACAATTCCATGAAT 58.386 30.769 0.00 0.00 33.25 2.57
326 327 6.990798 TCTTTACAATGCACAATTCCATGAA 58.009 32.000 0.00 0.00 0.00 2.57
327 328 6.587206 TCTTTACAATGCACAATTCCATGA 57.413 33.333 0.00 0.00 0.00 3.07
328 329 8.929827 TTATCTTTACAATGCACAATTCCATG 57.070 30.769 0.00 0.00 0.00 3.66
329 330 9.941325 TTTTATCTTTACAATGCACAATTCCAT 57.059 25.926 0.00 0.00 0.00 3.41
330 331 9.770097 TTTTTATCTTTACAATGCACAATTCCA 57.230 25.926 0.00 0.00 0.00 3.53
379 380 9.942850 CCATATCTTATTTGTCCAAACCTTTTT 57.057 29.630 0.00 0.00 32.51 1.94
380 381 9.320295 TCCATATCTTATTTGTCCAAACCTTTT 57.680 29.630 0.00 0.00 32.51 2.27
381 382 8.893563 TCCATATCTTATTTGTCCAAACCTTT 57.106 30.769 0.00 0.00 32.51 3.11
382 383 8.893563 TTCCATATCTTATTTGTCCAAACCTT 57.106 30.769 0.00 0.00 32.51 3.50
383 384 8.336235 TCTTCCATATCTTATTTGTCCAAACCT 58.664 33.333 0.00 0.00 32.51 3.50
384 385 8.519799 TCTTCCATATCTTATTTGTCCAAACC 57.480 34.615 0.00 0.00 32.51 3.27
402 403 9.218525 TCTCCTTTGTTCTCTATAATCTTCCAT 57.781 33.333 0.00 0.00 0.00 3.41
403 404 8.609617 TCTCCTTTGTTCTCTATAATCTTCCA 57.390 34.615 0.00 0.00 0.00 3.53
404 405 9.541143 CTTCTCCTTTGTTCTCTATAATCTTCC 57.459 37.037 0.00 0.00 0.00 3.46
406 407 9.883142 CACTTCTCCTTTGTTCTCTATAATCTT 57.117 33.333 0.00 0.00 0.00 2.40
407 408 7.984617 GCACTTCTCCTTTGTTCTCTATAATCT 59.015 37.037 0.00 0.00 0.00 2.40
408 409 7.984617 AGCACTTCTCCTTTGTTCTCTATAATC 59.015 37.037 0.00 0.00 0.00 1.75
409 410 7.856415 AGCACTTCTCCTTTGTTCTCTATAAT 58.144 34.615 0.00 0.00 0.00 1.28
410 411 7.246171 AGCACTTCTCCTTTGTTCTCTATAA 57.754 36.000 0.00 0.00 0.00 0.98
411 412 6.859112 AGCACTTCTCCTTTGTTCTCTATA 57.141 37.500 0.00 0.00 0.00 1.31
412 413 5.753721 AGCACTTCTCCTTTGTTCTCTAT 57.246 39.130 0.00 0.00 0.00 1.98
413 414 5.163301 ACAAGCACTTCTCCTTTGTTCTCTA 60.163 40.000 0.00 0.00 0.00 2.43
414 415 4.133078 CAAGCACTTCTCCTTTGTTCTCT 58.867 43.478 0.00 0.00 0.00 3.10
415 416 3.879892 ACAAGCACTTCTCCTTTGTTCTC 59.120 43.478 0.00 0.00 0.00 2.87
416 417 3.629398 CACAAGCACTTCTCCTTTGTTCT 59.371 43.478 0.00 0.00 0.00 3.01
417 418 3.378427 ACACAAGCACTTCTCCTTTGTTC 59.622 43.478 0.00 0.00 0.00 3.18
418 419 3.129287 CACACAAGCACTTCTCCTTTGTT 59.871 43.478 0.00 0.00 0.00 2.83
419 420 2.684881 CACACAAGCACTTCTCCTTTGT 59.315 45.455 0.00 0.00 0.00 2.83
420 421 2.684881 ACACACAAGCACTTCTCCTTTG 59.315 45.455 0.00 0.00 0.00 2.77
421 422 3.004752 ACACACAAGCACTTCTCCTTT 57.995 42.857 0.00 0.00 0.00 3.11
422 423 2.717639 ACACACAAGCACTTCTCCTT 57.282 45.000 0.00 0.00 0.00 3.36
423 424 2.684881 CAAACACACAAGCACTTCTCCT 59.315 45.455 0.00 0.00 0.00 3.69
424 425 2.682856 TCAAACACACAAGCACTTCTCC 59.317 45.455 0.00 0.00 0.00 3.71
425 426 3.242870 CCTCAAACACACAAGCACTTCTC 60.243 47.826 0.00 0.00 0.00 2.87
426 427 2.684881 CCTCAAACACACAAGCACTTCT 59.315 45.455 0.00 0.00 0.00 2.85
427 428 2.423538 ACCTCAAACACACAAGCACTTC 59.576 45.455 0.00 0.00 0.00 3.01
428 429 2.446435 ACCTCAAACACACAAGCACTT 58.554 42.857 0.00 0.00 0.00 3.16
429 430 2.128771 ACCTCAAACACACAAGCACT 57.871 45.000 0.00 0.00 0.00 4.40
430 431 2.923020 CAAACCTCAAACACACAAGCAC 59.077 45.455 0.00 0.00 0.00 4.40
431 432 2.560542 ACAAACCTCAAACACACAAGCA 59.439 40.909 0.00 0.00 0.00 3.91
432 433 2.923020 CACAAACCTCAAACACACAAGC 59.077 45.455 0.00 0.00 0.00 4.01
433 434 2.923020 GCACAAACCTCAAACACACAAG 59.077 45.455 0.00 0.00 0.00 3.16
434 435 2.297315 TGCACAAACCTCAAACACACAA 59.703 40.909 0.00 0.00 0.00 3.33
435 436 1.889170 TGCACAAACCTCAAACACACA 59.111 42.857 0.00 0.00 0.00 3.72
436 437 2.645730 TGCACAAACCTCAAACACAC 57.354 45.000 0.00 0.00 0.00 3.82
437 438 3.883830 AATGCACAAACCTCAAACACA 57.116 38.095 0.00 0.00 0.00 3.72
438 439 4.150451 GCATAATGCACAAACCTCAAACAC 59.850 41.667 0.00 0.00 44.26 3.32
439 440 4.305769 GCATAATGCACAAACCTCAAACA 58.694 39.130 0.00 0.00 44.26 2.83
440 441 4.908966 GCATAATGCACAAACCTCAAAC 57.091 40.909 0.00 0.00 44.26 2.93
460 461 5.629079 AGACTGCATGGTTAAACTTAAGC 57.371 39.130 1.29 4.78 40.52 3.09
461 462 7.440523 AGAAGACTGCATGGTTAAACTTAAG 57.559 36.000 0.00 0.00 0.00 1.85
462 463 8.372459 TCTAGAAGACTGCATGGTTAAACTTAA 58.628 33.333 0.00 0.00 0.00 1.85
463 464 7.903145 TCTAGAAGACTGCATGGTTAAACTTA 58.097 34.615 0.00 0.00 0.00 2.24
464 465 6.769512 TCTAGAAGACTGCATGGTTAAACTT 58.230 36.000 0.00 0.00 0.00 2.66
465 466 6.360370 TCTAGAAGACTGCATGGTTAAACT 57.640 37.500 0.00 0.00 0.00 2.66
466 467 7.617041 AATCTAGAAGACTGCATGGTTAAAC 57.383 36.000 0.00 0.00 0.00 2.01
468 469 9.982651 GTATAATCTAGAAGACTGCATGGTTAA 57.017 33.333 0.00 0.00 0.00 2.01
469 470 9.143155 TGTATAATCTAGAAGACTGCATGGTTA 57.857 33.333 0.00 0.00 0.00 2.85
470 471 8.023021 TGTATAATCTAGAAGACTGCATGGTT 57.977 34.615 0.00 0.00 0.00 3.67
471 472 7.603180 TGTATAATCTAGAAGACTGCATGGT 57.397 36.000 0.00 0.00 0.00 3.55
472 473 7.064371 GCATGTATAATCTAGAAGACTGCATGG 59.936 40.741 18.46 8.27 31.55 3.66
473 474 7.601508 TGCATGTATAATCTAGAAGACTGCATG 59.398 37.037 15.34 15.34 32.75 4.06
474 475 7.674120 TGCATGTATAATCTAGAAGACTGCAT 58.326 34.615 0.00 0.00 30.54 3.96
475 476 7.054491 TGCATGTATAATCTAGAAGACTGCA 57.946 36.000 0.00 4.70 32.84 4.41
476 477 7.601886 ACATGCATGTATAATCTAGAAGACTGC 59.398 37.037 30.50 2.28 39.68 4.40
477 478 8.923683 CACATGCATGTATAATCTAGAAGACTG 58.076 37.037 30.92 9.54 39.39 3.51
478 479 8.093307 CCACATGCATGTATAATCTAGAAGACT 58.907 37.037 30.92 0.10 39.39 3.24
479 480 7.148507 GCCACATGCATGTATAATCTAGAAGAC 60.149 40.741 30.92 4.08 39.39 3.01
480 481 6.875726 GCCACATGCATGTATAATCTAGAAGA 59.124 38.462 30.92 0.00 39.39 2.87
481 482 7.069852 GCCACATGCATGTATAATCTAGAAG 57.930 40.000 30.92 14.17 39.39 2.85
497 498 0.454600 CATCAGGTTCTGCCACATGC 59.545 55.000 0.00 0.00 40.61 4.06
498 499 1.100510 CCATCAGGTTCTGCCACATG 58.899 55.000 0.00 0.00 40.61 3.21
499 500 0.994247 TCCATCAGGTTCTGCCACAT 59.006 50.000 0.00 0.00 40.61 3.21
500 501 0.770499 TTCCATCAGGTTCTGCCACA 59.230 50.000 0.00 0.00 40.61 4.17
501 502 1.747355 CATTCCATCAGGTTCTGCCAC 59.253 52.381 0.00 0.00 40.61 5.01
502 503 1.355381 ACATTCCATCAGGTTCTGCCA 59.645 47.619 0.00 0.00 40.61 4.92
503 504 2.134789 ACATTCCATCAGGTTCTGCC 57.865 50.000 0.00 0.00 35.89 4.85
504 505 4.142609 TCTACATTCCATCAGGTTCTGC 57.857 45.455 0.00 0.00 35.89 4.26
505 506 5.922053 TCATCTACATTCCATCAGGTTCTG 58.078 41.667 0.00 0.00 35.89 3.02
506 507 6.760440 ATCATCTACATTCCATCAGGTTCT 57.240 37.500 0.00 0.00 35.89 3.01
507 508 7.768120 GGATATCATCTACATTCCATCAGGTTC 59.232 40.741 4.83 0.00 35.89 3.62
508 509 7.238305 TGGATATCATCTACATTCCATCAGGTT 59.762 37.037 4.83 0.00 35.89 3.50
509 510 6.732390 TGGATATCATCTACATTCCATCAGGT 59.268 38.462 4.83 0.00 35.89 4.00
510 511 7.191593 TGGATATCATCTACATTCCATCAGG 57.808 40.000 4.83 0.00 0.00 3.86
511 512 7.277319 CGTTGGATATCATCTACATTCCATCAG 59.723 40.741 4.83 0.00 33.53 2.90
512 513 7.099120 CGTTGGATATCATCTACATTCCATCA 58.901 38.462 4.83 0.00 33.53 3.07
513 514 6.536582 CCGTTGGATATCATCTACATTCCATC 59.463 42.308 4.83 0.00 33.53 3.51
514 515 6.409704 CCGTTGGATATCATCTACATTCCAT 58.590 40.000 4.83 0.00 33.53 3.41
515 516 5.793817 CCGTTGGATATCATCTACATTCCA 58.206 41.667 4.83 0.00 0.00 3.53
516 517 4.631813 GCCGTTGGATATCATCTACATTCC 59.368 45.833 4.83 0.00 0.00 3.01
517 518 4.631813 GGCCGTTGGATATCATCTACATTC 59.368 45.833 4.83 0.00 0.00 2.67
518 519 4.041567 TGGCCGTTGGATATCATCTACATT 59.958 41.667 4.83 0.00 0.00 2.71
519 520 3.582647 TGGCCGTTGGATATCATCTACAT 59.417 43.478 4.83 0.00 0.00 2.29
520 521 2.969262 TGGCCGTTGGATATCATCTACA 59.031 45.455 4.83 0.00 0.00 2.74
521 522 3.006967 ACTGGCCGTTGGATATCATCTAC 59.993 47.826 4.83 0.00 0.00 2.59
522 523 3.239449 ACTGGCCGTTGGATATCATCTA 58.761 45.455 4.83 0.00 0.00 1.98
523 524 2.050144 ACTGGCCGTTGGATATCATCT 58.950 47.619 4.83 0.00 0.00 2.90
524 525 2.550830 ACTGGCCGTTGGATATCATC 57.449 50.000 4.83 0.00 0.00 2.92
525 526 2.972713 ACTACTGGCCGTTGGATATCAT 59.027 45.455 4.83 0.00 0.00 2.45
526 527 2.102420 CACTACTGGCCGTTGGATATCA 59.898 50.000 4.83 0.00 0.00 2.15
527 528 2.755650 CACTACTGGCCGTTGGATATC 58.244 52.381 0.00 0.00 0.00 1.63
528 529 1.202651 GCACTACTGGCCGTTGGATAT 60.203 52.381 0.00 0.00 0.00 1.63
529 530 0.177141 GCACTACTGGCCGTTGGATA 59.823 55.000 0.00 0.00 0.00 2.59
530 531 1.078426 GCACTACTGGCCGTTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
531 532 2.167398 GAGCACTACTGGCCGTTGGA 62.167 60.000 0.00 0.00 0.00 3.53
532 533 1.741770 GAGCACTACTGGCCGTTGG 60.742 63.158 0.00 0.00 0.00 3.77
533 534 2.094659 CGAGCACTACTGGCCGTTG 61.095 63.158 0.00 2.87 0.00 4.10
534 535 2.261671 CGAGCACTACTGGCCGTT 59.738 61.111 0.00 0.00 0.00 4.44
535 536 3.760035 CCGAGCACTACTGGCCGT 61.760 66.667 0.00 1.25 0.00 5.68
536 537 2.298158 AATCCGAGCACTACTGGCCG 62.298 60.000 0.00 0.00 0.00 6.13
537 538 0.107654 AAATCCGAGCACTACTGGCC 60.108 55.000 0.00 0.00 0.00 5.36
538 539 1.009829 CAAATCCGAGCACTACTGGC 58.990 55.000 0.00 0.00 0.00 4.85
539 540 2.271800 GACAAATCCGAGCACTACTGG 58.728 52.381 0.00 0.00 0.00 4.00
540 541 2.959516 TGACAAATCCGAGCACTACTG 58.040 47.619 0.00 0.00 0.00 2.74
541 542 3.449018 AGATGACAAATCCGAGCACTACT 59.551 43.478 0.00 0.00 0.00 2.57
542 543 3.786635 AGATGACAAATCCGAGCACTAC 58.213 45.455 0.00 0.00 0.00 2.73
543 544 3.701542 AGAGATGACAAATCCGAGCACTA 59.298 43.478 0.00 0.00 0.00 2.74
544 545 2.499289 AGAGATGACAAATCCGAGCACT 59.501 45.455 0.00 0.00 0.00 4.40
545 546 2.606725 CAGAGATGACAAATCCGAGCAC 59.393 50.000 0.00 0.00 0.00 4.40
546 547 2.234661 ACAGAGATGACAAATCCGAGCA 59.765 45.455 0.00 0.00 0.00 4.26
547 548 2.898705 ACAGAGATGACAAATCCGAGC 58.101 47.619 0.00 0.00 0.00 5.03
548 549 4.363999 GGTACAGAGATGACAAATCCGAG 58.636 47.826 0.00 0.00 0.00 4.63
549 550 3.181490 CGGTACAGAGATGACAAATCCGA 60.181 47.826 0.00 0.00 36.97 4.55
550 551 3.116300 CGGTACAGAGATGACAAATCCG 58.884 50.000 0.00 0.00 0.00 4.18
551 552 4.113354 GACGGTACAGAGATGACAAATCC 58.887 47.826 0.00 0.00 0.00 3.01
552 553 3.791887 CGACGGTACAGAGATGACAAATC 59.208 47.826 0.00 0.00 0.00 2.17
553 554 3.428999 CCGACGGTACAGAGATGACAAAT 60.429 47.826 5.48 0.00 0.00 2.32
554 555 2.094906 CCGACGGTACAGAGATGACAAA 60.095 50.000 5.48 0.00 0.00 2.83
555 556 1.471287 CCGACGGTACAGAGATGACAA 59.529 52.381 5.48 0.00 0.00 3.18
556 557 1.092348 CCGACGGTACAGAGATGACA 58.908 55.000 5.48 0.00 0.00 3.58
557 558 1.376543 TCCGACGGTACAGAGATGAC 58.623 55.000 14.79 0.00 0.00 3.06
558 559 2.343484 ATCCGACGGTACAGAGATGA 57.657 50.000 14.79 0.00 0.00 2.92
559 560 2.543861 CCAATCCGACGGTACAGAGATG 60.544 54.545 14.79 2.93 0.00 2.90
560 561 1.681793 CCAATCCGACGGTACAGAGAT 59.318 52.381 14.79 0.00 0.00 2.75
561 562 1.100510 CCAATCCGACGGTACAGAGA 58.899 55.000 14.79 0.00 0.00 3.10
562 563 0.527817 GCCAATCCGACGGTACAGAG 60.528 60.000 14.79 0.57 0.00 3.35
563 564 0.968901 AGCCAATCCGACGGTACAGA 60.969 55.000 14.79 0.00 0.00 3.41
564 565 0.108329 AAGCCAATCCGACGGTACAG 60.108 55.000 14.79 3.14 0.00 2.74
565 566 0.108520 GAAGCCAATCCGACGGTACA 60.109 55.000 14.79 0.00 0.00 2.90
566 567 0.108520 TGAAGCCAATCCGACGGTAC 60.109 55.000 14.79 0.12 0.00 3.34
567 568 0.828022 ATGAAGCCAATCCGACGGTA 59.172 50.000 14.79 0.72 0.00 4.02
568 569 0.462047 GATGAAGCCAATCCGACGGT 60.462 55.000 14.79 0.00 0.00 4.83
569 570 1.160329 GGATGAAGCCAATCCGACGG 61.160 60.000 7.84 7.84 0.00 4.79
570 571 0.461870 TGGATGAAGCCAATCCGACG 60.462 55.000 5.67 0.00 37.29 5.12
571 572 1.750193 TTGGATGAAGCCAATCCGAC 58.250 50.000 0.00 0.00 42.75 4.79
577 578 0.109532 TGGTCGTTGGATGAAGCCAA 59.890 50.000 0.00 0.00 45.28 4.52
578 579 0.109532 TTGGTCGTTGGATGAAGCCA 59.890 50.000 0.00 0.00 35.78 4.75
579 580 0.521735 GTTGGTCGTTGGATGAAGCC 59.478 55.000 0.00 0.00 0.00 4.35
580 581 1.523758 AGTTGGTCGTTGGATGAAGC 58.476 50.000 0.00 0.00 0.00 3.86
581 582 4.568152 AAAAGTTGGTCGTTGGATGAAG 57.432 40.909 0.00 0.00 0.00 3.02
582 583 6.095720 ACTTTAAAAGTTGGTCGTTGGATGAA 59.904 34.615 0.00 0.00 39.04 2.57
583 584 5.591067 ACTTTAAAAGTTGGTCGTTGGATGA 59.409 36.000 0.00 0.00 39.04 2.92
584 585 5.827666 ACTTTAAAAGTTGGTCGTTGGATG 58.172 37.500 0.00 0.00 39.04 3.51
602 603 9.687210 CACCTATATAGTGTGCGAATAACTTTA 57.313 33.333 14.51 0.00 0.00 1.85
603 604 8.202137 ACACCTATATAGTGTGCGAATAACTTT 58.798 33.333 21.64 5.35 46.43 2.66
604 605 7.723324 ACACCTATATAGTGTGCGAATAACTT 58.277 34.615 21.64 5.83 46.43 2.66
605 606 7.286215 ACACCTATATAGTGTGCGAATAACT 57.714 36.000 21.64 6.32 46.43 2.24
636 637 9.723601 ATGTTAATGGTTTTCTTAAATGTGCAT 57.276 25.926 0.00 0.00 0.00 3.96
637 638 9.553064 AATGTTAATGGTTTTCTTAAATGTGCA 57.447 25.926 0.00 0.00 0.00 4.57
729 730 9.081204 AGGGGTAAACGAACATTTTATTTAACT 57.919 29.630 0.00 0.00 0.00 2.24
757 758 1.507141 CGCCTGTGTCTCGCCTTTTT 61.507 55.000 0.00 0.00 0.00 1.94
758 759 1.961277 CGCCTGTGTCTCGCCTTTT 60.961 57.895 0.00 0.00 0.00 2.27
759 760 2.357517 CGCCTGTGTCTCGCCTTT 60.358 61.111 0.00 0.00 0.00 3.11
760 761 3.288308 CTCGCCTGTGTCTCGCCTT 62.288 63.158 0.00 0.00 0.00 4.35
761 762 3.753434 CTCGCCTGTGTCTCGCCT 61.753 66.667 0.00 0.00 0.00 5.52
764 765 4.803426 GGGCTCGCCTGTGTCTCG 62.803 72.222 8.00 0.00 36.10 4.04
765 766 4.803426 CGGGCTCGCCTGTGTCTC 62.803 72.222 8.62 0.00 37.68 3.36
806 807 4.047059 GGTCCAACGACGGAGCGA 62.047 66.667 10.44 0.00 43.22 4.93
809 810 2.261671 CCTGGTCCAACGACGGAG 59.738 66.667 0.00 0.00 40.17 4.63
812 813 4.003788 AGGCCTGGTCCAACGACG 62.004 66.667 3.11 0.00 40.17 5.12
847 848 0.616395 TCCGGTCTGGTCCAGCAATA 60.616 55.000 14.64 0.00 39.52 1.90
851 852 2.997897 ACTCCGGTCTGGTCCAGC 60.998 66.667 14.64 9.20 39.52 4.85
855 856 2.352032 CCCTCACTCCGGTCTGGTC 61.352 68.421 0.00 0.00 39.52 4.02
861 862 2.603776 GGTCACCCTCACTCCGGT 60.604 66.667 0.00 0.00 0.00 5.28
878 879 0.872388 GGCTTCCCACTTAACACGTG 59.128 55.000 15.48 15.48 0.00 4.49
879 880 0.250597 GGGCTTCCCACTTAACACGT 60.251 55.000 0.00 0.00 44.65 4.49
880 881 2.551644 GGGCTTCCCACTTAACACG 58.448 57.895 0.00 0.00 44.65 4.49
890 891 0.323999 ACGGGTAAAATGGGCTTCCC 60.324 55.000 0.00 0.00 45.71 3.97
891 892 1.552578 AACGGGTAAAATGGGCTTCC 58.447 50.000 0.00 0.00 0.00 3.46
892 893 3.581755 GAAAACGGGTAAAATGGGCTTC 58.418 45.455 0.00 0.00 0.00 3.86
893 894 2.300723 GGAAAACGGGTAAAATGGGCTT 59.699 45.455 0.00 0.00 0.00 4.35
915 916 1.672145 GGAGTCTCCGCTGTACCAAAC 60.672 57.143 2.28 0.00 0.00 2.93
941 942 2.125952 TGGCGAGATGTGCGTGAG 60.126 61.111 0.00 0.00 0.00 3.51
944 945 2.125912 GAGTGGCGAGATGTGCGT 60.126 61.111 0.00 0.00 0.00 5.24
950 951 0.982852 TGGAATGGGAGTGGCGAGAT 60.983 55.000 0.00 0.00 0.00 2.75
970 971 3.036084 CCTTCGTGTTCGCGCTGT 61.036 61.111 5.56 0.00 36.96 4.40
1047 1060 4.273257 GAGGAGGAGTAGCGGCGC 62.273 72.222 26.86 26.86 0.00 6.53
1146 1165 2.280797 TGGTGTGCGTCTTCAGGC 60.281 61.111 0.00 0.00 0.00 4.85
1362 1381 1.376942 GCAGCAGCTGTCCATGAGT 60.377 57.895 23.60 0.00 37.91 3.41
1463 1482 2.190488 GAGGCACTTGAGGAGGGTGG 62.190 65.000 0.00 0.00 41.55 4.61
1509 1528 2.283298 CTATGGAGCAGCACGTTGATT 58.717 47.619 0.00 0.00 0.00 2.57
1524 1543 4.607293 TCCGAATTCAGACATCCTATGG 57.393 45.455 6.22 0.00 33.60 2.74
1539 1558 3.206150 GACATTAGGCACACATCCGAAT 58.794 45.455 0.00 0.00 30.57 3.34
1905 1938 3.276857 TGCTTTTTCCATGCTTGCAAAA 58.723 36.364 0.00 0.00 0.00 2.44
1921 1954 4.332428 AATTCTGCAGCTTCTTTGCTTT 57.668 36.364 9.47 0.00 41.98 3.51
1959 1992 1.153756 CAGGTTTGAGGCCCTTGGT 59.846 57.895 0.00 0.00 0.00 3.67
2055 2088 6.095440 GCTACAATACCATTGTCTTCCATTGT 59.905 38.462 7.76 0.00 38.36 2.71
2180 2213 1.644509 AGGTGCACACATCCAGACTA 58.355 50.000 20.43 0.00 0.00 2.59
2249 2282 7.434307 GCAATCATCTCATTTAGTTTGTCCATG 59.566 37.037 0.00 0.00 0.00 3.66
2337 2370 3.493176 GCCTTTGCTTTCACCAAATCACT 60.493 43.478 0.00 0.00 32.34 3.41
2432 2466 1.566231 ACCCTTCCTTCCTTGCATAGG 59.434 52.381 8.22 8.22 46.27 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.