Multiple sequence alignment - TraesCS1D01G067100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G067100 chr1D 100.000 4085 0 0 1 4085 48861784 48865868 0.000000e+00 7544.0
1 TraesCS1D01G067100 chr1D 93.950 562 31 3 2889 3448 48873169 48873729 0.000000e+00 846.0
2 TraesCS1D01G067100 chr1B 91.644 3698 237 29 355 4019 68741210 68744868 0.000000e+00 5051.0
3 TraesCS1D01G067100 chr1B 91.714 350 11 3 1 348 68740625 68740958 1.720000e-128 470.0
4 TraesCS1D01G067100 chr1A 95.098 2183 73 14 1359 3539 48771963 48774113 0.000000e+00 3408.0
5 TraesCS1D01G067100 chr1A 94.052 1160 52 10 219 1367 48770387 48771540 0.000000e+00 1744.0
6 TraesCS1D01G067100 chr1A 85.132 491 37 15 3536 4023 48777017 48777474 1.720000e-128 470.0
7 TraesCS1D01G067100 chr1A 94.578 166 7 1 1 164 48769098 48769263 5.240000e-64 255.0
8 TraesCS1D01G067100 chr5A 93.548 62 3 1 4024 4085 482766336 482766396 1.560000e-14 91.6
9 TraesCS1D01G067100 chr5A 97.959 49 1 0 4031 4079 30099592 30099544 7.280000e-13 86.1
10 TraesCS1D01G067100 chr7D 91.935 62 5 0 4024 4085 76973467 76973406 2.020000e-13 87.9
11 TraesCS1D01G067100 chr7D 93.220 59 4 0 4024 4082 568394107 568394165 2.020000e-13 87.9
12 TraesCS1D01G067100 chr7D 91.935 62 5 0 4024 4085 568395266 568395205 2.020000e-13 87.9
13 TraesCS1D01G067100 chr6A 91.803 61 5 0 4025 4085 97351683 97351623 7.280000e-13 86.1
14 TraesCS1D01G067100 chr6A 90.000 60 6 0 4024 4083 97350545 97350604 1.220000e-10 78.7
15 TraesCS1D01G067100 chr5D 89.062 64 6 1 4020 4082 25275780 25275843 1.220000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G067100 chr1D 48861784 48865868 4084 False 7544.00 7544 100.000 1 4085 1 chr1D.!!$F1 4084
1 TraesCS1D01G067100 chr1D 48873169 48873729 560 False 846.00 846 93.950 2889 3448 1 chr1D.!!$F2 559
2 TraesCS1D01G067100 chr1B 68740625 68744868 4243 False 2760.50 5051 91.679 1 4019 2 chr1B.!!$F1 4018
3 TraesCS1D01G067100 chr1A 48769098 48777474 8376 False 1469.25 3408 92.215 1 4023 4 chr1A.!!$F1 4022

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 2350 0.603707 ACACACATCTCCCAACGCTG 60.604 55.0 0.0 0.0 0.0 5.18 F
2156 3980 0.251297 CAAATGGGGCAGTCACAGGA 60.251 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 4076 0.036022 AGAGTGCTTTGCCTGAGACC 59.964 55.0 0.0 0.0 0.0 3.85 R
3785 8530 0.038166 TGGCAATGAGGTGAGAACCC 59.962 55.0 0.0 0.0 0.0 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.864069 TTGTTTTCGAAAATATGAGCAAAAGA 57.136 26.923 24.93 2.23 0.00 2.52
266 1397 8.562892 CAACAGCCCATAAGATAATTAAGACTG 58.437 37.037 0.00 0.00 0.00 3.51
267 1398 7.227156 ACAGCCCATAAGATAATTAAGACTGG 58.773 38.462 0.00 0.00 0.00 4.00
268 1399 7.072454 ACAGCCCATAAGATAATTAAGACTGGA 59.928 37.037 0.00 0.00 0.00 3.86
269 1400 7.389053 CAGCCCATAAGATAATTAAGACTGGAC 59.611 40.741 0.00 0.00 0.00 4.02
270 1401 6.655425 GCCCATAAGATAATTAAGACTGGACC 59.345 42.308 0.00 0.00 0.00 4.46
271 1402 7.474936 GCCCATAAGATAATTAAGACTGGACCT 60.475 40.741 0.00 0.00 0.00 3.85
272 1403 9.101325 CCCATAAGATAATTAAGACTGGACCTA 57.899 37.037 0.00 0.00 0.00 3.08
307 1438 1.209261 TCATTTGCGTGGAGATGCCTA 59.791 47.619 0.00 0.00 37.63 3.93
349 1480 6.106003 ACAAAACAAGTGTGAATCTTTTCCC 58.894 36.000 0.00 0.00 0.00 3.97
350 1481 6.070824 ACAAAACAAGTGTGAATCTTTTCCCT 60.071 34.615 0.00 0.00 0.00 4.20
351 1482 5.774498 AACAAGTGTGAATCTTTTCCCTC 57.226 39.130 0.00 0.00 0.00 4.30
352 1483 4.792068 ACAAGTGTGAATCTTTTCCCTCA 58.208 39.130 0.00 0.00 0.00 3.86
353 1484 5.200483 ACAAGTGTGAATCTTTTCCCTCAA 58.800 37.500 0.00 0.00 0.00 3.02
513 1890 1.552578 AGTGTGTGCCTACGTGGATA 58.447 50.000 0.00 0.00 38.35 2.59
524 1901 2.509052 ACGTGGATATGTGTCATCCG 57.491 50.000 0.00 0.00 44.27 4.18
538 1915 6.735130 TGTGTCATCCGATATACACTACTTG 58.265 40.000 19.41 0.00 42.12 3.16
539 1916 6.544564 TGTGTCATCCGATATACACTACTTGA 59.455 38.462 19.41 4.00 42.12 3.02
540 1917 7.230712 TGTGTCATCCGATATACACTACTTGAT 59.769 37.037 19.41 0.00 42.12 2.57
560 1938 6.056428 TGATGAAGCAAAATCTCATCATCG 57.944 37.500 9.34 0.00 43.71 3.84
567 1945 3.687572 AAATCTCATCATCGCACAAGC 57.312 42.857 0.00 0.00 37.42 4.01
600 1979 5.893687 TCCAAATGTATTGTTATGCAGCAG 58.106 37.500 0.00 0.00 29.62 4.24
615 1994 3.318839 TGCAGCAGCTAAAGTGATGTTTT 59.681 39.130 1.76 0.00 42.74 2.43
669 2055 4.528596 AGCACTAGACAGAAGTTGGTACAT 59.471 41.667 0.00 0.00 39.30 2.29
678 2064 9.383519 AGACAGAAGTTGGTACATATATGTTTG 57.616 33.333 22.90 10.19 41.97 2.93
725 2111 6.930667 AAGAAACACTTAACCAACGTGTAT 57.069 33.333 0.00 0.00 40.68 2.29
842 2228 3.906720 TGAGAGTTGGTTATAGCCACC 57.093 47.619 7.97 0.80 38.42 4.61
864 2250 4.685628 CCCAACTTTCCAATTGTCGAAATG 59.314 41.667 4.43 4.70 0.00 2.32
867 2253 7.312154 CCAACTTTCCAATTGTCGAAATGATA 58.688 34.615 4.43 0.00 0.00 2.15
868 2254 7.485913 CCAACTTTCCAATTGTCGAAATGATAG 59.514 37.037 4.43 0.45 0.00 2.08
963 2350 0.603707 ACACACATCTCCCAACGCTG 60.604 55.000 0.00 0.00 0.00 5.18
964 2351 1.003355 ACACATCTCCCAACGCTGG 60.003 57.895 0.00 0.00 43.10 4.85
971 2358 1.926511 CTCCCAACGCTGGCATCAAC 61.927 60.000 0.00 0.00 41.99 3.18
972 2359 2.568090 CCAACGCTGGCATCAACC 59.432 61.111 0.00 0.00 35.39 3.77
989 2376 3.325135 TCAACCAAACTTCTCTCTCCTCC 59.675 47.826 0.00 0.00 0.00 4.30
998 2385 3.534357 TCTCTCTCCTCCTCAAACAGT 57.466 47.619 0.00 0.00 0.00 3.55
1008 2395 2.040278 TCCTCAAACAGTTATGGCAGCT 59.960 45.455 0.00 0.00 0.00 4.24
1038 2425 3.673809 TCGCTTCGCTCTCTTTTTACTTC 59.326 43.478 0.00 0.00 0.00 3.01
1247 2634 4.735662 TTCGTTGTACTGGTGTATTTGC 57.264 40.909 0.00 0.00 0.00 3.68
1479 3297 2.322830 GGAAGTGGTTTCGCCGGAC 61.323 63.158 5.05 0.00 41.21 4.79
1511 3329 1.476471 GGATGCCCAGAGACATTCCAG 60.476 57.143 0.00 0.00 0.00 3.86
1536 3354 7.938490 AGAAACAGTTTCAAAAATATGGGCAAT 59.062 29.630 24.85 0.00 42.10 3.56
1574 3392 3.689161 GTCAAAGCCAAAGCCAAAAGTTT 59.311 39.130 0.00 0.00 41.25 2.66
1794 3612 8.044908 GGGGTCAATAAGTCTATTCAACTAACA 58.955 37.037 0.00 0.00 0.00 2.41
2151 3975 0.482446 AACCTCAAATGGGGCAGTCA 59.518 50.000 0.00 0.00 0.00 3.41
2156 3980 0.251297 CAAATGGGGCAGTCACAGGA 60.251 55.000 0.00 0.00 0.00 3.86
2164 3988 0.871057 GCAGTCACAGGAAGAGCAAC 59.129 55.000 0.00 0.00 0.00 4.17
2176 4000 0.613012 AGAGCAACCTCAAATGGGGC 60.613 55.000 0.00 0.00 40.68 5.80
2181 4005 0.482446 AACCTCAAATGGGGCAGTCA 59.518 50.000 0.00 0.00 0.00 3.41
2184 4008 1.171308 CTCAAATGGGGCAGTCACAG 58.829 55.000 0.00 0.00 0.00 3.66
2193 4017 1.079266 GCAGTCACAGGGAGAGCAG 60.079 63.158 0.00 0.00 0.00 4.24
2216 4040 1.000396 AAATGGGGCAGTCTCAGGC 60.000 57.895 0.00 0.00 0.00 4.85
2225 4049 0.590195 CAGTCTCAGGCAAAGCACAC 59.410 55.000 0.00 0.00 0.00 3.82
2251 4075 0.779997 AGAGCAACCTCAAATGGGGT 59.220 50.000 0.00 0.00 40.68 4.95
2252 4076 0.890683 GAGCAACCTCAAATGGGGTG 59.109 55.000 5.56 3.81 43.86 4.61
2265 4089 1.303643 GGGGTGGTCTCAGGCAAAG 60.304 63.158 0.00 0.00 0.00 2.77
2270 4094 0.250467 TGGTCTCAGGCAAAGCACTC 60.250 55.000 0.00 0.00 0.00 3.51
2274 4098 1.001746 TCTCAGGCAAAGCACTCTCAG 59.998 52.381 0.00 0.00 0.00 3.35
2409 4233 5.646215 ACTTATGGTGGTTGGAATGGTTTA 58.354 37.500 0.00 0.00 0.00 2.01
2509 4333 2.424956 GGTACGATAACCCGTCTCAACT 59.575 50.000 0.00 0.00 43.20 3.16
2630 4454 7.766219 ATATTCAAAGCTTCACAATGCAATC 57.234 32.000 0.00 0.00 0.00 2.67
2631 4455 4.859304 TCAAAGCTTCACAATGCAATCT 57.141 36.364 0.00 0.00 0.00 2.40
2667 4491 8.774586 ACCTTACATAATTTATGATCGCAGAAC 58.225 33.333 20.54 0.00 38.93 3.01
2777 4601 4.082841 CCATGGTCGAAATGTGTTCAATGA 60.083 41.667 2.57 0.00 0.00 2.57
2880 4704 7.688372 AGTACATTGAATTCAAGACTAATGCG 58.312 34.615 24.17 7.97 39.47 4.73
3010 4834 4.289672 TCAAATTTAGCAGGGAAGAGGAGT 59.710 41.667 0.00 0.00 0.00 3.85
3050 4874 7.764443 TCCTAAATTCAGTCAAAGTATCTTCCG 59.236 37.037 0.00 0.00 0.00 4.30
3078 4902 1.536149 CTAACGGCGAAGAAGAGTCG 58.464 55.000 16.62 0.00 41.46 4.18
3096 4920 1.743394 TCGTCTTAAGAGCGCATGAGA 59.257 47.619 11.47 4.09 0.00 3.27
3333 5162 7.895870 CACTATTCTATGTGGTAGTGTTTTCG 58.104 38.462 0.00 0.00 39.27 3.46
3344 5173 5.163426 TGGTAGTGTTTTCGGTTTCTCACTA 60.163 40.000 0.00 0.00 37.35 2.74
3468 5297 3.047877 GTGTGTGGTGGCTACGGC 61.048 66.667 0.00 0.00 37.82 5.68
3532 5361 5.061311 CACTTGTGTTGTCTTCTGCAAAAAG 59.939 40.000 2.73 2.73 0.00 2.27
3533 5362 4.782019 TGTGTTGTCTTCTGCAAAAAGT 57.218 36.364 8.03 0.00 0.00 2.66
3542 8277 6.265196 TGTCTTCTGCAAAAAGTCATATGGTT 59.735 34.615 2.13 0.00 0.00 3.67
3559 8294 4.927978 TGGTTGTTGGGTGAGTAATTTG 57.072 40.909 0.00 0.00 0.00 2.32
3561 8296 4.098654 TGGTTGTTGGGTGAGTAATTTGTG 59.901 41.667 0.00 0.00 0.00 3.33
3562 8297 4.500716 GGTTGTTGGGTGAGTAATTTGTGG 60.501 45.833 0.00 0.00 0.00 4.17
3568 8303 4.499037 GGTGAGTAATTTGTGGTTCACC 57.501 45.455 5.79 5.79 45.22 4.02
3584 8319 4.392138 GGTTCACCCTTAAGACGAATGAAG 59.608 45.833 3.36 0.00 0.00 3.02
3599 8334 7.655328 AGACGAATGAAGGATGATGTAGATTTC 59.345 37.037 0.00 0.00 0.00 2.17
3603 8338 9.995003 GAATGAAGGATGATGTAGATTTCTAGT 57.005 33.333 0.00 0.00 0.00 2.57
3647 8382 5.136828 TGCAATTGGGTTCAACTCTTTCTA 58.863 37.500 7.72 0.00 35.48 2.10
3651 8386 9.120538 GCAATTGGGTTCAACTCTTTCTATATA 57.879 33.333 7.72 0.00 35.48 0.86
3671 8406 5.669798 ATAAGGAAATTAGGTCTGGCCAT 57.330 39.130 5.51 0.00 40.61 4.40
3693 8429 7.816031 GCCATTATCCAACTTGATATTTGATGG 59.184 37.037 0.00 0.00 36.17 3.51
3704 8440 0.532115 ATTTGATGGCCGCCACTTTC 59.468 50.000 16.16 9.53 35.80 2.62
3771 8516 2.260434 GCCCTGTGCGTCGTTAGA 59.740 61.111 0.00 0.00 0.00 2.10
3772 8517 1.805945 GCCCTGTGCGTCGTTAGAG 60.806 63.158 0.00 0.00 0.00 2.43
3773 8518 1.805945 CCCTGTGCGTCGTTAGAGC 60.806 63.158 0.00 0.00 0.00 4.09
3775 8520 0.666274 CCTGTGCGTCGTTAGAGCAA 60.666 55.000 0.00 0.00 42.93 3.91
3776 8521 0.710567 CTGTGCGTCGTTAGAGCAAG 59.289 55.000 0.00 0.00 42.93 4.01
3777 8522 0.031585 TGTGCGTCGTTAGAGCAAGT 59.968 50.000 0.00 0.00 42.93 3.16
3778 8523 1.137513 GTGCGTCGTTAGAGCAAGTT 58.862 50.000 0.00 0.00 42.93 2.66
3779 8524 1.136611 GTGCGTCGTTAGAGCAAGTTG 60.137 52.381 0.00 0.00 42.93 3.16
3780 8525 0.179248 GCGTCGTTAGAGCAAGTTGC 60.179 55.000 20.44 20.44 45.46 4.17
3781 8526 0.438830 CGTCGTTAGAGCAAGTTGCC 59.561 55.000 24.02 15.18 46.52 4.52
3782 8527 0.438830 GTCGTTAGAGCAAGTTGCCG 59.561 55.000 24.02 18.83 46.52 5.69
3783 8528 1.132640 CGTTAGAGCAAGTTGCCGC 59.867 57.895 24.02 16.22 46.52 6.53
3784 8529 1.502190 GTTAGAGCAAGTTGCCGCC 59.498 57.895 24.02 13.46 46.52 6.13
3785 8530 2.032634 TTAGAGCAAGTTGCCGCCG 61.033 57.895 24.02 0.00 46.52 6.46
3786 8531 3.950794 TAGAGCAAGTTGCCGCCGG 62.951 63.158 24.02 0.00 46.52 6.13
3790 8535 4.038080 CAAGTTGCCGCCGGGTTC 62.038 66.667 4.77 0.00 34.97 3.62
3828 8573 5.074515 ACCTCCTTTGACCCATTTCTTCTTA 59.925 40.000 0.00 0.00 0.00 2.10
3845 8590 8.908786 TTCTTCTTATGTGAGTCTCATTTGTT 57.091 30.769 12.62 0.00 0.00 2.83
3847 8592 6.486253 TCTTATGTGAGTCTCATTTGTTGC 57.514 37.500 12.62 0.00 0.00 4.17
3848 8593 5.412594 TCTTATGTGAGTCTCATTTGTTGCC 59.587 40.000 12.62 0.00 0.00 4.52
3849 8594 2.929641 TGTGAGTCTCATTTGTTGCCA 58.070 42.857 5.68 0.00 0.00 4.92
3850 8595 2.618241 TGTGAGTCTCATTTGTTGCCAC 59.382 45.455 5.68 0.00 0.00 5.01
3851 8596 1.872952 TGAGTCTCATTTGTTGCCACG 59.127 47.619 0.00 0.00 0.00 4.94
3852 8597 1.873591 GAGTCTCATTTGTTGCCACGT 59.126 47.619 0.00 0.00 0.00 4.49
3853 8598 1.873591 AGTCTCATTTGTTGCCACGTC 59.126 47.619 0.00 0.00 0.00 4.34
3854 8599 1.873591 GTCTCATTTGTTGCCACGTCT 59.126 47.619 0.00 0.00 0.00 4.18
3855 8600 2.290641 GTCTCATTTGTTGCCACGTCTT 59.709 45.455 0.00 0.00 0.00 3.01
3863 8608 3.206964 TGTTGCCACGTCTTCAATAACA 58.793 40.909 0.00 0.00 0.00 2.41
3892 8637 6.774656 GGGAGACTCATATGAAACATCCATTT 59.225 38.462 19.61 0.00 0.00 2.32
3923 8668 1.669502 CCATCATTTGGCCACGTTGTG 60.670 52.381 3.88 1.82 39.09 3.33
3927 8672 1.107114 ATTTGGCCACGTTGTGAACA 58.893 45.000 3.88 0.00 35.23 3.18
4023 8769 2.632377 AGACCCTACATGTGCATTTCG 58.368 47.619 9.11 0.00 0.00 3.46
4024 8770 2.236146 AGACCCTACATGTGCATTTCGA 59.764 45.455 9.11 0.00 0.00 3.71
4025 8771 2.609459 GACCCTACATGTGCATTTCGAG 59.391 50.000 9.11 0.00 0.00 4.04
4026 8772 2.027192 ACCCTACATGTGCATTTCGAGT 60.027 45.455 9.11 0.00 0.00 4.18
4027 8773 2.609459 CCCTACATGTGCATTTCGAGTC 59.391 50.000 9.11 0.00 0.00 3.36
4028 8774 3.261580 CCTACATGTGCATTTCGAGTCA 58.738 45.455 9.11 0.00 0.00 3.41
4029 8775 3.684305 CCTACATGTGCATTTCGAGTCAA 59.316 43.478 9.11 0.00 0.00 3.18
4030 8776 4.333649 CCTACATGTGCATTTCGAGTCAAT 59.666 41.667 9.11 0.00 0.00 2.57
4031 8777 4.771590 ACATGTGCATTTCGAGTCAATT 57.228 36.364 0.00 0.00 0.00 2.32
4032 8778 4.478699 ACATGTGCATTTCGAGTCAATTG 58.521 39.130 0.00 0.00 0.00 2.32
4033 8779 2.932498 TGTGCATTTCGAGTCAATTGC 58.068 42.857 0.00 11.77 34.58 3.56
4034 8780 2.292845 TGTGCATTTCGAGTCAATTGCA 59.707 40.909 14.97 14.97 39.27 4.08
4035 8781 3.243334 TGTGCATTTCGAGTCAATTGCAA 60.243 39.130 18.07 0.00 41.74 4.08
4036 8782 3.362831 GTGCATTTCGAGTCAATTGCAAG 59.637 43.478 18.07 0.00 41.74 4.01
4037 8783 3.252944 TGCATTTCGAGTCAATTGCAAGA 59.747 39.130 4.94 0.00 38.86 3.02
4038 8784 4.229096 GCATTTCGAGTCAATTGCAAGAA 58.771 39.130 4.94 0.00 34.29 2.52
4039 8785 4.681025 GCATTTCGAGTCAATTGCAAGAAA 59.319 37.500 4.94 7.70 34.29 2.52
4040 8786 5.387752 GCATTTCGAGTCAATTGCAAGAAAC 60.388 40.000 4.94 2.49 34.29 2.78
4041 8787 5.499139 TTTCGAGTCAATTGCAAGAAACT 57.501 34.783 4.94 7.67 0.00 2.66
4042 8788 6.612247 TTTCGAGTCAATTGCAAGAAACTA 57.388 33.333 4.94 0.00 0.00 2.24
4043 8789 5.591643 TCGAGTCAATTGCAAGAAACTAC 57.408 39.130 4.94 0.00 0.00 2.73
4044 8790 4.451096 TCGAGTCAATTGCAAGAAACTACC 59.549 41.667 4.94 0.00 0.00 3.18
4045 8791 4.213270 CGAGTCAATTGCAAGAAACTACCA 59.787 41.667 4.94 0.00 0.00 3.25
4046 8792 5.106555 CGAGTCAATTGCAAGAAACTACCAT 60.107 40.000 4.94 0.00 0.00 3.55
4047 8793 6.092122 CGAGTCAATTGCAAGAAACTACCATA 59.908 38.462 4.94 0.00 0.00 2.74
4048 8794 7.201644 CGAGTCAATTGCAAGAAACTACCATAT 60.202 37.037 4.94 0.00 0.00 1.78
4049 8795 8.353423 AGTCAATTGCAAGAAACTACCATATT 57.647 30.769 4.94 0.00 0.00 1.28
4050 8796 8.806146 AGTCAATTGCAAGAAACTACCATATTT 58.194 29.630 4.94 0.00 0.00 1.40
4051 8797 8.863049 GTCAATTGCAAGAAACTACCATATTTG 58.137 33.333 4.94 0.00 0.00 2.32
4052 8798 7.545265 TCAATTGCAAGAAACTACCATATTTGC 59.455 33.333 4.94 0.00 39.72 3.68
4053 8799 4.980590 TGCAAGAAACTACCATATTTGCG 58.019 39.130 0.00 0.00 41.55 4.85
4054 8800 4.142491 TGCAAGAAACTACCATATTTGCGG 60.142 41.667 0.00 0.00 41.55 5.69
4055 8801 4.351192 CAAGAAACTACCATATTTGCGGC 58.649 43.478 0.00 0.00 0.00 6.53
4056 8802 3.886123 AGAAACTACCATATTTGCGGCT 58.114 40.909 0.00 0.00 0.00 5.52
4057 8803 5.031066 AGAAACTACCATATTTGCGGCTA 57.969 39.130 0.00 0.00 0.00 3.93
4058 8804 5.057149 AGAAACTACCATATTTGCGGCTAG 58.943 41.667 0.00 0.00 0.00 3.42
4059 8805 3.402628 ACTACCATATTTGCGGCTAGG 57.597 47.619 0.00 0.00 0.00 3.02
4060 8806 2.704065 ACTACCATATTTGCGGCTAGGT 59.296 45.455 0.00 0.00 0.00 3.08
4061 8807 2.729028 ACCATATTTGCGGCTAGGTT 57.271 45.000 0.00 0.00 0.00 3.50
4062 8808 3.012934 ACCATATTTGCGGCTAGGTTT 57.987 42.857 0.00 0.00 0.00 3.27
4063 8809 2.687935 ACCATATTTGCGGCTAGGTTTG 59.312 45.455 0.00 0.00 0.00 2.93
4064 8810 2.543653 CCATATTTGCGGCTAGGTTTGC 60.544 50.000 0.00 0.00 0.00 3.68
4065 8811 0.730265 TATTTGCGGCTAGGTTTGCG 59.270 50.000 0.00 0.00 0.00 4.85
4066 8812 0.958382 ATTTGCGGCTAGGTTTGCGA 60.958 50.000 0.00 0.00 0.00 5.10
4067 8813 1.167155 TTTGCGGCTAGGTTTGCGAA 61.167 50.000 0.00 0.00 0.00 4.70
4068 8814 1.167155 TTGCGGCTAGGTTTGCGAAA 61.167 50.000 0.00 0.00 0.00 3.46
4069 8815 1.167155 TGCGGCTAGGTTTGCGAAAA 61.167 50.000 0.00 0.00 0.00 2.29
4070 8816 0.039888 GCGGCTAGGTTTGCGAAAAA 60.040 50.000 0.00 0.00 0.00 1.94
4071 8817 1.681825 CGGCTAGGTTTGCGAAAAAC 58.318 50.000 0.00 0.00 0.00 2.43
4076 8822 3.742983 GGTTTGCGAAAAACCACCA 57.257 47.368 21.71 0.00 46.74 4.17
4077 8823 2.011540 GGTTTGCGAAAAACCACCAA 57.988 45.000 21.71 0.00 46.74 3.67
4078 8824 1.930503 GGTTTGCGAAAAACCACCAAG 59.069 47.619 21.71 0.00 46.74 3.61
4079 8825 2.612604 GTTTGCGAAAAACCACCAAGT 58.387 42.857 0.00 0.00 0.00 3.16
4080 8826 2.570442 TTGCGAAAAACCACCAAGTC 57.430 45.000 0.00 0.00 0.00 3.01
4081 8827 0.378962 TGCGAAAAACCACCAAGTCG 59.621 50.000 0.00 0.00 0.00 4.18
4082 8828 0.933047 GCGAAAAACCACCAAGTCGC 60.933 55.000 0.00 0.00 45.72 5.19
4083 8829 0.661020 CGAAAAACCACCAAGTCGCT 59.339 50.000 0.00 0.00 0.00 4.93
4084 8830 1.868498 CGAAAAACCACCAAGTCGCTA 59.132 47.619 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 146 0.457035 TATACCTCGCCCGACAACAC 59.543 55.000 0.00 0.00 0.00 3.32
146 149 1.027357 GTCTATACCTCGCCCGACAA 58.973 55.000 0.00 0.00 0.00 3.18
266 1397 4.768968 TGAGGCCGTATTAGTAATAGGTCC 59.231 45.833 17.20 15.00 0.00 4.46
267 1398 5.972107 TGAGGCCGTATTAGTAATAGGTC 57.028 43.478 17.20 14.41 0.00 3.85
268 1399 6.930068 AATGAGGCCGTATTAGTAATAGGT 57.070 37.500 17.20 3.79 0.00 3.08
269 1400 6.092259 GCAAATGAGGCCGTATTAGTAATAGG 59.908 42.308 13.40 13.40 0.00 2.57
270 1401 6.183360 CGCAAATGAGGCCGTATTAGTAATAG 60.183 42.308 2.71 0.00 0.00 1.73
271 1402 5.636121 CGCAAATGAGGCCGTATTAGTAATA 59.364 40.000 7.77 0.00 0.00 0.98
272 1403 4.451096 CGCAAATGAGGCCGTATTAGTAAT 59.549 41.667 7.77 0.17 0.00 1.89
273 1404 3.805422 CGCAAATGAGGCCGTATTAGTAA 59.195 43.478 7.77 0.00 0.00 2.24
274 1405 3.181473 ACGCAAATGAGGCCGTATTAGTA 60.181 43.478 7.77 0.00 0.00 1.82
275 1406 2.210116 CGCAAATGAGGCCGTATTAGT 58.790 47.619 7.77 0.00 0.00 2.24
276 1407 2.032894 CACGCAAATGAGGCCGTATTAG 60.033 50.000 7.77 5.97 0.00 1.73
277 1408 1.937223 CACGCAAATGAGGCCGTATTA 59.063 47.619 7.77 0.00 0.00 0.98
278 1409 0.732571 CACGCAAATGAGGCCGTATT 59.267 50.000 0.00 0.00 0.00 1.89
279 1410 1.095228 CCACGCAAATGAGGCCGTAT 61.095 55.000 0.00 0.00 0.00 3.06
280 1411 1.743623 CCACGCAAATGAGGCCGTA 60.744 57.895 0.00 0.00 0.00 4.02
307 1438 6.544564 TGTTTTGTTCCCGTTTAAGAGAGAAT 59.455 34.615 0.00 0.00 0.00 2.40
371 1747 3.825143 AAAGCACTTGTTGGAGCAAAT 57.175 38.095 0.00 0.00 0.00 2.32
482 1859 5.902613 AGGCACACACTTAATACGTACTA 57.097 39.130 0.00 0.00 0.00 1.82
483 1860 4.796038 AGGCACACACTTAATACGTACT 57.204 40.909 0.00 0.00 0.00 2.73
484 1861 4.496895 CGTAGGCACACACTTAATACGTAC 59.503 45.833 0.00 0.00 32.21 3.67
513 1890 7.230712 TCAAGTAGTGTATATCGGATGACACAT 59.769 37.037 26.41 18.38 43.72 3.21
538 1915 4.910456 GCGATGATGAGATTTTGCTTCATC 59.090 41.667 0.00 0.00 39.95 2.92
539 1916 4.337274 TGCGATGATGAGATTTTGCTTCAT 59.663 37.500 0.00 0.00 33.30 2.57
540 1917 3.690628 TGCGATGATGAGATTTTGCTTCA 59.309 39.130 0.00 0.00 0.00 3.02
560 1938 1.068610 TGGATACTTTTGCGCTTGTGC 60.069 47.619 9.73 0.00 37.61 4.57
567 1945 7.810766 AACAATACATTTGGATACTTTTGCG 57.189 32.000 0.00 0.00 37.61 4.85
621 2000 7.640852 TCGCTTTTATGCTTGTTTGTTTACTA 58.359 30.769 0.00 0.00 0.00 1.82
678 2064 9.207042 CTTTTTCACGTAACTTACAAACTTCTC 57.793 33.333 0.00 0.00 0.00 2.87
750 2136 6.460781 TGTGTTGTCTTTAACGACCATCTAT 58.539 36.000 9.39 0.00 41.04 1.98
757 2143 5.292589 TCCTTTCTGTGTTGTCTTTAACGAC 59.707 40.000 5.19 5.19 41.96 4.34
835 2221 2.896685 CAATTGGAAAGTTGGGTGGCTA 59.103 45.455 0.00 0.00 0.00 3.93
842 2228 5.527951 TCATTTCGACAATTGGAAAGTTGG 58.472 37.500 10.83 3.43 35.79 3.77
963 2350 3.416156 AGAGAGAAGTTTGGTTGATGCC 58.584 45.455 0.00 0.00 0.00 4.40
964 2351 3.438434 GGAGAGAGAAGTTTGGTTGATGC 59.562 47.826 0.00 0.00 0.00 3.91
971 2358 3.169099 TGAGGAGGAGAGAGAAGTTTGG 58.831 50.000 0.00 0.00 0.00 3.28
972 2359 4.881019 TTGAGGAGGAGAGAGAAGTTTG 57.119 45.455 0.00 0.00 0.00 2.93
989 2376 4.256920 AGTAGCTGCCATAACTGTTTGAG 58.743 43.478 0.00 0.00 0.00 3.02
998 2385 3.132289 AGCGAAACTAGTAGCTGCCATAA 59.868 43.478 16.45 0.00 38.67 1.90
1038 2425 1.269883 TGGCACAAGAGCAAAATGCAG 60.270 47.619 5.01 0.00 40.75 4.41
1247 2634 1.850441 GTTCGATTACACGACGGATGG 59.150 52.381 0.00 0.00 41.97 3.51
1479 3297 1.272092 TGGGCATCCAGGAAAAGACAG 60.272 52.381 0.00 0.00 38.32 3.51
1511 3329 7.489574 TTGCCCATATTTTTGAAACTGTTTC 57.510 32.000 22.94 22.94 40.08 2.78
1536 3354 1.634960 TGACCCTGTACGGATTGTGA 58.365 50.000 2.31 0.00 33.16 3.58
1574 3392 6.460953 GGTGAACTTTTTGGTGCTCATCTTTA 60.461 38.462 0.00 0.00 0.00 1.85
1626 3444 0.325272 TGTACAATGCCTGCCGGTAA 59.675 50.000 1.90 0.00 0.00 2.85
1757 3575 8.331931 AGACTTATTGACCCCACATAGATTTA 57.668 34.615 0.00 0.00 0.00 1.40
1806 3624 7.469260 ACAACATGTCACTTTGTAAACTACAC 58.531 34.615 0.00 0.00 38.63 2.90
2151 3975 3.152341 CATTTGAGGTTGCTCTTCCTGT 58.848 45.455 0.00 0.00 33.83 4.00
2156 3980 1.928868 CCCCATTTGAGGTTGCTCTT 58.071 50.000 0.00 0.00 0.00 2.85
2164 3988 0.251297 TGTGACTGCCCCATTTGAGG 60.251 55.000 0.00 0.00 0.00 3.86
2176 4000 1.079266 GCTGCTCTCCCTGTGACTG 60.079 63.158 0.00 0.00 0.00 3.51
2181 4005 1.130054 TTTGAGGCTGCTCTCCCTGT 61.130 55.000 13.24 0.00 33.04 4.00
2184 4008 0.750911 CCATTTGAGGCTGCTCTCCC 60.751 60.000 13.24 0.00 33.04 4.30
2216 4040 1.805869 CTCTCCCTGAGTGTGCTTTG 58.194 55.000 0.00 0.00 37.99 2.77
2225 4049 0.979665 TTGAGGTTGCTCTCCCTGAG 59.020 55.000 0.00 0.00 45.33 3.35
2251 4075 0.250467 GAGTGCTTTGCCTGAGACCA 60.250 55.000 0.00 0.00 0.00 4.02
2252 4076 0.036022 AGAGTGCTTTGCCTGAGACC 59.964 55.000 0.00 0.00 0.00 3.85
2265 4089 1.896694 CTGGTCTCCCTGAGAGTGC 59.103 63.158 0.00 0.00 43.71 4.40
2274 4098 0.251634 CTTCTTCAGGCTGGTCTCCC 59.748 60.000 15.73 0.00 0.00 4.30
2283 4107 2.044551 CCCTGCCCTTCTTCAGGC 60.045 66.667 2.89 0.00 46.48 4.85
2409 4233 6.597280 GCTTATGATCACAAAAGTTCTCCTCT 59.403 38.462 0.00 0.00 0.00 3.69
2493 4317 1.829222 TGGGAGTTGAGACGGGTTATC 59.171 52.381 0.00 0.00 0.00 1.75
2509 4333 1.137594 AGGATGGGGAACGTTTGGGA 61.138 55.000 0.46 0.00 0.00 4.37
2667 4491 5.703978 TCCATAATGGTGAAATAATGGCG 57.296 39.130 0.00 0.00 39.03 5.69
2700 4524 5.857268 TGGATCATGTACATCACACTATGG 58.143 41.667 5.07 0.00 40.86 2.74
2777 4601 3.408853 GCCCCGGGCTAAGAAGGT 61.409 66.667 22.31 0.00 46.69 3.50
2880 4704 3.865745 CGATGTGACTAACCATGGAGTTC 59.134 47.826 21.47 9.45 0.00 3.01
3050 4874 3.578688 TCTTCGCCGTTAGGAAAACTAC 58.421 45.455 0.00 0.00 41.02 2.73
3078 4902 5.694006 ACATTATCTCATGCGCTCTTAAGAC 59.306 40.000 9.73 0.00 0.00 3.01
3096 4920 7.341805 AGTCCATGAGCTAGTTTTGACATTAT 58.658 34.615 0.00 0.00 0.00 1.28
3174 4998 8.831550 GGACCTTTGTTGATATCTTATTGAGAC 58.168 37.037 3.98 0.00 37.17 3.36
3331 5160 8.780846 TTTTTATTGCTATAGTGAGAAACCGA 57.219 30.769 0.84 0.00 0.00 4.69
3344 5173 9.135189 TGCTATGGTGAGAATTTTTATTGCTAT 57.865 29.630 0.00 0.00 0.00 2.97
3448 5277 2.317609 CGTAGCCACCACACACTGC 61.318 63.158 0.00 0.00 0.00 4.40
3468 5297 6.293298 GCACATAGAAGAATGTATTGAGCTGG 60.293 42.308 0.00 0.00 38.01 4.85
3532 5361 3.686016 ACTCACCCAACAACCATATGAC 58.314 45.455 3.65 0.00 0.00 3.06
3533 5362 5.506730 TTACTCACCCAACAACCATATGA 57.493 39.130 3.65 0.00 0.00 2.15
3542 8277 3.904717 ACCACAAATTACTCACCCAACA 58.095 40.909 0.00 0.00 0.00 3.33
3559 8294 2.825861 TCGTCTTAAGGGTGAACCAC 57.174 50.000 1.85 0.00 43.89 4.16
3561 8296 3.934068 TCATTCGTCTTAAGGGTGAACC 58.066 45.455 1.85 0.00 40.67 3.62
3562 8297 4.392138 CCTTCATTCGTCTTAAGGGTGAAC 59.608 45.833 1.85 0.00 35.80 3.18
3568 8303 6.051717 ACATCATCCTTCATTCGTCTTAAGG 58.948 40.000 1.85 0.00 39.93 2.69
3584 8319 5.698545 GGCACACTAGAAATCTACATCATCC 59.301 44.000 0.00 0.00 0.00 3.51
3599 8334 3.330267 GAAGAACTCAAGGGCACACTAG 58.670 50.000 0.00 0.00 0.00 2.57
3603 8338 1.140312 AGGAAGAACTCAAGGGCACA 58.860 50.000 0.00 0.00 0.00 4.57
3647 8382 6.780198 TGGCCAGACCTAATTTCCTTATAT 57.220 37.500 0.00 0.00 40.22 0.86
3651 8386 4.337264 AATGGCCAGACCTAATTTCCTT 57.663 40.909 13.05 0.00 40.22 3.36
3652 8387 5.458215 GGATAATGGCCAGACCTAATTTCCT 60.458 44.000 13.05 0.00 40.22 3.36
3671 8406 6.016360 CGGCCATCAAATATCAAGTTGGATAA 60.016 38.462 2.24 0.00 33.73 1.75
3693 8429 2.217429 TTCAAAAAGAAAGTGGCGGC 57.783 45.000 0.00 0.00 32.05 6.53
3766 8511 1.502190 GGCGGCAACTTGCTCTAAC 59.498 57.895 13.43 0.00 44.28 2.34
3767 8512 2.032634 CGGCGGCAACTTGCTCTAA 61.033 57.895 13.43 0.00 44.28 2.10
3768 8513 2.434185 CGGCGGCAACTTGCTCTA 60.434 61.111 13.43 0.00 44.28 2.43
3773 8518 4.038080 GAACCCGGCGGCAACTTG 62.038 66.667 23.20 8.42 0.00 3.16
3775 8520 4.699522 GAGAACCCGGCGGCAACT 62.700 66.667 23.20 17.98 0.00 3.16
3780 8525 4.452733 GAGGTGAGAACCCGGCGG 62.453 72.222 21.46 21.46 0.00 6.13
3781 8526 2.521958 AATGAGGTGAGAACCCGGCG 62.522 60.000 0.00 0.00 0.00 6.46
3782 8527 1.026718 CAATGAGGTGAGAACCCGGC 61.027 60.000 0.00 0.00 0.00 6.13
3783 8528 1.026718 GCAATGAGGTGAGAACCCGG 61.027 60.000 0.00 0.00 0.00 5.73
3784 8529 1.026718 GGCAATGAGGTGAGAACCCG 61.027 60.000 0.00 0.00 0.00 5.28
3785 8530 0.038166 TGGCAATGAGGTGAGAACCC 59.962 55.000 0.00 0.00 0.00 4.11
3786 8531 1.168714 GTGGCAATGAGGTGAGAACC 58.831 55.000 0.00 0.00 0.00 3.62
3790 8535 0.393537 GGAGGTGGCAATGAGGTGAG 60.394 60.000 0.00 0.00 0.00 3.51
3845 8590 3.325870 CTCTGTTATTGAAGACGTGGCA 58.674 45.455 0.00 0.00 0.00 4.92
3847 8592 3.262420 CCCTCTGTTATTGAAGACGTGG 58.738 50.000 0.00 0.00 0.00 4.94
3848 8593 3.056107 TCCCCTCTGTTATTGAAGACGTG 60.056 47.826 0.00 0.00 0.00 4.49
3849 8594 3.170717 TCCCCTCTGTTATTGAAGACGT 58.829 45.455 0.00 0.00 0.00 4.34
3850 8595 3.447586 TCTCCCCTCTGTTATTGAAGACG 59.552 47.826 0.00 0.00 0.00 4.18
3851 8596 4.468153 AGTCTCCCCTCTGTTATTGAAGAC 59.532 45.833 0.00 0.00 0.00 3.01
3852 8597 4.689062 AGTCTCCCCTCTGTTATTGAAGA 58.311 43.478 0.00 0.00 0.00 2.87
3853 8598 4.467795 TGAGTCTCCCCTCTGTTATTGAAG 59.532 45.833 0.00 0.00 32.50 3.02
3854 8599 4.425772 TGAGTCTCCCCTCTGTTATTGAA 58.574 43.478 0.00 0.00 32.50 2.69
3855 8600 4.061131 TGAGTCTCCCCTCTGTTATTGA 57.939 45.455 0.00 0.00 32.50 2.57
3863 8608 4.624913 TGTTTCATATGAGTCTCCCCTCT 58.375 43.478 5.39 0.00 32.50 3.69
3923 8668 4.943705 TGTTGGCTCTCCTATTCATTGTTC 59.056 41.667 0.00 0.00 0.00 3.18
3927 8672 5.374921 CTGATGTTGGCTCTCCTATTCATT 58.625 41.667 0.00 0.00 0.00 2.57
3989 8734 5.224441 TGTAGGGTCTAGAATGGCCTAATT 58.776 41.667 3.32 0.00 0.00 1.40
4023 8769 5.689383 TGGTAGTTTCTTGCAATTGACTC 57.311 39.130 10.34 0.00 0.00 3.36
4024 8770 7.944729 ATATGGTAGTTTCTTGCAATTGACT 57.055 32.000 10.34 6.77 0.00 3.41
4025 8771 8.863049 CAAATATGGTAGTTTCTTGCAATTGAC 58.137 33.333 10.34 1.02 0.00 3.18
4026 8772 7.545265 GCAAATATGGTAGTTTCTTGCAATTGA 59.455 33.333 10.34 0.00 38.03 2.57
4027 8773 7.463119 CGCAAATATGGTAGTTTCTTGCAATTG 60.463 37.037 0.00 0.00 38.02 2.32
4028 8774 6.531240 CGCAAATATGGTAGTTTCTTGCAATT 59.469 34.615 0.00 0.00 38.02 2.32
4029 8775 6.035843 CGCAAATATGGTAGTTTCTTGCAAT 58.964 36.000 0.00 0.00 38.02 3.56
4030 8776 5.398169 CGCAAATATGGTAGTTTCTTGCAA 58.602 37.500 0.00 0.00 38.02 4.08
4031 8777 4.142491 CCGCAAATATGGTAGTTTCTTGCA 60.142 41.667 0.00 0.00 38.02 4.08
4032 8778 4.351192 CCGCAAATATGGTAGTTTCTTGC 58.649 43.478 0.00 0.00 35.49 4.01
4033 8779 4.096382 AGCCGCAAATATGGTAGTTTCTTG 59.904 41.667 0.00 0.00 0.00 3.02
4034 8780 4.270008 AGCCGCAAATATGGTAGTTTCTT 58.730 39.130 0.00 0.00 0.00 2.52
4035 8781 3.886123 AGCCGCAAATATGGTAGTTTCT 58.114 40.909 0.00 0.00 0.00 2.52
4036 8782 4.213482 CCTAGCCGCAAATATGGTAGTTTC 59.787 45.833 0.00 0.00 0.00 2.78
4037 8783 4.134563 CCTAGCCGCAAATATGGTAGTTT 58.865 43.478 0.00 0.00 0.00 2.66
4038 8784 3.135895 ACCTAGCCGCAAATATGGTAGTT 59.864 43.478 0.00 0.00 0.00 2.24
4039 8785 2.704065 ACCTAGCCGCAAATATGGTAGT 59.296 45.455 0.00 0.00 0.00 2.73
4040 8786 3.402628 ACCTAGCCGCAAATATGGTAG 57.597 47.619 0.00 0.00 0.00 3.18
4041 8787 3.849563 AACCTAGCCGCAAATATGGTA 57.150 42.857 0.00 0.00 0.00 3.25
4042 8788 2.687935 CAAACCTAGCCGCAAATATGGT 59.312 45.455 0.00 0.00 0.00 3.55
4043 8789 2.543653 GCAAACCTAGCCGCAAATATGG 60.544 50.000 0.00 0.00 0.00 2.74
4044 8790 2.731217 GCAAACCTAGCCGCAAATATG 58.269 47.619 0.00 0.00 0.00 1.78
4045 8791 1.333619 CGCAAACCTAGCCGCAAATAT 59.666 47.619 0.00 0.00 0.00 1.28
4046 8792 0.730265 CGCAAACCTAGCCGCAAATA 59.270 50.000 0.00 0.00 0.00 1.40
4047 8793 0.958382 TCGCAAACCTAGCCGCAAAT 60.958 50.000 0.00 0.00 0.00 2.32
4048 8794 1.167155 TTCGCAAACCTAGCCGCAAA 61.167 50.000 0.00 0.00 0.00 3.68
4049 8795 1.167155 TTTCGCAAACCTAGCCGCAA 61.167 50.000 0.00 0.00 0.00 4.85
4050 8796 1.167155 TTTTCGCAAACCTAGCCGCA 61.167 50.000 0.00 0.00 0.00 5.69
4051 8797 0.039888 TTTTTCGCAAACCTAGCCGC 60.040 50.000 0.00 0.00 0.00 6.53
4052 8798 1.664874 GGTTTTTCGCAAACCTAGCCG 60.665 52.381 17.44 0.00 44.71 5.52
4053 8799 2.060326 GGTTTTTCGCAAACCTAGCC 57.940 50.000 17.44 0.00 44.71 3.93
4059 8805 2.601314 GACTTGGTGGTTTTTCGCAAAC 59.399 45.455 2.34 2.34 0.00 2.93
4060 8806 2.732597 CGACTTGGTGGTTTTTCGCAAA 60.733 45.455 0.00 0.00 0.00 3.68
4061 8807 1.202200 CGACTTGGTGGTTTTTCGCAA 60.202 47.619 0.00 0.00 0.00 4.85
4062 8808 0.378962 CGACTTGGTGGTTTTTCGCA 59.621 50.000 0.00 0.00 0.00 5.10
4063 8809 0.933047 GCGACTTGGTGGTTTTTCGC 60.933 55.000 0.00 0.00 44.22 4.70
4064 8810 0.661020 AGCGACTTGGTGGTTTTTCG 59.339 50.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.