Multiple sequence alignment - TraesCS1D01G068200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G068200 chr1D 100.000 3358 0 0 1 3358 49886878 49890235 0.000000e+00 6202
1 TraesCS1D01G068200 chr1A 89.180 1414 133 8 1254 2659 49261024 49262425 0.000000e+00 1746
2 TraesCS1D01G068200 chr1A 89.765 850 57 9 15 855 49259821 49260649 0.000000e+00 1061
3 TraesCS1D01G068200 chr1A 81.865 579 82 18 2785 3354 49262968 49263532 1.820000e-127 466
4 TraesCS1D01G068200 chr1A 85.185 243 23 9 992 1223 49260786 49261026 1.560000e-58 237
5 TraesCS1D01G068200 chr1A 79.705 271 49 4 206 473 49260155 49260422 1.230000e-44 191
6 TraesCS1D01G068200 chr1B 91.071 840 57 5 84 909 70237931 70238766 0.000000e+00 1120


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G068200 chr1D 49886878 49890235 3357 False 6202.0 6202 100.000 1 3358 1 chr1D.!!$F1 3357
1 TraesCS1D01G068200 chr1A 49259821 49263532 3711 False 740.2 1746 85.140 15 3354 5 chr1A.!!$F1 3339
2 TraesCS1D01G068200 chr1B 70237931 70238766 835 False 1120.0 1120 91.071 84 909 1 chr1B.!!$F1 825

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
927 951 0.029834 ACTGTTCGTTCGCGTGTAGT 59.970 50.0 5.77 0.00 42.11 2.73 F
991 1051 0.032952 GACTTGGACACGTGCACCTA 59.967 55.0 25.33 19.48 0.00 3.08 F
1906 2031 0.097674 CAAAGCTACTGATGGTGCGC 59.902 55.0 0.00 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1999 2124 0.036875 CCTGGTCACCCAAGTCCTTC 59.963 60.0 0.0 0.0 41.27 3.46 R
2000 2125 0.697854 ACCTGGTCACCCAAGTCCTT 60.698 55.0 0.0 0.0 41.27 3.36 R
3102 3670 0.104855 TCGTGATAGCCAGACATGCC 59.895 55.0 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.928661 AGGAGAATTTTCATGTCGTTCG 57.071 40.909 0.00 0.00 0.00 3.95
48 49 7.014115 GTCGTTCGTATACATGATCGTAATCT 58.986 38.462 0.00 0.00 35.39 2.40
50 51 6.795593 CGTTCGTATACATGATCGTAATCTGT 59.204 38.462 0.00 0.00 31.27 3.41
51 52 7.322938 CGTTCGTATACATGATCGTAATCTGTT 59.677 37.037 0.00 0.00 31.27 3.16
66 67 0.450972 CTGTTGCATGCACACGTACG 60.451 55.000 22.58 15.01 0.00 3.67
144 145 1.544825 CCTCACCGGCTCTTCTTCCA 61.545 60.000 0.00 0.00 0.00 3.53
324 325 2.410469 GCCACGCATCATTGCCTC 59.590 61.111 0.00 0.00 46.57 4.70
325 326 2.711311 CCACGCATCATTGCCTCG 59.289 61.111 0.00 0.00 46.57 4.63
326 327 2.108514 CCACGCATCATTGCCTCGT 61.109 57.895 0.00 0.00 46.57 4.18
436 437 2.750350 CCGAGGTCCACAGGCTTT 59.250 61.111 0.00 0.00 0.00 3.51
445 446 3.044305 ACAGGCTTTGCGACGCTC 61.044 61.111 22.08 7.35 0.00 5.03
451 452 1.712081 CTTTGCGACGCTCATCCTG 59.288 57.895 22.08 0.65 0.00 3.86
669 673 0.250684 TTCTGCTTGTCCATTGCCGA 60.251 50.000 0.00 0.00 0.00 5.54
691 695 0.596600 GCGAGGTGTGAAGTTGACGA 60.597 55.000 0.00 0.00 0.00 4.20
701 705 6.204359 GTGTGAAGTTGACGACTAGACTTAA 58.796 40.000 0.00 0.00 37.72 1.85
702 706 6.360148 GTGTGAAGTTGACGACTAGACTTAAG 59.640 42.308 0.00 0.00 37.72 1.85
703 707 6.039047 TGTGAAGTTGACGACTAGACTTAAGT 59.961 38.462 8.13 8.13 37.72 2.24
704 708 6.916932 GTGAAGTTGACGACTAGACTTAAGTT 59.083 38.462 10.02 2.79 37.72 2.66
802 822 1.152525 GGGGAGGATGGAGCGAGTA 60.153 63.158 0.00 0.00 0.00 2.59
804 824 1.343069 GGGAGGATGGAGCGAGTAAT 58.657 55.000 0.00 0.00 0.00 1.89
816 836 5.103000 GGAGCGAGTAATTATATGCATCGT 58.897 41.667 0.19 0.00 0.00 3.73
833 853 0.460311 CGTGGATCCTACACTGACCC 59.540 60.000 14.23 0.00 36.71 4.46
909 933 3.079960 TCAGATGACCGAATTCGCTAC 57.920 47.619 22.36 14.63 38.18 3.58
910 934 2.688446 TCAGATGACCGAATTCGCTACT 59.312 45.455 22.36 12.56 38.18 2.57
911 935 2.791560 CAGATGACCGAATTCGCTACTG 59.208 50.000 22.36 18.99 38.18 2.74
912 936 2.427453 AGATGACCGAATTCGCTACTGT 59.573 45.455 22.36 13.88 38.18 3.55
913 937 2.736144 TGACCGAATTCGCTACTGTT 57.264 45.000 22.36 0.00 38.18 3.16
914 938 2.602878 TGACCGAATTCGCTACTGTTC 58.397 47.619 22.36 9.09 38.18 3.18
915 939 1.582502 GACCGAATTCGCTACTGTTCG 59.417 52.381 22.36 7.78 42.08 3.95
916 940 1.068055 ACCGAATTCGCTACTGTTCGT 60.068 47.619 22.36 8.43 41.16 3.85
917 941 1.990563 CCGAATTCGCTACTGTTCGTT 59.009 47.619 22.36 0.00 41.16 3.85
918 942 2.027688 CCGAATTCGCTACTGTTCGTTC 59.972 50.000 22.36 0.00 41.16 3.95
919 943 2.283727 CGAATTCGCTACTGTTCGTTCG 60.284 50.000 15.93 10.70 38.77 3.95
920 944 0.989890 ATTCGCTACTGTTCGTTCGC 59.010 50.000 0.00 0.00 0.00 4.70
921 945 1.332180 TTCGCTACTGTTCGTTCGCG 61.332 55.000 0.00 0.00 42.15 5.87
922 946 2.078914 CGCTACTGTTCGTTCGCGT 61.079 57.895 5.77 0.00 42.11 6.01
923 947 1.411089 GCTACTGTTCGTTCGCGTG 59.589 57.895 5.77 0.00 42.11 5.34
924 948 1.273455 GCTACTGTTCGTTCGCGTGT 61.273 55.000 5.77 0.00 42.11 4.49
925 949 1.954437 CTACTGTTCGTTCGCGTGTA 58.046 50.000 5.77 0.00 42.11 2.90
926 950 1.903139 CTACTGTTCGTTCGCGTGTAG 59.097 52.381 5.77 3.90 42.11 2.74
927 951 0.029834 ACTGTTCGTTCGCGTGTAGT 59.970 50.000 5.77 0.00 42.11 2.73
928 952 0.701303 CTGTTCGTTCGCGTGTAGTC 59.299 55.000 5.77 0.00 42.11 2.59
929 953 0.993251 TGTTCGTTCGCGTGTAGTCG 60.993 55.000 5.77 3.65 42.11 4.18
930 954 0.993746 GTTCGTTCGCGTGTAGTCGT 60.994 55.000 5.77 0.00 42.11 4.34
931 955 0.316937 TTCGTTCGCGTGTAGTCGTT 60.317 50.000 5.77 0.00 42.11 3.85
932 956 0.993251 TCGTTCGCGTGTAGTCGTTG 60.993 55.000 5.77 0.00 42.11 4.10
933 957 1.264141 CGTTCGCGTGTAGTCGTTGT 61.264 55.000 5.77 0.00 35.57 3.32
934 958 0.428618 GTTCGCGTGTAGTCGTTGTC 59.571 55.000 5.77 0.00 0.00 3.18
935 959 0.661187 TTCGCGTGTAGTCGTTGTCC 60.661 55.000 5.77 0.00 0.00 4.02
936 960 2.084681 CGCGTGTAGTCGTTGTCCC 61.085 63.158 0.00 0.00 0.00 4.46
937 961 2.084681 GCGTGTAGTCGTTGTCCCG 61.085 63.158 0.00 0.00 0.00 5.14
938 962 1.283793 CGTGTAGTCGTTGTCCCGT 59.716 57.895 0.00 0.00 0.00 5.28
939 963 0.318107 CGTGTAGTCGTTGTCCCGTT 60.318 55.000 0.00 0.00 0.00 4.44
940 964 1.856802 GTGTAGTCGTTGTCCCGTTT 58.143 50.000 0.00 0.00 0.00 3.60
941 965 2.604373 CGTGTAGTCGTTGTCCCGTTTA 60.604 50.000 0.00 0.00 0.00 2.01
942 966 3.578688 GTGTAGTCGTTGTCCCGTTTAT 58.421 45.455 0.00 0.00 0.00 1.40
943 967 4.671508 CGTGTAGTCGTTGTCCCGTTTATA 60.672 45.833 0.00 0.00 0.00 0.98
944 968 4.558860 GTGTAGTCGTTGTCCCGTTTATAC 59.441 45.833 0.00 0.00 0.00 1.47
945 969 3.940209 AGTCGTTGTCCCGTTTATACA 57.060 42.857 0.00 0.00 0.00 2.29
946 970 3.578688 AGTCGTTGTCCCGTTTATACAC 58.421 45.455 0.00 0.00 0.00 2.90
947 971 3.005684 AGTCGTTGTCCCGTTTATACACA 59.994 43.478 0.00 0.00 0.00 3.72
948 972 3.121778 GTCGTTGTCCCGTTTATACACAC 59.878 47.826 0.00 0.00 0.00 3.82
949 973 2.090967 CGTTGTCCCGTTTATACACACG 59.909 50.000 0.00 0.00 36.12 4.49
950 974 3.059166 GTTGTCCCGTTTATACACACGT 58.941 45.455 0.00 0.00 34.47 4.49
951 975 4.233789 GTTGTCCCGTTTATACACACGTA 58.766 43.478 0.00 0.00 34.47 3.57
952 976 4.095410 TGTCCCGTTTATACACACGTAG 57.905 45.455 0.00 0.00 34.47 3.51
953 977 3.755905 TGTCCCGTTTATACACACGTAGA 59.244 43.478 0.00 0.00 34.47 2.59
956 980 4.458989 TCCCGTTTATACACACGTAGACTT 59.541 41.667 0.00 0.00 34.47 3.01
968 992 4.332788 CACGTAGACTTTAGCTCGTGTAG 58.667 47.826 11.01 0.00 41.96 2.74
969 993 3.373439 ACGTAGACTTTAGCTCGTGTAGG 59.627 47.826 0.00 0.00 0.00 3.18
978 1038 0.173708 GCTCGTGTAGGAGGACTTGG 59.826 60.000 4.04 0.00 34.56 3.61
985 1045 1.067776 GTAGGAGGACTTGGACACGTG 60.068 57.143 15.48 15.48 0.00 4.49
987 1047 1.069090 GAGGACTTGGACACGTGCA 59.931 57.895 17.22 3.18 0.00 4.57
988 1048 1.222115 GAGGACTTGGACACGTGCAC 61.222 60.000 17.22 6.82 0.00 4.57
991 1051 0.032952 GACTTGGACACGTGCACCTA 59.967 55.000 25.33 19.48 0.00 3.08
992 1052 0.466543 ACTTGGACACGTGCACCTAA 59.533 50.000 25.33 18.32 0.00 2.69
993 1053 1.134340 ACTTGGACACGTGCACCTAAA 60.134 47.619 25.33 15.33 0.00 1.85
994 1054 1.263217 CTTGGACACGTGCACCTAAAC 59.737 52.381 25.33 0.00 0.00 2.01
995 1055 0.466543 TGGACACGTGCACCTAAACT 59.533 50.000 25.33 1.96 0.00 2.66
997 1057 1.270147 GGACACGTGCACCTAAACTCT 60.270 52.381 17.22 0.00 0.00 3.24
998 1058 2.480845 GACACGTGCACCTAAACTCTT 58.519 47.619 17.22 0.00 0.00 2.85
999 1059 2.475487 GACACGTGCACCTAAACTCTTC 59.525 50.000 17.22 0.00 0.00 2.87
1012 1120 9.838339 CACCTAAACTCTTCATATAAGTTGGAT 57.162 33.333 0.00 0.00 33.68 3.41
1042 1150 2.483876 CAGTCTGTTCATGTTCGGTGT 58.516 47.619 0.00 0.00 0.00 4.16
1047 1155 4.748102 GTCTGTTCATGTTCGGTGTCTAAA 59.252 41.667 0.00 0.00 0.00 1.85
1048 1156 4.988540 TCTGTTCATGTTCGGTGTCTAAAG 59.011 41.667 0.00 0.00 0.00 1.85
1063 1171 6.128172 GGTGTCTAAAGAAACACAGATCCATG 60.128 42.308 7.80 0.00 45.99 3.66
1067 1175 8.394121 GTCTAAAGAAACACAGATCCATGAATC 58.606 37.037 0.00 0.00 0.00 2.52
1083 1191 2.230266 TGAATCGGAGTTGATCACGTCA 59.770 45.455 0.00 0.00 34.25 4.35
1084 1192 3.250744 GAATCGGAGTTGATCACGTCAA 58.749 45.455 0.00 0.00 44.36 3.18
1085 1193 2.347697 TCGGAGTTGATCACGTCAAG 57.652 50.000 0.00 0.00 46.99 3.02
1087 1195 1.795768 GGAGTTGATCACGTCAAGCA 58.204 50.000 0.00 0.00 46.99 3.91
1088 1196 1.461127 GGAGTTGATCACGTCAAGCAC 59.539 52.381 0.00 0.00 46.99 4.40
1096 1204 2.356313 CGTCAAGCACGTCCAGCT 60.356 61.111 0.00 0.00 44.07 4.24
1127 1246 1.142748 GCCATGGGTCTCTGTCTCG 59.857 63.158 15.13 0.00 0.00 4.04
1144 1263 3.368571 GGCAAGACCAGCAGCCAC 61.369 66.667 0.00 0.00 46.26 5.01
1230 1349 4.393155 TGCCGACCGCATCAGCTT 62.393 61.111 0.00 0.00 44.64 3.74
1231 1350 3.127533 GCCGACCGCATCAGCTTT 61.128 61.111 0.00 0.00 39.10 3.51
1232 1351 2.787249 CCGACCGCATCAGCTTTG 59.213 61.111 0.00 0.00 39.10 2.77
1233 1352 1.741401 CCGACCGCATCAGCTTTGA 60.741 57.895 0.00 0.00 39.10 2.69
1234 1353 1.699656 CCGACCGCATCAGCTTTGAG 61.700 60.000 0.00 0.00 39.10 3.02
1235 1354 1.699656 CGACCGCATCAGCTTTGAGG 61.700 60.000 12.91 12.91 39.64 3.86
1236 1355 1.986575 GACCGCATCAGCTTTGAGGC 61.987 60.000 14.04 8.93 41.55 4.70
1237 1356 1.748122 CCGCATCAGCTTTGAGGCT 60.748 57.895 10.34 0.00 42.63 4.58
1243 1362 4.393693 AGCTTTGAGGCTGTCTGC 57.606 55.556 0.00 0.00 41.43 4.26
1252 1371 3.900855 GCTGTCTGCCATGACTGG 58.099 61.111 0.00 0.00 46.17 4.00
1305 1424 0.179009 ATGCCATGGATCAACCTCCG 60.179 55.000 18.40 0.00 38.21 4.63
1306 1425 1.271127 TGCCATGGATCAACCTCCGA 61.271 55.000 18.40 0.00 38.21 4.55
1330 1449 1.207329 GGTTCCTACCAGAGCATCGTT 59.793 52.381 0.00 0.00 44.36 3.85
1333 1452 2.388735 TCCTACCAGAGCATCGTTGAT 58.611 47.619 0.00 0.00 42.67 2.57
1346 1465 4.864247 GCATCGTTGATGGCAAAATTTACT 59.136 37.500 8.71 0.00 40.10 2.24
1394 1513 3.710722 CCTCCTTCGGCAGCTGGT 61.711 66.667 17.12 0.00 0.00 4.00
1399 1518 1.301677 CCTTCGGCAGCTGGTTTCTC 61.302 60.000 17.12 0.00 0.00 2.87
1415 1534 0.743701 TCTCTACGAGCACTCCGGTC 60.744 60.000 0.00 0.00 38.84 4.79
1424 1543 1.666872 CACTCCGGTCGGTTGTTCC 60.667 63.158 9.36 0.00 36.47 3.62
1428 1547 2.280524 CGGTCGGTTGTTCCTGCA 60.281 61.111 0.00 0.00 0.00 4.41
1431 1550 2.280524 TCGGTTGTTCCTGCACGG 60.281 61.111 0.00 0.00 0.00 4.94
1437 1556 0.468226 TTGTTCCTGCACGGTCTTCT 59.532 50.000 2.68 0.00 0.00 2.85
1441 1560 0.251386 TCCTGCACGGTCTTCTCTCT 60.251 55.000 2.68 0.00 0.00 3.10
1450 1569 2.035961 CGGTCTTCTCTCTGGAAACACA 59.964 50.000 0.00 0.00 35.60 3.72
1454 1573 1.801242 TCTCTCTGGAAACACACCCA 58.199 50.000 0.00 0.00 35.60 4.51
1459 1578 1.216678 TCTGGAAACACACCCACCATT 59.783 47.619 0.00 0.00 35.60 3.16
1472 1591 1.340017 CCACCATTGAGATCCCGTGTT 60.340 52.381 0.00 0.00 0.00 3.32
1489 1608 0.804989 GTTGCTACCATGAGTGCACC 59.195 55.000 14.63 5.76 33.92 5.01
1525 1644 2.472059 CGCCCATGACCGTGGAATG 61.472 63.158 9.73 0.00 42.02 2.67
1548 1667 3.127533 GACGCTGATGGGTGGCAC 61.128 66.667 9.70 9.70 39.55 5.01
1549 1668 3.899981 GACGCTGATGGGTGGCACA 62.900 63.158 20.82 0.00 39.55 4.57
1573 1692 0.797542 TGGCGCGTTTAACCATGTAC 59.202 50.000 8.43 0.00 0.00 2.90
1580 1699 4.574759 GCGTTTAACCATGTACAAGATCG 58.425 43.478 0.00 0.00 0.00 3.69
1591 1710 1.139989 ACAAGATCGTTGTGTGCTCG 58.860 50.000 9.00 0.00 0.00 5.03
1621 1740 2.027751 GCGGCGATCCTCTACACC 59.972 66.667 12.98 0.00 0.00 4.16
1638 1757 4.058797 CGGAGGAACCAACACCAC 57.941 61.111 0.00 0.00 38.90 4.16
1639 1758 1.147376 CGGAGGAACCAACACCACA 59.853 57.895 0.00 0.00 38.90 4.17
1704 1823 0.989164 CTTCGCGCGTCTGATTACAA 59.011 50.000 30.98 12.16 0.00 2.41
1750 1869 3.307339 GGATCTTTGCTCTCACTTCCACT 60.307 47.826 0.00 0.00 0.00 4.00
1763 1882 3.774144 TCCACTGAGGAGCTCTTCA 57.226 52.632 25.20 25.20 43.07 3.02
1768 1887 2.435069 CACTGAGGAGCTCTTCATCCAT 59.565 50.000 26.72 11.61 35.77 3.41
1773 1892 1.767681 GGAGCTCTTCATCCATGAGGT 59.232 52.381 14.64 0.00 39.18 3.85
1776 1895 3.047115 AGCTCTTCATCCATGAGGTCAT 58.953 45.455 0.00 0.00 38.19 3.06
1804 1923 3.921119 TGCCACTTTGAACACATCATC 57.079 42.857 0.00 0.00 38.03 2.92
1849 1974 3.879295 CGGTGGATGCATCTGAATACTTT 59.121 43.478 25.28 0.00 0.00 2.66
1852 1977 3.561310 TGGATGCATCTGAATACTTTCGC 59.439 43.478 25.28 5.33 34.39 4.70
1858 1983 4.435518 GCATCTGAATACTTTCGCGTGAAA 60.436 41.667 21.87 21.87 41.69 2.69
1859 1984 5.727791 GCATCTGAATACTTTCGCGTGAAAT 60.728 40.000 23.26 15.58 42.90 2.17
1861 1986 6.236017 TCTGAATACTTTCGCGTGAAATTT 57.764 33.333 23.26 16.64 42.90 1.82
1865 1990 3.328237 ACTTTCGCGTGAAATTTCGTT 57.672 38.095 23.26 2.94 42.90 3.85
1867 1992 3.480668 ACTTTCGCGTGAAATTTCGTTTG 59.519 39.130 23.26 12.06 42.90 2.93
1870 1995 2.113289 CGCGTGAAATTTCGTTTGGTT 58.887 42.857 13.34 0.00 0.00 3.67
1881 2006 3.322211 TCGTTTGGTTGTATCATCCGT 57.678 42.857 0.00 0.00 0.00 4.69
1897 2022 1.199327 TCCGTCGAGACAAAGCTACTG 59.801 52.381 4.02 0.00 0.00 2.74
1906 2031 0.097674 CAAAGCTACTGATGGTGCGC 59.902 55.000 0.00 0.00 0.00 6.09
1913 2038 3.963687 CTGATGGTGCGCTGGAGCA 62.964 63.158 9.73 4.45 45.96 4.26
1969 2094 0.537143 AATTGCAGGTGTTCGAGGCA 60.537 50.000 0.00 0.00 0.00 4.75
1972 2097 1.739562 GCAGGTGTTCGAGGCAGAG 60.740 63.158 0.00 0.00 0.00 3.35
1992 2117 5.009410 CAGAGTTGCAAAAGAAAGAGTGGAT 59.991 40.000 0.00 0.00 0.00 3.41
1994 2119 6.429385 AGAGTTGCAAAAGAAAGAGTGGATAG 59.571 38.462 0.00 0.00 0.00 2.08
1999 2124 6.205464 TGCAAAAGAAAGAGTGGATAGAAGTG 59.795 38.462 0.00 0.00 0.00 3.16
2000 2125 6.428159 GCAAAAGAAAGAGTGGATAGAAGTGA 59.572 38.462 0.00 0.00 0.00 3.41
2010 2135 3.519510 TGGATAGAAGTGAAGGACTTGGG 59.480 47.826 0.00 0.00 45.48 4.12
2055 2180 4.950200 TTGCTCCAGGGCAATTGT 57.050 50.000 7.40 0.00 45.64 2.71
2068 2193 3.256631 GGGCAATTGTATCATCCACCATC 59.743 47.826 7.40 0.00 0.00 3.51
2077 2202 0.107993 CATCCACCATCGAGCACACT 60.108 55.000 0.00 0.00 0.00 3.55
2079 2204 1.184970 TCCACCATCGAGCACACTGA 61.185 55.000 0.00 0.00 0.00 3.41
2085 2210 2.340337 CATCGAGCACACTGACATCAA 58.660 47.619 0.00 0.00 0.00 2.57
2086 2211 2.070262 TCGAGCACACTGACATCAAG 57.930 50.000 0.00 0.00 0.00 3.02
2098 2223 0.905357 ACATCAAGTTCGGAGGAGGG 59.095 55.000 0.00 0.00 0.00 4.30
2155 2280 2.934932 TGGATCACAGCCAGCCCA 60.935 61.111 0.00 0.00 0.00 5.36
2183 2308 1.724623 GCTACGATTGCGACAAGTTCA 59.275 47.619 0.00 0.00 41.64 3.18
2186 2311 1.732259 ACGATTGCGACAAGTTCATCC 59.268 47.619 0.00 0.00 41.64 3.51
2267 2392 3.181451 ACTGAGTGAAGGTTGCTTCATGA 60.181 43.478 0.00 0.00 43.99 3.07
2278 2403 0.029035 GCTTCATGAGGAATGCAGCG 59.971 55.000 9.36 0.00 43.97 5.18
2299 2424 4.576463 GCGTCTGAATGGTTCTTTCCATAT 59.424 41.667 0.00 0.00 46.14 1.78
2315 2440 4.519213 TCCATATTGAAACCCGTTCGATT 58.481 39.130 0.00 0.00 40.34 3.34
2316 2441 4.334203 TCCATATTGAAACCCGTTCGATTG 59.666 41.667 0.00 0.00 40.34 2.67
2317 2442 4.497340 CCATATTGAAACCCGTTCGATTGG 60.497 45.833 0.00 0.00 40.34 3.16
2321 2446 2.299582 TGAAACCCGTTCGATTGGAGTA 59.700 45.455 5.08 0.00 39.30 2.59
2418 2543 6.257630 GGAACAACATAGTTTGCAAACAATGT 59.742 34.615 36.46 28.11 41.30 2.71
2419 2544 6.826893 ACAACATAGTTTGCAAACAATGTC 57.173 33.333 36.46 14.91 41.30 3.06
2428 2553 1.522668 CAAACAATGTCTGCCTCCGA 58.477 50.000 0.00 0.00 0.00 4.55
2429 2554 1.879380 CAAACAATGTCTGCCTCCGAA 59.121 47.619 0.00 0.00 0.00 4.30
2438 2563 5.607939 TGTCTGCCTCCGAAATCTATTTA 57.392 39.130 0.00 0.00 0.00 1.40
2442 2567 6.315393 GTCTGCCTCCGAAATCTATTTAAACA 59.685 38.462 0.00 0.00 0.00 2.83
2443 2568 6.538742 TCTGCCTCCGAAATCTATTTAAACAG 59.461 38.462 0.00 0.00 0.00 3.16
2448 2573 8.726988 CCTCCGAAATCTATTTAAACAGTTTCA 58.273 33.333 0.48 0.00 0.00 2.69
2449 2574 9.543018 CTCCGAAATCTATTTAAACAGTTTCAC 57.457 33.333 0.48 4.61 0.00 3.18
2467 2592 9.188588 CAGTTTCACTATTTCTAACACGACTAA 57.811 33.333 0.00 0.00 0.00 2.24
2468 2593 9.754382 AGTTTCACTATTTCTAACACGACTAAA 57.246 29.630 0.00 0.00 0.00 1.85
2516 2641 7.798596 AGTTGCACATTTTGAGATATAGAGG 57.201 36.000 0.00 0.00 0.00 3.69
2525 2650 7.615582 TTTTGAGATATAGAGGTGCACAAAG 57.384 36.000 20.43 0.00 0.00 2.77
2533 2658 4.778534 AGAGGTGCACAAAGAAATCATG 57.221 40.909 20.43 0.00 0.00 3.07
2569 2694 2.677836 GTTAAGATGTGCAATCGCCTCA 59.322 45.455 0.00 0.00 37.32 3.86
2572 2697 1.674441 AGATGTGCAATCGCCTCATTG 59.326 47.619 0.00 0.00 37.32 2.82
2592 2717 8.684386 TCATTGTACATTTCTAACACCAAAGA 57.316 30.769 0.00 0.00 0.00 2.52
2594 2719 9.912634 CATTGTACATTTCTAACACCAAAGATT 57.087 29.630 0.00 0.00 0.00 2.40
2600 2725 8.908903 ACATTTCTAACACCAAAGATTTACACA 58.091 29.630 0.00 0.00 0.00 3.72
2601 2726 9.743057 CATTTCTAACACCAAAGATTTACACAA 57.257 29.630 0.00 0.00 0.00 3.33
2604 2729 9.959749 TTCTAACACCAAAGATTTACACAATTC 57.040 29.630 0.00 0.00 0.00 2.17
2615 2740 8.659925 AGATTTACACAATTCAAAAATGTGCA 57.340 26.923 7.59 0.00 32.12 4.57
2621 2746 6.257630 ACACAATTCAAAAATGTGCAACTACC 59.742 34.615 7.59 0.00 38.04 3.18
2622 2747 6.479660 CACAATTCAAAAATGTGCAACTACCT 59.520 34.615 0.00 0.00 38.04 3.08
2624 2749 5.843673 TTCAAAAATGTGCAACTACCTGA 57.156 34.783 0.00 0.00 38.04 3.86
2629 2754 4.771590 AATGTGCAACTACCTGATTGTG 57.228 40.909 0.00 0.00 38.04 3.33
2634 2759 2.484264 GCAACTACCTGATTGTGGTCAC 59.516 50.000 0.00 0.00 38.88 3.67
2642 2767 4.062293 CCTGATTGTGGTCACGTAAAGAA 58.938 43.478 0.00 0.00 0.00 2.52
2677 2803 8.364142 AGGATTGTCTAACTGAGATTACATAGC 58.636 37.037 0.00 0.00 36.29 2.97
2678 2804 8.144478 GGATTGTCTAACTGAGATTACATAGCA 58.856 37.037 0.00 0.00 36.29 3.49
2679 2805 9.534565 GATTGTCTAACTGAGATTACATAGCAA 57.465 33.333 0.00 0.00 36.29 3.91
2680 2806 9.890629 ATTGTCTAACTGAGATTACATAGCAAA 57.109 29.630 0.00 0.00 36.29 3.68
2681 2807 9.719355 TTGTCTAACTGAGATTACATAGCAAAA 57.281 29.630 0.00 0.00 36.29 2.44
2682 2808 9.719355 TGTCTAACTGAGATTACATAGCAAAAA 57.281 29.630 0.00 0.00 36.29 1.94
2688 2814 9.448438 ACTGAGATTACATAGCAAAAATGTACA 57.552 29.630 0.00 0.00 39.04 2.90
2721 2847 8.786826 TTTCTTAGAACAAGTGAAGTCTTTCA 57.213 30.769 0.00 0.00 40.92 2.69
2722 2848 8.425577 TTCTTAGAACAAGTGAAGTCTTTCAG 57.574 34.615 0.00 0.00 43.66 3.02
2723 2849 7.782049 TCTTAGAACAAGTGAAGTCTTTCAGA 58.218 34.615 0.00 0.00 43.66 3.27
2724 2850 8.424918 TCTTAGAACAAGTGAAGTCTTTCAGAT 58.575 33.333 0.00 0.00 43.66 2.90
2725 2851 6.857777 AGAACAAGTGAAGTCTTTCAGATG 57.142 37.500 0.00 0.00 43.66 2.90
2726 2852 6.586344 AGAACAAGTGAAGTCTTTCAGATGA 58.414 36.000 8.40 0.00 43.66 2.92
2727 2853 7.222872 AGAACAAGTGAAGTCTTTCAGATGAT 58.777 34.615 8.40 0.00 43.66 2.45
2728 2854 6.798315 ACAAGTGAAGTCTTTCAGATGATG 57.202 37.500 8.40 0.00 43.66 3.07
2729 2855 6.528321 ACAAGTGAAGTCTTTCAGATGATGA 58.472 36.000 8.40 0.00 43.66 2.92
2730 2856 7.166851 ACAAGTGAAGTCTTTCAGATGATGAT 58.833 34.615 8.40 0.00 43.66 2.45
2731 2857 7.119407 ACAAGTGAAGTCTTTCAGATGATGATG 59.881 37.037 8.40 0.00 43.66 3.07
2732 2858 6.944096 AGTGAAGTCTTTCAGATGATGATGA 58.056 36.000 0.00 0.00 43.66 2.92
2733 2859 7.566569 AGTGAAGTCTTTCAGATGATGATGAT 58.433 34.615 0.00 0.00 43.66 2.45
2734 2860 7.496263 AGTGAAGTCTTTCAGATGATGATGATG 59.504 37.037 0.00 0.00 43.66 3.07
2735 2861 7.494952 GTGAAGTCTTTCAGATGATGATGATGA 59.505 37.037 0.00 0.00 43.66 2.92
2736 2862 8.211629 TGAAGTCTTTCAGATGATGATGATGAT 58.788 33.333 0.00 0.00 38.37 2.45
2737 2863 7.971183 AGTCTTTCAGATGATGATGATGATG 57.029 36.000 0.00 0.00 37.89 3.07
2738 2864 7.736893 AGTCTTTCAGATGATGATGATGATGA 58.263 34.615 0.00 0.00 37.89 2.92
2739 2865 8.379331 AGTCTTTCAGATGATGATGATGATGAT 58.621 33.333 0.00 0.00 37.89 2.45
2740 2866 8.447053 GTCTTTCAGATGATGATGATGATGATG 58.553 37.037 0.00 0.00 37.89 3.07
2741 2867 8.375506 TCTTTCAGATGATGATGATGATGATGA 58.624 33.333 0.00 0.00 37.89 2.92
2742 2868 9.171877 CTTTCAGATGATGATGATGATGATGAT 57.828 33.333 0.00 0.00 37.89 2.45
2743 2869 8.498054 TTCAGATGATGATGATGATGATGATG 57.502 34.615 0.00 0.00 37.89 3.07
2744 2870 7.851228 TCAGATGATGATGATGATGATGATGA 58.149 34.615 0.00 0.00 31.12 2.92
2745 2871 8.489489 TCAGATGATGATGATGATGATGATGAT 58.511 33.333 0.00 0.00 31.12 2.45
2746 2872 8.557864 CAGATGATGATGATGATGATGATGATG 58.442 37.037 0.00 0.00 0.00 3.07
2747 2873 8.489489 AGATGATGATGATGATGATGATGATGA 58.511 33.333 0.00 0.00 0.00 2.92
2748 2874 8.674263 ATGATGATGATGATGATGATGATGAG 57.326 34.615 0.00 0.00 0.00 2.90
2749 2875 7.851228 TGATGATGATGATGATGATGATGAGA 58.149 34.615 0.00 0.00 0.00 3.27
2750 2876 7.984050 TGATGATGATGATGATGATGATGAGAG 59.016 37.037 0.00 0.00 0.00 3.20
2751 2877 7.482169 TGATGATGATGATGATGATGAGAGA 57.518 36.000 0.00 0.00 0.00 3.10
2752 2878 7.551585 TGATGATGATGATGATGATGAGAGAG 58.448 38.462 0.00 0.00 0.00 3.20
2753 2879 7.397476 TGATGATGATGATGATGATGAGAGAGA 59.603 37.037 0.00 0.00 0.00 3.10
2754 2880 7.164230 TGATGATGATGATGATGAGAGAGAG 57.836 40.000 0.00 0.00 0.00 3.20
2755 2881 6.948886 TGATGATGATGATGATGAGAGAGAGA 59.051 38.462 0.00 0.00 0.00 3.10
2756 2882 6.827586 TGATGATGATGATGAGAGAGAGAG 57.172 41.667 0.00 0.00 0.00 3.20
2757 2883 6.544650 TGATGATGATGATGAGAGAGAGAGA 58.455 40.000 0.00 0.00 0.00 3.10
2758 2884 6.657541 TGATGATGATGATGAGAGAGAGAGAG 59.342 42.308 0.00 0.00 0.00 3.20
2759 2885 6.190346 TGATGATGATGAGAGAGAGAGAGA 57.810 41.667 0.00 0.00 0.00 3.10
2760 2886 6.235664 TGATGATGATGAGAGAGAGAGAGAG 58.764 44.000 0.00 0.00 0.00 3.20
2761 2887 5.892524 TGATGATGAGAGAGAGAGAGAGA 57.107 43.478 0.00 0.00 0.00 3.10
2762 2888 5.861727 TGATGATGAGAGAGAGAGAGAGAG 58.138 45.833 0.00 0.00 0.00 3.20
2763 2889 5.603813 TGATGATGAGAGAGAGAGAGAGAGA 59.396 44.000 0.00 0.00 0.00 3.10
2764 2890 5.541953 TGATGAGAGAGAGAGAGAGAGAG 57.458 47.826 0.00 0.00 0.00 3.20
2765 2891 5.211201 TGATGAGAGAGAGAGAGAGAGAGA 58.789 45.833 0.00 0.00 0.00 3.10
2766 2892 5.303845 TGATGAGAGAGAGAGAGAGAGAGAG 59.696 48.000 0.00 0.00 0.00 3.20
2767 2893 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
2768 2894 5.462240 TGAGAGAGAGAGAGAGAGAGAGAT 58.538 45.833 0.00 0.00 0.00 2.75
2769 2895 5.303845 TGAGAGAGAGAGAGAGAGAGAGATG 59.696 48.000 0.00 0.00 0.00 2.90
2770 2896 5.462240 AGAGAGAGAGAGAGAGAGAGATGA 58.538 45.833 0.00 0.00 0.00 2.92
2771 2897 5.901853 AGAGAGAGAGAGAGAGAGAGATGAA 59.098 44.000 0.00 0.00 0.00 2.57
2772 2898 5.923204 AGAGAGAGAGAGAGAGAGATGAAC 58.077 45.833 0.00 0.00 0.00 3.18
2773 2899 5.664908 AGAGAGAGAGAGAGAGAGATGAACT 59.335 44.000 0.00 0.00 0.00 3.01
2774 2900 6.157645 AGAGAGAGAGAGAGAGAGATGAACTT 59.842 42.308 0.00 0.00 0.00 2.66
2775 2901 6.352516 AGAGAGAGAGAGAGAGATGAACTTC 58.647 44.000 0.00 0.00 0.00 3.01
2776 2902 6.065976 AGAGAGAGAGAGAGATGAACTTCA 57.934 41.667 0.00 0.00 0.00 3.02
2777 2903 6.484288 AGAGAGAGAGAGAGATGAACTTCAA 58.516 40.000 0.00 0.00 0.00 2.69
2778 2904 6.947733 AGAGAGAGAGAGAGATGAACTTCAAA 59.052 38.462 0.00 0.00 0.00 2.69
2779 2905 7.616935 AGAGAGAGAGAGAGATGAACTTCAAAT 59.383 37.037 0.00 0.00 0.00 2.32
2780 2906 7.549839 AGAGAGAGAGAGATGAACTTCAAATG 58.450 38.462 0.00 0.00 0.00 2.32
2781 2907 7.396907 AGAGAGAGAGAGATGAACTTCAAATGA 59.603 37.037 0.00 0.00 0.00 2.57
2782 2908 7.549839 AGAGAGAGAGATGAACTTCAAATGAG 58.450 38.462 0.00 0.00 0.00 2.90
2783 2909 7.396907 AGAGAGAGAGATGAACTTCAAATGAGA 59.603 37.037 0.00 0.00 0.00 3.27
2784 2910 7.549839 AGAGAGAGATGAACTTCAAATGAGAG 58.450 38.462 0.00 0.00 0.00 3.20
2785 2911 7.396907 AGAGAGAGATGAACTTCAAATGAGAGA 59.603 37.037 0.00 0.00 0.00 3.10
2786 2912 7.905265 AGAGAGATGAACTTCAAATGAGAGAA 58.095 34.615 0.00 0.00 0.00 2.87
2787 2913 7.818930 AGAGAGATGAACTTCAAATGAGAGAAC 59.181 37.037 0.00 0.00 0.00 3.01
2788 2914 7.448420 AGAGATGAACTTCAAATGAGAGAACA 58.552 34.615 0.00 0.00 0.00 3.18
2789 2915 7.935755 AGAGATGAACTTCAAATGAGAGAACAA 59.064 33.333 0.00 0.00 0.00 2.83
2790 2916 8.097078 AGATGAACTTCAAATGAGAGAACAAG 57.903 34.615 0.00 0.00 0.00 3.16
2791 2917 7.935755 AGATGAACTTCAAATGAGAGAACAAGA 59.064 33.333 0.00 0.00 0.00 3.02
2795 3337 8.917415 AACTTCAAATGAGAGAACAAGAAAAC 57.083 30.769 0.00 0.00 0.00 2.43
2797 3339 8.186821 ACTTCAAATGAGAGAACAAGAAAACTG 58.813 33.333 0.00 0.00 0.00 3.16
2811 3353 8.451908 ACAAGAAAACTGTAGCAATAGAAAGT 57.548 30.769 0.00 0.00 0.00 2.66
2856 3398 3.947910 AATGGTTGCATGGTTTCTCAG 57.052 42.857 0.00 0.00 0.00 3.35
2904 3449 5.470437 GGTTGTCCTCCTTTAAAGTCTCAAG 59.530 44.000 14.03 3.81 0.00 3.02
2910 3455 6.013725 TCCTCCTTTAAAGTCTCAAGCATACA 60.014 38.462 14.03 0.00 0.00 2.29
2911 3456 6.825721 CCTCCTTTAAAGTCTCAAGCATACAT 59.174 38.462 14.03 0.00 0.00 2.29
2912 3457 7.337942 CCTCCTTTAAAGTCTCAAGCATACATT 59.662 37.037 14.03 0.00 0.00 2.71
2913 3458 8.635765 TCCTTTAAAGTCTCAAGCATACATTT 57.364 30.769 14.03 0.00 0.00 2.32
2941 3486 3.905784 GCTGGCTGCATAAAATGATACC 58.094 45.455 11.80 0.00 42.31 2.73
2943 3488 4.558095 GCTGGCTGCATAAAATGATACCAG 60.558 45.833 11.80 13.71 42.67 4.00
2951 3496 6.095300 TGCATAAAATGATACCAGTGGTTGAG 59.905 38.462 22.49 0.00 37.09 3.02
2964 3509 7.402054 ACCAGTGGTTGAGATATAAAATGTCA 58.598 34.615 9.70 0.00 27.29 3.58
2985 3530 4.886489 TCAAACACAATGGACACATCTCAA 59.114 37.500 0.00 0.00 35.94 3.02
2992 3537 2.849942 TGGACACATCTCAACCACAAG 58.150 47.619 0.00 0.00 0.00 3.16
2998 3543 5.819991 ACACATCTCAACCACAAGGATATT 58.180 37.500 0.00 0.00 38.69 1.28
3009 3554 4.269183 CACAAGGATATTGTGGCCTGTAA 58.731 43.478 3.32 0.00 44.33 2.41
3026 3571 8.750298 TGGCCTGTAAATAATATAGACTAGAGC 58.250 37.037 3.32 0.00 0.00 4.09
3034 3579 8.550710 AATAATATAGACTAGAGCTTCGTCGT 57.449 34.615 0.00 0.00 33.10 4.34
3037 3582 7.959689 ATATAGACTAGAGCTTCGTCGTAAA 57.040 36.000 0.00 0.00 33.10 2.01
3038 3583 4.339439 AGACTAGAGCTTCGTCGTAAAC 57.661 45.455 0.00 0.00 33.10 2.01
3039 3584 3.126686 AGACTAGAGCTTCGTCGTAAACC 59.873 47.826 0.00 0.00 33.10 3.27
3040 3585 2.816087 ACTAGAGCTTCGTCGTAAACCA 59.184 45.455 0.00 0.00 0.00 3.67
3041 3586 2.349297 AGAGCTTCGTCGTAAACCAG 57.651 50.000 0.00 0.00 0.00 4.00
3043 3588 2.816087 AGAGCTTCGTCGTAAACCAGTA 59.184 45.455 0.00 0.00 0.00 2.74
3056 3623 5.984926 CGTAAACCAGTAGTTCACTTAACCA 59.015 40.000 0.00 0.00 37.88 3.67
3059 3626 7.891498 AAACCAGTAGTTCACTTAACCATTT 57.109 32.000 0.00 0.00 37.88 2.32
3062 3629 6.831868 ACCAGTAGTTCACTTAACCATTTTGT 59.168 34.615 0.00 0.00 39.03 2.83
3073 3640 7.115236 CACTTAACCATTTTGTGATGACATGTG 59.885 37.037 1.15 0.00 30.13 3.21
3082 3650 2.615447 GTGATGACATGTGTATGGGCAG 59.385 50.000 1.15 0.00 38.66 4.85
3083 3651 2.239402 TGATGACATGTGTATGGGCAGT 59.761 45.455 1.15 0.00 38.66 4.40
3106 3674 2.642139 CGAAAGCTTGTCAATGGCAT 57.358 45.000 0.00 0.00 0.00 4.40
3107 3675 2.256174 CGAAAGCTTGTCAATGGCATG 58.744 47.619 0.00 0.00 0.00 4.06
3108 3676 2.352030 CGAAAGCTTGTCAATGGCATGT 60.352 45.455 0.00 0.00 0.00 3.21
3109 3677 3.248266 GAAAGCTTGTCAATGGCATGTC 58.752 45.455 0.00 0.00 0.00 3.06
3110 3678 2.211250 AGCTTGTCAATGGCATGTCT 57.789 45.000 0.00 0.00 0.00 3.41
3111 3679 1.816835 AGCTTGTCAATGGCATGTCTG 59.183 47.619 0.00 0.00 0.00 3.51
3112 3680 1.135199 GCTTGTCAATGGCATGTCTGG 60.135 52.381 0.00 0.00 0.00 3.86
3120 3688 2.609825 GGCATGTCTGGCTATCACG 58.390 57.895 0.00 0.00 44.27 4.35
3121 3689 0.104855 GGCATGTCTGGCTATCACGA 59.895 55.000 0.00 0.00 44.27 4.35
3122 3690 1.473257 GGCATGTCTGGCTATCACGAA 60.473 52.381 0.00 0.00 44.27 3.85
3123 3691 2.487934 GCATGTCTGGCTATCACGAAT 58.512 47.619 0.00 0.00 0.00 3.34
3124 3692 3.554960 GGCATGTCTGGCTATCACGAATA 60.555 47.826 0.00 0.00 44.27 1.75
3125 3693 4.248859 GCATGTCTGGCTATCACGAATAT 58.751 43.478 0.00 0.00 0.00 1.28
3153 3721 8.811017 TGTTTTGTACACCCATCATAAATGATT 58.189 29.630 2.65 0.00 44.70 2.57
3158 3726 6.564709 ACACCCATCATAAATGATTCATCG 57.435 37.500 2.65 0.00 44.70 3.84
3198 3767 9.979578 AAAAGCATGTAAATGATGTTACTCAAA 57.020 25.926 0.00 0.00 35.41 2.69
3211 3780 8.201464 TGATGTTACTCAAACTCTAACACTCAA 58.799 33.333 0.00 0.00 38.99 3.02
3212 3781 8.958119 ATGTTACTCAAACTCTAACACTCAAA 57.042 30.769 0.00 0.00 38.99 2.69
3225 3794 5.772825 AACACTCAAACATGTTGCTACAT 57.227 34.783 12.82 8.03 45.81 2.29
3227 3796 4.216257 ACACTCAAACATGTTGCTACATCC 59.784 41.667 12.82 0.00 43.07 3.51
3232 3801 2.346803 ACATGTTGCTACATCCGTGAC 58.653 47.619 10.98 0.00 43.07 3.67
3245 3814 4.083696 ACATCCGTGACAATTTTTCGTACC 60.084 41.667 0.00 0.00 0.00 3.34
3246 3815 2.475864 TCCGTGACAATTTTTCGTACCG 59.524 45.455 0.00 0.00 0.00 4.02
3250 3819 4.376615 CGTGACAATTTTTCGTACCGATGT 60.377 41.667 0.00 0.00 35.23 3.06
3263 3832 5.852229 TCGTACCGATGTTAATTGTTTTTGC 59.148 36.000 0.00 0.00 0.00 3.68
3288 3857 9.278734 GCTTAAATAGTCAAAGTTAGATTGCAC 57.721 33.333 0.00 0.00 0.00 4.57
3299 3868 4.929808 AGTTAGATTGCACGTTCCTAACAG 59.070 41.667 17.48 0.00 40.72 3.16
3308 3877 4.552355 CACGTTCCTAACAGTGACATGTA 58.448 43.478 0.00 0.00 37.78 2.29
3355 3924 9.706691 TTCTCTACAAAAATACACTAGTTCTGG 57.293 33.333 0.00 0.00 0.00 3.86
3356 3925 8.311836 TCTCTACAAAAATACACTAGTTCTGGG 58.688 37.037 0.00 0.00 0.00 4.45
3357 3926 7.391620 TCTACAAAAATACACTAGTTCTGGGG 58.608 38.462 0.00 0.00 0.00 4.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.626045 AACGACATGAAAATTCTCCTTATTTTC 57.374 29.630 0.00 11.96 45.55 2.29
3 4 9.626045 GAACGACATGAAAATTCTCCTTATTTT 57.374 29.630 0.00 0.00 37.77 1.82
4 5 7.962918 CGAACGACATGAAAATTCTCCTTATTT 59.037 33.333 0.00 0.00 0.00 1.40
5 6 7.119262 ACGAACGACATGAAAATTCTCCTTATT 59.881 33.333 0.00 0.00 0.00 1.40
6 7 6.594159 ACGAACGACATGAAAATTCTCCTTAT 59.406 34.615 0.00 0.00 0.00 1.73
9 10 4.315803 ACGAACGACATGAAAATTCTCCT 58.684 39.130 0.00 0.00 0.00 3.69
10 11 4.663636 ACGAACGACATGAAAATTCTCC 57.336 40.909 0.00 0.00 0.00 3.71
11 12 7.891782 TGTATACGAACGACATGAAAATTCTC 58.108 34.615 0.00 0.00 0.00 2.87
12 13 7.821595 TGTATACGAACGACATGAAAATTCT 57.178 32.000 0.00 0.00 0.00 2.40
21 22 5.104562 ACGATCATGTATACGAACGACAT 57.895 39.130 14.26 0.00 34.11 3.06
22 23 4.541085 ACGATCATGTATACGAACGACA 57.459 40.909 14.26 0.00 32.48 4.35
23 24 7.006298 CAGATTACGATCATGTATACGAACGAC 59.994 40.741 14.26 5.93 34.60 4.34
30 31 7.637709 TGCAACAGATTACGATCATGTATAC 57.362 36.000 0.00 0.00 34.60 1.47
40 41 2.159430 GTGTGCATGCAACAGATTACGA 59.841 45.455 24.58 0.00 0.00 3.43
48 49 1.154814 ACGTACGTGTGCATGCAACA 61.155 50.000 24.58 19.31 0.00 3.33
50 51 1.567050 CACGTACGTGTGCATGCAA 59.433 52.632 34.48 10.26 40.91 4.08
51 52 3.239231 CACGTACGTGTGCATGCA 58.761 55.556 34.48 18.46 40.91 3.96
66 67 1.337118 AGCTAGCTAGGGATCTGCAC 58.663 55.000 17.69 2.20 0.00 4.57
144 145 4.498520 CGTCGAGCGGATGCAGGT 62.499 66.667 0.00 0.00 46.23 4.00
324 325 1.729484 TGCAAGAGCGAGAACGACG 60.729 57.895 0.00 0.00 46.23 5.12
325 326 1.775962 GTGCAAGAGCGAGAACGAC 59.224 57.895 0.00 0.00 46.23 4.34
326 327 1.729484 CGTGCAAGAGCGAGAACGA 60.729 57.895 0.00 0.00 46.23 3.85
436 437 4.819761 GCCAGGATGAGCGTCGCA 62.820 66.667 21.09 0.00 39.69 5.10
495 499 1.037579 ACGGAGTGATCATCAGGCGA 61.038 55.000 0.00 0.00 42.51 5.54
562 566 2.125106 GTGGACCTGGGCATCGAC 60.125 66.667 0.00 0.00 0.00 4.20
626 630 4.819761 GAGCTGCATCGGCGTCCA 62.820 66.667 6.85 1.62 45.35 4.02
669 673 1.594293 CAACTTCACACCTCGCCGT 60.594 57.895 0.00 0.00 0.00 5.68
691 695 6.435277 TGGATCGTTGGTAACTTAAGTCTAGT 59.565 38.462 8.95 0.00 37.61 2.57
701 705 1.349688 TGGCTTGGATCGTTGGTAACT 59.650 47.619 0.00 0.00 37.61 2.24
702 706 1.467342 GTGGCTTGGATCGTTGGTAAC 59.533 52.381 0.00 0.00 0.00 2.50
703 707 1.816074 GTGGCTTGGATCGTTGGTAA 58.184 50.000 0.00 0.00 0.00 2.85
704 708 0.390603 CGTGGCTTGGATCGTTGGTA 60.391 55.000 0.00 0.00 0.00 3.25
760 780 0.378962 CTCTCGTCCAGTCATCCGAC 59.621 60.000 0.00 0.00 42.95 4.79
766 786 1.000771 CCTCCCTCTCGTCCAGTCA 60.001 63.158 0.00 0.00 0.00 3.41
802 822 6.818644 GTGTAGGATCCACGATGCATATAATT 59.181 38.462 15.82 0.00 32.78 1.40
804 824 5.480422 AGTGTAGGATCCACGATGCATATAA 59.520 40.000 15.82 0.00 37.88 0.98
816 836 0.686441 CCGGGTCAGTGTAGGATCCA 60.686 60.000 15.82 0.00 35.14 3.41
858 882 2.103094 TGGACCATGGATTAGAGCTTCG 59.897 50.000 21.47 0.00 0.00 3.79
909 933 0.701303 GACTACACGCGAACGAACAG 59.299 55.000 15.93 2.00 43.93 3.16
910 934 0.993251 CGACTACACGCGAACGAACA 60.993 55.000 15.93 0.00 43.93 3.18
911 935 0.993746 ACGACTACACGCGAACGAAC 60.994 55.000 15.93 0.00 43.93 3.95
912 936 0.316937 AACGACTACACGCGAACGAA 60.317 50.000 15.93 0.00 43.93 3.85
913 937 0.993251 CAACGACTACACGCGAACGA 60.993 55.000 15.93 0.00 43.93 3.85
915 939 0.428618 GACAACGACTACACGCGAAC 59.571 55.000 15.93 0.00 36.70 3.95
916 940 0.661187 GGACAACGACTACACGCGAA 60.661 55.000 15.93 0.00 36.70 4.70
917 941 1.081906 GGACAACGACTACACGCGA 60.082 57.895 15.93 0.00 36.70 5.87
918 942 2.084681 GGGACAACGACTACACGCG 61.085 63.158 3.53 3.53 36.70 6.01
919 943 2.084681 CGGGACAACGACTACACGC 61.085 63.158 0.00 0.00 36.70 5.34
920 944 0.318107 AACGGGACAACGACTACACG 60.318 55.000 0.00 0.00 37.61 4.49
921 945 1.856802 AAACGGGACAACGACTACAC 58.143 50.000 0.00 0.00 37.61 2.90
922 946 3.940209 ATAAACGGGACAACGACTACA 57.060 42.857 0.00 0.00 37.61 2.74
923 947 4.558860 GTGTATAAACGGGACAACGACTAC 59.441 45.833 0.00 0.00 37.61 2.73
924 948 4.217334 TGTGTATAAACGGGACAACGACTA 59.783 41.667 0.00 0.00 37.61 2.59
925 949 3.005684 TGTGTATAAACGGGACAACGACT 59.994 43.478 0.00 0.00 37.61 4.18
926 950 3.121778 GTGTGTATAAACGGGACAACGAC 59.878 47.826 0.00 0.00 37.61 4.34
927 951 3.316283 GTGTGTATAAACGGGACAACGA 58.684 45.455 0.00 0.00 37.61 3.85
928 952 2.090967 CGTGTGTATAAACGGGACAACG 59.909 50.000 0.00 0.00 36.17 4.10
929 953 3.059166 ACGTGTGTATAAACGGGACAAC 58.941 45.455 7.14 0.00 43.96 3.32
930 954 3.383620 ACGTGTGTATAAACGGGACAA 57.616 42.857 7.14 0.00 43.96 3.18
931 955 3.755905 TCTACGTGTGTATAAACGGGACA 59.244 43.478 7.14 0.00 43.96 4.02
932 956 4.098416 GTCTACGTGTGTATAAACGGGAC 58.902 47.826 7.14 10.11 43.96 4.46
933 957 4.009675 AGTCTACGTGTGTATAAACGGGA 58.990 43.478 7.14 2.13 43.96 5.14
934 958 4.361451 AGTCTACGTGTGTATAAACGGG 57.639 45.455 7.14 0.00 43.96 5.28
935 959 6.021153 GCTAAAGTCTACGTGTGTATAAACGG 60.021 42.308 7.14 0.00 43.96 4.44
936 960 6.744537 AGCTAAAGTCTACGTGTGTATAAACG 59.255 38.462 0.00 0.00 45.15 3.60
937 961 7.045096 CGAGCTAAAGTCTACGTGTGTATAAAC 60.045 40.741 0.00 0.00 0.00 2.01
938 962 6.963242 CGAGCTAAAGTCTACGTGTGTATAAA 59.037 38.462 0.00 0.00 0.00 1.40
939 963 6.092670 ACGAGCTAAAGTCTACGTGTGTATAA 59.907 38.462 0.00 0.00 32.93 0.98
940 964 5.582269 ACGAGCTAAAGTCTACGTGTGTATA 59.418 40.000 0.00 0.00 32.93 1.47
941 965 4.394300 ACGAGCTAAAGTCTACGTGTGTAT 59.606 41.667 0.00 0.00 32.93 2.29
942 966 3.748048 ACGAGCTAAAGTCTACGTGTGTA 59.252 43.478 0.00 0.00 32.93 2.90
943 967 2.551459 ACGAGCTAAAGTCTACGTGTGT 59.449 45.455 0.00 0.00 32.93 3.72
944 968 2.909244 CACGAGCTAAAGTCTACGTGTG 59.091 50.000 11.01 0.00 43.47 3.82
945 969 3.198863 CACGAGCTAAAGTCTACGTGT 57.801 47.619 11.01 0.00 43.47 4.49
947 971 3.373439 CCTACACGAGCTAAAGTCTACGT 59.627 47.826 0.00 0.00 34.40 3.57
948 972 3.620374 TCCTACACGAGCTAAAGTCTACG 59.380 47.826 0.00 0.00 0.00 3.51
949 973 4.035441 CCTCCTACACGAGCTAAAGTCTAC 59.965 50.000 0.00 0.00 0.00 2.59
950 974 4.080695 TCCTCCTACACGAGCTAAAGTCTA 60.081 45.833 0.00 0.00 0.00 2.59
951 975 3.018149 CCTCCTACACGAGCTAAAGTCT 58.982 50.000 0.00 0.00 0.00 3.24
952 976 3.015327 TCCTCCTACACGAGCTAAAGTC 58.985 50.000 0.00 0.00 0.00 3.01
953 977 2.754002 GTCCTCCTACACGAGCTAAAGT 59.246 50.000 0.00 0.00 0.00 2.66
956 980 2.753452 CAAGTCCTCCTACACGAGCTAA 59.247 50.000 0.00 0.00 0.00 3.09
968 992 1.668151 GCACGTGTCCAAGTCCTCC 60.668 63.158 18.38 0.00 0.00 4.30
969 993 1.069090 TGCACGTGTCCAAGTCCTC 59.931 57.895 18.38 0.00 0.00 3.71
978 1038 2.150397 AGAGTTTAGGTGCACGTGTC 57.850 50.000 21.78 10.14 0.00 3.67
985 1045 7.769044 TCCAACTTATATGAAGAGTTTAGGTGC 59.231 37.037 0.00 0.00 31.63 5.01
997 1057 9.206690 TGCCCAAAATAATCCAACTTATATGAA 57.793 29.630 0.00 0.00 0.00 2.57
998 1058 8.774546 TGCCCAAAATAATCCAACTTATATGA 57.225 30.769 0.00 0.00 0.00 2.15
999 1059 8.641541 ACTGCCCAAAATAATCCAACTTATATG 58.358 33.333 0.00 0.00 0.00 1.78
1012 1120 4.832266 ACATGAACAGACTGCCCAAAATAA 59.168 37.500 0.00 0.00 0.00 1.40
1042 1150 7.278646 CGATTCATGGATCTGTGTTTCTTTAGA 59.721 37.037 12.27 0.00 0.00 2.10
1047 1155 4.080919 TCCGATTCATGGATCTGTGTTTCT 60.081 41.667 12.27 0.00 0.00 2.52
1048 1156 4.191544 TCCGATTCATGGATCTGTGTTTC 58.808 43.478 12.27 0.00 0.00 2.78
1063 1171 2.876091 TGACGTGATCAACTCCGATTC 58.124 47.619 10.08 0.01 33.02 2.52
1067 1175 0.716108 GCTTGACGTGATCAACTCCG 59.284 55.000 0.00 0.00 42.62 4.63
1084 1192 1.016130 CGATCAAAGCTGGACGTGCT 61.016 55.000 8.99 0.00 43.32 4.40
1085 1193 1.014044 TCGATCAAAGCTGGACGTGC 61.014 55.000 0.00 0.00 0.00 5.34
1087 1195 1.799181 CGATCGATCAAAGCTGGACGT 60.799 52.381 24.40 0.00 0.00 4.34
1088 1196 0.848942 CGATCGATCAAAGCTGGACG 59.151 55.000 24.40 3.91 0.00 4.79
1089 1197 1.590238 CACGATCGATCAAAGCTGGAC 59.410 52.381 24.34 0.00 0.00 4.02
1090 1198 1.926561 CACGATCGATCAAAGCTGGA 58.073 50.000 24.34 0.00 0.00 3.86
1091 1199 0.302890 GCACGATCGATCAAAGCTGG 59.697 55.000 24.34 9.17 0.00 4.85
1092 1200 0.302890 GGCACGATCGATCAAAGCTG 59.697 55.000 24.34 7.96 0.00 4.24
1093 1201 0.108186 TGGCACGATCGATCAAAGCT 60.108 50.000 24.34 0.00 0.00 3.74
1094 1202 0.940126 ATGGCACGATCGATCAAAGC 59.060 50.000 24.34 21.69 0.00 3.51
1095 1203 1.262417 CCATGGCACGATCGATCAAAG 59.738 52.381 24.34 14.01 0.00 2.77
1096 1204 1.298602 CCATGGCACGATCGATCAAA 58.701 50.000 24.34 3.37 0.00 2.69
1097 1205 0.532640 CCCATGGCACGATCGATCAA 60.533 55.000 24.34 6.51 0.00 2.57
1098 1206 1.069596 CCCATGGCACGATCGATCA 59.930 57.895 24.34 16.13 0.00 2.92
1127 1246 3.368571 GTGGCTGCTGGTCTTGCC 61.369 66.667 0.00 0.00 45.10 4.52
1156 1275 3.249189 TGTGGGAGGTCTGGCCAC 61.249 66.667 0.00 0.00 40.61 5.01
1171 1290 1.755008 GAGGCCGACTAGCTCCTGT 60.755 63.158 0.00 0.00 0.00 4.00
1226 1345 4.393693 GCAGACAGCCTCAAAGCT 57.606 55.556 0.00 0.00 46.45 3.74
1235 1354 3.900855 CCAGTCATGGCAGACAGC 58.099 61.111 15.95 0.00 40.52 4.40
1330 1449 4.484236 CGAAGCAGTAAATTTTGCCATCA 58.516 39.130 10.53 0.00 41.17 3.07
1399 1518 2.403987 CGACCGGAGTGCTCGTAG 59.596 66.667 9.46 0.00 0.00 3.51
1415 1534 2.590575 ACCGTGCAGGAACAACCG 60.591 61.111 8.24 0.00 45.00 4.44
1424 1543 0.108898 CCAGAGAGAAGACCGTGCAG 60.109 60.000 0.00 0.00 0.00 4.41
1428 1547 2.036089 GTGTTTCCAGAGAGAAGACCGT 59.964 50.000 0.00 0.00 0.00 4.83
1431 1550 3.394719 GGTGTGTTTCCAGAGAGAAGAC 58.605 50.000 0.00 0.00 0.00 3.01
1437 1556 0.472471 GGTGGGTGTGTTTCCAGAGA 59.528 55.000 0.00 0.00 33.13 3.10
1441 1560 1.063642 TCAATGGTGGGTGTGTTTCCA 60.064 47.619 0.00 0.00 0.00 3.53
1450 1569 0.914417 ACGGGATCTCAATGGTGGGT 60.914 55.000 0.00 0.00 0.00 4.51
1454 1573 1.950484 GCAACACGGGATCTCAATGGT 60.950 52.381 0.00 0.00 0.00 3.55
1459 1578 0.535335 GGTAGCAACACGGGATCTCA 59.465 55.000 0.00 0.00 0.00 3.27
1472 1591 1.079197 CGGTGCACTCATGGTAGCA 60.079 57.895 17.98 0.00 32.58 3.49
1522 1641 0.740868 CCATCAGCGTCACCGTCATT 60.741 55.000 0.00 0.00 36.15 2.57
1525 1644 2.509336 CCCATCAGCGTCACCGTC 60.509 66.667 0.00 0.00 36.15 4.79
1534 1653 2.541547 TAGCTGTGCCACCCATCAGC 62.542 60.000 0.00 7.76 43.11 4.26
1548 1667 0.027586 GGTTAAACGCGCCATAGCTG 59.972 55.000 5.73 0.00 36.60 4.24
1549 1668 0.391927 TGGTTAAACGCGCCATAGCT 60.392 50.000 5.73 0.00 36.60 3.32
1551 1670 1.668751 ACATGGTTAAACGCGCCATAG 59.331 47.619 13.75 11.02 40.68 2.23
1552 1671 1.740297 ACATGGTTAAACGCGCCATA 58.260 45.000 13.75 0.00 40.68 2.74
1573 1692 1.139989 ACGAGCACACAACGATCTTG 58.860 50.000 0.00 0.00 0.00 3.02
1580 1699 2.096218 GGAGATGAAACGAGCACACAAC 60.096 50.000 0.00 0.00 0.00 3.32
1621 1740 0.250727 ATGTGGTGTTGGTTCCTCCG 60.251 55.000 0.00 0.00 39.52 4.63
1630 1749 6.601741 AATGCAAAACTAAATGTGGTGTTG 57.398 33.333 0.00 0.00 36.70 3.33
1631 1750 7.622893 AAAATGCAAAACTAAATGTGGTGTT 57.377 28.000 0.00 0.00 0.00 3.32
1632 1751 8.900983 ATAAAATGCAAAACTAAATGTGGTGT 57.099 26.923 0.00 0.00 0.00 4.16
1633 1752 8.161610 CGATAAAATGCAAAACTAAATGTGGTG 58.838 33.333 0.00 0.00 0.00 4.17
1634 1753 7.330700 CCGATAAAATGCAAAACTAAATGTGGT 59.669 33.333 0.00 0.00 0.00 4.16
1635 1754 7.673776 GCCGATAAAATGCAAAACTAAATGTGG 60.674 37.037 0.00 0.00 0.00 4.17
1636 1755 7.172757 GCCGATAAAATGCAAAACTAAATGTG 58.827 34.615 0.00 0.00 0.00 3.21
1637 1756 6.312672 GGCCGATAAAATGCAAAACTAAATGT 59.687 34.615 0.00 0.00 0.00 2.71
1638 1757 6.238076 GGGCCGATAAAATGCAAAACTAAATG 60.238 38.462 0.00 0.00 0.00 2.32
1639 1758 5.815222 GGGCCGATAAAATGCAAAACTAAAT 59.185 36.000 0.00 0.00 0.00 1.40
1704 1823 1.066143 CACGGTGAAAGGCTATGTCCT 60.066 52.381 0.74 0.00 38.31 3.85
1750 1869 2.699321 CTCATGGATGAAGAGCTCCTCA 59.301 50.000 17.16 17.16 36.18 3.86
1780 1899 1.846007 TGTGTTCAAAGTGGCAAGGT 58.154 45.000 0.00 0.00 0.00 3.50
1790 1909 4.084066 CCGTTTCTCGATGATGTGTTCAAA 60.084 41.667 0.00 0.00 42.86 2.69
1804 1923 3.423154 GTGGCAGGCCGTTTCTCG 61.423 66.667 5.74 0.00 39.42 4.04
1831 1956 3.363378 CGCGAAAGTATTCAGATGCATCC 60.363 47.826 23.06 6.67 35.15 3.51
1835 1960 2.603110 TCACGCGAAAGTATTCAGATGC 59.397 45.455 15.93 0.00 35.15 3.91
1836 1961 4.840401 TTCACGCGAAAGTATTCAGATG 57.160 40.909 15.93 0.00 35.15 2.90
1849 1974 1.331138 ACCAAACGAAATTTCACGCGA 59.669 42.857 15.93 0.00 0.00 5.87
1852 1977 5.910166 TGATACAACCAAACGAAATTTCACG 59.090 36.000 17.99 8.24 0.00 4.35
1858 1983 4.698304 ACGGATGATACAACCAAACGAAAT 59.302 37.500 0.00 0.00 0.00 2.17
1859 1984 4.066490 ACGGATGATACAACCAAACGAAA 58.934 39.130 0.00 0.00 0.00 3.46
1861 1986 3.255725 GACGGATGATACAACCAAACGA 58.744 45.455 0.00 0.00 0.00 3.85
1865 1990 2.756207 TCTCGACGGATGATACAACCAA 59.244 45.455 0.00 0.00 0.00 3.67
1867 1992 2.098607 TGTCTCGACGGATGATACAACC 59.901 50.000 0.00 0.00 0.00 3.77
1870 1995 3.733988 GCTTTGTCTCGACGGATGATACA 60.734 47.826 0.00 0.00 0.00 2.29
1881 2006 2.826128 ACCATCAGTAGCTTTGTCTCGA 59.174 45.455 0.00 0.00 0.00 4.04
1897 2022 2.515523 ATGCTCCAGCGCACCATC 60.516 61.111 11.47 0.00 43.61 3.51
1906 2031 2.593978 CCACCAGGGATGCTCCAG 59.406 66.667 4.85 0.00 38.64 3.86
1921 2046 0.397394 TACGATGAATCCCGTCCCCA 60.397 55.000 1.38 0.00 39.86 4.96
1950 2075 0.537143 TGCCTCGAACACCTGCAATT 60.537 50.000 0.00 0.00 0.00 2.32
1952 2077 1.597854 CTGCCTCGAACACCTGCAA 60.598 57.895 0.00 0.00 0.00 4.08
1969 2094 4.526970 TCCACTCTTTCTTTTGCAACTCT 58.473 39.130 0.00 0.00 0.00 3.24
1972 2097 6.560253 TCTATCCACTCTTTCTTTTGCAAC 57.440 37.500 0.00 0.00 0.00 4.17
1976 2101 7.969536 TCACTTCTATCCACTCTTTCTTTTG 57.030 36.000 0.00 0.00 0.00 2.44
1992 2117 3.323979 GTCACCCAAGTCCTTCACTTCTA 59.676 47.826 0.00 0.00 44.14 2.10
1994 2119 2.495084 GTCACCCAAGTCCTTCACTTC 58.505 52.381 0.00 0.00 44.14 3.01
1999 2124 0.036875 CCTGGTCACCCAAGTCCTTC 59.963 60.000 0.00 0.00 41.27 3.46
2000 2125 0.697854 ACCTGGTCACCCAAGTCCTT 60.698 55.000 0.00 0.00 41.27 3.36
2010 2135 3.594134 CTGATGAAGAGAACCTGGTCAC 58.406 50.000 0.00 0.00 0.00 3.67
2044 2169 2.624838 GGTGGATGATACAATTGCCCTG 59.375 50.000 5.05 0.00 0.00 4.45
2055 2180 2.038659 TGTGCTCGATGGTGGATGATA 58.961 47.619 0.00 0.00 0.00 2.15
2068 2193 1.788258 ACTTGATGTCAGTGTGCTCG 58.212 50.000 0.00 0.00 0.00 5.03
2077 2202 1.550524 CCTCCTCCGAACTTGATGTCA 59.449 52.381 0.00 0.00 0.00 3.58
2079 2204 0.905357 CCCTCCTCCGAACTTGATGT 59.095 55.000 0.00 0.00 0.00 3.06
2085 2210 1.982938 CGGTTCCCTCCTCCGAACT 60.983 63.158 0.00 0.00 46.05 3.01
2086 2211 2.281295 ACGGTTCCCTCCTCCGAAC 61.281 63.158 9.75 0.00 46.05 3.95
2098 2223 2.804647 CCCAAAAGAAACACACGGTTC 58.195 47.619 0.00 0.00 39.29 3.62
2155 2280 1.431488 CGCAATCGTAGCACCTGCAT 61.431 55.000 0.00 0.00 45.16 3.96
2183 2308 4.103785 ACAATAGCTAGGAATGCACTGGAT 59.896 41.667 0.00 0.00 0.00 3.41
2186 2311 4.194640 ACACAATAGCTAGGAATGCACTG 58.805 43.478 0.00 0.00 0.00 3.66
2267 2392 1.376543 CATTCAGACGCTGCATTCCT 58.623 50.000 0.00 0.00 0.00 3.36
2278 2403 7.630242 TCAATATGGAAAGAACCATTCAGAC 57.370 36.000 5.55 0.00 47.00 3.51
2297 2422 3.936453 CTCCAATCGAACGGGTTTCAATA 59.064 43.478 3.83 0.00 33.24 1.90
2299 2424 2.147958 CTCCAATCGAACGGGTTTCAA 58.852 47.619 3.83 0.00 33.24 2.69
2388 2513 3.243234 TGCAAACTATGTTGTTCCGTTGG 60.243 43.478 0.00 0.00 0.00 3.77
2404 2529 2.796593 GAGGCAGACATTGTTTGCAAAC 59.203 45.455 30.95 30.95 43.96 2.93
2418 2543 6.411376 TGTTTAAATAGATTTCGGAGGCAGA 58.589 36.000 0.00 0.00 0.00 4.26
2419 2544 6.316390 ACTGTTTAAATAGATTTCGGAGGCAG 59.684 38.462 17.74 5.30 0.00 4.85
2467 2592 5.524646 TGGTCGACTAGAAACAACGATTTTT 59.475 36.000 16.46 0.00 35.57 1.94
2468 2593 5.051816 TGGTCGACTAGAAACAACGATTTT 58.948 37.500 16.46 0.00 35.57 1.82
2473 2598 3.378339 ACTTGGTCGACTAGAAACAACG 58.622 45.455 16.46 6.68 0.00 4.10
2557 2682 2.106477 TGTACAATGAGGCGATTGCA 57.894 45.000 7.38 0.00 45.35 4.08
2592 2717 8.891720 AGTTGCACATTTTTGAATTGTGTAAAT 58.108 25.926 15.51 13.25 43.58 1.40
2594 2719 7.840342 AGTTGCACATTTTTGAATTGTGTAA 57.160 28.000 12.08 12.08 41.56 2.41
2595 2720 7.436673 GGTAGTTGCACATTTTTGAATTGTGTA 59.563 33.333 13.78 8.94 42.04 2.90
2596 2721 6.257630 GGTAGTTGCACATTTTTGAATTGTGT 59.742 34.615 13.78 0.00 42.04 3.72
2597 2722 6.479660 AGGTAGTTGCACATTTTTGAATTGTG 59.520 34.615 9.94 9.94 42.59 3.33
2598 2723 6.479660 CAGGTAGTTGCACATTTTTGAATTGT 59.520 34.615 0.00 0.00 0.00 2.71
2599 2724 6.700960 TCAGGTAGTTGCACATTTTTGAATTG 59.299 34.615 0.00 0.00 0.00 2.32
2600 2725 6.815089 TCAGGTAGTTGCACATTTTTGAATT 58.185 32.000 0.00 0.00 0.00 2.17
2601 2726 6.403866 TCAGGTAGTTGCACATTTTTGAAT 57.596 33.333 0.00 0.00 0.00 2.57
2604 2729 5.984926 ACAATCAGGTAGTTGCACATTTTTG 59.015 36.000 0.00 0.00 0.00 2.44
2612 2737 2.105649 TGACCACAATCAGGTAGTTGCA 59.894 45.455 0.00 0.00 40.09 4.08
2615 2740 2.367567 ACGTGACCACAATCAGGTAGTT 59.632 45.455 0.00 0.00 43.88 2.24
2621 2746 5.862924 ATTCTTTACGTGACCACAATCAG 57.137 39.130 0.00 0.00 0.00 2.90
2622 2747 7.915293 ATTATTCTTTACGTGACCACAATCA 57.085 32.000 0.00 0.00 0.00 2.57
2662 2788 9.448438 TGTACATTTTTGCTATGTAATCTCAGT 57.552 29.630 0.00 0.00 39.46 3.41
2695 2821 9.226606 TGAAAGACTTCACTTGTTCTAAGAAAA 57.773 29.630 0.00 0.00 36.62 2.29
2696 2822 8.786826 TGAAAGACTTCACTTGTTCTAAGAAA 57.213 30.769 0.00 0.00 36.62 2.52
2697 2823 8.258007 TCTGAAAGACTTCACTTGTTCTAAGAA 58.742 33.333 0.00 0.00 38.67 2.52
2698 2824 7.782049 TCTGAAAGACTTCACTTGTTCTAAGA 58.218 34.615 0.00 0.00 38.67 2.10
2716 2842 8.553459 TCATCATCATCATCATCATCTGAAAG 57.447 34.615 0.00 0.00 37.44 2.62
2717 2843 8.950210 CATCATCATCATCATCATCATCTGAAA 58.050 33.333 0.00 0.00 37.44 2.69
2718 2844 8.321353 TCATCATCATCATCATCATCATCTGAA 58.679 33.333 0.00 0.00 37.44 3.02
2719 2845 7.851228 TCATCATCATCATCATCATCATCTGA 58.149 34.615 0.00 0.00 38.53 3.27
2720 2846 8.557864 CATCATCATCATCATCATCATCATCTG 58.442 37.037 0.00 0.00 0.00 2.90
2721 2847 8.489489 TCATCATCATCATCATCATCATCATCT 58.511 33.333 0.00 0.00 0.00 2.90
2722 2848 8.668510 TCATCATCATCATCATCATCATCATC 57.331 34.615 0.00 0.00 0.00 2.92
2723 2849 8.489489 TCTCATCATCATCATCATCATCATCAT 58.511 33.333 0.00 0.00 0.00 2.45
2724 2850 7.851228 TCTCATCATCATCATCATCATCATCA 58.149 34.615 0.00 0.00 0.00 3.07
2725 2851 8.200792 TCTCTCATCATCATCATCATCATCATC 58.799 37.037 0.00 0.00 0.00 2.92
2726 2852 8.083828 TCTCTCATCATCATCATCATCATCAT 57.916 34.615 0.00 0.00 0.00 2.45
2727 2853 7.397476 TCTCTCTCATCATCATCATCATCATCA 59.603 37.037 0.00 0.00 0.00 3.07
2728 2854 7.777095 TCTCTCTCATCATCATCATCATCATC 58.223 38.462 0.00 0.00 0.00 2.92
2729 2855 7.617723 TCTCTCTCTCATCATCATCATCATCAT 59.382 37.037 0.00 0.00 0.00 2.45
2730 2856 6.948886 TCTCTCTCTCATCATCATCATCATCA 59.051 38.462 0.00 0.00 0.00 3.07
2731 2857 7.338449 TCTCTCTCTCTCATCATCATCATCATC 59.662 40.741 0.00 0.00 0.00 2.92
2732 2858 7.179269 TCTCTCTCTCTCATCATCATCATCAT 58.821 38.462 0.00 0.00 0.00 2.45
2733 2859 6.544650 TCTCTCTCTCTCATCATCATCATCA 58.455 40.000 0.00 0.00 0.00 3.07
2734 2860 6.882678 TCTCTCTCTCTCTCATCATCATCATC 59.117 42.308 0.00 0.00 0.00 2.92
2735 2861 6.786122 TCTCTCTCTCTCTCATCATCATCAT 58.214 40.000 0.00 0.00 0.00 2.45
2736 2862 6.043474 TCTCTCTCTCTCTCTCATCATCATCA 59.957 42.308 0.00 0.00 0.00 3.07
2737 2863 6.470278 TCTCTCTCTCTCTCTCATCATCATC 58.530 44.000 0.00 0.00 0.00 2.92
2738 2864 6.271624 TCTCTCTCTCTCTCTCTCATCATCAT 59.728 42.308 0.00 0.00 0.00 2.45
2739 2865 5.603813 TCTCTCTCTCTCTCTCTCATCATCA 59.396 44.000 0.00 0.00 0.00 3.07
2740 2866 6.014755 TCTCTCTCTCTCTCTCTCTCATCATC 60.015 46.154 0.00 0.00 0.00 2.92
2741 2867 5.842874 TCTCTCTCTCTCTCTCTCTCATCAT 59.157 44.000 0.00 0.00 0.00 2.45
2742 2868 5.211201 TCTCTCTCTCTCTCTCTCTCATCA 58.789 45.833 0.00 0.00 0.00 3.07
2743 2869 5.538053 TCTCTCTCTCTCTCTCTCTCTCATC 59.462 48.000 0.00 0.00 0.00 2.92
2744 2870 5.462240 TCTCTCTCTCTCTCTCTCTCTCAT 58.538 45.833 0.00 0.00 0.00 2.90
2745 2871 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
2746 2872 5.538053 TCATCTCTCTCTCTCTCTCTCTCTC 59.462 48.000 0.00 0.00 0.00 3.20
2747 2873 5.462240 TCATCTCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
2748 2874 5.798125 TCATCTCTCTCTCTCTCTCTCTC 57.202 47.826 0.00 0.00 0.00 3.20
2749 2875 5.664908 AGTTCATCTCTCTCTCTCTCTCTCT 59.335 44.000 0.00 0.00 0.00 3.10
2750 2876 5.923204 AGTTCATCTCTCTCTCTCTCTCTC 58.077 45.833 0.00 0.00 0.00 3.20
2751 2877 5.965033 AGTTCATCTCTCTCTCTCTCTCT 57.035 43.478 0.00 0.00 0.00 3.10
2752 2878 6.115446 TGAAGTTCATCTCTCTCTCTCTCTC 58.885 44.000 0.08 0.00 0.00 3.20
2753 2879 6.065976 TGAAGTTCATCTCTCTCTCTCTCT 57.934 41.667 0.08 0.00 0.00 3.10
2754 2880 6.757897 TTGAAGTTCATCTCTCTCTCTCTC 57.242 41.667 6.36 0.00 0.00 3.20
2755 2881 7.396907 TCATTTGAAGTTCATCTCTCTCTCTCT 59.603 37.037 6.36 0.00 0.00 3.10
2756 2882 7.546358 TCATTTGAAGTTCATCTCTCTCTCTC 58.454 38.462 6.36 0.00 0.00 3.20
2757 2883 7.396907 TCTCATTTGAAGTTCATCTCTCTCTCT 59.603 37.037 6.36 0.00 0.00 3.10
2758 2884 7.546358 TCTCATTTGAAGTTCATCTCTCTCTC 58.454 38.462 6.36 0.00 0.00 3.20
2759 2885 7.396907 TCTCTCATTTGAAGTTCATCTCTCTCT 59.603 37.037 6.36 0.00 0.00 3.10
2760 2886 7.546358 TCTCTCATTTGAAGTTCATCTCTCTC 58.454 38.462 6.36 0.00 0.00 3.20
2761 2887 7.479352 TCTCTCATTTGAAGTTCATCTCTCT 57.521 36.000 6.36 0.00 0.00 3.10
2762 2888 7.601886 TGTTCTCTCATTTGAAGTTCATCTCTC 59.398 37.037 6.36 0.00 0.00 3.20
2763 2889 7.448420 TGTTCTCTCATTTGAAGTTCATCTCT 58.552 34.615 6.36 0.00 0.00 3.10
2764 2890 7.664082 TGTTCTCTCATTTGAAGTTCATCTC 57.336 36.000 6.36 0.00 0.00 2.75
2765 2891 7.935755 TCTTGTTCTCTCATTTGAAGTTCATCT 59.064 33.333 6.36 0.00 0.00 2.90
2766 2892 8.092521 TCTTGTTCTCTCATTTGAAGTTCATC 57.907 34.615 6.36 0.00 0.00 2.92
2767 2893 8.455903 TTCTTGTTCTCTCATTTGAAGTTCAT 57.544 30.769 6.36 0.00 0.00 2.57
2768 2894 7.864108 TTCTTGTTCTCTCATTTGAAGTTCA 57.136 32.000 0.08 0.08 0.00 3.18
2769 2895 9.014533 GTTTTCTTGTTCTCTCATTTGAAGTTC 57.985 33.333 0.00 0.00 0.00 3.01
2770 2896 8.743714 AGTTTTCTTGTTCTCTCATTTGAAGTT 58.256 29.630 0.00 0.00 0.00 2.66
2771 2897 8.186821 CAGTTTTCTTGTTCTCTCATTTGAAGT 58.813 33.333 0.00 0.00 0.00 3.01
2772 2898 8.186821 ACAGTTTTCTTGTTCTCTCATTTGAAG 58.813 33.333 0.00 0.00 0.00 3.02
2773 2899 8.055279 ACAGTTTTCTTGTTCTCTCATTTGAA 57.945 30.769 0.00 0.00 0.00 2.69
2774 2900 7.630242 ACAGTTTTCTTGTTCTCTCATTTGA 57.370 32.000 0.00 0.00 0.00 2.69
2775 2901 7.589221 GCTACAGTTTTCTTGTTCTCTCATTTG 59.411 37.037 0.00 0.00 0.00 2.32
2776 2902 7.283127 TGCTACAGTTTTCTTGTTCTCTCATTT 59.717 33.333 0.00 0.00 0.00 2.32
2777 2903 6.767902 TGCTACAGTTTTCTTGTTCTCTCATT 59.232 34.615 0.00 0.00 0.00 2.57
2778 2904 6.291377 TGCTACAGTTTTCTTGTTCTCTCAT 58.709 36.000 0.00 0.00 0.00 2.90
2779 2905 5.670485 TGCTACAGTTTTCTTGTTCTCTCA 58.330 37.500 0.00 0.00 0.00 3.27
2780 2906 6.604735 TTGCTACAGTTTTCTTGTTCTCTC 57.395 37.500 0.00 0.00 0.00 3.20
2781 2907 8.150945 TCTATTGCTACAGTTTTCTTGTTCTCT 58.849 33.333 0.00 0.00 0.00 3.10
2782 2908 8.311650 TCTATTGCTACAGTTTTCTTGTTCTC 57.688 34.615 0.00 0.00 0.00 2.87
2783 2909 8.677148 TTCTATTGCTACAGTTTTCTTGTTCT 57.323 30.769 0.00 0.00 0.00 3.01
2784 2910 9.387123 CTTTCTATTGCTACAGTTTTCTTGTTC 57.613 33.333 0.00 0.00 0.00 3.18
2785 2911 8.903820 ACTTTCTATTGCTACAGTTTTCTTGTT 58.096 29.630 0.00 0.00 0.00 2.83
2786 2912 8.451908 ACTTTCTATTGCTACAGTTTTCTTGT 57.548 30.769 0.00 0.00 0.00 3.16
2787 2913 9.387123 GAACTTTCTATTGCTACAGTTTTCTTG 57.613 33.333 0.00 0.00 0.00 3.02
2788 2914 8.568794 GGAACTTTCTATTGCTACAGTTTTCTT 58.431 33.333 0.00 0.00 0.00 2.52
2789 2915 7.175119 GGGAACTTTCTATTGCTACAGTTTTCT 59.825 37.037 0.00 0.00 0.00 2.52
2790 2916 7.040686 TGGGAACTTTCTATTGCTACAGTTTTC 60.041 37.037 0.00 0.00 0.00 2.29
2791 2917 6.775629 TGGGAACTTTCTATTGCTACAGTTTT 59.224 34.615 0.00 0.00 0.00 2.43
2795 3337 8.506168 TTTATGGGAACTTTCTATTGCTACAG 57.494 34.615 0.00 0.00 0.00 2.74
2824 3366 5.417811 CATGCAACCATTAAAAGCCACATA 58.582 37.500 0.00 0.00 0.00 2.29
2866 3408 9.628500 AAGGAGGACAACCAATAATATAACTTC 57.372 33.333 0.00 0.00 38.94 3.01
2877 3419 5.953571 AGACTTTAAAGGAGGACAACCAAT 58.046 37.500 19.14 0.00 38.94 3.16
2878 3420 5.104277 TGAGACTTTAAAGGAGGACAACCAA 60.104 40.000 19.14 0.00 38.94 3.67
2881 3426 5.049336 GCTTGAGACTTTAAAGGAGGACAAC 60.049 44.000 19.14 8.78 0.00 3.32
2886 3431 6.173339 TGTATGCTTGAGACTTTAAAGGAGG 58.827 40.000 19.14 4.76 0.00 4.30
2923 3468 4.261741 CCACTGGTATCATTTTATGCAGCC 60.262 45.833 0.00 0.00 0.00 4.85
2941 3486 9.559958 GTTTGACATTTTATATCTCAACCACTG 57.440 33.333 0.00 0.00 0.00 3.66
2943 3488 9.341899 GTGTTTGACATTTTATATCTCAACCAC 57.658 33.333 0.00 0.00 30.37 4.16
2951 3496 9.853555 TGTCCATTGTGTTTGACATTTTATATC 57.146 29.630 0.00 0.00 33.09 1.63
2964 3509 4.037923 GGTTGAGATGTGTCCATTGTGTTT 59.962 41.667 0.00 0.00 0.00 2.83
2973 3518 2.154462 CCTTGTGGTTGAGATGTGTCC 58.846 52.381 0.00 0.00 0.00 4.02
2974 3519 3.126001 TCCTTGTGGTTGAGATGTGTC 57.874 47.619 0.00 0.00 34.23 3.67
2998 3543 9.596308 TCTAGTCTATATTATTTACAGGCCACA 57.404 33.333 5.01 0.00 0.00 4.17
3009 3554 8.550710 ACGACGAAGCTCTAGTCTATATTATT 57.449 34.615 0.00 0.00 33.10 1.40
3020 3565 3.119919 ACTGGTTTACGACGAAGCTCTAG 60.120 47.826 0.00 0.00 0.00 2.43
3021 3566 2.816087 ACTGGTTTACGACGAAGCTCTA 59.184 45.455 0.00 0.00 0.00 2.43
3026 3571 4.380974 GTGAACTACTGGTTTACGACGAAG 59.619 45.833 0.00 0.00 38.41 3.79
3029 3574 3.893720 AGTGAACTACTGGTTTACGACG 58.106 45.455 0.00 0.00 45.36 5.12
3030 3575 6.144563 GGTTAAGTGAACTACTGGTTTACGAC 59.855 42.308 0.00 0.00 45.36 4.34
3033 3578 7.974482 ATGGTTAAGTGAACTACTGGTTTAC 57.026 36.000 0.00 0.00 42.45 2.01
3034 3579 8.983702 AAATGGTTAAGTGAACTACTGGTTTA 57.016 30.769 0.00 0.00 40.26 2.01
3037 3582 6.831868 ACAAAATGGTTAAGTGAACTACTGGT 59.168 34.615 0.00 0.00 40.26 4.00
3038 3583 7.012894 TCACAAAATGGTTAAGTGAACTACTGG 59.987 37.037 0.00 0.00 40.26 4.00
3039 3584 7.925993 TCACAAAATGGTTAAGTGAACTACTG 58.074 34.615 0.00 0.00 40.26 2.74
3040 3585 8.567948 CATCACAAAATGGTTAAGTGAACTACT 58.432 33.333 0.00 0.00 41.86 2.57
3041 3586 8.564574 TCATCACAAAATGGTTAAGTGAACTAC 58.435 33.333 0.00 0.00 41.86 2.73
3043 3588 7.068103 TGTCATCACAAAATGGTTAAGTGAACT 59.932 33.333 0.00 0.00 41.86 3.01
3056 3623 5.394443 GCCCATACACATGTCATCACAAAAT 60.394 40.000 0.00 0.00 35.64 1.82
3059 3626 3.016031 GCCCATACACATGTCATCACAA 58.984 45.455 0.00 0.00 35.64 3.33
3062 3629 2.239402 ACTGCCCATACACATGTCATCA 59.761 45.455 0.00 0.00 0.00 3.07
3073 3640 1.009829 CTTTCGCTCACTGCCCATAC 58.990 55.000 0.00 0.00 38.78 2.39
3100 3668 1.541889 CGTGATAGCCAGACATGCCAT 60.542 52.381 0.00 0.00 0.00 4.40
3101 3669 0.179076 CGTGATAGCCAGACATGCCA 60.179 55.000 0.00 0.00 0.00 4.92
3102 3670 0.104855 TCGTGATAGCCAGACATGCC 59.895 55.000 0.00 0.00 0.00 4.40
3103 3671 1.939974 TTCGTGATAGCCAGACATGC 58.060 50.000 0.00 0.00 0.00 4.06
3104 3672 5.119743 CACATATTCGTGATAGCCAGACATG 59.880 44.000 0.00 0.00 39.34 3.21
3105 3673 5.221521 ACACATATTCGTGATAGCCAGACAT 60.222 40.000 0.48 0.00 39.34 3.06
3106 3674 4.099419 ACACATATTCGTGATAGCCAGACA 59.901 41.667 0.48 0.00 39.34 3.41
3107 3675 4.621991 ACACATATTCGTGATAGCCAGAC 58.378 43.478 0.48 0.00 39.34 3.51
3108 3676 4.937201 ACACATATTCGTGATAGCCAGA 57.063 40.909 0.48 0.00 39.34 3.86
3109 3677 5.991328 AAACACATATTCGTGATAGCCAG 57.009 39.130 0.48 0.00 39.34 4.85
3110 3678 5.645929 ACAAAACACATATTCGTGATAGCCA 59.354 36.000 0.48 0.00 39.34 4.75
3111 3679 6.119144 ACAAAACACATATTCGTGATAGCC 57.881 37.500 0.48 0.00 39.34 3.93
3112 3680 7.680982 TGTACAAAACACATATTCGTGATAGC 58.319 34.615 0.00 0.00 39.34 2.97
3176 3745 8.454106 AGAGTTTGAGTAACATCATTTACATGC 58.546 33.333 0.00 0.00 39.30 4.06
3198 3767 5.126067 AGCAACATGTTTGAGTGTTAGAGT 58.874 37.500 8.77 0.00 36.48 3.24
3207 3776 3.436704 ACGGATGTAGCAACATGTTTGAG 59.563 43.478 8.77 0.00 46.49 3.02
3211 3780 2.742053 GTCACGGATGTAGCAACATGTT 59.258 45.455 4.92 4.92 46.49 2.71
3212 3781 2.289382 TGTCACGGATGTAGCAACATGT 60.289 45.455 0.00 0.00 46.49 3.21
3263 3832 9.478019 CGTGCAATCTAACTTTGACTATTTAAG 57.522 33.333 0.00 0.00 0.00 1.85
3270 3839 4.213482 GGAACGTGCAATCTAACTTTGACT 59.787 41.667 0.00 0.00 0.00 3.41
3288 3857 8.132995 TGTATATACATGTCACTGTTAGGAACG 58.867 37.037 11.62 0.00 0.00 3.95
3330 3899 8.311836 CCCAGAACTAGTGTATTTTTGTAGAGA 58.688 37.037 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.