>input_sequence_38139
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------------------------------------------------------------------ATGGCAGCTACTAG
TTTCGCTTCGCTCTCTTTTTACTTCTGCATTTTGCTCTTGTGCCATAGCTCCATGGCACAACTGTTTGGCATGAGCTTTA
ACCCATGGCAAAGCTCTCGCCAAGGGGGTTTCAGAGAGTGTACATTCAATAGGCTACAAGCATCTACACCACTTCGTCAA
GTGAGGTCACAAGCAGGCCTGACCGAGTATTTTGATGAGGAAAATGAGCAATTTCGTTGTACTGGTGTATTTGCCATCCG
TCGTGTAATCGAACCTCGTGGTTATTTGTTACCGCGATACCACAACACTCATGGATTAGTCTACATCATCCAAGGTTTGT
GTAGTAATTTAATTAATATAGTTA--------------------------------------------------------
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-------------------------------------------------------CCATTTCATATTACTAATAGTTTCT
TGAGATAAAGGTTACTATTTTTAGTATTTTATTTATCAATAAGTTTCTAATACTAACATGCACATATGTTGTCACCCAGG
AAGTGGTTTCGCCGGACTGTCTTTTCCTGGATGCCCAGAGACATTCCAGAAACAGTTTCAAAAATATGGGCAATCACAAT
CCGTACAGGGTCAAAGCCAAAGCCAAAAGTTTAAAGATGAGCACCAAAAAGTTCACCGTTTCAGACAAGGAGATGTCATT
GCATTACCGGCAGGCATTGTACATTGGTTCTACAATGACGGTGATGCGCCAATTGTGGCTATCTATGTTTTCGACGTAAA
CAACTATGCTAATCAACTTGAGCCTAGGCATAAGGTAACAAATGATCTTTGAGATAAATCTATGTGGGGTCAATAAGTCT
ATTCAACTAACATGTTGTATTTAGTGTAGTTTACAAAGTGACATGTTGTTTAATTTCTCTTCTTGATCAATCTTGTAGGA
ATTTTTGTTCGCTGGCAACTATAGGAGTTCGCAACTTCACTCTAGTCAAAACATATTCAGTGGTTTCGATGTTCGATTGC
TTGCTGAGGCCTTGGGTACAAGTGGAAAAATAGCGCAAAGGCTTCAAAGTCAAAATGA------TGACATAATTCATGTG
AATCATACCCTTAAATTTCTGAAGCCTGTTTTTACACAACAGCGAGAGCCAGAATCCTACCCACACACTCAATATGAGGA
AGGGCAATCTCAGGCAAAACACTCTCAGGAAGAGCAACCTCAAATGGGGCAGTCACAGGAAGAGCAACCTCAAATGGGGC
AGTCACAGGGAGAGCAGCCTCAAATGGGGCAGTCTCAGGCAAAGCACACTCAGGGAGAGCAACCTCAAATGGGGTGGTCT
CAGGCAAAGCACTCTCAGGGAGACCAGCCTGAAGAAGGGCAGGGAGGGCAATCTCAAGAAGAACAATCTCAGGCAGGGCC
ATATCCGGGATGTCAACCTCATGCAGGGCAATCTCATGCATCACAATCAACTTATGGTGGTTGGAATGGTTTAGAGGAGA
ACTTTTGTGATCATAAGCTAAGTGTGAACATCGACGATCCCAGTCGTGCTGACATATACAACCCGCGTGCCGGTACGATA
ACCCGTCTCAACTCCCAAACGTTCCCCATCCTTAACATCGTGCAAATGAGTGCTACAAGAGTACATCTCTACCAGGTAAT
TATGATATTGTGTTTTTTCATACTCTTTTATATTCAAAGCTTCACAATGCAATCTTAACGTTATACCTTACATAATTTAT
GATCGCAGAACGCCATTATTTCACCATTATGGAACATTAATGCCCATAGTGTGATGTACATGATCCAAGGACATATCTGG
GTTCAGGTTGTCAATGACCATGGTCGAAATGTGTTCAATGACCTTCTTAGCCCGGGGCAACTATTAATCATACCACAGAA
CTATGTTGTTCTGAAGAAGGCACAACGTGATGGAAGCAAGTACATTGAATTCAAGACTAATGCGAACTCCATGGTTAGTC
ACATCGCAGGAAAGAACTCAATTCTCGGCGCCTTGCCCGTTGATGTCATCGCCAATGCATACGGCATCTCTAGGACAGAA
GCTCGAAGCCTCAAATTTAGCAGGGAAGAGGAGTTGGGAGTATTCGCTCCTAAATTCAGTCAAAGTATCTTCCGTAGTTT
TCCTAACGGCGAAGAAGAGTCGTCTTAA----------------------------------------------------
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>chr1D_1_TraesCS1D01G067100
TTTTTGAATGTATGGTATTGTTTTCGAAAATATGAGCAAAAGAAAATAAAGTCGAATGAATAAACAAATAAAACTGAAGT
AACCTGCAGTAGGCTACTTGGGCCGGGCGAACCAGACGCTC--TGTAGGCGAGGGGGGCTTCTATGTGTTGTCGGGCGAG
GTATAGACGCGCGCCCCTTTTCGTCTCGGGTTCAATTTTTCAAGCCAGCCAA--TGTTTGGTCATCTGTT----------
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-------------------------------------------------------------TAGAAATGTTGGGTCAACA
GCCCATAAGATAATTAAGAC---------------TGGACCTATTACTAATACGGCCTCATTTGCGTGGAGATGCCTATT
CTCTCTTAAACGGGAACAAAACAAGTGTGAATCTTTTCCCTCAA------------------------------------
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-------------------------------------------------AAAAAAAGGTGTGATTAATTTGCTCCAACAA
GTGCTTTTTCTTCTTATCTGAACTTTTAATATCTGCACTCCTTGTATCCAGATGGATAATGCATCCTCGTGGAAAACTTC
TTTT-TTCCTTATCCTGATAGTACGTATTAAGTGTGTGCCTACGTGGATATGTGTCATCCGATATACACTACTTGAT-GA
AGCAAAATCTCATCATCGCACAAGCGCAAAAGTATCCAAATGTATT-GTTATGCAGCAGCTAAAGTGATGTTTTCAGTTT
-------AGTAAACAAACAAGCATAAAAGCGAGCACTAGACAGAAGTTGGTACATATATGTTTGAGAAGTTTGTAAGTTA
CGTGAAAAAGAAACACTTAACCAACGTGTATGAAAACCTTTCTAGAAATAATGATATAGATGGTCGTTAAAGACAACACA
GAAAGGATTTTCTATGTTTGCGTGCAGTCATATATAACTTTAACTCATGAGAGTTGGTTATAGCCACCCAACTTTCCAAT
TGTCGAAATGATAGTATGTTCTATACATTTATCTTAACAAATCTTGTCTCTACATAAGTTCTAGGTAGATTTTGTT-GGC
TATAAAAGCCACACACATCTCCCAACGCTGGCATCAACCAAACTTCTCTCTCCTCCTCAAACAGTTATGGCAGCTACTAG
TTTCGCTTCGCTCTCTTTTTACTTCTGCATTTTGCTCTTGTGCCATAGCTCCATGGCACAACTGTTTGGCATGAGCTTTA
ACCCATGGCAAAGCTCTCGCCAAGGGGGTTTCAGAGAGTGTACATTCAATAGGCTACAAGCATCTACACCACTTCGTCAA
GTGAGGTCACAAGCAGGCCTGACCGAGTATTTTGATGAGGAAAATGAGCAATTTCGTTGTACTGGTGTATTTGCCATCCG
TCGTGTAATCGAACCTCGTGGTTATTTGTTACCGCGATACCACAACACTCATGGATTAGTCTACATCATCCAAGGTTTGT
GTAGTAATTTAATTAATATAGTTA--------------------------------------------------------
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-------------------------------------------------------CCATTTCATATTACTAATAGTTTCT
TGAGATAAAGGTTACTATTTTTAGTATTTTATTTATCAATAAGTTTCTAATACTAACATGCACATATGTTGTCACCCAGG
AAGTGGTTTCGCCGGACTGTCTTTTCCTGGATGCCCAGAGACATTCCAGAAACAGTTTCAAAAATATGGGCAATCACAAT
CCGTACAGGGTCAAAGCCAAAGCCAAAAGTTTAAAGATGAGCACCAAAAAGTTCACCGTTTCAGACAAGGAGATGTCATT
GCATTACCGGCAGGCATTGTACATTGGTTCTACAATGACGGTGATGCGCCAATTGTGGCTATCTATGTTTTCGACGTAAA
CAACTATGCTAATCAACTTGAGCCTAGGCATAAGGTAACAAATGATCTTTGAGATAAATCTATGTGGGGTCAATAAGTCT
ATTCAACTAACATGTTGTATTTAGTGTAGTTTACAAAGTGACATGTTGTTTAATTTCTCTTCTTGATCAATCTTGTAGGA
ATTTTTGTTCGCTGGCAACTATAGGAGTTCGCAACTTCACTCTAGTCAAAACATATTCAGTGGTTTCGATGTTCGATTGC
TTGCTGAGGCCTTGGGTACAAGTGGAAAAATAGCGCAAAGGCTTCAAAGTCAAAATGA------TGACATAATTCATGTG
AATCATACCCTTAAATTTCTGAAGCCTGTTTTTACACAACAGCGAGAGCCAGAATCCTACCCACACACTCAATATGAGGA
AGGGCAATCTCAGGCAAAACACTCTCAGGAAGAGCAACCTCAAATGGGGCAGTCACAGGAAGAGCAACCTCAAATGGGGC
AGTCACAGGGAGAGCAGCCTCAAATGGGGCAGTCTCAGGCAAAGCACACTCAGGGAGAGCAACCTCAAATGGGGTGGTCT
CAGGCAAAGCACTCTCAGGGAGACCAGCCTGAAGAAGGGCAGGGAGGGCAATCTCAAGAAGAACAATCTCAGGCAGGGCC
ATATCCGGGATGTCAACCTCATGCAGGGCAATCTCATGCATCACAATCAACTTATGGTGGTTGGAATGGTTTAGAGGAGA
ACTTTTGTGATCATAAGCTAAGTGTGAACATCGACGATCCCAGTCGTGCTGACATATACAACCCGCGTGCCGGTACGATA
ACCCGTCTCAACTCCCAAACGTTCCCCATCCTTAACATCGTGCAAATGAGTGCTACAAGAGTACATCTCTACCAGGTAAT
TATGATATTGTGTTTTTTCATACTCTTTTATATTCAAAGCTTCACAATGCAATCTTAACGTTATACCTTACATAATTTAT
GATCGCAGAACGCCATTATTTCACCATTATGGAACATTAATGCCCATAGTGTGATGTACATGATCCAAGGACATATCTGG
GTTCAGGTTGTCAATGACCATGGTCGAAATGTGTTCAATGACCTTCTTAGCCCGGGGCAACTATTAATCATACCACAGAA
CTATGTTGTTCTGAAGAAGGCACAACGTGATGGAAGCAAGTACATTGAATTCAAGACTAATGCGAACTCCATGGTTAGTC
ACATCGCAGGAAAGAACTCAATTCTCGGCGCCTTGCCCGTTGATGTCATCGCCAATGCATACGGCATCTCTAGGACAGAA
GCTCGAAGCCTCAAATTTAGCAGGGAAGAGGAGTTGGGAGTATTCGCTCCTAAATTCAGTCAAAGTATCTTCCGTAGTTT
TCCTAACGGCGAAGAAGAGTCGTCTTAAGAGCGCATGAGATAATGTCAAAACTAGCTCATGGACTAAAATAAACACATCA
TTGAGTGTGTAGCACTTTGATGTTTCCATATATGGTCGTCTCAATAAGATATCAACAAAGGTCCATTGTGTTTCATATGT
TTATCTTTCTGGA----AATTTCATGAACTTTGTTTTGCAAGTTGCATTCATGAATTCTTCATCTAGATAGTGTGGATAT
GTTATCGTATTTGTAC-ACTATTCTATGTGGTAGTGTTTTCGGTTTCTCACTATAGCAATAAAAATTCTCACCATAGCAA
TAAACACCAATGTGTTTTTCGTTTGTGTTTGCACTGGCATACACGTCACTCACTTGCTAACTAAGCCTAGTAAAAAGCAG
TGTGTGGTGGCTACGGCCAGCTCAATACATTCTTCTATGTGCCATTGGCCCCATTTCACTTGTGTTGTCTTCTGCAAAAA
GTC-----------------------------------------------------------------------------
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-----------------------------ATATGGTTGTTGGGTGAGTAATTTGTGGTTCACCCTTAAGACGAATGAAGG
ATGATGTAGATTTCTAGTGTGCCCTTGAGTTCTTCCTTTGCAATTGGGTTCAACTCTTTCTATATAAGGAAATTAGGTCT
GGCCATTATCCAACTTG-ATATTTGATGGCCGCCACTTTCTTTTT-GAAATTGTG--------TGTGCCACTAACGATTG
CAAATAAATTGGGCACAAGCCCTGTGCGTCGTTAGAGCAAGTTGCCGCCGGGTTCTCACCTCATTGCCACCTCCTTTGAC
CCATTTCTTCTTATGTGAGTCTCATTTGTTGCCACGTCTTCAATAACAGAGGGGAGACTCATATGAAACATCCATTTGAT
GTGTTGGCCATCATTTGGCCACGTTGTGAACAATGAATAGGAGAGCCAACATCAGCGCTCGAGCTCCTTCTCTTCCAGCT
ACCGCCGCACACCAA-TTAGGCCATTCTAGACCCTACATGTGCATTTCGAGTCAATTGCAAGAAACTACCATATTTGCGG
CTAGGTTTGCGAAAAACCACCAAGTCGCTA
>chr1B_1
TTTTTGAATGTATGGTATTGTTTTCGAAAATATGAGCAAAAG-AAATAAAGTCGAATGAATAAACAAATAAAACTGAAGT
AACCTGCAGCAGGCTACTTGGGCCAGGCGAACCACACGCTC--TGTAGGCGAGGGGGGCTTCTATCTGGTGTCGTGCAAG
GTATAGACGCGCGCCCCTTTTCGTCTCGGGTTCAATTTTTCAAGCCAGCCAATGTGTTTGGTCATCTGT-----------
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------------------------------------------------------------GTAGAAATGTTGGGTCAACA
GCCCATAAGATAATTAAGAC---------------T---------------ACGGCCTCATTTGCGTGGAGATGCCTCTT
CTCTTTTAAACGGGAACAAAACAAGTGTGCATCTTTTCTACTCTAGTCTAGTCTAATAAAAACAGCGTTGGTAATGATGG
TATGCCTGCCATCCTGCAATATAGGTCGTTCGATTTATATCTGACGGATAGGAAGGAAACTATTGCAATTTTGCAAAAAG
GTACCCACATCTCTCTCCACATTTGCAAATAAGGCCTTCCCTCGTTCATTCTTCTCTCTCACAAGATAAACTACTCATAC
AAATGCATCTTGATGTTACGTGCAACGCATGAGCATCTTGCTAGTCCCTAAAAAAAGTTGTGATTAGTTTGCTCCAA---
-TGCCTTTTCTTCTTATCTGAACTTTTCATATCTGCACTCCTTGTATCCAGATGGATAATGCATCATCGTGGAAAACTTC
TTTT-ATCCTTATCCTGA---TACGTATTAAGTGTGTGCCTACGTGGATGTGTGTCATCTAATATACACTACTTTGGCGA
AGCAAAATGTCATCATCACACAAGTGCAAAAGTATCCAAATGTATT-GTTATGCAGCAACTAAAGTGATGTTTCCAGTTA
GCGGTGCAATAAACAAACAAGCATAAAAGCGAGCACTAGACAGAAGTTGGTACAGATATGTTTTAGAAGTTTGTAAGTTA
CGTGAAAAAGAAACACTTAACCAACGTGTACGAAAACCTTTCTAGAAATAATGATGTAGATGATCGTTAAAGACAACACA
GAAAGCATTTTCTATGTTTGCTTGCAGTCATATATAACTTTAACTCATGAGAGTTGGTTAGAGCCACTCAACTTTCCAAT
TGTCGAAATTATCATATGTTCTACATATTTATCTTAACAAATCTTGTATCTACATAAGTTCTAGGTAGATTTTGTT-GGC
TATAAAAGCCACACACATCTCCCAACCCTAACATCAAGAAAACTTCTCTCTCCTCTTCAAACAGCTATGTCAGCCACTAG
TTTTGTATCGCTCTCTTTTTACTTTTGCATTTTGCTCTTGTGCCATGGCTCCATGGCACAACTATTTGGCATGAGCTTTA
ACCCATGGCAAAGCTCTCGCCAAGGGGGTTTCAGAGAGTGTACACTCAATAGGCTACAAGCATCTACACCACTTCGTCAA
GTGAGGTCGCAAGCAGGCCTAACCGAGTATTTTGATGAGGAAAATGAGCAGTTTCGTTGCATTGGTGTATTTGTCATCCG
TCGTGTAATCGAACCTCGTGGTTATTTGTTAC-GCGATACCACAACACTCATGGATTAGTCTACATCATCCAAGGTCTGT
GTAGCAATTCAATTAATGTAGTTACCATTTGAT-----------------------------------------------
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----------------------------------------------------------------ATTACTAATAGTTTCT
TGAGATAAAGGTTACTATTTTTAGTAT----TTTATCAATAAGTTTCTAACACTAACATGCACATATGTTTTCACCCAGG
AAGTGGTTCTGCCGGATTGTCTTTTACTGGATGCCCAGAGACATTCCAAAAACAGTTTCAAAAATATGGGCAAGCACAAT
TCGTACAGGGTCAAAGCCAAAGCCAAAAGTTCAAAGATGAGCACCAGAAGGTTCACCGTTTCAAACAAGGAGATGTCATT
GCACTACCGGCAGGCATTGTACATTGGTTCTACAATGACGGTGATGCGCCAATTGTGGCTATCTATGTTTTCGACGTAAA
CAACAATGCTAATCAACATGAAACTAGGCATAAGGTAACAAAAAATCTTTGGGACAAATCTATGTGGGGTCAATAAGTCT
ATTCAACTAACCTACTGTATTTAATGTTGTTTAC-AAGTGGCATGTTGTTTAATTTCTCTTCTTGATCAAACTTGTAGGA
ATTTTTGTTGGCTGGCAACTATAGGAGTTCGCAACTTCACTCTAGCCAAAACATATTCAGTGGTTTCGATGTTCGGTTGC
TTGGTGAGGCCTTGGGTACAAGTGGAAAAATAGCGCAAAGGCTTCAAAGTCAAAATGAAATGGGTGACATAATCCATGTG
AATCATACTCTTAAATTTATAAAGCCTATTTTTACACAACAGCGAGAGCAAGAATCCTACCCACACACTCAATATGAGGA
AGGGCAATCTCAGGCAAAACACTCTCAAGAAGAGCAACCTCAAATGGGGCAGTCTCACGGAGAGCAATCTCAAATGGGGT
AGTCTCACGGAGAGCAACCTCAAATGGGGCAGTCTCAAGGAAAGCACATTCAGGGAGAGCAACCTCAAATGGGGCAGTCT
CAGGGAAAACACTATCAAGGAGACCAACCTGAAGAAGGGCAGGGAGGGCAATCTCAAGAAGAGCAATCTCAGGCAGGGCC
ATATCCGGGATGTCAACCTCATGCAGGGCAATCTTATGCATCACAATCAACTTATGGTGGTTGGAATGGTTTGGAGGAGA
ACTTTTGTGATCATAAGCTAAGTGTGAACATCGACGATCCCAGTCATGCTGACATATACAACCCGCGTGCCGGTACAATA
ACACGTCTCAACAGCCAAACGTTCCCCATCCTTAACATCGTGCAAATGAGTGCTACAAGAGTACATCTCTACCAGGTAAT
TATGATATTGTGTT-TTTCATACTCTTATATGTTCAAAGCTTCACAATGCAATTCTAACATTACACCATACATAATTTGT
GATCGTAGAATGCCATTATTTCACCATTATGGAACATTAATGCTCATAGTGTGATGTACATGATCCAAGGACATATCTGG
ATTCAAGTTGTCAATGACCATGGTCGAAATGTGTTCAATGGCCTTCTTAGCCCGGGACAACTATTAATCATACCACAAAA
CTATGTCGTTCTGAAGAAGGCACAACGTGATGGAAGCAAGTACATTGAATTCAAGACTAACGAAAACTCCATGGTTAGTC
ACATCGCAGGAAAGAACTCAATTCTCGGTGCCTTGCCCGTTGATGTCCTCGCCAATGCATTCGGCATCTCTAGGACAGAA
GCTCGGAGCCTCAAATTTACCAGGGAAGAGGAGCTGGGAGTATTTGCTCCTAAATTCAGTCAAAGTATCTTCGATAGTTT
TCCTAAGGGTGAAGAAGAGTCACCTTCAAAGTGCATGAACTAATGTCAGAACTAGCTCATGGAATAAAATAAAGACATCA
GTGAGTGTGTAGAACTTTGATGTTTCCATATATGGTCATCTCAATAAGATATCAACAAAGGTTCATTGTGTTTCATATGT
TTATCTTTCTGGAAGGAAATTTCATGAACTTCGTTTCGCAAATTGCATTAGCCAATTCTTCATCTAGACAGTGTGCATAT
TTTATCGTATCTATACTGCTATTCTATGTGGTAGTGTTTGTCGTTTCTCACCGTAGCAATACAAATTCTCACTGTAGCAA
TGAACACCAATGTGTTTTTCTTTTGTGTTTGCACTGACATACACGTCACTCACTTGCTAACTAAGCCTAGTAAACACCAG
TGTGTGGTGGCTACGGTCAGCTTAATACATTCTTCTATGTGCCATTGGCCCCATTTCACTTGTGTTGTTTTCTGCAAAAA
C-C-----------------------------------------------------------------------------
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-----------------------------ATATGGTCGTTGGGTGAGTAATTTCTCATTCATGCTTAAGACGAATGGACG
ATGATGTAGACTTGTAGCGTGCACTTGAGTTCTTCCTTTGCAATTGGGTTTAAGTCTTTCTTTATGGGGAAATTAGGTCT
GGGTACTATATCCAACTTATATTCGATGCCCGCCACTTTTTTTTTTGAAATTGTGGTTGTGCTTGTGCCACTAATGATTG
CAAATAAATTGGGCACAAACCCTGTGCGTCTGCCACCAA------------GTTTTCACCTCATTGCCACCTCCTTTGAC
CCATTTCTTATTCTGTGGGTCTCATTTGTGG---------CAATAACGGAGGGGAGACTCATATGAAACATCCATTCGAT
GTGTTGGCCATCATTTGGCCACGTTGTCAACTATGAACAGAAGAGCCAACATCAGCGCTCGAGCTCCTTCTCTTTCAGCT
ACCGCTGCACACCTAGTTTGGCCATTCTAGACCATACATGTGCA------------------------------------
------------------------------
>chr1A_1
TTTTTGAATGTATGGTATTGTTTTCGAAAATATGAGCAAAAGTAAATAAAATCGAATGAATAAACAAATAAAACTGAAGT
AACCTGCAGTAGGATACTTGGGCCGGGCGAACCAGACGCTCGCTGTAGGCGAGGGGGGTTTCTATCTCGTGTCGGGCGAG
GTAT------------------------------------------AGCCAA--TGTTTGGACATCTGTACTCTTAAATA
GGAGAGCTCCTCTTCGGCGCCCTCAGCGCCGCTTAGGCCACCTGGCGCCCGAAGGCAAGCGGTAATGGGCCGGCCCAGCA
TAGCTCGCTAAAATAAATCGGACAAAAAGGAACTATATTCTGCTAGTAGTGGGATTCAAACTAGGATGCGAACGCTGCAG
CAGTAGACGCAACAACCACCGCACCTGACTGTCTTTGACGATATCAATGCGAAAACACACACTACGAGACCCGTGGTTCA
GTCCCAGTATAATTTATTTGAAAAAAATTGAAATATGAAAAAGAATTCACGAATTTGAAAAAACTCAATTTTAAAAATAA
GTTCATCACTTTTGAAAAAAGTTCATAAAAGTTCACAAATTTGCAAAGAGTTCACCGAATTTTTTAAAAAGTTCATCAAT
TTCGATCAAAAAGTTCATAGATTTAAAATATTTCATCAATTTTGATAAGAAAAGTTCACAAATTTGAAAAGAGTCCACGG
AATTTTGAAAAAAATCATGGGTTTGAAAAAAGTTCAGCAAATTTCGATAAAAAAGTTCACTTCTTTGAAAAAGGTTCACG
GATTTTCAAAAAAAGTTCACAAATTTGAAAAGAGTTCACGGAATTTTTAAAAAAGTTCATGGGTTTGAAAAAAGTTCAGC
AAATTTCGATTAAAAAGTTCACTTCTTTGAAAAAGGTTCACGGATAAAAGTTCACAAATTCGAAAACTTCATTTAATTTT
GAGGAAAAAGTTCAAGAATTGGGAAAATGTTCACTGGAGTTTTTGTTAAATCATGCATTTAAGAAAAAGAAAGGAACAAG
AAAAGGAAAAAGGGGAAAGAAAAAGAAAGGAAAATGCAATAAAAGAATGAAAAGGATCTTGCAAATTAAAGCAACGTACT
TGCGTAGTGGGCTACCGCAGCTTAGGTAGTTGGAGGGATGTTGATAGGTCGCGAGTTCGAATTTCCGCGGCGCAGGCTTT
TGCAGTTTGAAACAGAAAAAATAGGTATAAATGGGCCGGCCCATCGGACAGGGAGGGTATGCGCCCGTTTGCCAAAACGC
CTGGAACGGGCGCTTAAGGCGCCGAATAGGGTTCGGCCTTAAATAGGGCACTCCATCAGTGTAGAAATGTTGGGTCAACA
GCCCATAAGATAATTAAGACTGGACCTATTACTAAT---------------ACGGCCTCATTTGCGTGGAGATGCCTCTT
CTCTCTTAAAAGGGAACAAAACAAGTGTGAATCTTTCCCTC---------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------AAAAAAAGGTGTGATTAGTTTGCTCCAACAA
GTGTTTTTTCTTCTTATCTGAACTTTTCATATCTGCACTCCTTGTATCCAGATGGATAATGCATCATCATGGAAAGCTGC
TTTTTTTCCTTATCCTGA---TACGTATTAAGTGTGTGCCTACGTGGATGTGTGTCATCCAGTATACACTACTTTGGCGA
AGCAAAATCTCATCATCACACAAGTGCAAAACTATCCAAATGTATTTGTTATGCAGCAACTAAAGTGATGTTTCCAGTTA
GCGGTGCAGTAAACAAACAAGCATAAAAGCGAGCACTAGACAGAAGTTGGTACAGATATGTTTAAGAAGTTTGTAAGTTA
CGTGAAAAAGAAACACTTAACCAACGTGTACGAAAACCTTTCTAGAAATAATGATGTAGATGATCGTTAAAGTCAACACA
GAAAGGATTTTCTATGTTTGCGTGCAGTCATATATAACTTTAACTCATGAGAGTTGGTTAGAGCCACTCAACTTTCCAAT
TGTCGAAATTATCATATGTTCTACATATTTATCTTAACAAATCTTGTCTCTACATAAGTTCTAGGTAGATTTTGTTTGGC
TATAAAAGCCACACACATCTCCCAACGCTAACATCAAGAAAACTTCTCTCTCCTCTTCAAACAGCCATGGCAGCCACTGG
TTTCGCTTCGCTCTTTTTTTACTTTTGCATTTTGCTCTTGTGCCATAGCTCCATGGCACAACTGTTTGGCATGAGCTTTA
ACCCATGGCAAAGCTCTCGCCAAGGGGGTTTCAGAGAGTGTACATTCAATAGGCTTCAAGCATCTACACCACTTCGTCAA
GTGAGGTCACAAGCAGGCCTGACTGAGTATTTTGATGAGGAAAATGAGCAATTTCGTTGTGCTGGTGTATTTGTCATCCG
CCGTGTAATCGAACCTCGTGGTTATTTGTTACCACGATACCACAACACTCACGGATTAGTCTACATCATCCAAGGTTTGT
GTAGTAATTTAATTAATATAGTTACCATTTCATCGAAAATGCCTTTTGGAGCTCGGCCTCCATGGAGGCCGGTTTTTGAA
AAATACAAAAATCATGAAAATTCATATTTTTACAATTCAAAAAAATCTGAAAAAAATTACAGATATACATGGAGGCATAA
CACACATGTGTGTAAATTTTTAGGACGAAATACGTTGAAATGAAGGCTGTGCAAAAAAGAAAAATCTGAGGCCTTTTAAC
ACATGTTACTATTCATCCTCAAAGTCCAGAAATTTGTCTTTTTTCTATAGGTCGCATTTCGAAGTATTTCATCTTGAATT
TTTACACACACATGCATTTCATCCGTGTATAGTTACATATTTATTTTCAGAATTTTTTGAAGTCAAAAAGTTTGAATTTT
GAATTTTTCAAAAATAAAGGGCTCCATGGAGCTCGGTCACCAAAACGCCCTACTCCCATTTCATATTACTAATAGTTTCT
TGAGATAAAGGTTACTATTTTTAGTATTTTATTTGTCAATAAGTTTCTAATACTAACATGCAGATATGTTGTCACCCAGG
AAGTGGTTTCGCCGGATTGTCTTTTCCTGGATGCCCAGAGACATTCCAAAAGCAGTTTCAAAAATATGGGCAAGCACAAT
CCGTACAGGGTCAAAGCCAAAGCCAAAAGTTCAAAGATGAGCACCAAAAAGTTCACCGTTTCAGACAAGGAGATGTCATT
GCACTACCGGCAGGCATTGTACATTGGTTCTACAATGACGGTGATGCGCCAATTGTGGCTATCTATGTTTTCGACGTAAA
CAACTATGCTAATCAACTTGAGCCTAGGCATAAGGTAACAAATGATCTTTGAGACAAATCTATGTGGGGTCAATAAGTCT
ATTCAACTAACCTGTTGTATTTAATGTAGTTTACAAAGTGACATGTTGTTTAATTTCTCTTCTTGATCAATCTTGTAGGA
ATTTTTGTTCGCTGGCAACTATAGGAGTTCCCAACTTCACTCTAGTCAAAACATATTCAGTGGTTTCGATGTTCGATTGC
TTGCTGAGGCCTTGGGTACAAGTGGAAAAATAGCGCAAAGGCTTCAAAGTCAAAATGA------TGACATAATTCATGTG
AATCATACCCTTAAATTTCTGAAGCCTGTTTTTACACAACAACGAGAGCCAGAATCCTACCCACACACTCAATATGAGGA
ACGGCAATCTCAGGCAAAACACTCTCAGGAAGAGCAACCTCAAATGGGGCAGTCTCAG----------------------
--------GGAGAGCAACCTCAAACGGGGCAGTCTCAGGGAAAGCACATTCAGGGAGAGCAACCTCAAATGGGGCAGTCT
CAGGCAAAACACTATCAAGGAGACCAACCTGAAGAAGGGCAGGAAGGGCAATCTCAAGAAGAACAATCTCAGGCAGGGCC
ATATCCGGGATGTCAACCTCGTGCAGGGCAATCTCATGCATCACAATCAACTTATGGTGGTTGGAATGGTTTGGAGGAGA
ACTTTTGTGATCATAAGCTAAGTGTGAACATCGACGATCCCAGTCGTGCTGACATATACAACCCGCGTGCCGGTACAATA
ACCCGTCTCAACACCCAAACGTTCCCCATCCTTAACATCGTGCAAATGAGTGCTACAAGAGTACATCTCTATCAGGTAAT
TATGATATTGTGTTTTTTCATACTCTTTTATATTCAAAGCTTCACAATGAAATTCTAACGTTATACCTTACATAATTTAC
GATCGCAGAATGCCATTATTTCACCATTATGGAACATTAATGCTCATAGTGTGATGTACATGATCCAAGGACATATCTGG
GTTCAGGTTGTCAATGACCATGGTCGAAATGTGTACAATGGCCTTCTTAGCCCGGGGCAACTATTAATCATACCACAGAA
CTATGTTATTATGAAGAAGGCACAACATGATGGAAGCAAGTACATTGAATTCAAGACTAATGCAAACTCCATGGTTAGTC
ACATCGCGGGAAAGAGCTCAATCCTCGGCGCCTTGCCCGTTGATGTCATCGCCAATGCATACGGCATCTCTAGGACAGAA
GCTCGAAGCCTCAAATTTAGTAGGGAAGAGGAGCTGGGAGTATTCGCTCCTAAATTCAGTCAAAGTATCTTCCATAGTTC
TCCTACCAGCGAAGAAGAGTCATCTTAAGAGCGCATGAGCTAATGTCAAAACTAGCTCATGGACTAAAATAAACACATCA
TTGAGTGTGTAGCACTTTGATGTTTCCATATATGGTCTTCTCAATAAGATATCAACAAAGGTCCATTGTGTTTCATATGT
TTACCTTTCTGGA----AATTTCATGAACTTTGTTTTGCGAGTTGCATTCGCGAATTCTTCATCTAGATAGTGTGCATAT
GTTATCGTATTTGTACTACTATTCTATGTGGTAGTGGTTCTCGTTTCTCATTGTAGCGATACAAATTCTCACCATAGCAA
TAAACACCAATGTGTTTTTCATTTGTGTTTGCACTGACATAAACATCACTCACTTGCTAACTAAGCCTAGTAAACACCAG
TGTGTGGTGGCTACGGTCAGCTCAATACATTCTTCTATGTGCCATTGGCCCCATTTCACTTGTGTTGTCTTCTGCAAAAA
TCATATCATTGATGAATTAGAAGCTTTAGCAGAGGTTAGACCTCTATCTGAGCATGAAATCAAGATCAAGAATCAGTCGA
ATGCACAGATAGCTAACATGCTGCGTGAAGAGGAACTCAAATGGTACCAACATTCTAACTCTCAATTTATCCTGAAAGGT
GATTCGAATACTAGATATTTCCATGGAGTCGCCAATGGCAGACACCGGAAGAAAATTATTCATTCCCTACAACAGGATGA
GGGAGTGATTGAGGGGCATGAGCAACTTAAATCTTATATCACTAATTATTATAAAAATCTGTTCGGAGCCCCAGAGGAAG
GAAACTTCTTGATGGATGAGACCCGAACAGATGACATCCCTCGGGTCTCTGATGAGGAAAACAACCTTCTAACAGCCCCA
TACTCCGAGGAGGAACTTAGAAAGGCGGTTTTCCTAATGGAGCATAACAAAGCCCCGGGTCGGATGGTTTTCCCGCTAAG
TTCTATCAGAAATTCTGGCAAGTCATCAAACCGGATCTCCTACTTTTGTTTACCGACCTACATGCTGGCCAACTAGAATT
GTTTCACTTAAACTTCGGTGAGATTATTTTATTACCTAAGGTTAATGAGGCAGAAAGGATACAACAATATAGACCTATTT
GCCTCCTTAATGTTAGTTTTAAAATATTCACGAAGGTTGCGACTATTAGGCTGAATTCGGTTGCTGAACATGTGGTTCGG
CCTTCACAGACAGCTTTTATGCAAGGCAGACACATCCTAGATGGAGTTGTTATCCTTCATGAAATAGTCCATGAATTACA
CCGGAAAAAGTTAAATGGGGTGGTACTCAAAATAGACTTTGAAAAGGCTTATGACAAAGTCAAGTGGCCTTTTCTCCAAC
AGACTCTCAGAATGAAAGGATTTTCTGCAGAGTGGCGCACGATGATCCATAGCTTCGTTTCTGGAGGTAGTGTTGCCATT
AAGGTCAATGATGACATTGGACACTATTTCCAAACAAAGAAGGGATTGCGACAGGGTGACTCGATATCGCCCATGCTATT
CAATATAGTGGCGGATATGCTAGCGGTCATGATTGAGCGTGCCAAGGTTGATGGCCAAATTGATGGGGTAGTAAATCATC
TAGTTGATGGTGGTCTCTCTATACTTCAATATGCTGATGATATGATTCTCTTCATGGATCATGACCTCGAGAAAGCAAGA
AATCTGAAACTGATTTTATCAGCATTCGAGCAACTCTCGGGTCTAAAGATCAATTTTCATAAAAGTGAATTGTTTTGCTT
CGGCGAGGCTCAAGACGAGGCCCACCTGTACGCTAAACTGTTCGGATGTGGGTTGGGTCAGTTTCCGATCACATACTTGG
GGACACCGATACATTATCGGAGACTCGCAAATGCTGAATGGAAACACGTTGAGGAGAGACTGCAAAAAAGACTTAGCAGT
TGGAAAGGTAAACTGCTGTCTCTGGGTGGAAGAGTGGTCCTCATAAATTCAGTACTTAGTAATATGGTACTATATATGAT
TTCCTTCTTCCAGTTACCGAAAGGAGTTTTACATAGATTGGATTACTTCCGATCAAGATTTTTTGGCAAGGAGATAGCGA
GAGAAAGAAATATCGACTGGCTAAATGGAGTGTGGTTTGCCGTCCCAAAGACCAAGGCGGATTGGGCATTCATGACCTTG
AGGTTAAGAATAGGGCCCTCCTCGGCAAATGGTTGTTTAAATTACTAACGGAAGATGGTGTATGGCAAACCTTCCTAAGG
AGGAAATATGTGGGTTCCAAGGCGGTATCCCAAGTATATTGGAAGCCTGGGAATTCCCACTTTTGGGCAGGTCTAATGGC
TACGAAGAAATATTTCTTCTGCTATGGATCCTTCTCAATTAAGGACGGCTCGAAAATTAGATTCTGGGAGGACAAGTGGC
TAGGAAATGCCACACTTCGGGAACAATATCCGGCTCTATACAACATTGTGCGCCACAAAGGTGATACTATCGCCACGGTA
ATGGAATCATTTCCGCCAAATGTGATGTTCAGAAGAGACTTAATTGGACCCAGACTCCATTCGTGGAATATCCTGCTCCA
ACGGTTGTCCACGGTGCAATTGTCACATGGGTTTGATGTATTCTGATGGAACCTCCATGGAAATGGACAATTCTCAGTGG
ATTCTATGTAAGAGCATTAATCCAGTCCGATGTGCCAGTTGTTAATAACAAGAAAATCTGAAAGATGAAGATACCTCTTA
AGAATAAAATCTTTGCATGGTATCTTCGTCGCGGAGTCATTCTTTTTAAAGATAACCTTATTAAGAGGAATTGGCGTGAA
AGCCCGCAGTGTGTATTTTGTCACCATGGGGAGACAATAAAACATTTATTCTTCCAATGCAAATTGGCTCGTTCTATATG
GTCAGTCATCCAAATAGCTTCTGGCTTGTATCCTCCCTATAGTGTTGCTAATGTATTTGGCAATTGGTTACATGGGATTG
ATCACAGGTTTAGAACTCTTCTCAGGGTGGGAGCGCTTGTCGTTATTTGGTCGCTTTGGCTATGTAGAAATGATAAGGTT
TTTAACGATAAAAGTACTTCTCTGTTGCAGGTTATCTACAGATGTACCAGGACTCTTCGTTTATGGTCCTCTTTACAACG
CTGAAGAATCGAGACTTGTTTACGGAGGTGTGTACACGATTGGAGGCTACGGCGAGGGATACTTTTACCCAACATGGGTG
GCAGCATGATCTAAGGATTGACCCCCCTCCACATTAGGCGTTATTCGGACTCTACATGTTTCGTTGTAATTCACCTCTTT
ATTTTTATTTTATGTGAGAGGATCTTATTTGGCTGTGTGCATCTTAATTATGCAGAGGCCGAGTGTAATGCTTAAATCCT
TTAAGTAATAAAGCGCCCCTTTTCGAAAAATATGGTCGTTGGGTGAGTAATTTCTCATTCGCGCTTAAGACGAATGAACG
ATGATGTAGATTTGTAGAGTGCCCTTGAGTTCTTCCTTTGCAATTGGGTTCAACTCATTTTTTATGTGGAAATTAGGTCT
GGCCACTATCCAACTTG-ATATTTGATGCCCGCCACTTTTCTTTT-GAAATTGTGGTTGTG-------CACTAACGATTG
CAAATAAATTGGGCAGAAGCCCTGTGCGTTTGCCACCAA------------GTTTT-----------CACCTCATTTGAC
CCATCTTTTCTTTTGTGAGTCTCAATGCTGG---------CAATAACGGAGGGGAGACTCATATGAAACATCCATTCGAT
GTGTTGGCCATCATTTGGCCATGTTGTCAACTATGAATATGAGAGCCAACATCAGCGCTCGAGCTCCTTCTCTTCCAGCT
ACCGCCGCGCACCTAGTTAGGCCATTCTAGACCCTACACGTGCATTTC--------------------------------
------------------------------
>chr1D_2889
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-----------------------------------------------------------------------TGGTTAGTC
ACGTCGCAGGAAAGAACTCAATCCTCGGCGCATTGCCCGTTGATGTCATCGCCAATGCATATGGCATCTCTAGGACAGAA
GCTCGAAGCCTCAAATTTAGCACGGAAGAGGAGCTGGGAGTATTCACTCCTAAATTCAGTCAAAGTATCTTCCATAGTTT
TCCTAACAGCGAAGAAGAGTCATCTTAAGAGCGCATGAGCTAATGTTAGAACTAGCTCATGGAGTAAAATAAACACACCA
TTGAGTGTGTAACACTTTGATGTTCCCATATATGGTCATCTCAATAAGTTATCAACAAAGGTTCATTGCGTTTCATATGT
TTATCTTTTTGGA----AATTTCATGAACTTTGCTTTGCAAGTTGCATTCGCGAATTCTTCATCTAGATAGTGTGCATAT
GTTATCGTTTTTGTACTACTATTCTATGTGGTGGTGTTTGTCGTTTCTCATTGTAGCAATAAAAATTCTCACCATACCAA
TAAACACCAATGTGTTTTTCGTTTGTGTTTGCACTGGCATACACGTCACTCACTTGCTAACTAAGCCTAGTAAAAA----
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>SNPs
------------------------------------------S-------------------------------------
-----------------------------------------------------------------S--S-----------
---------------------------------------------------------------------S----------
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------------------------------------SSSSSSSSSSSSSSS--------------------------S--
---------------------------------------SSSSS------------------------------------
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------------------------------------------------------------------S-------------
---------------------------S-------------------------------------S--------------
------------------SSS----------------------------S----------S-------------SSS---
-----------------S------S---------------------------------S--------------S-----S
------------------------------------------------------S--------S----------------
------------------------------S------------------------S------S-----------------
------------------------------------------------------------S------S------------
---------S--SS---------S-S------------------------------------------------------
-----------------------------SS------SS----------------S--------S---------S-----
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
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----------------S-------------------------------S------------------------S------
-------------------------------S------------------------------------------------
---S----------------------------------------------------------------------------
------------------------------------------------------S-------------------------
-----------S-----------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S----S-------S-----------S
----S--S--------S----------------------S--------S-------------------------SS----
--------S----S---S--------S-----------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------------------------------------------------S---
------------S-------------------------------------------------------------------
-----------------------------------------------------SS-------------------------
----------S--------------------------------S------------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
---------------------------------S---------------------------------------S------
---------------------S-----------------S----------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------SS-----------------------S----
---------------------------------------SSS----------S---------------------------
----------------------------------------------------------------------------S---
----------------S---------------------------------------------------------------
SS------------------------------------------------------------------------------
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------------------------------------S----------------S-SS-----S---------------S-
-------------S---S-------------------------------------------S---SS-------------
-----S----------------------S----------S----------------------------------------
------------------------------SSSSSSSS-SSSSSSSSSSSS---S-------------------------
------------S----------------S-SSSSSSSSS-------S----------------------------S---
---------------------------S---S------------------------------------------------
-------------S----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2350
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----------ACACACATCTCCCAACGCTG--------------------------------------------------
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>reverse_4076
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---------------------------------------------------------------------------GGTCT
CAGGCAAAGCACTCT-----------------------------------------------------------------
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>forward_3980
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----------------------------------------CAAATGGGGCAGTCACAGGA--------------------
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>reverse_8530
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-------------------------------------------------GGGTTCTCACCTCATTGCCA-----------
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------------------------------
