>input_sequence_53637
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-------------------------------------------------------------------ATATAAGTTGGAT
TATTTTGGGCAGTCTGTTCATGTTCGGTGTCTAAAGAAACACAGATCCATGAATCGGAGTTGATCACGTCAAGCACGTCC
AGCTTTGA-----------TCGATCGTGCCATGGGTCTCTGTCTCGGCAAGACCAGCAGCCACGGCCCTTCACCGTGGCC
AGACCTCCCACAGGAGCTAGTCGGCCTCATCCTCCGCCGCGTGCCGTCCCATGCCGACCGCATCAGCTTTGAGGCTGTCT
GCCATGACTGGCGCCTCGCCGCGAAGCAGCAGCGGCCGCCAGCCATGCCATGGATCAACCTCCGAGTCGGTTCCTACCAG
AGCATCGTTGATGGCAAAATTTACTGCTTCGCCGCGCCGAGCTGCCGCCCCCGTGCCTCCTTCGGCAGCTGGTTTCTCTA
CGAGCACTCCGGTCGGTTGTTCCTGCACGGTCTTCTCTCTGGAAACACACCCACCATTGAGATCCCGTGTTGCTACCATG
AGTGCACCGACGATTGCGACGTCGCCGCCCATGACCGTGGAATGACGGTGACGCTGATGGGTGGCACAGCTATGGCGCGT
TTAACCATGTACAAGATCGTTGTGTGCTCGTTTCATCTCCTCGCGGCGATCCTCTACACCGGAGGAACCAACACCACATT
TAGTTTTGCATTTTATCGGCCCGGCACGCTTTCATGGTCACTCCTTCGCGCGTCTGATTACAAGGACATAGCCTTTCACC
GTGGACGGATCTTTGCTCTCACTTCCACTGAGGAGCTCTTCATCCATGAGGTCATGCAACCTTGCCACTTTGAACACATC
ATCGAGAAACGGCCTGCCA------CGGCGGCGGTGGATGCATCTGAATACTTTCGCGTGAAATTTCGTTTGGTTGTATC
ATCCGTCGAGACAAAGCTACTGATGGTGCGCTGGAGCATCCCTGGTGGGGACGGGATTCATCGTACCATGATGAAATTGC
AGGTGTTCGAGGCAGAGTTGCAAAAGAAAGAGTGGATAGAAGTGAAGGACTTGGGTGACCAGGTTCTCTTCATCAGCAAC
ACTTGCTCCAGGGCAATTGTATCATCCACCATCGAGCACACTGACATCAAGTTCGGAGGAGGGAACCGTGTGTTTCTTTT
GGGCACCGACTGGGCATGCCAGTGGATCACAGCCAGCCCATGCAGGTGCTACGATTGCGACAAGTTCATCCAGTGCATTC
CTAGCTATTGTGTATATGACATGGCAAGTGGCACGGTTAGCGTTGCTTCACTGAGTGAAGGTTGCTTCATGAGGAATGCA
GCGTCTGAATGGTTCTTTCCATATTGAAACCCGTTCGATTGGAGTAGTATATATAAGAATTGGAATGTTCCTTTTTATGA
TA------------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G068200
AAGAAAATAAGGAGAATTTTCATGTCGTTCGTATACATGATCGTAATCTGTTGCATGCACACGTACGTGCAGATCCCTAG
CTAGCTTAGCTACGACCACCTCCACGAGACGCTGCAGTCTTTGTCCCTCACCGGCTCTTCTTCCACCTGCATCCGCTCGA
CGCCCTCGTCGTCCGAGCGCGAGCGCACCTCTTGGGTCGCCGACTCGGCTGCACCCGTTGCGCGTCCGCCACGAACTCGG
CGATCGCCGCGGCGAGCACGCCGGGGTCGACGCCCAGGTCCACCGGCCCGGCGTCGCTGATCCTGGCGCCACGCATCATT
GCCTCGTCGTTCTCGCTCTTGCACGGCCCCCGCACCTGCCGCCGTTCTGCCGCCGCCACGAACTCCGCGACCCCCGCGTC
GAGCACGCGGGGGTCGATGCCGAGGTCCACAGGCTTTGCGACGCTCATCCTGGCGTTCCGCGTCATGCCCCCGTCTTCGC
GTTCCCACGGCC---GCGTCGCCTGATGATCACTCCGTTCCTCGGCGGCCACGGATTTGCCGACCTCCGCGGCGAGAACG
CCGGAGTCGATGCCCAGGTCCACGGGCTTTGCGGCTCTGATCCTGGCGCTGCGCCTTATGCCTCCGGCCTGGACGCCGAT
GCAGCTCGCCGTCTTCTGCTTGTCCATTGCCGACGGCGAGGTGTGAAGTTGACGACTAGACTTAAGTTACCAAC------
---GATCCAAGCCACGCTCTCGA-------TCGATCCAAGAAGACGTGCGCCGGATCGGGTCGGATGACTGGACGAGAGG
GAGGGGGAGGATGGAGCGAGTAATTATATGCATCGTGGATCCTACACTGACCCGGAGTCGGAATCCGAGTTGG----GCA
CCGAAGCTCTAATCCATGGTCCATGCACAAGATCAGATGACCGAATTCGCTACTGTTCGTTCGCGTGTAGTCGTTGTCCC
GTTTATACACACGTAGACTTTAGCTCGTGTAGGA------------------------------------GGACTTGGAC
ACGTGCACCTAAACTCTTC------------------------------------------------ATATAAGTTGGAT
TATTTTGGGCAGTCTGTTCATGTTCGGTGTCTAAAGAAACACAGATCCATGAATCGGAGTTGATCACGTCAAGCACGTCC
AGCTTTGA-----------TCGATCGTGCCATGGGTCTCTGTCTCGGCAAGACCAGCAGCCACGGCCCTTCACCGTGGCC
AGACCTCCCACAGGAGCTAGTCGGCCTCATCCTCCGCCGCGTGCCGTCCCATGCCGACCGCATCAGCTTTGAGGCTGTCT
GCCATGACTGGCGCCTCGCCGCGAAGCAGCAGCGGCCGCCAGCCATGCCATGGATCAACCTCCGAGTCGGTTCCTACCAG
AGCATCGTTGATGGCAAAATTTACTGCTTCGCCGCGCCGAGCTGCCGCCCCCGTGCCTCCTTCGGCAGCTGGTTTCTCTA
CGAGCACTCCGGTCGGTTGTTCCTGCACGGTCTTCTCTCTGGAAACACACCCACCATTGAGATCCCGTGTTGCTACCATG
AGTGCACCGACGATTGCGACGTCGCCGCCCATGACCGTGGAATGACGGTGACGCTGATGGGTGGCACAGCTATGGCGCGT
TTAACCATGTACAAGATCGTTGTGTGCTCGTTTCATCTCCTCGCGGCGATCCTCTACACCGGAGGAACCAACACCACATT
TAGTTTTGCATTTTATCGGCCCGGCACGCTTTCATGGTCACTCCTTCGCGCGTCTGATTACAAGGACATAGCCTTTCACC
GTGGACGGATCTTTGCTCTCACTTCCACTGAGGAGCTCTTCATCCATGAGGTCATGCAACCTTGCCACTTTGAACACATC
ATCGAGAAACGGCCTGCCA------CGGCGGCGGTGGATGCATCTGAATACTTTCGCGTGAAATTTCGTTTGGTTGTATC
ATCCGTCGAGACAAAGCTACTGATGGTGCGCTGGAGCATCCCTGGTGGGGACGGGATTCATCGTACCATGATGAAATTGC
AGGTGTTCGAGGCAGAGTTGCAAAAGAAAGAGTGGATAGAAGTGAAGGACTTGGGTGACCAGGTTCTCTTCATCAGCAAC
ACTTGCTCCAGGGCAATTGTATCATCCACCATCGAGCACACTGACATCAAGTTCGGAGGAGGGAACCGTGTGTTTCTTTT
GGGCACCGACTGGGCATGCCAGTGGATCACAGCCAGCCCATGCAGGTGCTACGATTGCGACAAGTTCATCCAGTGCATTC
CTAGCTATTGTGTATATGACATGGCAAGTGGCACGGTTAGCGTTGCTTCACTGAGTGAAGGTTGCTTCATGAGGAATGCA
GCGTCTGAATGGTTCTTTCCATATTGAAACCCGTTCGATTGGAGTAGTATATATAAGAATTGGAATGTTCCTTTTTATGA
TAAAAAACTAGCATAAAATGATATCATGAGTTCCAACGGAACAACATAGTTTGCAAACAATGTCTGCCTCCGAAATCTAT
TTAAACAGTTTCACTATTTCTAACACGACTAAAAAATCGTTGTTTCTAGTCGACCAAGTTGCACATTTTGAGATATAGAG
GTGCACAAAGAAATCATGTGCAAATTTAGTTTGTTAAGATGTGCAATCGCCTCATTGTACATTTCTAACACCAAAGATTT
ACACAATTCAAAAATGTGCAACTACCTGATTGTGGTCACGTAAAGAA-TAATTATTAGGATTGTCTAACTGAGATTACAT
AGCAAAAATGTACATTCATATTTTCTTAGAACAAGTGAAGTCTTTCAGATGATGATGATGATGATGATGATGAGAGAGAG
AGAGAGAGAGAGATGAACTTCAAATGAGAGAACAAGA-------------------------------------------
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-----------------------------------------------------AAACTGTAGCAATAGAAAGTTCCCATA
AAATTTATGTGGCTTTTAATGGTTGCATGGTTTCTCAGTAGAAAATGGAAGTTATATTAT---TGGTTGTCCTCCTTTAA
AGTCTCAAGCATACATTTTTTTTTGCTGGCTGCATAAAATGATACCAGTGGTTGAGATATAAAATGTCAAACACAATGGA
CACATCTCAACCACAAGGATATTGTGGCCTGTAAATAATATAGACTAGAGCTTCGTCGTAAACCAGTA------------
----------GTTCACTTAACCATTTTGTGATGACATGTG-TATGGGCAGTGAGCGAAAGCTTGTCAATGGCATGTCTGG
CTATCACGAATATGTGTTTTGTACACCCATCATAAATGATTCATCGC-TATGGGCAAGAAAAAAGCATGTAAATGATGTT
ACTCAAACTCTAACACTCAAACATGTTGCTACATCCGTGACAATTTTTCGTACCGATGTTAATTGTTTTTGCTTAAATAG
TCAAAGTTAGATTGCACGTTCCTAACAGTGACATGTATATACAAACAAAGATACTATTTCTCTACAAAAATACACTAGTT
CTGGGG
>chr1A_15
AATTTGCTA---------------TCGTTCCTATACATGAGCGTAATCCGGAGCATGCACACGTACATGCAGATCCCTAG
CTAGCTTAGCTACGACCACCTCCACGAGACGCTGCAGTCGTTGTCCCTCACCGGCTCTTCTTCCGCATGCATCCGCTCGA
CGCCCTCGTCGTCCGAGCGCGAGCGCACCTCTTGGGTCGCCGGTCCGCCTGCCCCCGTTGTGCGTCCGCCACGAACTCGG
CGACCGCCGCGGCGAGCACGCCGGGGTCGACGCCCAGGTCCACCGGCCCGGCGACGCTGATCCTGGCGCCACGCGTCACT
GCCT---CGTTCTCGCTCTTGCACGGCCCCCGCGCCTGCCCCCGTTCCGCGTCCGCCACGAACTCCGCGACCGCCGCGGC
GAGCACGCCGGGGTCGACGCCCAGGTCCACCGGCCCGGCGACGCTGATCCTCGCGTTCCGCGTCGTGCCCCCGTCTTCGC
GCTCCCACGGCCGCGGCGCC------TGATCACTCCGTTCCTCGGCGGCCACGGGTTTGCCGACCTCCGCGGCGAGAAGG
CCGGAATCGATGCCCAGGTCCACGGCCTTTGCGGCTCTGATCCTGGCGCTGCGCCTTATGCCTCCGGCGCGGACGCCGAG
GCAGCTCGCCGTCTTCTGCTTGTCCATTGCCGTCGGCGAGGTGTGAAGTTGACGGCTAGACTTACTCGCCAACGATATGA
TATGATCCAAGCCACGCTCTCGA-------TCGATCCAAGAAGACGTGCGCCGGATCGGATCGGAGGACTGGGCGAGAGG
GAGGGGGAGGATGGAGCGAGTCA-------------GGATCCTACACTGACCTGGAGTCGGAATCCGAGTGGGTGGGTCC
CTTAAG--------------------------------------------------------------------------
-----------------CTCTAGCTCGTGTAAAAATTTTGGACACTGACACCCCCTAACAGAACCTACTCGGACTTGAAC
ACGTACTACTGGTGCCAAACGTTCATAAGGAAACACGATTAATATAAGTTTGATCTACAGAAACTTTATATAAGTTGGAG
TATTTTGGGCAGTCTGTTCATGTTCGGTGCCTAATTAAACACAGATCCATCAATAGGAGTTGATCACGTCTGTCGTTGTT
GCTGGAGAAGGAGAACGTCTCGATCGTGCCATGGGTCTCTGTCTCCGCAAGACCAGCAGCCATGGCCCTTCACCATGGCC
CGACCTCCCGCAGGAGCTAGTCGGCCTCATCCTCCGCCGCCTGCCCTCCCATGCCGACCGCCTCGCCGCA----------
-----------------------AAGCAGCAGCGGCCGCCAGCCATGCCATGGATCAACCTCCATGTCGGTTCCTACCAG
AGCATCGTCGACGGCAAAATTTACCGCTTCGCCGCGCCGGACTCCCACCCCCATGCCTCCTTCGGCAGCTGGCTTCTGTA
CGAGCACTCCGGTGGGTTGTTCGTGCGCGATCTTCGCTCAGGAAACACGCCCGCCATCGAGATCCCGTGTCGCTACCATG
AGTGCACAGACGATTGCGACGTCGCCGCCCATGACCGTGGCATTACGGTGACACTGATGGGTGGCATGGGCATGGCGCGT
TTAACCATGTATAAGATCATTGTGTGCTCATTTCATCTCCTCGCGGCGATCCTCTACACTGGAGGAACG---------TT
TAGTTTTGCATTTTATCGGCCCGGCACGCTTTCATGGTCACTCCTTCGCGCGTCTGATTACAGGGACATAGCCTTTCACC
GTGGACGGATCTTCGCTCTCACTTCCACCGAGGAGCTCTTCGTCCACGAGGCCACGCAGCCTTGCCACGTTGAACACATC
ATTGAGAAACGGCCTGCCACAGCGGCGTCGGCGGTCGATTTATCTGAATACTTGCGGGTGAAGCTCCGTCTAGTCGTATC
ATCCGACGAGACAAAGCTACTAATGGTGCGATGGAGCGTCCCTGGCGGGGACGGGATTCATCGTACCATGATGAGACTGC
AGGTGTTCGAGGCGGATTTGGAAAAGAAAGAGTGGACACAAGTCCAGGACTTGGATGACCAGGTTCTCTTCATCAGCAAC
ACTTGCTCGAGGGCAATTGGATCATCCACCATGGAGCACACGGGCATCAGATTCGGAGGAGGCAACCGTGTGTTTCTTTT
GGGCACCGACTGGGCATGCCAGTGGATCACAGCCAGCCCCTGCAGGTGCTACGATTGCGACAAGTTCGTCGAGTGCATTC
CTAGCTATTGTGTATATGACATGGCAAGTGGCACGGTTAGCGTTGCTTCACTGAGTGAAGGTTGCTTCATGCGGAATGCA
GCTTCTGAATGGTTCTTTCCACACTGAAACCCGTTCGATCATAGTTGTATATATAAGCACTGTAATGCTCCTTTTTTACG
ATGAC-ACTAGCATAAAATGATATCATGAGTTGCAACGGAACAACATATTTTGCAAACAATGCATGCCTCCGGTATCTAT
TTGAACGATTTCTTTATTTCTAACACGACTAGGAAATTGTTGTTTCTAGTCGACCAAGTTGCACATTTTGAGATATAGAG
TTGCACAAAAAAATCATCTGCAAATTTAGTTTGTTAAGATGCGCAATCGCCTCGTTTTACATTTCTAACACCAAAGGTGC
CGCAC-TTAAAAAATGCGCGACTACACGGTTGTTGTCAGGTAAAGATTTAATTACTAGGATTGTTGACTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACAAGAAAATATAGCAATAGAAAGATCCCATA
AAATT-ATGTGGCTTTTAATGGTTGCATGGTTTCTCAATAGAAAATGAAAGTTATATTTGTTGTGTTTGTTCTCCTTTAA
AGTCTCAACCATAC----TTTTTTGCTAGCTGCATACGATGATACTAATGGTTGAAATATAAAATGTCGAACACAATCAA
CACATCTCAGCCACAAAGATATAGTGACCTATAGATAATATAGATGAGAGTTTGATCAAAAGTAGTTCACTTAACCTTCC
CGCAAAAAAGGTTCACTTAACCTTTCTGCGATGACATGTCATATGGGCACGGAGCGAAAGCTTGTCAGA-----------
-------------GTGTTTTGTACACCCATCATAAATGATGCATCACGTATGGGCAAGAAAAAA-CATGTAAATGATGTT
ACTCAATCTCTAACATTCAGTCATGTTGCTACACCTGTGA-AATTTTTCGTACTAATGCTAATTGTTTTTGTTTAAATGG
TCAAAGTTAGATTGCATGTTCCTAACAATGACATGTGTATACAAACAAAGATAGTATTGCTCTACAAAAATGCATTAATT
CT----
>chr1B_84
--------------------------------------------------------------------------------
---GCTTAGCTACGACGACCTCCACGAGACACTGCAGTCTTTGTCCCTCACCGGCTCTTCTTCCGCCTGCATCCGCTCGA
CGCCCTCGTCGTCCGAGAGCGGGTGCACCTCTTGGGTCGCCGGCTCGCCTGCCCCCGTTGTGCGTCCGCCACGAACTCGG
CTACCGCCGCGGCGAGCACGCCGGGGTCGACGCCCAGGTCCACCGGCCCGGCGACGCTGATCCTGGCGCCACGCATCATT
GCCT---CGTTCTCACTCTTGCACGGACCACGCGCCTGCCGCCGTTCTGCGGCCGCCACGAACTCCGCGACTCCAGCGGC
GAGCACGCCGGGGTCGATGCCGAGGTCCACAGGATTCGCGACGCTGATCCTCGCGTTCCGCGTCATGCCCGCGTCTTCGC
GCTCCCAGGACGGCAGCGCCGCCTGATGATCACTCCGTTCCTCGGCGGCCACGAATTTGCCGACCTCCGCGGCGAGAAGG
CCGGAATCGACGCCCAGGTCCACGGGCTTTGCGGCTCTGATCCTGGCGCTGCGCCTTATGCCTCCGGCCCGGACGCCGAT
GCAGCTCGCCGTCTTGTGCGTGTCCATTGCCGTCGGCGAGGTGTGAGGTTGACGGCTAGCCTTACTC-ACCAAC------
---GATCCAAGCCACGCTCTCGAGTCTCGATCGATCCAAGAAGACGCGCGCCGGATCGGATCGGAGGACTGGACGAGAGG
GAGTGCAAGGATCAAGCGAGTCTATATATGCATCGGGGATCCTACACTGACCTGGAGTCGGAATCCGAGTTGGTGGGGCA
CTGAAGCTCTAATCCATGGTCCATGCACAAGATCAGATGACCGAATTCGCTA----------------------------
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>SNPs
--SSSSS--SSSSSSSSSSSSSSS------S---------S-------S-SS--------------S-------------
----------------------------------------------------------------S---------------
------------------------------------------S----S----S-------S-------------------
---S-------------------------------------------------S--------------------------
----SSS--------------------------S----------------S---------------------------S-
--------S---------------------------S--------S-----S----------------------------
-S----------------S-----------------------------------------------------------S-
-----S---------------------------------------------------------------S----------
--------------------------------S---------------------S---------SSSS------------
-----------------------------------------------------------S-----S--------------
---------------------S-S-----------S----------------S---------------------------
-S--------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS--S-----------SS--------------------------------------------S--
----S-SS--SSSSS-SSS------------------------------------------------------------S
-----------------------------S----SS--------------S---S---------------SSS-SSSSSS
SSSSSS---------------------------------------S----------------S-----------S-----
S--------S------------------------------S----S---------------S--SS-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS----------------------------------------SS---------------
--------S--S------------S--------------SS--S--S-----S-------------------S----S--
-------------S--------S---S--S-----S---S--------S---S----S------------S---------
-------S--------------------------------S--S--------S-------------SS-SS---------
-----------S------S----------S-----------------------------S--------SSSSSSSSSS--
--------------------------------------------------------------S-----------------
-------------S--------------S------------S----S----S--S---S---------S-----------
--S------------------------S-------S---SS------------S--S-----SS-S---S-S--S-----
-----S---------------S--------S------S-------S----------------------------S-S---
-------------S--S---S---------------S-S----SS---------S-------------------------
--------S----------S------------S--------S-S-----SS-----------S-----------------
---------------------------------------S---------------------------S--S---------
-----------------------------------------------------------------------S--------
--S------------------S-S---------------SSS---S-----------S-S--S----S--------SSSS
SSS-SS--------------------------S---------------S-------------SS--------SS------
--S---SS----SS-----------------SS----S------------------------------------------
S--------S-------S-----------------------S-----------S--S-------------------S-SS
SSSSSS--S-------S--S-----SS-S----S----S-------S-------S---------SS-SS-SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
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--------------------------------------------------------S-S-------------S-------
-----S-------------------------------S---------S----------SS-----S----S---------
--------S-----SSSS---------S--------SS-------S-S-------S------------S--------SS-
---------S------S-----S---S---S--S----------SS----S--SS--SS--SSSSS-S------------
----------------------S--S--S----------S---------SS----------------SSSSSSSSSSSSS
SSSSSSSSSSSSS---------------------------S----S------------------S---------------
------S--------S---SS------------S-S----S------------SS---S------------S------S-
----------------S----------S--------S----------------S----S------------S--S--S--
--SSSS
>forward_951
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---------------------------------------------------ACTGTTCGTTCGCGTGTAGT---------
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>reverse_2124
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-------------------------------------------GAAGGACTTGGGTGACCAGG-----------------
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>forward_1051
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-----------------------------------------------------------------------GACTTGGAC
ACGTGCACCTA---------------------------------------------------------------------
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>reverse_2125
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--------------------------------------------AAGGACTTGGGTGACCAGGT----------------
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>forward_2031
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-----------CAAAGCTACTGATGGTGCGC-------------------------------------------------
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>reverse_3670
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---------------------------------------------------------------------GGCATGTCTGG
CTATCACGA-----------------------------------------------------------------------
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------
