>input_sequence_71721
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-----------------------------------------ATGCCTCGCCTCTGCTCCACCACGCCCATGGCCCG----
----CCT---CCGCCGCCGGCGCCGCTACTCCTCCTCCACCTC------GTCGCCTTCACGCCGTTGGGACCCCCGAGCC
GCCTTTGCCGCGGCCACGGAGCGCATCCGCGCCGGGACGCTCAGGCCTGAAGACGCACACCACCTGTTCGACGAATTGCT
ACTGCAGGCCAACCCCGTCCCCGAGCGCTCCCTCAGCGACTTCCTTGCCGCGCTCGCCCGTGCTCCGTCCTCCGCTGCTC
TCAGAGATGGACCCTCCCTTGCTCTCGGCCTCTTCAACCTCGTCTGCCGAGAAGAAGCAGGGCCGCAGGTGGCGCCACCC
ACAACCTGCACCTACAACATACTCATGGACAGCTGCTGCCGTGCACGCCGCCCGGACCTAGGCCTTGCCTTCTTCGGCCG
CTTCCTGAGTACGGGCCTCAAGGCAAACCAGATCGTCGCCACCACCCTCCTCAAGTGCCTCTGCCACGCAAGACGGACAG
ATGAGGCAATCAACGTGCTGCTCCATAGGATGTCTGAATTCGGATGTGTGCCTAATGTCATCTCATACTCTATAGTACTT
AAGAGCTTATGTGATGATAGCAGGAGCCAGCAAGCGCTCGAC---TTGCTCCAGATGGTGAGGA---AAGGAGGTGC-GG
CTCCCTCAGTGTGGTGGCATATAGCACAGTGA------------------------------------------------
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>chr1D_1_TraesCS1D01G076800
TATTGGATTCCTTTGTTTTTCTTTGTTTAGTTTCATTGGTTTCATTTTGTTGAGCACATGTAAACTTTTTCAGTACACAT
TGTCCATTTTTCGTATACATCAGAAACATATTATATATACACACTTTTCGTATACATTAGAAACATATTATACTAGTAAG
GTACGCGTGCATTACAAGCATGAGATTTGGTAACCAAATTATGAATAAATAACACAGTATAATATGTAAGCTTTGAGTCA
TATATGCATGATGTAGATATTTGTTTAATTCTTATAGTTGATCCCATCCAAAATCAATTAGTTTTATAAAAAATCTATTT
TTAAAATTCATGGAATTGTGCATTGTAAAGATAAAAACAAAAAGTGACAATTCATTAAAAAAAAGGTTTGGACAAATAAG
ATATGGAAGATTATAGAGAACAAAGGAGAAGTGCTTGTGTGTTTGAGGTTTGTGCATTATGCTTAAGTTTAACCATGCAG
TCTTCTAGATTATACATGCATGTGGCAGAACCTGATGGAATGTAGATGATATCCAACGGCCAGTAGTGCTCGGATTTGTC
ATCTCTGTACCGTCGGATTGGCTTCATCCAACGACCAACTTTTAAAGTTATTCGCACACTATATAGGTGTATAGATATGC
ACATTTAAGAAAACCATTAACATTTTCTAAAAACTATTTTCCATACACATTGTACATTTTTGATAGTACATTTTTATATA
TGCATTCTTAGTTAAATAAAATGTTCGTTTACCCCTAAAAAAGGCGAGACACAGGCGAGCCCGGAAGCCGGCTTGACCGG
AGGCAGTCGCTCCGTCGTTGGACCAGGCCTGAATCCAAACGGGCCGCTATTGCTGGACCAGACCGGAGTGAGGGTGACCA
CGTGTTAAGTGGGAAGCCCATTTTACCCGTTTTCCGTTTGGTACAGCGGAGACTCCTCTCACTCACGCACATCTCGCCAC
TCCCATTCCAACAGCGCGAACACGAAGGCCGTG-CCGCCCCATGCCTCGCCTCTGCTCCACCACGCCCATGGCCCG----
----CCT---CCGCCGCCGGCGCCGCTACTCCTCCTCCACCTC------GTCGCCTTCACGCCGTTGGGACCCCCGAGCC
GCCTTTGCCGCGGCCACGGAGCGCATCCGCGCCGGGACGCTCAGGCCTGAAGACGCACACCACCTGTTCGACGAATTGCT
ACTGCAGGCCAACCCCGTCCCCGAGCGCTCCCTCAGCGACTTCCTTGCCGCGCTCGCCCGTGCTCCGTCCTCCGCTGCTC
TCAGAGATGGACCCTCCCTTGCTCTCGGCCTCTTCAACCTCGTCTGCCGAGAAGAAGCAGGGCCGCAGGTGGCGCCACCC
ACAACCTGCACCTACAACATACTCATGGACAGCTGCTGCCGTGCACGCCGCCCGGACCTAGGCCTTGCCTTCTTCGGCCG
CTTCCTGAGTACGGGCCTCAAGGCAAACCAGATCGTCGCCACCACCCTCCTCAAGTGCCTCTGCCACGCAAGACGGACAG
ATGAGGCAATCAACGTGCTGCTCCATAGGATGTCTGAATTCGGATGTGTGCCTAATGTCATCTCATACTCTATAGTACTT
AAGAGCTTATGTGATGATAGCAGGAGCCAGCAAGCGCTCGAC---TTGCTCCAGATGGTGAGGA---AAGGAGGTGC-GG
CTCCCTCAGTGTGGTGGCATATAGCACAGTGATTCATGGTTTCTTTAAGGAAGGGGAAGTAAGCAAGGCATGCGATCTA-
--TTCCATGAGATGATGCAGCAAGGGATTGTGCCTAATGTGGTGACATATAGCTCGATTATTGATGCCTTGTGCAAGGTC
AGGGCAATGGACAAGGCAAAGCTGGTCCTTCAGCAGATGGTTGATAATGGTGTTCAACCAGATGTTGTTA----CTTGGA
ACTCATTCATGTACTCCTTTTGCAAGCATGGAAAAAGCAAAGAAGCTGCAGAATTTTTTGACTCCATGACCACCAAGGGC
CTCAAACCTGATATTGTCGCGTACTCTACTCTTCTTCACGGGTATGCTACTGAAGGATGCCTAGCCGATATGATTAATCT
CTTTAATACAATGGAAGACAATGGTATTGTAGCCAACTGCAATGTTTTCAACATATTAATTGATGCATATGCTAAACGTG
GAATGATGCATGAAGCTATGCTCATATTTACCGAAATGCAGGAACAAAGAGTTAGTCTGGATGTGTGCACCTATGCAACT
GTAATAGCTGCACTTTGCAGAATGGGCAGGCTGGCTGATGCCATGGACAAACTAAATGAGATGATTGCTATGGGATTACA
ACCGAACAAGGTTGTTTATCACTCTCTAATTCAGGGCTTTTGTACACATAGTGATTTGGTGAAAGCAAAGGCCTTGGTTT
CTGAAATGATGAACAAAGGTATTCCTCGTCCAAACATTGTG-TTCTTCAGCTCAGTAATAAACAGCCTATGCAAGGAAGG
AAGGGTTACAGATGCACACGATATCTTCGACTTGGCTATAAACATTGGTGAGAGGCCTGACGTTATTACATTTAATTCAC
TGATTGACGGATATTGTTTAGCCGGGAAGATGGATAAAGCATTCGGAGTACTTGATGCCATGGTATCAGCTGGCATTGAG
CACAATGTTGTCACATACAATACACTTGTTGATGGCTATTCTAGAAATGGAAGGATTGATGATGGGTTGACCCTATTCAG
>chr1B_790
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---------------------------------------------------------------------GGCTTGACCGG
AGGCAGCCGTTCTGTCGTTGGACCAGGCCTGAATCCAAACAGACTGCCATTTCTGAACCAGGCCGGAGTGAGGG------
--------------AGCCCATTTTACCCGTTTTCCATTTGGTATAGCTGAGACTCTTCTCAGTCGCGCTCG---CGCCAC
TCCTACTCCACCGGCACGAACACGAAGGCCGTGCCCGCCCCATGGCTCGCCTCTGCTTCACCACGCCCATGCCGCA----
----CCT---CCGC------CGCCGCTACTCCTCCTTCACCTC------GCCTCCTTCACGCCGCTGGGACCCCCGACCC
GCCTTTGCCGCAGCCACGGAGCGCGTCCGCGCCGGGACGCTCAGCCCTGAAGACGCACACCACCTGTTCGACGAATTGCT
ACTGCAGGCCAACCCCGTCCCCGAGCGCTCCCTCAACGGCTTCCTTGCCGCGCTCGCCCGTGCTCCGTCCTCCGCTACTC
TCAGAGATGGACCCTCCCTTGCTCTCGCCCTCTTCAACCGTGTCTGCCGAGAAGAAGCAGGACCGCCGGTGGCGCCGCCC
ACAGTCCGCACCTACAACATCCTCATGGACAGCTGCTGCCGTGCACGCCGCCCGGACCTAGGCCTTGCCTTCTTCGGCCG
CTTCCTGAGGGCGGGCCTCAAGGTAAACCTGATTGTCGCCAGCACCCTACTCAAGTGCCTCTGCCATGCAAGACGGACAG
ATGAGGCTGTCAACATGCTGCTTCATAGGATGTCCGAGTTCGGTTGTGTGCCTGATGCCATCTCATACTCCATAGTACTT
AAGGGCTTATGTGACAATAGCAGGAGCCAGCAAGCGCTCGAT---CTGCTCCAGATGGTAAGGA---AAGGAGGTGCCTG
CTCCCTCAGTGTGGTGGCATATAGCATAATCATACATGGCTTCTTTAAGGAAGGGGAAGTAAGCAAGGCATGCAATCTG-
--TTCCATGAAATGATGCAGCAAGGGGTTGTACCAGATGTGGTCACATATAGCTCCATTATTGATGCGCTGTGCAAGGTC
AGGGCAATGGACAAGGCAAAGTTGGTCCTTCAGCAGATGGTTAATAATGGTGTTCGACCAAATATGTATA----CTTGGA
ACTCATTCATGTACTCCCTGTGCAAGCATGGAAGAAGCAAAGAAGCTGCAGAATTTTTTAACTCCATGACCGCCAAGGGC
CTCAAACCTGATATTGTCGCGTACTCTACTCTTCTTCACGGGTATGCTACCGAAGGATGCCTCACCGATATGATTAATTT
CTTTAATTCAATGGAACGCAATGGTATTGTAGCCAACTGCAAAGTTTTCACCATATTAATTGATGGATATGCTAAATGTG
GAATGACAGATGAAGCTATGCTCATCTTTACCAAAATGCAAGAACAAGGAGTAAGTCCTAATGTATTCACCTATGCAATT
GTAACAGCTGCACTTTGCAGAATGGGCAGGCTGTCTGATGCAATGGAAAAACTAAATGAGATGATTGCAATGGGCTTACA
ACCGAACAAGGTTGTTTATCACTCTCTAATTCAGGTCTTTTGTACACATGGTGATTTGGTGAAAGCAAAGGCCTTGGTTT
CTGAAATGATGAACAAAGGTATTCCTCGTCCAAACATTGTG-TTCTTCAACTCAGTAATAAACAGTCTATGCAAGGAAGG
AAGAGTTACAGATGCACACGATATCTTCGACTTGGCTATAAACATTGGTGAGAGGCCTGACGTTATTACATTTAATTCAC
TGATTGACGGATATTGTTTAGCCGGGAAGATGGATAAAGCATTCGGAGTACTTGATGCCATGGTTTCATCTGGCATTGAG
CCCAATGTTGTCACATACAATACACTTGTTGGTGGCTATTCTAGAAATGGAAGGATTGATGATGGGTTGACCCTATTCAG
>chr1A_917
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------------------------------------TTTGGTACAGCGGAGGCTCCTCTCAGTCGCGCACCTCTCGCCAC
TCCCACTCCACCAGCGCGAACACGAAGGCCGTGCCAGTCCCATGGCTCGCCTCTGCTACACCACGCCCATGCCGCA----
----CCT---------CCGCCGCTGCTGCTCCTCTTCCACCTC------GCCGCCTTCACGCCACTGGGACCCCCGACCC
GCCTTTGCCGCGGCCACGGAGCGCGTCCGCGCCGGGACGCTCAGCCCTGAAGACGCACACCACCTGTTTGACGAATTGCT
ACTGCAGGCCAACCCCGTCCCCGAGCGTTCCTTCAACGACTTCCTTGCCGCGCTCGCCCGGGCTCTGTCCTCCGCTGCTC
TCAGAGATGGACACTCCCTTGCTCTCGGCATCTTCAACCGTGTCTGCCGAGAAGAAGCAGGGCCGTGCGTGACGCCACCC
ACAGTCTGCACCTACAACATCCTCATGGACAGTTGCTGTCGTGCATGCCACCCGAACCTAGGCCCTGCTTTCTTCGGCCG
CTTCCTCAGGACGGGCCTCAAGGCAGACCAGATCGTCGCCATCAACCTCCTCAAGTGCCTCTGCCACGCAAAACGGAAGG
ATGAGGCTGTCAACATGCTGCTTCATAGGATGTCTGAGTTCGGTTGTGTGCCTGATGCCATCTCATACTCCATAGTACTT
AAGAGCTTATGTGACGATAGCAGGAGCCAGCAAGCGCTCGAT---CTGCTCCAGATGGTAAGGA---AAGGAGGTGCCTG
CTCCCTCGATGTGGTGGCATATAGCACAGTCATCCGCAGCTTCTTTAAGGAGGGTGAAGTAAGTAAGGCATGCAATCTA-
--TTCCATGAAATGGTGCAACAAGGGATTGTGCCTAATGTGGTGACATATAGCTTGATTATTGATGCCTTGTGCAAGGTC
AGGGCAATGGACAAGGCAAAGCTGGTCCTTCAGCAGATGGTTGATAATGGTGTTCGACCAAATATGTATACATGCATGGA
ACTCATTCATGTACTCCCTTTGCAAGAATGGAGGAAGCAAAGAAGCTGCAGAATTTTTTGACTCCATGACCTCCAAGGGC
CTCAAACCTAATATCGTCGTGTACTCTACTCTTCTTCACGGGTATGCTACTGAAGGATGCCTAGCCGATATGATTAATCT
CTTTAATTCAATGAAAGACAATGCTATTGTAGCCAACTGCAATGTTTTCAACATATTAATTGATGCATATGCTAAACGTG
GAATGATGCATGAAGCTATGCTCATATTTACTGAAATGCAGGAACAAAGAGTGAGTCCTAATGTATTCACCTATGCAATT
GTAACAGCTGCACTTTGCAGAATGGGCAGGCTGTCTGATGCAATGGACAAACTAAATGAGATGATTGCAATGGGATTACA
ACCGAACAAGGTTGTTTATCATTCTCTAATTCAGGGTTTTTGTACACATGGTGATTTGGTGAAAGCAAAGGCCTTGGTTT
CTGAAATGATGAACAAAGGTATTCCTCGTCCAAACATTGTG-TTCTTCAGCTCAGTAATAAACAGTCTATGCAAGGAAGG
AAGGGTTACCGAGGCACACGATATCTTCGACTTGGCTATAAACATTGGCGAGAGGCCTAACGTTATTACATTTAGTTCAC
TGATTGACGGATATTGTTTAGCCGGGAAGATGGATAAAGCATTCGGAGTACTAGATGC----------------------
--------------------------------------------------------------------------------
>chr1D_960
CTCACC--------------------------------------------------------------------------
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----ATTCCACCAGCGCGAACACGAAGGCCGTGCCCGTCCCATGCCTCGCCTCTACCCCACCACGCCCATGCTCCGCCTC
CTCTCCT---CCGCCGCCGCCGCCTCTCCTCCTCCTCCACCTC------GTCGCCTTCACGCCGCTGGGACCCCCGAGCC
GCCTTTGCCGCGGCCACGGAGCGCGTCCGCGCCGGGACGCTCAGCCCTGAAGACGCACACCACCTGTTCGACGAATTGCT
ACTGCAGGCCAACCCGGTCCCCTACCGCTCCCTCAACGGCTTCCTTGCCGCGCTCGCCCGTGCTCCGTCCTCCGCTGCTC
TCAGAGATGGACCCTCCCTTGCTCTCGCCCTCTTCAACCGCGTCTGCCGAGAAGAAGCAGGACCGCGGGTGGCGCCGCCC
ACAGTCTGCACCTACAGCATCCTCATGGACAGCTGCTGCCGTGCATGCCGCCCGAACCTAGGCCTTGCTTTCTTCGGCCG
CTTCCTCAGGACGGGCCTCAAGGCAGACCAGATCGTCGCCAGCAACCTCCTCAAGTGCCTCTGCCACGCAAAACGGACGG
ATGAGGCTGTCAACATGCTGCTTCATAGGATGTCCGAGTTCGGATGTGTGCCTAATGTCATCTCATACTCTATAGTACTT
AAGAGCTTATGTGACGATAGCAGGAGCCAGCAAGCGCTCGAC---TTGCTCCAGATGGTGAGGAAAGAAGGAGGTGCCTG
CTCCTTCAATGTGGTGGCATATAGCACGGTCATCCACGGCTTCTTTAAGGAAGGGGAAGTAAGCAAGGCATGCGATCTG-
--TTCCATGAAATGATGCAGCAAGGGATTGTGCCTAATGTGGTGACATATAGCTCGATTATTGATGCCTTGTGCAAGGTC
AGGGCAATGGACAAGGCAAAGCTGGTCCTTCAGCAGATGGTTGATAATGGTGTTCGACCAAATATGTATA----CATGGA
ACTCATTCATGTACTCCCTTTGCAAGAATGGAAGAAGCAAAGAAGCTGCAGAATTTTTTGACTCCATGACCTCCAAGGGC
CTCAAACCTAATATCATCGTGTACTCTACTCTTCTTCACGGGTATGCTACCGAAGGATGCTTAGCTGATATGATTAATCT
CTTTAATTCAATGGAAGGCAATGGTATTGTAGCTGACTGCAATGTTTTCAACATATTAATTGATGCATATGCTAAATGTG
GAATGATGCATGAAGCTATGCTCATATTTACCAAAATGCGGGAACAAGGAGTGAGTCCGAATGTATGCACCTATGCAACT
GTAATAGCTGCACTTTGCAGAATGGGTAGGCTGTCTGATGCAATGGGCAAATTAAATAAGATGATTGCTACGGGATTACA
ACCGGACGTGGCTATTTATACATCCCTAATTCAGGGCTTCTGTACACATGGTGATTTGGGGAAAGTGAAGGAACTGGTTT
CTGAAATGATGAACAAAGGTATGCCTCGTCCAAACATTGTG-TTCTTCAGCTCAGTAATAAACAGTCTATGCAAAGAAGG
AAGAGTTACAGATGCACACAGTATCTTCGACTTGGCTATAAACATTGGTGAGAGGCCTGACGTCATTACATTTACTTCAC
TGATTGACGGATATTGTTTAGTTGGCAAGATGGATAAAGCATTCAAAGTACTTGATGCCATGGTATCGGCTGGCATCGAG
CCTGATGTTTATACATATACTACCCTTCTTGATGGCTATTCTAGAAATGGAAGGATTGATGATGGGTTGACACTATTCAG
>chr1D_1003
GCCTCC--------------------------------------------------------------------------
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------------------------------------------------GCCACTGCTCCACCACGCCCATGTCCCG----
----CCTCCGCCGCCGCCGCCGCCTCTCCTCTTCCACCTCACG---------ACCCACACCCTCCTGGTCTCCCCGCGCC
GCCTTTGCGGCGGCCACGGAGCGCGTCCGCGACGGAACGCTCGGCCCTCAAGACGCACACCACCTGTTCGACGAATTGTT
TCAGCAGGCCACCCCGGTCCCCGAGCGCCCCCTCAACGGATTCCTTGCCGCCCTCACCCGTGCCACGCCCTCCGAGGCCT
GCAGAGACGGCCCCGCCCTCGCCCTCTCCCTCTTCAACCGTGTCTGCCGAGAAGAAGCCGGCATGCGGGTGGCGCCGCCC
ACCATCTTCACCTACGGCGTCCTCATGAACTGCTGCTGCCACACGCGTCGTCCGGAACTTGGGCTCGCCTTCTTCGGCCG
CCTCCTAAGGACGGGCCTGAAGGCAGACAAGACCGTCGCCAACACTGTCCTCAAGTGCCTGTGCTGCGCTAAACGGACAG
ACGACGCTGTGAAAGTGCTGCTTCATAGGATGACCGAGCTGGGGTGTGTGCCTGATGCCTTCTCATACGCCATTGTCCTG
AAGAGCTTATGTGATGATAACAGGAGCCAGCAGGCGCTCGAC---CTGCTCCGGATGATGGCGAAAGAAGAAGGTGTGTG
CTCCCCTGACGTGGTCACATATAACACGGTCATCCACGGCTTCTTTAAGGAAGGAAAAATAGGCAAGGCATGCAATCTA-
--TTCCATGAAATGACGAAGCAAGGGTTTGTGCCTAATGTGGTGACATATAACTCGGTTATCAATGCATTGTGCAAGGCC
CGAGCAACGGACAATGCAGAGTTGTTCCTTCGGCAGATGGTTGATAACGGCGTTCAACC---------------------
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>chr1A_1004
CCTCCG--------------------------------------------------------------------------
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-------------------------------------------------CCATTGCTCCACTATGCCCATGTCCCG----
----CGTCTGCCTCCGCCGCCGCCTCTCCTCCTTCTCCAACTGCACCTCGCCGCCCTCACCAACCTGGTCTCCCCACGCC
GCCTTTGCCGCGGCCACGGAGCGCGTCCGCGCCGGAACGCTCAGCCCGCAAGACGCACACCACCTGTTCGACGAATTGTT
TCGGCAGGCCACTCCGGTTCCCGAGCGCTCCCTTGATGGATTCCTTGCCGCCCTCGGCCGTGCCACGCCCTCTGAGGCCT
GCAGAGACGGCCCCT-CCTCGCCCTCACCCTCTTCAACCGTGTCTGCCGAGAAGAAGCCGGCATGCGGGTTGCGCCGCCA
ACCATCTTCACCTACGGCATCCTCATGAACTGCTGCTGCCGTATGGGTCGTCCGGACCTAGGGCTCGCCTACTTTGGGCG
CATCCTCAGGGCGGGCCTGAAGGCAAACCAGATCGCCGCCAACACCGTCATCAAGTGCCTCTGCTGCGCAAAACATACCG
ACGAGGCTGTCAATATGCTGCTTCATAGGATGTCCGACCTCGGCTGTGTACCTGATGCCTTCTCATACAACACAGTTCTG
AAGAGCTTGTGTGAAGACGGCAGGAGCTTGCAGGCGCTCGACCTACTGCTCCAGATGGCGTCGAAGGAAGGAGGTGCCTG
CTCCCCCGACATGGTGGCATATAGCACGGTCATCCACGGCTTCTTGAAGGAAGGCAAAGTAGACAAGGCATGCAATCTA-
--TTCGATGAAATGATGCGGCAAGGGGTTGTGCCTGATGTGGTGACGTATAGCTCGATTATCGATGCATTGTGCAAAGCT
GGAGCAATGTACAAGGCAGAGTTGTTCCTTCGGCAGATGGTTGATGATGGTGTTCGACCGGATG----------------
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>chr1A_1007
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-----------------------------------------------CGCCACTCCTCTGCCACGCCCATGTCCGG----
----CGTCTGCCTCCGCCGCCGCCTCTCCTCCACCTCCACCTCCAACACGCCACCCTCACCTTCCTGGTCACCCCAGGCC
GCCTTTGCCGCGGCCACGGAGCGCGCCCGCGCCGGAACGCTCAGCCCTCAAGACGCACACCACCTGTTCGACGAATTGTT
TCGGCAGGCCACTCCGGTTCCCGAGCGCTCCCTTGAAGGATTCCTTGCCGCCCTCGGCCGTGCTGCATCCTCTGAAGCCT
GCAGAGACGGCCCCTCCCTTGCCCTCACTCTCTTCAACCGTCTCTGCCGAGAAGAAGCCGGCCGGCGGGTGGCGCCGCCC
ACAATCTACACCTACGGCATCCTGATGAACTGCTGCTGCCGCGTGCGTCGTCCAGACCTAGGGCTCGCCTTCTTCGGCCG
CCTCCTAAGGACCGGCCTCAAAACAAATGAGGTCGTCGCCAGCACCCTCCTCAAGTGCCTCTGCTGTGCAAAACGGGCAG
ATGAAGCTGTGAACGTGCTGCTTCATAGGATGTCCGTCCTCGGCTGTGTGCCTAATTCCTTCTCATACAACATAGTTCTA
AAGAGCTTATGTGATGACAGCAGGAGCCAGCGAGCGCTCGGC---CTGCTCCAGATGATGGCAAAAG---GAGGTGTCTG
CTCCCCCAACGTTCTGTCATATAACACAGTCATCCACGGCTTCTTTAAGGAAGGTGAAATAGACAAGGCCTGCAATCTA-
--TTCCATGAAATGACGAAGCAAGGGTTTGTGCCTAATGTGGTGACATATAACTCGGTTATCAATGCATTGTGCAAGGCC
CGAGCAATGGACAATGCAGAGTCGTTCCTTCGGCAGATGGTTGATAACGGTGTTCCACCTGAT-----------------
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>chr1A_1033
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-------------------------------------------------------------------------CCG----
----CCTCCGCCGCAGCCGCCTCTTCTCCTCCTCCGCCAC---CACCCCGCCGCCCGCACGCTCCTGGTCTCCCCACACC
GCCTTCGCCGTGGCCACATAGCGCGCCCTCGCCGGGAAGCTCAGCGGGGAGGACGCACGCCACCTGTTCGATGAATTGCT
GCAGCAGGCCACCCCGGTCCCCGAGCGCTCCCTGAACGGATTCCTCACTGCCCTCGCCCGTGCGCGGGACTCCGCCACTT
TCAGAAATGGCCCTGCCCTCGCCATCGCCCTCTTCAACCGTCTGTGCCGAGAAGAAGCCGGCTCGCGGGTGGCGTGGCCC
ACGGCCTGCACCTACACCATCCTCATGGACTGCTGCTGCCGGGCGCGTCGCCCGGATCTAGGGCCTGCTTTCCTTGGGCG
CCTCCTCAGGACGGGCCTGAAGACAAACCAGATCGTCGCCAACACCCTCCTCAAGTGCCTCTGCTACGCCAAACGGACGG
ATGAGGCTGTCAATGTATTGCTTCACAAGATGTCCGAGCTCGGCTGCGTGCCTGATGCCATCTCATACAACACAGTTCTT
AAGAGCTTATGTGAAGATAGCAGAAGCCAGGAAGCACTCGAC---CTGCTCTGGATGGTGGCAAAAGAAGGAGGTGTCGG
CTCTCTCGATGTGGTATCCCATAGCACTGTCATCCATGGCTTCTTTAAGGAAGGCGAAACAGGCAAGGCATGCAATCTA-
--TTCCATGAAATGACACATCAAGGGATTGTGCCCAATGTGATGACATATAACTTGATTATTGCTGCGTTGTGCAAGGCC
AGAGCAATGGACAAGGCAGAGCTGATCCTTCGGCAGATGGTTGATAACGGTGTTCGACCCAATACAGTTA----CTTGCA
GCTCGCTCATGTCTTCCCTTTGCAAGCATGGAAGAAGCAAAGAAGCTGCAGAAATTTTTGACTCCATGACTGCCAAGGGC
CTCAAACCTGATATCGTCGCATACTCTATTCTGCTTCATGGATATGCCACTGAAGGATGCCTTGCTGATATGATTGATCT
CTTCAATTCAATGAAAAACAATGGTATTGAAGCCACTTGTCAAGTTTTCAACATATTAATTGGTGCATATGCTAAATGTG
GAATGATGGATGAGGCTATGCTCATATTTACTGAAATGCGGCGACAAGGAGTGAGTCCGGATGTATTCACCTATACAACT
GTAATAGTCTCACTTTTTCGAACGAGTAGACTGGCCGATGCTATTGACAAATTCGATGAGATGATTGCCATTGGAGTACA
GCCAAACAGACCTGTTTAGCGGTCCCTAATTCAGGTTTGTTGTATAAATGGTGATGCGGTTAAAGCTAAGGAGCTGGTTT
CTGAAATGATGAACAAAGGTATTCCTCGTCCTGACATTGCG-TTCTTCACTTCAATAATAAATAGTCTATGCAAAGAAGG
AAGGGTTATGGATGCACAAAATATCTTTGACTTGCTTGTTGCCATAGATGAGAGGCCTAATGTCATTACATTTAATTCAC
TAATTGACGGATATTGCTTAGTTGGCGAGATGGATAAAGTATTCAGAGTACTTGATGCCATGAAATCAGTTGGTGCTGAG
CCTGATATTGTTACATACAATACACTTGTTAATGGCTATTGTAGAAATGGAAGGATTGACGATG----------------
>chr1A_1057
--------------------------------------------------------------------------------
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----------------------------CTCCGCCTCCTCCCC------CT-GCCTTCACGCCGCTGGGATCCCCGCGGG
GCCTTTGCCTCAGCCACGGAGCGCGCCCGCGCCGGGACGCTCAGCCCTGAAGACGCACACCACCTGTTCGACGAATTGCT
ACTACAGGCCAACCCCGTCCCCGAGCGCTCCCTCAACGGCTTCCTTGCCGCGCTCGCCCGCGCTCCGTCCTCCGCTGCTC
TCAGAGATGGACCCTCCCTTGCTCTCGGCCTCTTCAACCGCGTCTGCCGAGAAGAAGCAGGACCGCGGGTGGTGCCGCCC
ACAGTCTGCACATACAACATCCTCATGGACAGCTGCTGCCGTGCACGCCGTCCGGACCTAGGCCTTGCCTTCTTCGACCG
CTTCCTCAGGATGGGCCTCAAGGCAGACCAGATCGTCGCCAACAACCTCCTCAAGTGCCTCTGCCACGCAAGACGGACAC
ATGAGGCTATCAACGTGCTGCTTCATAGGATGTCTGAGTTCGGATGTGTGCCTAATGTCATCTCATACTCTATAGTACTT
AAGAGCTTATGTGACGATAGCAGGAGCCAGCAAGCGTTCGAC---CTGCTCCAGATGGTGAGGAAAGAAGGAGGTGCCGG
CTCCCTCAATGTGGTGGCGTATAGCACAGTGATTCATGCTTTCTTTAAGGAAGGGGAAGCAAGCAAGGCATGTGATCTA-
--TTCCATGAGATGATGCAGCAAGGGATTGTGCCTAATGTGGTGACATATAGCTCGATTATTGATGCCTTGTGCAAGGTC
AGGGCAATGGACAAGGCAAAGTTGGTCCTTCAGCAGATGGTTGATAATGGTGTTCGACCAAATATGTATA----CATGGA
ACTCATTCATGTACTCCCTTTGCAAGAATGGAAGAAGCAAAGAAGCTGCAGAATTTTTTGACTCCATGACCCCCAAGGGC
CTTAAACCTAATATCGTCGTGTACTCTACTCTTCTTCACGGGTATGCTAGCGAATGATGCTTAGCTGATATGATTAATCT
CTTTAATTCAATGGAAGGCAATGGTATTGTAGCTGACTGCAATGTTTTCAACATATTAATTGATGCATATGCTAAATGTG
GAATGATGCATGAAGCTATGCTCATATTTACCAAAATGCGGGAACAAGGAGTGAGTCCGAATGTATGCACCTATGCAACT
GTAATAGCTGCACTTTGCAGAATGGGTAGGCTGTCTGATGCAATGGGCAAATTAAATGAGATGATTGCTACGGGATTACA
ACCGGACGTGGCTATTTATACATCCCTAATTCAGGGCTTCTGTACACATGGTGATTTGGGGAAAGTGAAGGAGCTGGTTT
CTGAAATGATGAACAAAGGTATGCCTCGTCCAAACATTGTG-TTCTTCAGCTCAGTAATAAACAGTCTATGCAAAGAAGG
AAGAGTTACAGATGTACACAGTATCTTCGACTTGGCTATAAACATTGGTGAGAGGCCTGACGTTATTACATTTACTTCAC
TGATTGACGGATATTGTTTAGTTGGCAAGATGGATAAAGCATTCAAAGTACTTGATGACATGGTATCAGCTGGCATTGAG
CCTGATGTTTATACATATACTACCCTTCTTGATGGCTATTCTAGAAATGGAAGGATTGATGATGGGTTGACACTATTCAG
>chr1D_1100
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------GCC
GCATTCGCCGCTGCCACGAAGCGCGCCCGAGCCGGGACGCTCAGCCCTGAGGACGCACACCACCTGTTCGACGAATTGCT
ACGCCAGTCCATCCCGGTCCCCAACCGCTTCCTGAACGGCTTCCTTGCCGCCCTCGCCCGTGCCCCAGTCTCCGAAGCCT
GCGGAGATGGCCCCGCCCTCACCGTCGCCCTCTTCAACCGCCTCTGCCGAGAAGAAGCCGGCCCTTGTGTAGAGCCGCCC
ACTTACTATACCTACAGCATTCTAATGGACAGCTGCTGCCGCGTGGGTCGCCCCGACCTTGGGCTTGCTTTCTTCGGCCG
CCTACTCAAGTCAGGCCTCAAGGCAGACCAGATCACCGCCAGCAGCCTCCTCATGTGCCTCTGCGATGCAGGACGGACAA
ACGAGGCTGTGGACGTGCTGCTTCATAGGATCTCCGAGCTCGGCTGTGAGCCTAATGTCATCCCATACAACATAGTTCTT
AAGAGCTTATGTGACAGTAGCAGGAGCCAGCGAGCTCTTGAC---CTGCTCCAGATGATGGCAC---AAAGAGCTTGCTG
CTCCCCTAATGTGGTGTCATATAACACCGTCATTCAGGGCTTATTTAAGGAAGGCCAAGTAAGCATGGCGCGCACATTCT
TCTTCTATGAA-------ATGATGGGGTTATGCCTAATGTGGTGACATATAGCTTGATGGTTGGTGGGTTGTGCAAGGTC
GGGGCAAGGGACAAGGCAAAGCTGGTCCTTCGGCATATGGTTGGTAATAGTGTTCGACCAGATATGTATA----CTTGGA
ACTCATTCATGGGATCTCTTCGCAAGCAGGGAAGAAGCAAGGAAGCTACACAACTTTTTGATTACATGGCCGCCAAGGGC
CACAAACCTGATGTTGTCATGTACTCTACTCTGCTTCATGGGTATGCTACTGAAGGATGCTTCACTGATATGATTAATCG
CTTTAATTCAATGGAAGGCAACGGTATTGTAGCTAACAGCCGTGTTTTTAACATACTAATCGACGCATATGCTAAACGTG
GAATGATGCATGAAGCTATGCTCATATTTACTGAAATGCGGGAACAAAGAGTGAGTCCTGATACATTCACCTATGGAATT
ATAATAGCTGCACTTTGCAGAATGGGTAGGCTATCTGATGCTATGGAGAAATTAAATGAAATGGTTGCTACAGGATTACA
GCCGGACGAGGCTGTTTACTATTCCCTAATTCAGGGTTTTTGTACACATGATGATTTGGTCAAAGCTAAGGAGTTGGTTT
CTGAGATGATGACCAAAGGTATTCCTCGTCCTAACATTGTG-TTCTTCAACTCGGTAATAGCCAGGCTGTGCAAAGAAGG
AAGGGTTAAGGATGCACACGGTATCTTTGACTTGGCTATGAACATTGGTGAGAGGCCCAACGTTATTACATTTAATTCAC
TGATTCACGGCTATAGCTTGGTTGGCAAGATGGCGAAAGCTTTCGGGGTACTTGATGACATGGAATCAGTTGGCATTGAG
CCCGATGTTGTTACTTATACTACACTTCGTCATGGCTATTCTAGAAATAGAAGG--------------------------
>chr1B_1100
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-----------------------------------------------------------------------------GCC
GCATTCGCCGCTGCCACAAAGCGCGCCCGAGCCGGGACGCTCAGCCCTGAGGACGCACACCACCTGTTCGACGAATTGCT
ACGCCAGTCCAACCCGGTCCCCAATCGCTTCCTGAACAGCTTCCTTGCCGCCCTCGCCCGTGCTCCACCCTCCGACGCCT
GCGGAGATGGCCCCGCCCTCACCGTCGCCCTCTTCAACCGCCTGTGCCGAGAAGAGGCCGGCCCTTGTGTAGCGCCGCCC
ACTATCTATACCTACAGCATTCTAATGGACAGCTGCTGCCGCGTGGGTCGCCCGGACCTTGGGCTTGCTGTCTTCGGCCG
CCTACTCAAGTCGGGCTTCAAGGCAGACCAGAGCACTGCCAGCAGCCTCCTCATGTGCCTCTGCGATGTAGGACGGACAA
ACGAGGCTGTGGACGTGCTGCTTCATAGGATCTCCGAGCTCGGCTGTGAGCCTAATGTCATCCCATACAACATAGTTCTT
AAGAGCTTATGTGACAGTAGAAGGAGCCAGCAAGCTCTTGAC---CTGCTCCAGATGATGGCAC---AAAGAGGTTGCTG
CTCCCCTAATGTGGTGTCATATAACACCGTCATTCATGGCTTATTTAAGGAAGGTGAAGTAAGCATGGCGTGCTCATTA-
--TTCTATGAAATGATGCGGCAAAGGGTTATGCCTAATGTGGTGACATATAGATCGATGATTGGTGCGTTGTGCAAGGTC
GGGGCAACGGACAAGGCAAAGCTGGTCCTTGGTCATATGGTTGGTAATGGTTTTCGACCAGATAAGTATA----TTTGGA
ACTCATTCATGGCATCTCTTTGCAAGCAGGGAAGAAGCAAGGAAGCTGCACAACTTTTTGATTACATGGTCGCCAAGGGC
CACAAACCTGATGTTGTCACGTACTCTACTCTGCTTCATGGGTATGCTACTGAAGGATGCTTCACTGATATGATTAATCT
CTTTAATTCAATGGAAGGCAACGGTATTGTAGCTAACAGCTGTGTTTTTAACATACTAATTGACGCATATGCTAAACGTG
GAATGATGCATGAAGCTATGCTCATATTTACTGAAATGCGGGAACGAAGAGTGAGTCCTGATATATTCACCTATGGAATT
ATAATAGCTGCACTTTGCAGAATGGGTAGGCTATCTGATGCTATGGAGAAAATAAATGAAATGGTTGCTACAGGATTACA
ACCGGACAAGGCTGTTTACTATTCCCTAATTCAGGGTTTTTGTACACATGATGATTTGGTCAAAGCTAAGGAGTTGGTTT
CTGAGATGATGACCAAAGGTATTCCTCGTCCTAACATTGTG-TTCTTCAACTCGGTAATAGCCAGTCTGTGCAAAGAAGG
AAGGGTTAAGGATGCACACGGTATCTTTGACTTGGCTCTGAACATTGGTGAGAGGCCCG----------ATTTAATTCAC
TGATTCACGGCTATAGCTTGGTTGGTGAGGTGGCGAAAGCATTTGGGCTACTTGATGACATGGAATCAGTTGGCATTGAG
CCCGATGTTGTTACTTATACTACACTTCATCATGGCTATTCTAGAAATAGAAGG--------------------------
>chr1D_1859
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----------------------------------------------ATGGTCTTGTACCAAATGCAGTCA----CTTGCA
GCTCGTTAATGACTTCCCTTTGCAAGCATGGAAGAAGCAAAGAAGCGGCAGAAATATTTTATTCCATGACTGCCAAGGGC
CACAAACCGGATGCCGTCTCGTACCGTATTTTGCTTCATGGGTATGCCACTGAGGGATGCTTTGCTGATATGATTGATCT
CTTCAATTCAATGGAAAGCAATGGTTTTGTAGCAGACTGCCATGTTTTCACCATATTAATTGATGCATATGCTAAACGTG
GAATGATGGATGAAGCTATGCTCATATTTACCGAAATGCAGGAAAAAGGAGTGAGTCCCAATGTAGTCACCTATTCCACT
GTAATAGCCGCACTTTGCAGATTGGGTAGGCTGGCCGATGCTATGGACAAGTTCAATGAGATGATTGATATGGGTGTTCA
GCCGGGCACAACTGTTTATCACTCCCTAATTCAGGGGTTTTGTATGCATGTAGATTTGGTTAAAGCCAAGGAGTTAGTTT
CTGACATGATAAGCAAAGGTATTCCTCGTCCCAACATTGTTTTTCTTCAATTCAGTTATAAACTATTTGTGCAAAGAAGG
ACGGGTTATGGATGCACAAGATATCTTTGAATTGGTTATAAGCATAGATGGGAAGCCTGATGTCATTACATTTAACTCAC
TGATTGACGGATATTGCTTAGTCGGCAAGATGGATAAAGCATTTGGAGTACTTGATGCCATGGTGTCAGCTGGCATTGAG
CCTAATGTTGTTACATATAATACACTTGTTAATGGCTATTCTAGAAATGGAAGGATCGATGATGGTTTGACTCTGTTCAG
>chr1D_1870
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---------------------------------------------------------CCAGATATTGTTA----CTTGCA
ACTCCTTCCTGTCCTCCCTTTGCAAGCATGGAAGAAGCAAAGAAGCTGCAGAATTTTTTGATTCCATGACCGCCAAGGGC
CACAAACCGGATATCGTCTCATACCGTATTTTGCTTCATGGGTATGCTACTGAAGGATGCTTTGCTGATATGATTGACCT
CTTTAATGCAATGGAAAGGAATGGCATTGCAGCCGACTG-CGTGTTTTCAACATATTAATCGATGCGTATGCTAAACATG
GAATGACGGATGAAGCTATGCTCATATTTACGGAAATGCGGGAAAAAGGAGTAGGTCCCGATGCGTTCACCTATTCCACT
GTAATAGCCGCACTTTCCAGAATGGGTAGGTTGACCGATGCTATGGGCAAGTTAAGTCAGATGATTGCCATGGGAGTTCA
ACCGGACACAGCTGTTTATCACTCCCTGATTCAGGGTTGTTGTATACATGGTGATTTGGTTAAAGCCAAGGAGCTGGTTT
CTGAAATGATGAACAAAGGTATTCCTCGTCCTAGCATTGCG-TTCTTCAGTTCAGTGATAAACTATTTATGCAAAGAAGG
CAGGGTTATGGATGCACATGATATCTTTGACCTTGTTATAGACATGGGTGAGAGGCCTGATGTCATTACATTTAATTCAC
TGATTGACGGATATTGCTTAGTTGATAAGATGGATAAAGCACTCAGAGTGCTTGATTCCATGGTATCATTTGGCATTGAG
CCTAATGTGGTTACATATAATACACTTGTTAATGGCTACTGTACAAACGGAAGGATCGATGATGGTTTGACCCTGTTTAG
>SNPs
SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
------S--S--S---------------------------S-S-S--S---S---S-----S------------SSSSSS
SSSSSSSSSSSSSS---------------------S-------------------------S--S-----S---------
----------S------------------------------------------------------------S--------
-------------------S--------------------------------------------S---------------
------------------------S-------------------S-----------------------------------
-----------------------------------S--------------------------------------------
---------------------------------------S--------------------------S-------------
--------------------S-----------------------------------------------------------
---------S-------------------------------S--------------------------------------
-------S--------------S--------------S------------------------------------------
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-----------------S---------------S-------------------------------------S--------
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-------S------------------------------------------------------------------------
----------------------------------------------------S----S----------------------
-----------------------------------------S--------------------------------------
-------------------------------------------------S------------------------------
-----------------------------------------------------------------S--------------
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-S------------------------------------------------------------------------------
>forward_557
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---------------------------------------------------------GGCCAGTAGTGCTCGGATTT---
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>reverse_1992
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-----------------------------------------------------------------------ACCAAGGGC
CTCAAACCTG----------------------------------------------------------------------
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