Multiple sequence alignment - TraesCS1D01G066800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G066800 chr1D 100.000 3942 0 0 1 3942 48406006 48402065 0.000000e+00 7280
1 TraesCS1D01G066800 chr1D 86.585 164 19 1 2339 2499 48403626 48403463 1.130000e-40 178
2 TraesCS1D01G066800 chr1D 86.585 164 19 1 2381 2544 48403668 48403508 1.130000e-40 178
3 TraesCS1D01G066800 chr1B 90.540 1427 92 15 1095 2499 68087691 68086286 0.000000e+00 1847
4 TraesCS1D01G066800 chr1B 86.788 1650 86 46 2375 3942 68086455 68084856 0.000000e+00 1718
5 TraesCS1D01G066800 chr1B 84.627 657 38 30 247 897 68088489 68087890 2.620000e-166 595
6 TraesCS1D01G066800 chr1B 82.305 243 33 8 1 236 625313212 625313451 6.680000e-48 202
7 TraesCS1D01G066800 chr1A 88.027 1495 94 46 1061 2499 48594668 48593203 0.000000e+00 1690
8 TraesCS1D01G066800 chr1A 86.897 1595 79 46 2375 3910 48593372 48591849 0.000000e+00 1668
9 TraesCS1D01G066800 chr1A 80.974 431 37 26 345 752 48598379 48597971 2.300000e-77 300
10 TraesCS1D01G066800 chr1A 82.759 232 34 5 19 248 579772409 579772182 6.680000e-48 202
11 TraesCS1D01G066800 chr1A 89.691 97 2 6 803 897 48594916 48594826 2.490000e-22 117
12 TraesCS1D01G066800 chr3D 83.817 241 29 7 4 237 12216590 12216353 1.840000e-53 220
13 TraesCS1D01G066800 chr3B 82.946 258 31 9 1 248 740034370 740034624 1.840000e-53 220
14 TraesCS1D01G066800 chr3B 83.539 243 29 7 1 236 294047011 294047249 2.390000e-52 217
15 TraesCS1D01G066800 chr5D 83.265 245 30 7 1 237 445875807 445876048 8.580000e-52 215
16 TraesCS1D01G066800 chr5D 84.000 225 30 3 4 223 558449525 558449302 1.110000e-50 211
17 TraesCS1D01G066800 chr5A 82.917 240 32 6 5 237 683280138 683279901 1.440000e-49 207
18 TraesCS1D01G066800 chr6D 81.967 244 34 6 1 237 76062734 76062974 8.640000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G066800 chr1D 48402065 48406006 3941 True 2545.333333 7280 91.056667 1 3942 3 chr1D.!!$R1 3941
1 TraesCS1D01G066800 chr1B 68084856 68088489 3633 True 1386.666667 1847 87.318333 247 3942 3 chr1B.!!$R1 3695
2 TraesCS1D01G066800 chr1A 48591849 48598379 6530 True 943.750000 1690 86.397250 345 3910 4 chr1A.!!$R2 3565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
542 546 0.101759 GAGCAGCAGAGCAGAGAGAG 59.898 60.0 0.0 0.0 36.85 3.20 F
2384 5574 0.107456 AGATGCTATCACCTTGGGCG 59.893 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 5560 0.105039 GGAGACGCCCAAGGTGATAG 59.895 60.0 0.25 0.00 36.58 2.08 R
3455 6748 0.027455 CTCGCTGTAGCTCTCACGAG 59.973 60.0 18.51 18.51 40.70 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.913126 GGAGACGCAAACCGATCT 57.087 55.556 0.00 0.00 41.02 2.75
18 19 3.139029 GGAGACGCAAACCGATCTT 57.861 52.632 0.00 0.00 41.02 2.40
19 20 2.288961 GGAGACGCAAACCGATCTTA 57.711 50.000 0.00 0.00 41.02 2.10
20 21 2.194271 GGAGACGCAAACCGATCTTAG 58.806 52.381 0.00 0.00 41.02 2.18
21 22 2.159282 GGAGACGCAAACCGATCTTAGA 60.159 50.000 0.00 0.00 41.02 2.10
22 23 3.491104 GGAGACGCAAACCGATCTTAGAT 60.491 47.826 0.00 0.00 41.02 1.98
23 24 3.707793 AGACGCAAACCGATCTTAGATC 58.292 45.455 11.92 11.92 41.02 2.75
24 25 2.460918 ACGCAAACCGATCTTAGATCG 58.539 47.619 30.75 30.75 41.02 3.69
34 35 5.643339 CGATCTTAGATCGGAAAAACAGG 57.357 43.478 30.26 4.70 37.84 4.00
35 36 5.348986 CGATCTTAGATCGGAAAAACAGGA 58.651 41.667 30.26 0.00 37.84 3.86
36 37 5.810587 CGATCTTAGATCGGAAAAACAGGAA 59.189 40.000 30.26 0.00 37.84 3.36
37 38 6.312918 CGATCTTAGATCGGAAAAACAGGAAA 59.687 38.462 30.26 0.00 37.84 3.13
38 39 7.148474 CGATCTTAGATCGGAAAAACAGGAAAA 60.148 37.037 30.26 0.00 37.84 2.29
39 40 7.811117 TCTTAGATCGGAAAAACAGGAAAAA 57.189 32.000 0.00 0.00 0.00 1.94
62 63 5.803020 AAAAGTCGATCAAGATAACTGGC 57.197 39.130 0.00 0.00 0.00 4.85
63 64 3.085443 AGTCGATCAAGATAACTGGCG 57.915 47.619 0.00 0.00 0.00 5.69
64 65 2.128035 GTCGATCAAGATAACTGGCGG 58.872 52.381 0.00 0.00 0.00 6.13
65 66 1.068588 TCGATCAAGATAACTGGCGGG 59.931 52.381 0.00 0.00 0.00 6.13
66 67 1.068588 CGATCAAGATAACTGGCGGGA 59.931 52.381 0.00 0.00 0.00 5.14
67 68 2.760374 GATCAAGATAACTGGCGGGAG 58.240 52.381 0.00 0.00 0.00 4.30
68 69 1.860641 TCAAGATAACTGGCGGGAGA 58.139 50.000 0.00 0.00 0.00 3.71
69 70 1.757118 TCAAGATAACTGGCGGGAGAG 59.243 52.381 0.00 0.00 0.00 3.20
70 71 1.757118 CAAGATAACTGGCGGGAGAGA 59.243 52.381 0.00 0.00 0.00 3.10
71 72 1.698506 AGATAACTGGCGGGAGAGAG 58.301 55.000 0.00 0.00 0.00 3.20
72 73 1.215673 AGATAACTGGCGGGAGAGAGA 59.784 52.381 0.00 0.00 0.00 3.10
73 74 2.032620 GATAACTGGCGGGAGAGAGAA 58.967 52.381 0.00 0.00 0.00 2.87
74 75 1.933021 TAACTGGCGGGAGAGAGAAA 58.067 50.000 0.00 0.00 0.00 2.52
75 76 1.056660 AACTGGCGGGAGAGAGAAAA 58.943 50.000 0.00 0.00 0.00 2.29
76 77 1.056660 ACTGGCGGGAGAGAGAAAAA 58.943 50.000 0.00 0.00 0.00 1.94
77 78 1.002544 ACTGGCGGGAGAGAGAAAAAG 59.997 52.381 0.00 0.00 0.00 2.27
78 79 0.321653 TGGCGGGAGAGAGAAAAAGC 60.322 55.000 0.00 0.00 0.00 3.51
79 80 1.027255 GGCGGGAGAGAGAAAAAGCC 61.027 60.000 0.00 0.00 36.32 4.35
80 81 1.362406 GCGGGAGAGAGAAAAAGCCG 61.362 60.000 0.00 0.00 0.00 5.52
81 82 0.246635 CGGGAGAGAGAAAAAGCCGA 59.753 55.000 0.00 0.00 0.00 5.54
82 83 1.337823 CGGGAGAGAGAAAAAGCCGAA 60.338 52.381 0.00 0.00 0.00 4.30
83 84 2.351455 GGGAGAGAGAAAAAGCCGAAG 58.649 52.381 0.00 0.00 0.00 3.79
84 85 1.735018 GGAGAGAGAAAAAGCCGAAGC 59.265 52.381 0.00 0.00 40.32 3.86
85 86 2.417719 GAGAGAGAAAAAGCCGAAGCA 58.582 47.619 0.00 0.00 43.56 3.91
86 87 2.808543 GAGAGAGAAAAAGCCGAAGCAA 59.191 45.455 0.00 0.00 43.56 3.91
87 88 2.810852 AGAGAGAAAAAGCCGAAGCAAG 59.189 45.455 0.00 0.00 43.56 4.01
88 89 2.808543 GAGAGAAAAAGCCGAAGCAAGA 59.191 45.455 0.00 0.00 43.56 3.02
89 90 2.810852 AGAGAAAAAGCCGAAGCAAGAG 59.189 45.455 0.00 0.00 43.56 2.85
90 91 2.550180 GAGAAAAAGCCGAAGCAAGAGT 59.450 45.455 0.00 0.00 43.56 3.24
91 92 2.952310 AGAAAAAGCCGAAGCAAGAGTT 59.048 40.909 0.00 0.00 43.56 3.01
92 93 3.003793 AGAAAAAGCCGAAGCAAGAGTTC 59.996 43.478 0.00 0.00 43.56 3.01
93 94 0.868406 AAAGCCGAAGCAAGAGTTCG 59.132 50.000 0.00 0.00 45.12 3.95
96 97 4.988065 CGAAGCAAGAGTTCGGGA 57.012 55.556 0.00 0.00 42.47 5.14
97 98 3.210857 CGAAGCAAGAGTTCGGGAA 57.789 52.632 0.00 0.00 42.47 3.97
98 99 1.508632 CGAAGCAAGAGTTCGGGAAA 58.491 50.000 0.00 0.00 42.47 3.13
99 100 1.871039 CGAAGCAAGAGTTCGGGAAAA 59.129 47.619 0.00 0.00 42.47 2.29
100 101 2.289547 CGAAGCAAGAGTTCGGGAAAAA 59.710 45.455 0.00 0.00 42.47 1.94
101 102 3.607078 CGAAGCAAGAGTTCGGGAAAAAG 60.607 47.826 0.00 0.00 42.47 2.27
102 103 3.208747 AGCAAGAGTTCGGGAAAAAGA 57.791 42.857 0.00 0.00 0.00 2.52
103 104 2.879026 AGCAAGAGTTCGGGAAAAAGAC 59.121 45.455 0.00 0.00 0.00 3.01
104 105 2.879026 GCAAGAGTTCGGGAAAAAGACT 59.121 45.455 0.00 0.00 0.00 3.24
105 106 3.058846 GCAAGAGTTCGGGAAAAAGACTC 60.059 47.826 0.00 0.00 0.00 3.36
106 107 4.381411 CAAGAGTTCGGGAAAAAGACTCT 58.619 43.478 0.00 0.00 34.95 3.24
107 108 4.691326 AGAGTTCGGGAAAAAGACTCTT 57.309 40.909 0.00 0.00 29.93 2.85
108 109 5.037383 AGAGTTCGGGAAAAAGACTCTTT 57.963 39.130 0.00 0.00 29.93 2.52
109 110 6.170846 AGAGTTCGGGAAAAAGACTCTTTA 57.829 37.500 4.41 0.00 29.93 1.85
110 111 6.224584 AGAGTTCGGGAAAAAGACTCTTTAG 58.775 40.000 4.41 0.00 29.93 1.85
111 112 5.306394 AGTTCGGGAAAAAGACTCTTTAGG 58.694 41.667 4.41 0.00 0.00 2.69
112 113 5.071384 AGTTCGGGAAAAAGACTCTTTAGGA 59.929 40.000 4.41 0.00 0.00 2.94
113 114 4.891260 TCGGGAAAAAGACTCTTTAGGAC 58.109 43.478 4.41 0.00 0.00 3.85
114 115 4.345837 TCGGGAAAAAGACTCTTTAGGACA 59.654 41.667 4.41 0.00 0.00 4.02
115 116 4.691216 CGGGAAAAAGACTCTTTAGGACAG 59.309 45.833 4.41 0.00 0.00 3.51
116 117 4.456222 GGGAAAAAGACTCTTTAGGACAGC 59.544 45.833 4.41 0.00 0.00 4.40
117 118 4.456222 GGAAAAAGACTCTTTAGGACAGCC 59.544 45.833 4.41 0.00 0.00 4.85
118 119 3.320673 AAAGACTCTTTAGGACAGCCG 57.679 47.619 1.92 0.00 39.96 5.52
119 120 1.187087 AGACTCTTTAGGACAGCCGG 58.813 55.000 0.00 0.00 39.96 6.13
120 121 0.896226 GACTCTTTAGGACAGCCGGT 59.104 55.000 1.90 0.00 39.96 5.28
121 122 0.896226 ACTCTTTAGGACAGCCGGTC 59.104 55.000 1.90 0.00 46.20 4.79
128 129 2.649034 GACAGCCGGTCAAGACGA 59.351 61.111 1.90 0.00 46.19 4.20
129 130 1.733399 GACAGCCGGTCAAGACGAC 60.733 63.158 1.90 0.00 46.19 4.34
136 137 2.049802 GTCAAGACGACCGGCGAA 60.050 61.111 22.10 2.75 44.57 4.70
137 138 2.049802 TCAAGACGACCGGCGAAC 60.050 61.111 22.10 15.25 44.57 3.95
138 139 3.467119 CAAGACGACCGGCGAACG 61.467 66.667 22.10 16.15 44.57 3.95
148 149 4.324991 GGCGAACGAACCCCAGGT 62.325 66.667 0.00 0.00 37.65 4.00
149 150 2.658422 GCGAACGAACCCCAGGTA 59.342 61.111 0.00 0.00 33.12 3.08
150 151 1.739196 GCGAACGAACCCCAGGTAC 60.739 63.158 0.00 0.00 33.12 3.34
151 152 1.444895 CGAACGAACCCCAGGTACG 60.445 63.158 0.00 0.00 33.12 3.67
152 153 1.079612 GAACGAACCCCAGGTACGG 60.080 63.158 0.00 0.00 33.12 4.02
153 154 2.511545 GAACGAACCCCAGGTACGGG 62.512 65.000 2.95 2.95 46.94 5.28
154 155 4.462280 CGAACCCCAGGTACGGGC 62.462 72.222 4.34 0.00 45.90 6.13
155 156 4.462280 GAACCCCAGGTACGGGCG 62.462 72.222 4.34 0.00 45.90 6.13
181 182 3.716195 CCTGGTGGCGGTCATGGA 61.716 66.667 0.00 0.00 0.00 3.41
182 183 2.124983 CTGGTGGCGGTCATGGAG 60.125 66.667 0.00 0.00 0.00 3.86
183 184 3.687321 CTGGTGGCGGTCATGGAGG 62.687 68.421 0.00 0.00 0.00 4.30
190 191 4.530857 GGTCATGGAGGCCGACCG 62.531 72.222 10.54 1.66 39.86 4.79
212 213 4.752879 GAAGGCGGCGCAGGTGTA 62.753 66.667 34.36 0.00 0.00 2.90
213 214 4.760047 AAGGCGGCGCAGGTGTAG 62.760 66.667 34.36 0.00 0.00 2.74
215 216 4.752879 GGCGGCGCAGGTGTAGAA 62.753 66.667 34.36 0.00 0.00 2.10
216 217 3.188786 GCGGCGCAGGTGTAGAAG 61.189 66.667 29.21 0.00 0.00 2.85
217 218 3.188786 CGGCGCAGGTGTAGAAGC 61.189 66.667 10.83 0.00 0.00 3.86
220 221 3.188786 CGCAGGTGTAGAAGCGGC 61.189 66.667 0.00 0.00 45.83 6.53
221 222 3.188786 GCAGGTGTAGAAGCGGCG 61.189 66.667 0.51 0.51 37.72 6.46
222 223 2.509336 CAGGTGTAGAAGCGGCGG 60.509 66.667 9.78 0.00 0.00 6.13
223 224 2.995574 AGGTGTAGAAGCGGCGGT 60.996 61.111 5.44 5.44 0.00 5.68
224 225 2.813908 GGTGTAGAAGCGGCGGTG 60.814 66.667 14.17 0.00 0.00 4.94
225 226 2.813908 GTGTAGAAGCGGCGGTGG 60.814 66.667 14.17 0.00 0.00 4.61
226 227 4.752879 TGTAGAAGCGGCGGTGGC 62.753 66.667 14.17 8.36 38.90 5.01
227 228 4.452733 GTAGAAGCGGCGGTGGCT 62.453 66.667 14.17 15.84 44.02 4.75
228 229 2.756691 TAGAAGCGGCGGTGGCTA 60.757 61.111 14.17 14.75 40.53 3.93
229 230 2.782222 TAGAAGCGGCGGTGGCTAG 61.782 63.158 14.17 0.00 40.53 3.42
233 234 4.547367 GCGGCGGTGGCTAGGATT 62.547 66.667 9.78 0.00 39.81 3.01
234 235 2.189521 CGGCGGTGGCTAGGATTT 59.810 61.111 0.00 0.00 39.81 2.17
235 236 1.444250 CGGCGGTGGCTAGGATTTA 59.556 57.895 0.00 0.00 39.81 1.40
236 237 0.600255 CGGCGGTGGCTAGGATTTAG 60.600 60.000 0.00 0.00 39.81 1.85
237 238 0.756903 GGCGGTGGCTAGGATTTAGA 59.243 55.000 0.00 0.00 39.81 2.10
238 239 1.140252 GGCGGTGGCTAGGATTTAGAA 59.860 52.381 0.00 0.00 39.81 2.10
239 240 2.210961 GCGGTGGCTAGGATTTAGAAC 58.789 52.381 0.00 0.00 35.83 3.01
240 241 2.835027 CGGTGGCTAGGATTTAGAACC 58.165 52.381 0.00 0.00 0.00 3.62
241 242 2.802057 CGGTGGCTAGGATTTAGAACCG 60.802 54.545 11.73 11.73 38.76 4.44
242 243 2.484947 GGTGGCTAGGATTTAGAACCGG 60.485 54.545 0.00 0.00 0.00 5.28
243 244 2.433239 GTGGCTAGGATTTAGAACCGGA 59.567 50.000 9.46 0.00 0.00 5.14
244 245 3.109151 TGGCTAGGATTTAGAACCGGAA 58.891 45.455 9.46 0.00 0.00 4.30
245 246 3.520317 TGGCTAGGATTTAGAACCGGAAA 59.480 43.478 9.46 0.00 0.00 3.13
246 247 3.875727 GGCTAGGATTTAGAACCGGAAAC 59.124 47.826 9.46 0.00 0.00 2.78
247 248 4.383880 GGCTAGGATTTAGAACCGGAAACT 60.384 45.833 9.46 6.76 0.00 2.66
248 249 4.809958 GCTAGGATTTAGAACCGGAAACTC 59.190 45.833 9.46 0.00 0.00 3.01
249 250 5.395435 GCTAGGATTTAGAACCGGAAACTCT 60.395 44.000 9.46 6.91 0.00 3.24
250 251 6.183360 GCTAGGATTTAGAACCGGAAACTCTA 60.183 42.308 9.46 5.84 0.00 2.43
251 252 5.975282 AGGATTTAGAACCGGAAACTCTAC 58.025 41.667 9.46 0.00 0.00 2.59
252 253 5.482878 AGGATTTAGAACCGGAAACTCTACA 59.517 40.000 9.46 2.31 0.00 2.74
290 291 1.335810 ACGAGTAGAAATCGCCGCATA 59.664 47.619 0.00 0.00 43.91 3.14
324 328 0.391130 GACGCTCAACATGGGCACTA 60.391 55.000 2.80 0.00 46.28 2.74
327 331 0.322456 GCTCAACATGGGCACTACCA 60.322 55.000 0.00 0.00 45.01 3.25
335 339 1.449070 GGGCACTACCAAGGCGTAC 60.449 63.158 0.00 0.00 42.05 3.67
370 374 2.490115 GAGAGATCTACGGGGTGCATAG 59.510 54.545 0.00 0.00 0.00 2.23
383 387 1.317431 TGCATAGTAGCACCCGTCGT 61.317 55.000 0.00 0.00 40.11 4.34
395 399 1.740296 CCGTCGTTCGATTTGCCCT 60.740 57.895 0.00 0.00 42.86 5.19
396 400 1.693083 CCGTCGTTCGATTTGCCCTC 61.693 60.000 0.00 0.00 42.86 4.30
397 401 1.011968 CGTCGTTCGATTTGCCCTCA 61.012 55.000 0.00 0.00 42.86 3.86
400 404 1.066502 TCGTTCGATTTGCCCTCATCA 60.067 47.619 0.00 0.00 0.00 3.07
403 407 2.945008 GTTCGATTTGCCCTCATCATCA 59.055 45.455 0.00 0.00 0.00 3.07
406 410 3.143728 CGATTTGCCCTCATCATCATGA 58.856 45.455 0.00 0.00 36.62 3.07
481 485 1.463056 TGGACGAAACGATTGATGTGC 59.537 47.619 0.00 0.00 0.00 4.57
506 510 3.618698 GAAAGAAGCTTTGTTGGACGAC 58.381 45.455 0.00 0.00 0.00 4.34
542 546 0.101759 GAGCAGCAGAGCAGAGAGAG 59.898 60.000 0.00 0.00 36.85 3.20
563 569 3.682292 AAAGAGATGGGACGGCGGC 62.682 63.158 13.24 8.60 0.00 6.53
586 592 4.827087 CGCAGTCGCAGGCAGGAT 62.827 66.667 0.00 0.00 38.40 3.24
643 649 4.513116 ATCGATCAGATCACGTCCAGCG 62.513 54.545 11.12 0.00 40.24 5.18
695 711 1.131218 CTCATGTTCACAGTGCGCG 59.869 57.895 0.00 0.00 0.00 6.86
696 712 2.174107 CATGTTCACAGTGCGCGG 59.826 61.111 8.83 0.00 0.00 6.46
697 713 3.726517 ATGTTCACAGTGCGCGGC 61.727 61.111 8.83 0.00 0.00 6.53
735 756 1.376037 CCGCACTCTTCCTCCAACC 60.376 63.158 0.00 0.00 0.00 3.77
740 761 1.002544 CACTCTTCCTCCAACCTGACC 59.997 57.143 0.00 0.00 0.00 4.02
741 762 0.615850 CTCTTCCTCCAACCTGACCC 59.384 60.000 0.00 0.00 0.00 4.46
742 763 0.193574 TCTTCCTCCAACCTGACCCT 59.806 55.000 0.00 0.00 0.00 4.34
743 764 1.068121 CTTCCTCCAACCTGACCCTT 58.932 55.000 0.00 0.00 0.00 3.95
779 3797 1.034838 CACGACAGGAGAGGAGAGGG 61.035 65.000 0.00 0.00 0.00 4.30
780 3798 1.454847 CGACAGGAGAGGAGAGGGG 60.455 68.421 0.00 0.00 0.00 4.79
782 3800 0.336737 GACAGGAGAGGAGAGGGGAA 59.663 60.000 0.00 0.00 0.00 3.97
790 3808 0.933700 AGGAGAGGGGAAGAGAGGAG 59.066 60.000 0.00 0.00 0.00 3.69
800 3818 0.257616 AAGAGAGGAGAGGTCGGAGG 59.742 60.000 0.00 0.00 0.00 4.30
801 3819 1.826487 GAGAGGAGAGGTCGGAGGC 60.826 68.421 0.00 0.00 0.00 4.70
870 3899 5.835113 ACTGTAATAAATGCCCACATCAC 57.165 39.130 0.00 0.00 34.62 3.06
890 3919 1.337260 CCCTAGATCATGTACCGCTGC 60.337 57.143 0.00 0.00 0.00 5.25
894 3923 0.179073 GATCATGTACCGCTGCTGGT 60.179 55.000 17.55 17.55 46.26 4.00
897 3926 0.881118 CATGTACCGCTGCTGGTTTT 59.119 50.000 18.37 4.81 43.56 2.43
898 3927 1.269448 CATGTACCGCTGCTGGTTTTT 59.731 47.619 18.37 4.52 43.56 1.94
899 3928 2.257691 TGTACCGCTGCTGGTTTTTA 57.742 45.000 18.37 1.67 43.56 1.52
901 3930 3.150767 TGTACCGCTGCTGGTTTTTATT 58.849 40.909 18.37 0.00 43.56 1.40
902 3931 3.570550 TGTACCGCTGCTGGTTTTTATTT 59.429 39.130 18.37 0.00 43.56 1.40
903 3932 3.744238 ACCGCTGCTGGTTTTTATTTT 57.256 38.095 9.77 0.00 39.99 1.82
904 3933 4.066646 ACCGCTGCTGGTTTTTATTTTT 57.933 36.364 9.77 0.00 39.99 1.94
905 3934 3.807071 ACCGCTGCTGGTTTTTATTTTTG 59.193 39.130 9.77 0.00 39.99 2.44
907 3936 4.150451 CCGCTGCTGGTTTTTATTTTTGAG 59.850 41.667 0.00 0.00 0.00 3.02
908 3937 4.981674 CGCTGCTGGTTTTTATTTTTGAGA 59.018 37.500 0.00 0.00 0.00 3.27
910 3939 6.019156 CGCTGCTGGTTTTTATTTTTGAGAAA 60.019 34.615 0.00 0.00 0.00 2.52
912 3941 7.639850 GCTGCTGGTTTTTATTTTTGAGAAAAC 59.360 33.333 0.00 0.00 37.56 2.43
916 3945 9.971744 CTGGTTTTTATTTTTGAGAAAACACTG 57.028 29.630 11.25 3.70 41.40 3.66
918 3947 8.447053 GGTTTTTATTTTTGAGAAAACACTGCA 58.553 29.630 11.25 0.00 41.40 4.41
919 3948 9.476761 GTTTTTATTTTTGAGAAAACACTGCAG 57.523 29.630 13.48 13.48 40.12 4.41
921 3950 4.799564 TTTTTGAGAAAACACTGCAGGT 57.200 36.364 19.93 10.36 30.07 4.00
934 3963 4.869861 ACACTGCAGGTTTTCATTTCAAAC 59.130 37.500 19.93 0.00 33.98 2.93
938 3967 7.385752 CACTGCAGGTTTTCATTTCAAACATAT 59.614 33.333 19.93 0.00 36.07 1.78
940 3969 9.590451 CTGCAGGTTTTCATTTCAAACATATAT 57.410 29.630 5.57 0.00 36.07 0.86
941 3970 9.368674 TGCAGGTTTTCATTTCAAACATATATG 57.631 29.630 11.29 11.29 36.07 1.78
942 3971 8.330302 GCAGGTTTTCATTTCAAACATATATGC 58.670 33.333 12.79 0.00 36.07 3.14
943 3972 8.819974 CAGGTTTTCATTTCAAACATATATGCC 58.180 33.333 12.79 0.94 36.07 4.40
945 3974 7.226523 GGTTTTCATTTCAAACATATATGCCCC 59.773 37.037 12.79 0.00 36.07 5.80
946 3975 7.673641 TTTCATTTCAAACATATATGCCCCT 57.326 32.000 12.79 0.00 0.00 4.79
986 4110 8.925161 AATATATAGGAGTACTACGACGAGAC 57.075 38.462 0.00 0.00 33.70 3.36
987 4111 4.935352 ATAGGAGTACTACGACGAGACT 57.065 45.455 0.00 0.00 33.70 3.24
1000 4124 5.522456 ACGACGAGACTGTGTTGTTATTAA 58.478 37.500 0.00 0.00 28.19 1.40
1008 4132 9.543018 GAGACTGTGTTGTTATTAAGCAAATAC 57.457 33.333 0.00 0.00 29.54 1.89
1009 4133 9.284968 AGACTGTGTTGTTATTAAGCAAATACT 57.715 29.630 0.00 0.00 29.54 2.12
1010 4134 9.543018 GACTGTGTTGTTATTAAGCAAATACTC 57.457 33.333 0.00 0.00 29.54 2.59
1011 4135 8.512138 ACTGTGTTGTTATTAAGCAAATACTCC 58.488 33.333 0.00 0.00 29.54 3.85
1012 4136 8.397575 TGTGTTGTTATTAAGCAAATACTCCA 57.602 30.769 0.00 0.00 29.54 3.86
1013 4137 9.019656 TGTGTTGTTATTAAGCAAATACTCCAT 57.980 29.630 0.00 0.00 29.54 3.41
1014 4138 9.503427 GTGTTGTTATTAAGCAAATACTCCATC 57.497 33.333 0.00 0.00 29.54 3.51
1015 4139 8.682710 TGTTGTTATTAAGCAAATACTCCATCC 58.317 33.333 0.00 0.00 29.54 3.51
1016 4140 7.490962 TGTTATTAAGCAAATACTCCATCCG 57.509 36.000 0.00 0.00 29.54 4.18
1017 4141 7.051623 TGTTATTAAGCAAATACTCCATCCGT 58.948 34.615 0.00 0.00 29.54 4.69
1018 4142 7.225931 TGTTATTAAGCAAATACTCCATCCGTC 59.774 37.037 0.00 0.00 29.54 4.79
1019 4143 2.622064 AGCAAATACTCCATCCGTCC 57.378 50.000 0.00 0.00 0.00 4.79
1020 4144 1.202533 AGCAAATACTCCATCCGTCCG 60.203 52.381 0.00 0.00 0.00 4.79
1021 4145 1.202486 GCAAATACTCCATCCGTCCGA 60.202 52.381 0.00 0.00 0.00 4.55
1022 4146 2.548067 GCAAATACTCCATCCGTCCGAT 60.548 50.000 0.00 0.00 0.00 4.18
1023 4147 3.059884 CAAATACTCCATCCGTCCGATG 58.940 50.000 0.00 0.00 46.95 3.84
1032 4156 0.387929 TCCGTCCGATGATGTAAGGC 59.612 55.000 0.00 0.00 0.00 4.35
1033 4157 0.939577 CCGTCCGATGATGTAAGGCG 60.940 60.000 0.00 0.00 0.00 5.52
1034 4158 0.248907 CGTCCGATGATGTAAGGCGT 60.249 55.000 0.00 0.00 0.00 5.68
1035 4159 1.801395 CGTCCGATGATGTAAGGCGTT 60.801 52.381 0.00 0.00 0.00 4.84
1036 4160 2.277084 GTCCGATGATGTAAGGCGTTT 58.723 47.619 0.00 0.00 0.00 3.60
1037 4161 2.676342 GTCCGATGATGTAAGGCGTTTT 59.324 45.455 0.00 0.00 0.00 2.43
1038 4162 3.126343 GTCCGATGATGTAAGGCGTTTTT 59.874 43.478 0.00 0.00 0.00 1.94
1039 4163 3.126171 TCCGATGATGTAAGGCGTTTTTG 59.874 43.478 0.00 0.00 0.00 2.44
1040 4164 3.126171 CCGATGATGTAAGGCGTTTTTGA 59.874 43.478 0.00 0.00 0.00 2.69
1041 4165 4.088648 CGATGATGTAAGGCGTTTTTGAC 58.911 43.478 0.00 0.00 0.00 3.18
1042 4166 4.142902 CGATGATGTAAGGCGTTTTTGACT 60.143 41.667 0.00 0.00 0.00 3.41
1043 4167 4.742438 TGATGTAAGGCGTTTTTGACTC 57.258 40.909 0.00 0.00 0.00 3.36
1044 4168 4.130857 TGATGTAAGGCGTTTTTGACTCA 58.869 39.130 0.00 0.00 0.00 3.41
1045 4169 4.759693 TGATGTAAGGCGTTTTTGACTCAT 59.240 37.500 0.00 0.00 0.00 2.90
1046 4170 5.935206 TGATGTAAGGCGTTTTTGACTCATA 59.065 36.000 0.00 0.00 0.00 2.15
1047 4171 5.600908 TGTAAGGCGTTTTTGACTCATAC 57.399 39.130 0.00 0.00 0.00 2.39
1048 4172 5.057819 TGTAAGGCGTTTTTGACTCATACA 58.942 37.500 0.00 0.00 0.00 2.29
1049 4173 5.703592 TGTAAGGCGTTTTTGACTCATACAT 59.296 36.000 0.00 0.00 0.00 2.29
1050 4174 5.705609 AAGGCGTTTTTGACTCATACATT 57.294 34.783 0.00 0.00 0.00 2.71
1051 4175 6.811253 AAGGCGTTTTTGACTCATACATTA 57.189 33.333 0.00 0.00 0.00 1.90
1052 4176 7.391148 AAGGCGTTTTTGACTCATACATTAT 57.609 32.000 0.00 0.00 0.00 1.28
1053 4177 6.785191 AGGCGTTTTTGACTCATACATTATG 58.215 36.000 0.00 0.00 37.52 1.90
1054 4178 6.597672 AGGCGTTTTTGACTCATACATTATGA 59.402 34.615 0.00 0.00 42.56 2.15
1065 4189 6.907853 TCATACATTATGAGACAGAGGGAG 57.092 41.667 0.00 0.00 40.09 4.30
1066 4190 6.377080 TCATACATTATGAGACAGAGGGAGT 58.623 40.000 0.00 0.00 40.09 3.85
1067 4191 7.526918 TCATACATTATGAGACAGAGGGAGTA 58.473 38.462 0.00 0.00 40.09 2.59
1120 4244 2.975732 TTGTTGGCTTGTTGCATTCA 57.024 40.000 0.00 0.00 45.15 2.57
1184 4311 2.224314 GCAACAAACTCCACTGCTACTC 59.776 50.000 0.00 0.00 0.00 2.59
1207 4340 2.942804 TGGAGACATTTGCACAGGAAA 58.057 42.857 0.00 0.00 33.40 3.13
1225 4367 7.278424 CACAGGAAAAGAAATGAAAATGTGTGT 59.722 33.333 0.00 0.00 31.92 3.72
1257 4399 0.179225 GCACGTAAGGCACATTCACG 60.179 55.000 0.00 0.00 46.39 4.35
1320 4468 1.940957 ACCAGAGACCCTCCCTAATCT 59.059 52.381 0.00 0.00 0.00 2.40
1329 4477 8.019652 AGAGACCCTCCCTAATCTGTAATATTT 58.980 37.037 0.00 0.00 0.00 1.40
1331 4479 6.543735 ACCCTCCCTAATCTGTAATATTTGC 58.456 40.000 0.00 0.00 0.00 3.68
1333 4481 7.177878 CCCTCCCTAATCTGTAATATTTGCAT 58.822 38.462 0.00 0.00 0.00 3.96
1335 4483 8.517878 CCTCCCTAATCTGTAATATTTGCATTG 58.482 37.037 0.00 0.00 0.00 2.82
1403 4559 1.035139 GCTAACCAATGGCCCATCTG 58.965 55.000 0.00 0.00 0.00 2.90
1442 4598 0.171455 GCACACCAACAAAACCGACA 59.829 50.000 0.00 0.00 0.00 4.35
1482 4638 2.510238 GCCACTGGACGCTAGCTG 60.510 66.667 13.93 9.03 0.00 4.24
1483 4639 2.510238 CCACTGGACGCTAGCTGC 60.510 66.667 13.93 5.97 38.57 5.25
1505 4672 2.912542 CCCATCCTCCGCTCGCTA 60.913 66.667 0.00 0.00 0.00 4.26
1783 4964 1.228862 GCAAGGGGAAGAAGGGCAA 60.229 57.895 0.00 0.00 0.00 4.52
1794 4975 1.533994 AAGGGCAACAAGAAGGGGC 60.534 57.895 0.00 0.00 39.74 5.80
1796 4977 2.997315 GGCAACAAGAAGGGGCCC 60.997 66.667 17.12 17.12 38.70 5.80
2094 5281 1.720694 GGAGAGAGACGAGAAGGCGG 61.721 65.000 0.00 0.00 35.12 6.13
2095 5282 0.745128 GAGAGAGACGAGAAGGCGGA 60.745 60.000 0.00 0.00 35.12 5.54
2096 5283 1.027792 AGAGAGACGAGAAGGCGGAC 61.028 60.000 0.00 0.00 35.12 4.79
2099 5286 2.100603 GACGAGAAGGCGGACGAG 59.899 66.667 0.00 0.00 35.12 4.18
2134 5321 3.003173 TGGCACGGAGGAGGAAGG 61.003 66.667 0.00 0.00 0.00 3.46
2173 5360 2.179517 GGAGCTCGTGTCGTCAGG 59.820 66.667 7.83 0.00 0.00 3.86
2305 5495 2.061578 TCCAGGAAGCGGCCGATTA 61.062 57.895 31.00 10.54 0.00 1.75
2372 5562 2.106938 CGCAAGCCGGAGATGCTA 59.893 61.111 19.81 0.00 38.34 3.49
2373 5563 1.301244 CGCAAGCCGGAGATGCTAT 60.301 57.895 19.81 0.00 38.34 2.97
2374 5564 1.287730 CGCAAGCCGGAGATGCTATC 61.288 60.000 19.81 0.00 38.34 2.08
2375 5565 0.250038 GCAAGCCGGAGATGCTATCA 60.250 55.000 5.05 0.00 38.34 2.15
2376 5566 1.506493 CAAGCCGGAGATGCTATCAC 58.494 55.000 5.05 0.00 38.34 3.06
2377 5567 0.394565 AAGCCGGAGATGCTATCACC 59.605 55.000 5.05 0.00 38.34 4.02
2378 5568 0.470833 AGCCGGAGATGCTATCACCT 60.471 55.000 5.05 0.00 37.81 4.00
2379 5569 0.394565 GCCGGAGATGCTATCACCTT 59.605 55.000 5.05 0.00 37.81 3.50
2380 5570 1.875576 GCCGGAGATGCTATCACCTTG 60.876 57.143 5.05 4.20 37.81 3.61
2381 5571 1.270518 CCGGAGATGCTATCACCTTGG 60.271 57.143 0.00 0.00 37.81 3.61
2382 5572 1.270518 CGGAGATGCTATCACCTTGGG 60.271 57.143 9.59 0.00 37.81 4.12
2383 5573 1.544314 GGAGATGCTATCACCTTGGGC 60.544 57.143 5.71 0.00 37.11 5.36
2384 5574 0.107456 AGATGCTATCACCTTGGGCG 59.893 55.000 0.00 0.00 0.00 6.13
2385 5575 0.179045 GATGCTATCACCTTGGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
2386 5576 0.179045 ATGCTATCACCTTGGGCGTC 60.179 55.000 0.00 0.00 0.00 5.19
2387 5577 1.264749 TGCTATCACCTTGGGCGTCT 61.265 55.000 0.00 0.00 0.00 4.18
2388 5578 0.530870 GCTATCACCTTGGGCGTCTC 60.531 60.000 0.00 0.00 0.00 3.36
2389 5579 0.105039 CTATCACCTTGGGCGTCTCC 59.895 60.000 0.00 0.00 0.00 3.71
2390 5580 1.672854 TATCACCTTGGGCGTCTCCG 61.673 60.000 0.00 0.00 34.94 4.63
2391 5581 4.003788 CACCTTGGGCGTCTCCGT 62.004 66.667 0.00 0.00 36.15 4.69
2392 5582 3.692406 ACCTTGGGCGTCTCCGTC 61.692 66.667 0.00 0.00 38.17 4.79
2393 5583 3.382832 CCTTGGGCGTCTCCGTCT 61.383 66.667 0.00 0.00 39.11 4.18
2394 5584 2.182030 CTTGGGCGTCTCCGTCTC 59.818 66.667 0.00 0.00 39.11 3.36
2395 5585 3.358076 CTTGGGCGTCTCCGTCTCC 62.358 68.421 0.00 0.00 39.11 3.71
2396 5586 4.671590 TGGGCGTCTCCGTCTCCA 62.672 66.667 0.00 0.00 39.11 3.86
2397 5587 4.131088 GGGCGTCTCCGTCTCCAC 62.131 72.222 0.00 0.00 39.11 4.02
2398 5588 4.477975 GGCGTCTCCGTCTCCACG 62.478 72.222 0.00 0.00 46.29 4.94
2400 5590 3.733960 CGTCTCCGTCTCCACGCA 61.734 66.667 0.00 0.00 45.29 5.24
2401 5591 2.649034 GTCTCCGTCTCCACGCAA 59.351 61.111 0.00 0.00 45.29 4.85
2402 5592 1.444553 GTCTCCGTCTCCACGCAAG 60.445 63.158 0.00 0.00 45.29 4.01
2403 5593 2.811317 CTCCGTCTCCACGCAAGC 60.811 66.667 0.00 0.00 45.29 4.01
2404 5594 4.373116 TCCGTCTCCACGCAAGCC 62.373 66.667 0.00 0.00 45.29 4.35
2407 5597 4.373116 GTCTCCACGCAAGCCGGA 62.373 66.667 5.05 0.00 42.52 5.14
2412 5602 4.465512 CACGCAAGCCGGACATGC 62.466 66.667 5.05 11.33 42.52 4.06
2414 5604 2.511373 CGCAAGCCGGACATGCTA 60.511 61.111 19.81 0.00 40.85 3.49
2429 5619 1.264749 TGCTATCACCTTGGGCGTCT 61.265 55.000 0.00 0.00 0.00 4.18
2432 5622 1.672854 TATCACCTTGGGCGTCTCCG 61.673 60.000 0.00 0.00 34.94 4.63
2438 5628 4.671590 TGGGCGTCTCCGTCTCCA 62.672 66.667 0.00 0.00 39.11 3.86
2553 5743 2.034066 ACATGGTGGCGGTGGAAG 59.966 61.111 0.00 0.00 0.00 3.46
2622 5812 4.749245 GAGGAAAAGATGCTCGAACAAA 57.251 40.909 0.00 0.00 36.73 2.83
2874 6095 1.535833 CGGTCACTGAGTGAGTAGGT 58.464 55.000 16.76 0.00 43.57 3.08
2875 6096 1.200252 CGGTCACTGAGTGAGTAGGTG 59.800 57.143 16.76 0.00 43.57 4.00
2876 6097 1.546476 GGTCACTGAGTGAGTAGGTGG 59.454 57.143 16.76 0.00 43.57 4.61
2877 6098 1.546476 GTCACTGAGTGAGTAGGTGGG 59.454 57.143 16.76 0.00 43.57 4.61
2878 6099 0.898320 CACTGAGTGAGTAGGTGGGG 59.102 60.000 6.79 0.00 35.23 4.96
2879 6100 0.784495 ACTGAGTGAGTAGGTGGGGA 59.216 55.000 0.00 0.00 30.86 4.81
2880 6101 1.187087 CTGAGTGAGTAGGTGGGGAC 58.813 60.000 0.00 0.00 0.00 4.46
2881 6102 4.823339 ACTGAGTGAGTAGGTGGGGACC 62.823 59.091 0.00 0.00 41.34 4.46
2969 6194 2.294979 CGGTAAAGCTGTAATTCCCCC 58.705 52.381 0.00 0.00 0.00 5.40
2994 6219 3.136763 CTCATTTCTCCGTCCATCCATG 58.863 50.000 0.00 0.00 0.00 3.66
3066 6314 1.404717 CCACTAGCACTGCCACTACTG 60.405 57.143 0.00 0.00 0.00 2.74
3122 6388 5.681437 GCGTCTGTTAATCCAACCATCTCTA 60.681 44.000 0.00 0.00 36.20 2.43
3178 6450 7.334421 CCAATAATCTGGCATAGTACATGTACC 59.666 40.741 28.29 15.78 36.75 3.34
3179 6451 5.887214 AATCTGGCATAGTACATGTACCA 57.113 39.130 28.29 18.43 36.75 3.25
3180 6452 4.937201 TCTGGCATAGTACATGTACCAG 57.063 45.455 28.29 25.83 36.75 4.00
3247 6519 3.119245 CCATGAATGAGCTTTGTCCTTGG 60.119 47.826 0.00 0.00 0.00 3.61
3251 6523 4.648762 TGAATGAGCTTTGTCCTTGGAAAA 59.351 37.500 0.00 0.00 0.00 2.29
3252 6524 4.590850 ATGAGCTTTGTCCTTGGAAAAC 57.409 40.909 0.00 0.00 0.00 2.43
3308 6583 1.616865 GTGCCTCCCAACTTTTTACCC 59.383 52.381 0.00 0.00 0.00 3.69
3455 6748 1.300971 TTGCAGCAGCCATCTCGTTC 61.301 55.000 0.00 0.00 41.13 3.95
3538 6831 1.064463 TCTGATCCAATCCAAGCCACC 60.064 52.381 0.00 0.00 0.00 4.61
3552 6845 3.582714 AGCCACCTTACGTTACACTAC 57.417 47.619 0.00 0.00 0.00 2.73
3553 6846 2.892852 AGCCACCTTACGTTACACTACA 59.107 45.455 0.00 0.00 0.00 2.74
3554 6847 3.512724 AGCCACCTTACGTTACACTACAT 59.487 43.478 0.00 0.00 0.00 2.29
3569 6870 4.242475 CACTACATTTACACGAGAAGCCA 58.758 43.478 0.00 0.00 0.00 4.75
3592 6900 1.338769 GCTCTGAACCAACCACGGTAT 60.339 52.381 0.00 0.00 38.76 2.73
3593 6901 2.093869 GCTCTGAACCAACCACGGTATA 60.094 50.000 0.00 0.00 38.76 1.47
3594 6902 3.782046 CTCTGAACCAACCACGGTATAG 58.218 50.000 0.00 0.00 38.76 1.31
3595 6903 2.498481 TCTGAACCAACCACGGTATAGG 59.502 50.000 0.00 0.00 38.76 2.57
3598 6906 3.327172 TGAACCAACCACGGTATAGGAAA 59.673 43.478 8.72 0.00 38.76 3.13
3600 6908 3.946606 ACCAACCACGGTATAGGAAAAG 58.053 45.455 8.72 0.00 37.57 2.27
3620 6928 3.083386 AAAAAGGATCGGCGGGGA 58.917 55.556 7.21 0.00 0.00 4.81
3621 6929 1.381076 AAAAAGGATCGGCGGGGAA 59.619 52.632 7.21 0.00 0.00 3.97
3622 6930 0.251430 AAAAAGGATCGGCGGGGAAA 60.251 50.000 7.21 0.00 0.00 3.13
3623 6931 0.251430 AAAAGGATCGGCGGGGAAAA 60.251 50.000 7.21 0.00 0.00 2.29
3624 6932 0.251430 AAAGGATCGGCGGGGAAAAA 60.251 50.000 7.21 0.00 0.00 1.94
3664 6974 4.766891 GGAATTGATGAGGTTTGACTTGGA 59.233 41.667 0.00 0.00 0.00 3.53
3797 7110 4.962362 TCAGTGGGTGTGTATGTATGAGAT 59.038 41.667 0.00 0.00 0.00 2.75
3855 7168 4.011698 TGTATCGTACTAGTGTGCTCCAA 58.988 43.478 5.39 0.00 0.00 3.53
3910 7223 4.274705 GCTGTCATCTCGAGATCTACAAGA 59.725 45.833 27.61 18.78 31.20 3.02
3911 7224 5.743026 TGTCATCTCGAGATCTACAAGAC 57.257 43.478 26.58 25.29 31.21 3.01
3912 7225 5.186198 TGTCATCTCGAGATCTACAAGACA 58.814 41.667 27.21 27.21 31.73 3.41
3913 7226 5.648092 TGTCATCTCGAGATCTACAAGACAA 59.352 40.000 28.10 17.85 31.45 3.18
3916 7229 5.553290 TCTCGAGATCTACAAGACAAGTG 57.447 43.478 12.08 0.00 0.00 3.16
3917 7230 4.098055 TCGAGATCTACAAGACAAGTGC 57.902 45.455 0.00 0.00 0.00 4.40
3918 7231 3.759086 TCGAGATCTACAAGACAAGTGCT 59.241 43.478 0.00 0.00 0.00 4.40
3919 7232 3.856521 CGAGATCTACAAGACAAGTGCTG 59.143 47.826 0.00 0.00 0.00 4.41
3920 7233 3.594134 AGATCTACAAGACAAGTGCTGC 58.406 45.455 0.00 0.00 0.00 5.25
3924 7237 2.267174 ACAAGACAAGTGCTGCTCAT 57.733 45.000 0.00 0.00 0.00 2.90
3926 7239 1.199327 CAAGACAAGTGCTGCTCATGG 59.801 52.381 11.00 0.05 0.00 3.66
3927 7240 0.959372 AGACAAGTGCTGCTCATGGC 60.959 55.000 11.00 8.10 42.22 4.40
3933 7246 2.279717 GCTGCTCATGGCGATCGA 60.280 61.111 21.57 0.00 45.43 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.159282 TCTAAGATCGGTTTGCGTCTCC 60.159 50.000 0.00 0.00 0.00 3.71
1 2 3.146618 TCTAAGATCGGTTTGCGTCTC 57.853 47.619 0.00 0.00 0.00 3.36
2 3 3.707793 GATCTAAGATCGGTTTGCGTCT 58.292 45.455 0.00 0.00 0.00 4.18
3 4 2.468040 CGATCTAAGATCGGTTTGCGTC 59.532 50.000 0.00 0.00 37.84 5.19
12 13 5.348986 TCCTGTTTTTCCGATCTAAGATCG 58.651 41.667 0.07 0.07 40.86 3.69
13 14 7.611213 TTTCCTGTTTTTCCGATCTAAGATC 57.389 36.000 0.00 0.00 0.00 2.75
14 15 7.996098 TTTTCCTGTTTTTCCGATCTAAGAT 57.004 32.000 0.00 0.00 0.00 2.40
15 16 7.811117 TTTTTCCTGTTTTTCCGATCTAAGA 57.189 32.000 0.00 0.00 0.00 2.10
39 40 5.163854 CGCCAGTTATCTTGATCGACTTTTT 60.164 40.000 0.00 0.00 0.00 1.94
40 41 4.330074 CGCCAGTTATCTTGATCGACTTTT 59.670 41.667 0.00 0.00 0.00 2.27
41 42 3.865745 CGCCAGTTATCTTGATCGACTTT 59.134 43.478 0.00 0.00 0.00 2.66
42 43 3.448686 CGCCAGTTATCTTGATCGACTT 58.551 45.455 0.00 0.00 0.00 3.01
43 44 2.223829 CCGCCAGTTATCTTGATCGACT 60.224 50.000 0.00 0.00 0.00 4.18
44 45 2.128035 CCGCCAGTTATCTTGATCGAC 58.872 52.381 0.00 0.00 0.00 4.20
45 46 1.068588 CCCGCCAGTTATCTTGATCGA 59.931 52.381 0.00 0.00 0.00 3.59
46 47 1.068588 TCCCGCCAGTTATCTTGATCG 59.931 52.381 0.00 0.00 0.00 3.69
47 48 2.365617 TCTCCCGCCAGTTATCTTGATC 59.634 50.000 0.00 0.00 0.00 2.92
48 49 2.366916 CTCTCCCGCCAGTTATCTTGAT 59.633 50.000 0.00 0.00 0.00 2.57
49 50 1.757118 CTCTCCCGCCAGTTATCTTGA 59.243 52.381 0.00 0.00 0.00 3.02
50 51 1.757118 TCTCTCCCGCCAGTTATCTTG 59.243 52.381 0.00 0.00 0.00 3.02
51 52 2.035632 CTCTCTCCCGCCAGTTATCTT 58.964 52.381 0.00 0.00 0.00 2.40
52 53 1.215673 TCTCTCTCCCGCCAGTTATCT 59.784 52.381 0.00 0.00 0.00 1.98
53 54 1.693627 TCTCTCTCCCGCCAGTTATC 58.306 55.000 0.00 0.00 0.00 1.75
54 55 2.160721 TTCTCTCTCCCGCCAGTTAT 57.839 50.000 0.00 0.00 0.00 1.89
55 56 1.933021 TTTCTCTCTCCCGCCAGTTA 58.067 50.000 0.00 0.00 0.00 2.24
56 57 1.056660 TTTTCTCTCTCCCGCCAGTT 58.943 50.000 0.00 0.00 0.00 3.16
57 58 1.002544 CTTTTTCTCTCTCCCGCCAGT 59.997 52.381 0.00 0.00 0.00 4.00
58 59 1.731720 CTTTTTCTCTCTCCCGCCAG 58.268 55.000 0.00 0.00 0.00 4.85
59 60 0.321653 GCTTTTTCTCTCTCCCGCCA 60.322 55.000 0.00 0.00 0.00 5.69
60 61 1.027255 GGCTTTTTCTCTCTCCCGCC 61.027 60.000 0.00 0.00 0.00 6.13
61 62 1.362406 CGGCTTTTTCTCTCTCCCGC 61.362 60.000 0.00 0.00 0.00 6.13
62 63 0.246635 TCGGCTTTTTCTCTCTCCCG 59.753 55.000 0.00 0.00 35.83 5.14
63 64 2.351455 CTTCGGCTTTTTCTCTCTCCC 58.649 52.381 0.00 0.00 0.00 4.30
64 65 1.735018 GCTTCGGCTTTTTCTCTCTCC 59.265 52.381 0.00 0.00 38.08 3.71
65 66 2.417719 TGCTTCGGCTTTTTCTCTCTC 58.582 47.619 0.00 0.00 42.37 3.20
66 67 2.550830 TGCTTCGGCTTTTTCTCTCT 57.449 45.000 0.00 0.00 42.37 3.10
67 68 2.808543 TCTTGCTTCGGCTTTTTCTCTC 59.191 45.455 0.00 0.00 42.37 3.20
68 69 2.810852 CTCTTGCTTCGGCTTTTTCTCT 59.189 45.455 0.00 0.00 42.37 3.10
69 70 2.550180 ACTCTTGCTTCGGCTTTTTCTC 59.450 45.455 0.00 0.00 42.37 2.87
70 71 2.576615 ACTCTTGCTTCGGCTTTTTCT 58.423 42.857 0.00 0.00 42.37 2.52
71 72 3.300857 GAACTCTTGCTTCGGCTTTTTC 58.699 45.455 0.00 0.00 42.37 2.29
72 73 2.287009 CGAACTCTTGCTTCGGCTTTTT 60.287 45.455 0.00 0.00 42.37 1.94
73 74 1.264288 CGAACTCTTGCTTCGGCTTTT 59.736 47.619 0.00 0.00 42.37 2.27
74 75 0.868406 CGAACTCTTGCTTCGGCTTT 59.132 50.000 0.00 0.00 42.37 3.51
75 76 2.533318 CGAACTCTTGCTTCGGCTT 58.467 52.632 0.00 0.00 42.37 4.35
76 77 4.268687 CGAACTCTTGCTTCGGCT 57.731 55.556 0.00 0.00 42.37 5.52
79 80 1.508632 TTTCCCGAACTCTTGCTTCG 58.491 50.000 0.00 0.00 40.19 3.79
80 81 3.564225 TCTTTTTCCCGAACTCTTGCTTC 59.436 43.478 0.00 0.00 0.00 3.86
81 82 3.315470 GTCTTTTTCCCGAACTCTTGCTT 59.685 43.478 0.00 0.00 0.00 3.91
82 83 2.879026 GTCTTTTTCCCGAACTCTTGCT 59.121 45.455 0.00 0.00 0.00 3.91
83 84 2.879026 AGTCTTTTTCCCGAACTCTTGC 59.121 45.455 0.00 0.00 0.00 4.01
84 85 4.381411 AGAGTCTTTTTCCCGAACTCTTG 58.619 43.478 0.00 0.00 29.93 3.02
85 86 4.691326 AGAGTCTTTTTCCCGAACTCTT 57.309 40.909 0.00 0.00 29.93 2.85
86 87 4.691326 AAGAGTCTTTTTCCCGAACTCT 57.309 40.909 0.00 0.00 34.95 3.24
87 88 5.408909 CCTAAAGAGTCTTTTTCCCGAACTC 59.591 44.000 22.66 0.00 0.00 3.01
88 89 5.071384 TCCTAAAGAGTCTTTTTCCCGAACT 59.929 40.000 22.66 0.00 0.00 3.01
89 90 5.178996 GTCCTAAAGAGTCTTTTTCCCGAAC 59.821 44.000 22.66 8.72 0.00 3.95
90 91 5.163280 TGTCCTAAAGAGTCTTTTTCCCGAA 60.163 40.000 22.66 2.85 0.00 4.30
91 92 4.345837 TGTCCTAAAGAGTCTTTTTCCCGA 59.654 41.667 22.66 8.99 0.00 5.14
92 93 4.638304 TGTCCTAAAGAGTCTTTTTCCCG 58.362 43.478 22.66 7.01 0.00 5.14
93 94 4.456222 GCTGTCCTAAAGAGTCTTTTTCCC 59.544 45.833 22.66 9.98 0.00 3.97
94 95 4.456222 GGCTGTCCTAAAGAGTCTTTTTCC 59.544 45.833 22.66 9.66 0.00 3.13
95 96 4.152580 CGGCTGTCCTAAAGAGTCTTTTTC 59.847 45.833 22.66 11.36 0.00 2.29
96 97 4.065789 CGGCTGTCCTAAAGAGTCTTTTT 58.934 43.478 22.66 2.80 0.00 1.94
97 98 3.557264 CCGGCTGTCCTAAAGAGTCTTTT 60.557 47.826 22.66 7.93 0.00 2.27
98 99 2.028020 CCGGCTGTCCTAAAGAGTCTTT 60.028 50.000 21.35 21.35 0.00 2.52
99 100 1.550976 CCGGCTGTCCTAAAGAGTCTT 59.449 52.381 0.00 0.00 0.00 3.01
100 101 1.187087 CCGGCTGTCCTAAAGAGTCT 58.813 55.000 0.00 0.00 0.00 3.24
101 102 0.896226 ACCGGCTGTCCTAAAGAGTC 59.104 55.000 0.00 0.00 0.00 3.36
102 103 0.896226 GACCGGCTGTCCTAAAGAGT 59.104 55.000 0.00 0.00 38.09 3.24
103 104 0.895530 TGACCGGCTGTCCTAAAGAG 59.104 55.000 0.00 0.00 43.78 2.85
104 105 1.275291 CTTGACCGGCTGTCCTAAAGA 59.725 52.381 0.00 0.00 43.78 2.52
105 106 1.275291 TCTTGACCGGCTGTCCTAAAG 59.725 52.381 0.00 4.27 43.78 1.85
106 107 1.001633 GTCTTGACCGGCTGTCCTAAA 59.998 52.381 0.00 0.00 43.78 1.85
107 108 0.606604 GTCTTGACCGGCTGTCCTAA 59.393 55.000 0.00 0.00 43.78 2.69
108 109 1.592400 CGTCTTGACCGGCTGTCCTA 61.592 60.000 0.00 0.00 43.78 2.94
109 110 2.932234 CGTCTTGACCGGCTGTCCT 61.932 63.158 0.00 0.00 43.78 3.85
110 111 2.432628 CGTCTTGACCGGCTGTCC 60.433 66.667 0.00 0.00 43.78 4.02
111 112 1.733399 GTCGTCTTGACCGGCTGTC 60.733 63.158 0.00 1.70 42.04 3.51
112 113 2.338984 GTCGTCTTGACCGGCTGT 59.661 61.111 0.00 0.00 42.04 4.40
120 121 2.049802 GTTCGCCGGTCGTCTTGA 60.050 61.111 16.00 0.00 39.67 3.02
121 122 3.467119 CGTTCGCCGGTCGTCTTG 61.467 66.667 16.00 4.02 39.67 3.02
122 123 3.198236 TTCGTTCGCCGGTCGTCTT 62.198 57.895 16.00 0.00 39.67 3.01
123 124 3.663176 TTCGTTCGCCGGTCGTCT 61.663 61.111 16.00 0.00 39.67 4.18
124 125 3.464545 GTTCGTTCGCCGGTCGTC 61.465 66.667 16.00 10.55 39.67 4.20
131 132 2.946346 TACCTGGGGTTCGTTCGCC 61.946 63.158 0.00 8.23 37.09 5.54
132 133 1.739196 GTACCTGGGGTTCGTTCGC 60.739 63.158 0.00 0.00 37.09 4.70
133 134 1.444895 CGTACCTGGGGTTCGTTCG 60.445 63.158 0.00 0.00 40.63 3.95
134 135 1.079612 CCGTACCTGGGGTTCGTTC 60.080 63.158 13.00 0.00 43.23 3.95
135 136 2.586293 CCCGTACCTGGGGTTCGTT 61.586 63.158 13.00 0.00 46.17 3.85
136 137 2.999063 CCCGTACCTGGGGTTCGT 60.999 66.667 13.00 0.00 46.17 3.85
164 165 3.687321 CTCCATGACCGCCACCAGG 62.687 68.421 0.00 0.00 38.23 4.45
165 166 2.124983 CTCCATGACCGCCACCAG 60.125 66.667 0.00 0.00 0.00 4.00
166 167 3.716195 CCTCCATGACCGCCACCA 61.716 66.667 0.00 0.00 0.00 4.17
173 174 4.530857 CGGTCGGCCTCCATGACC 62.531 72.222 14.89 14.89 46.91 4.02
195 196 4.752879 TACACCTGCGCCGCCTTC 62.753 66.667 6.63 0.00 0.00 3.46
196 197 4.760047 CTACACCTGCGCCGCCTT 62.760 66.667 6.63 0.00 0.00 4.35
198 199 4.752879 TTCTACACCTGCGCCGCC 62.753 66.667 6.63 0.00 0.00 6.13
199 200 3.188786 CTTCTACACCTGCGCCGC 61.189 66.667 4.18 0.00 0.00 6.53
200 201 3.188786 GCTTCTACACCTGCGCCG 61.189 66.667 4.18 0.00 0.00 6.46
201 202 3.188786 CGCTTCTACACCTGCGCC 61.189 66.667 4.18 0.00 41.85 6.53
202 203 3.188786 CCGCTTCTACACCTGCGC 61.189 66.667 0.00 0.00 45.97 6.09
203 204 3.188786 GCCGCTTCTACACCTGCG 61.189 66.667 0.00 0.00 46.74 5.18
204 205 3.188786 CGCCGCTTCTACACCTGC 61.189 66.667 0.00 0.00 0.00 4.85
205 206 2.509336 CCGCCGCTTCTACACCTG 60.509 66.667 0.00 0.00 0.00 4.00
206 207 2.995574 ACCGCCGCTTCTACACCT 60.996 61.111 0.00 0.00 0.00 4.00
207 208 2.813908 CACCGCCGCTTCTACACC 60.814 66.667 0.00 0.00 0.00 4.16
208 209 2.813908 CCACCGCCGCTTCTACAC 60.814 66.667 0.00 0.00 0.00 2.90
209 210 4.752879 GCCACCGCCGCTTCTACA 62.753 66.667 0.00 0.00 0.00 2.74
210 211 2.955751 CTAGCCACCGCCGCTTCTAC 62.956 65.000 0.00 0.00 37.79 2.59
211 212 2.756691 TAGCCACCGCCGCTTCTA 60.757 61.111 0.00 0.00 37.79 2.10
212 213 4.148825 CTAGCCACCGCCGCTTCT 62.149 66.667 0.00 0.00 37.79 2.85
216 217 2.653953 TAAATCCTAGCCACCGCCGC 62.654 60.000 0.00 0.00 34.57 6.53
217 218 0.600255 CTAAATCCTAGCCACCGCCG 60.600 60.000 0.00 0.00 34.57 6.46
218 219 0.756903 TCTAAATCCTAGCCACCGCC 59.243 55.000 0.00 0.00 34.57 6.13
219 220 2.210961 GTTCTAAATCCTAGCCACCGC 58.789 52.381 0.00 0.00 0.00 5.68
220 221 2.802057 CGGTTCTAAATCCTAGCCACCG 60.802 54.545 0.00 0.00 39.95 4.94
221 222 2.484947 CCGGTTCTAAATCCTAGCCACC 60.485 54.545 0.00 0.00 0.00 4.61
222 223 2.433239 TCCGGTTCTAAATCCTAGCCAC 59.567 50.000 0.00 0.00 0.00 5.01
223 224 2.754465 TCCGGTTCTAAATCCTAGCCA 58.246 47.619 0.00 0.00 0.00 4.75
224 225 3.832615 TTCCGGTTCTAAATCCTAGCC 57.167 47.619 0.00 0.00 0.00 3.93
225 226 4.767478 AGTTTCCGGTTCTAAATCCTAGC 58.233 43.478 0.00 0.00 0.00 3.42
226 227 6.223351 AGAGTTTCCGGTTCTAAATCCTAG 57.777 41.667 0.00 0.00 0.00 3.02
227 228 6.664816 TGTAGAGTTTCCGGTTCTAAATCCTA 59.335 38.462 0.00 0.00 0.00 2.94
228 229 5.482878 TGTAGAGTTTCCGGTTCTAAATCCT 59.517 40.000 0.00 0.00 0.00 3.24
229 230 5.727434 TGTAGAGTTTCCGGTTCTAAATCC 58.273 41.667 0.00 0.00 0.00 3.01
230 231 6.396450 ACTGTAGAGTTTCCGGTTCTAAATC 58.604 40.000 0.00 1.17 0.00 2.17
231 232 6.210984 AGACTGTAGAGTTTCCGGTTCTAAAT 59.789 38.462 0.00 0.00 30.16 1.40
232 233 5.537674 AGACTGTAGAGTTTCCGGTTCTAAA 59.462 40.000 0.00 0.00 30.16 1.85
233 234 5.075493 AGACTGTAGAGTTTCCGGTTCTAA 58.925 41.667 0.00 0.00 30.16 2.10
234 235 4.660168 AGACTGTAGAGTTTCCGGTTCTA 58.340 43.478 0.00 2.58 30.16 2.10
235 236 3.498334 AGACTGTAGAGTTTCCGGTTCT 58.502 45.455 0.00 3.60 30.16 3.01
236 237 3.367190 GGAGACTGTAGAGTTTCCGGTTC 60.367 52.174 13.09 0.00 42.12 3.62
237 238 2.561858 GGAGACTGTAGAGTTTCCGGTT 59.438 50.000 13.09 0.00 42.12 4.44
238 239 2.169330 GGAGACTGTAGAGTTTCCGGT 58.831 52.381 13.09 0.00 42.12 5.28
239 240 2.943449 GGAGACTGTAGAGTTTCCGG 57.057 55.000 13.09 0.00 42.12 5.14
241 242 1.544691 TGCGGAGACTGTAGAGTTTCC 59.455 52.381 17.22 17.22 45.99 3.13
242 243 3.119459 TCATGCGGAGACTGTAGAGTTTC 60.119 47.826 2.16 2.16 33.42 2.78
243 244 2.826128 TCATGCGGAGACTGTAGAGTTT 59.174 45.455 0.00 0.00 30.16 2.66
244 245 2.164624 GTCATGCGGAGACTGTAGAGTT 59.835 50.000 0.00 0.00 33.29 3.01
245 246 1.746220 GTCATGCGGAGACTGTAGAGT 59.254 52.381 0.00 0.00 33.29 3.24
246 247 1.268285 CGTCATGCGGAGACTGTAGAG 60.268 57.143 2.16 0.00 36.85 2.43
247 248 0.733150 CGTCATGCGGAGACTGTAGA 59.267 55.000 2.16 0.00 36.85 2.59
248 249 0.733150 TCGTCATGCGGAGACTGTAG 59.267 55.000 9.16 0.00 41.72 2.74
249 250 1.333931 GATCGTCATGCGGAGACTGTA 59.666 52.381 9.16 0.00 41.72 2.74
250 251 0.101399 GATCGTCATGCGGAGACTGT 59.899 55.000 9.16 0.00 41.72 3.55
251 252 0.101219 TGATCGTCATGCGGAGACTG 59.899 55.000 9.16 0.00 41.72 3.51
252 253 0.101399 GTGATCGTCATGCGGAGACT 59.899 55.000 9.16 0.00 41.72 3.24
277 278 2.409752 CGTGTGTATATGCGGCGATTTC 60.410 50.000 12.98 0.00 0.00 2.17
290 291 1.938577 AGCGTCGTAGATCGTGTGTAT 59.061 47.619 0.00 0.00 40.67 2.29
370 374 0.457337 AATCGAACGACGGGTGCTAC 60.457 55.000 0.00 0.00 42.82 3.58
377 381 1.693083 GAGGGCAAATCGAACGACGG 61.693 60.000 0.00 0.00 42.82 4.79
378 382 1.011968 TGAGGGCAAATCGAACGACG 61.012 55.000 0.00 0.00 44.09 5.12
383 387 3.280197 TGATGATGAGGGCAAATCGAA 57.720 42.857 0.00 0.00 0.00 3.71
395 399 0.883370 GCTGCCGCTCATGATGATGA 60.883 55.000 0.00 0.00 37.07 2.92
396 400 1.164041 TGCTGCCGCTCATGATGATG 61.164 55.000 0.70 0.00 36.97 3.07
397 401 0.885150 CTGCTGCCGCTCATGATGAT 60.885 55.000 0.70 0.00 36.97 2.45
400 404 2.900838 GCTGCTGCCGCTCATGAT 60.901 61.111 8.89 0.00 36.97 2.45
481 485 2.286833 TCCAACAAAGCTTCTTTCGTCG 59.713 45.455 0.00 0.00 0.00 5.12
506 510 2.485426 TGCTCTGCTTTCCTTGATTTCG 59.515 45.455 0.00 0.00 0.00 3.46
542 546 0.727398 CGCCGTCCCATCTCTTTTTC 59.273 55.000 0.00 0.00 0.00 2.29
570 576 3.200593 CATCCTGCCTGCGACTGC 61.201 66.667 0.00 0.00 43.20 4.40
571 577 2.513204 CCATCCTGCCTGCGACTG 60.513 66.667 0.00 0.00 0.00 3.51
572 578 4.479993 GCCATCCTGCCTGCGACT 62.480 66.667 0.00 0.00 0.00 4.18
586 592 3.393970 CCCCTCTCTGCTTCGCCA 61.394 66.667 0.00 0.00 0.00 5.69
590 596 0.107752 CTCTTGCCCCTCTCTGCTTC 60.108 60.000 0.00 0.00 0.00 3.86
599 605 0.034670 GCACTGAATCTCTTGCCCCT 60.035 55.000 0.00 0.00 0.00 4.79
600 606 0.034670 AGCACTGAATCTCTTGCCCC 60.035 55.000 0.00 0.00 35.47 5.80
643 649 4.008933 AGCGGTGACAGGTGAGGC 62.009 66.667 0.00 0.00 0.00 4.70
719 736 0.687354 TCAGGTTGGAGGAAGAGTGC 59.313 55.000 0.00 0.00 0.00 4.40
735 756 0.977395 ACGAAGGAAGGAAGGGTCAG 59.023 55.000 0.00 0.00 0.00 3.51
740 761 0.537653 GAGGGACGAAGGAAGGAAGG 59.462 60.000 0.00 0.00 0.00 3.46
741 762 0.537653 GGAGGGACGAAGGAAGGAAG 59.462 60.000 0.00 0.00 0.00 3.46
742 763 0.178915 TGGAGGGACGAAGGAAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
743 764 0.903454 GTGGAGGGACGAAGGAAGGA 60.903 60.000 0.00 0.00 0.00 3.36
767 788 0.930726 TCTCTTCCCCTCTCCTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
779 3797 0.256464 TCCGACCTCTCCTCTCTTCC 59.744 60.000 0.00 0.00 0.00 3.46
780 3798 1.675552 CTCCGACCTCTCCTCTCTTC 58.324 60.000 0.00 0.00 0.00 2.87
782 3800 1.919771 CCTCCGACCTCTCCTCTCT 59.080 63.158 0.00 0.00 0.00 3.10
870 3899 1.337260 GCAGCGGTACATGATCTAGGG 60.337 57.143 0.00 0.00 0.00 3.53
890 3919 9.971744 CAGTGTTTTCTCAAAAATAAAAACCAG 57.028 29.630 6.99 0.00 39.63 4.00
894 3923 8.663911 CCTGCAGTGTTTTCTCAAAAATAAAAA 58.336 29.630 13.81 0.00 36.77 1.94
897 3926 6.872920 ACCTGCAGTGTTTTCTCAAAAATAA 58.127 32.000 13.81 0.00 36.77 1.40
898 3927 6.463995 ACCTGCAGTGTTTTCTCAAAAATA 57.536 33.333 13.81 0.00 36.77 1.40
899 3928 5.343307 ACCTGCAGTGTTTTCTCAAAAAT 57.657 34.783 13.81 0.00 36.77 1.82
901 3930 4.799564 AACCTGCAGTGTTTTCTCAAAA 57.200 36.364 13.81 0.00 0.00 2.44
902 3931 4.799564 AAACCTGCAGTGTTTTCTCAAA 57.200 36.364 20.79 0.00 32.17 2.69
903 3932 4.799564 AAAACCTGCAGTGTTTTCTCAA 57.200 36.364 26.78 0.00 40.85 3.02
908 3937 5.486526 TGAAATGAAAACCTGCAGTGTTTT 58.513 33.333 29.91 29.91 45.77 2.43
910 3939 4.734398 TGAAATGAAAACCTGCAGTGTT 57.266 36.364 13.81 13.32 0.00 3.32
912 3941 4.869297 TGTTTGAAATGAAAACCTGCAGTG 59.131 37.500 13.81 6.81 36.82 3.66
916 3945 8.330302 GCATATATGTTTGAAATGAAAACCTGC 58.670 33.333 14.14 0.00 36.82 4.85
918 3947 7.986889 GGGCATATATGTTTGAAATGAAAACCT 59.013 33.333 14.14 0.00 36.82 3.50
919 3948 7.226523 GGGGCATATATGTTTGAAATGAAAACC 59.773 37.037 14.14 1.82 36.82 3.27
921 3950 8.088463 AGGGGCATATATGTTTGAAATGAAAA 57.912 30.769 14.14 0.00 0.00 2.29
982 4106 9.543018 GTATTTGCTTAATAACAACACAGTCTC 57.457 33.333 0.00 0.00 30.70 3.36
986 4110 8.511321 TGGAGTATTTGCTTAATAACAACACAG 58.489 33.333 0.00 0.00 30.70 3.66
987 4111 8.397575 TGGAGTATTTGCTTAATAACAACACA 57.602 30.769 0.00 0.00 30.70 3.72
1000 4124 1.202533 CGGACGGATGGAGTATTTGCT 60.203 52.381 0.00 0.00 0.00 3.91
1012 4136 1.000955 GCCTTACATCATCGGACGGAT 59.999 52.381 0.00 0.00 35.09 4.18
1013 4137 0.387929 GCCTTACATCATCGGACGGA 59.612 55.000 0.00 0.00 0.00 4.69
1014 4138 0.939577 CGCCTTACATCATCGGACGG 60.940 60.000 0.00 0.00 0.00 4.79
1015 4139 0.248907 ACGCCTTACATCATCGGACG 60.249 55.000 0.00 0.00 0.00 4.79
1016 4140 1.935933 AACGCCTTACATCATCGGAC 58.064 50.000 0.00 0.00 0.00 4.79
1017 4141 2.684001 AAACGCCTTACATCATCGGA 57.316 45.000 0.00 0.00 0.00 4.55
1018 4142 3.126171 TCAAAAACGCCTTACATCATCGG 59.874 43.478 0.00 0.00 0.00 4.18
1019 4143 4.088648 GTCAAAAACGCCTTACATCATCG 58.911 43.478 0.00 0.00 0.00 3.84
1020 4144 5.106712 TGAGTCAAAAACGCCTTACATCATC 60.107 40.000 0.00 0.00 0.00 2.92
1021 4145 4.759693 TGAGTCAAAAACGCCTTACATCAT 59.240 37.500 0.00 0.00 0.00 2.45
1022 4146 4.130857 TGAGTCAAAAACGCCTTACATCA 58.869 39.130 0.00 0.00 0.00 3.07
1023 4147 4.742438 TGAGTCAAAAACGCCTTACATC 57.258 40.909 0.00 0.00 0.00 3.06
1024 4148 5.703592 TGTATGAGTCAAAAACGCCTTACAT 59.296 36.000 0.00 0.00 0.00 2.29
1025 4149 5.057819 TGTATGAGTCAAAAACGCCTTACA 58.942 37.500 0.00 0.00 0.00 2.41
1026 4150 5.600908 TGTATGAGTCAAAAACGCCTTAC 57.399 39.130 0.00 0.00 0.00 2.34
1027 4151 6.811253 AATGTATGAGTCAAAAACGCCTTA 57.189 33.333 0.00 0.00 0.00 2.69
1028 4152 5.705609 AATGTATGAGTCAAAAACGCCTT 57.294 34.783 0.00 0.00 0.00 4.35
1029 4153 6.597672 TCATAATGTATGAGTCAAAAACGCCT 59.402 34.615 0.00 0.00 40.09 5.52
1030 4154 6.781138 TCATAATGTATGAGTCAAAAACGCC 58.219 36.000 0.00 0.00 40.09 5.68
1042 4166 6.377080 ACTCCCTCTGTCTCATAATGTATGA 58.623 40.000 0.00 0.00 42.56 2.15
1043 4167 6.662865 ACTCCCTCTGTCTCATAATGTATG 57.337 41.667 0.00 0.00 37.52 2.39
1044 4168 8.964533 ATTACTCCCTCTGTCTCATAATGTAT 57.035 34.615 0.00 0.00 0.00 2.29
1045 4169 8.783660 AATTACTCCCTCTGTCTCATAATGTA 57.216 34.615 0.00 0.00 0.00 2.29
1046 4170 7.682787 AATTACTCCCTCTGTCTCATAATGT 57.317 36.000 0.00 0.00 0.00 2.71
1047 4171 7.659390 GGAAATTACTCCCTCTGTCTCATAATG 59.341 40.741 0.00 0.00 0.00 1.90
1048 4172 7.570607 AGGAAATTACTCCCTCTGTCTCATAAT 59.429 37.037 0.00 0.00 35.95 1.28
1049 4173 6.903534 AGGAAATTACTCCCTCTGTCTCATAA 59.096 38.462 0.00 0.00 35.95 1.90
1050 4174 6.444704 AGGAAATTACTCCCTCTGTCTCATA 58.555 40.000 0.00 0.00 35.95 2.15
1051 4175 5.284582 AGGAAATTACTCCCTCTGTCTCAT 58.715 41.667 0.00 0.00 35.95 2.90
1052 4176 4.689062 AGGAAATTACTCCCTCTGTCTCA 58.311 43.478 0.00 0.00 35.95 3.27
1053 4177 5.270893 GAGGAAATTACTCCCTCTGTCTC 57.729 47.826 0.00 0.00 42.36 3.36
1085 4209 6.889198 AGCCAACAATGACATACAGTACTAT 58.111 36.000 0.00 0.00 0.00 2.12
1086 4210 6.294361 AGCCAACAATGACATACAGTACTA 57.706 37.500 0.00 0.00 0.00 1.82
1088 4212 5.181245 ACAAGCCAACAATGACATACAGTAC 59.819 40.000 0.00 0.00 0.00 2.73
1089 4213 5.312895 ACAAGCCAACAATGACATACAGTA 58.687 37.500 0.00 0.00 0.00 2.74
1090 4214 4.144297 ACAAGCCAACAATGACATACAGT 58.856 39.130 0.00 0.00 0.00 3.55
1091 4215 4.771590 ACAAGCCAACAATGACATACAG 57.228 40.909 0.00 0.00 0.00 2.74
1092 4216 4.795635 GCAACAAGCCAACAATGACATACA 60.796 41.667 0.00 0.00 37.23 2.29
1093 4217 3.674753 GCAACAAGCCAACAATGACATAC 59.325 43.478 0.00 0.00 37.23 2.39
1100 4224 3.132925 GTGAATGCAACAAGCCAACAAT 58.867 40.909 0.00 0.00 44.83 2.71
1120 4244 7.724305 ACAAGTCGAAACTACATTTACATGT 57.276 32.000 2.69 2.69 46.07 3.21
1184 4311 2.821378 TCCTGTGCAAATGTCTCCATTG 59.179 45.455 0.00 0.00 40.42 2.82
1203 4336 6.421405 GCACACACATTTTCATTTCTTTTCC 58.579 36.000 0.00 0.00 0.00 3.13
1207 4340 4.050553 CGGCACACACATTTTCATTTCTT 58.949 39.130 0.00 0.00 0.00 2.52
1257 4399 0.107459 GATTCTCTGGCCCTGTGACC 60.107 60.000 0.00 0.00 0.00 4.02
1335 4483 8.529476 CCCACCAACTATGATTAGTATAGTACC 58.471 40.741 0.00 0.00 39.71 3.34
1356 4507 1.076995 GGCCATTAGTCCACCCACC 60.077 63.158 0.00 0.00 0.00 4.61
1403 4559 1.352156 CGAAGCGGTGGAGCAGTTAC 61.352 60.000 0.00 0.00 40.15 2.50
1426 4582 2.525055 CTGTTGTCGGTTTTGTTGGTG 58.475 47.619 0.00 0.00 0.00 4.17
1442 4598 3.394836 GCTCTCGGCTCCCCTGTT 61.395 66.667 0.00 0.00 38.06 3.16
1482 4638 1.811645 GAGCGGAGGATGGGACTAGC 61.812 65.000 0.00 0.00 0.00 3.42
1483 4639 1.519751 CGAGCGGAGGATGGGACTAG 61.520 65.000 0.00 0.00 0.00 2.57
1505 4672 3.141488 CCGCACGGAGAGGTAGCT 61.141 66.667 2.01 0.00 37.50 3.32
1724 4905 2.432628 GTGACCTTGGGCGACGAG 60.433 66.667 0.00 0.00 0.00 4.18
1952 5139 2.263741 CCTGCTGCTGAACACCCAC 61.264 63.158 8.20 0.00 0.00 4.61
2074 5261 1.027255 CGCCTTCTCGTCTCTCTCCA 61.027 60.000 0.00 0.00 0.00 3.86
2122 5309 4.148825 CGCACCCTTCCTCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
2305 5495 4.175489 CGATCGACTCCACCGCGT 62.175 66.667 10.26 0.00 0.00 6.01
2366 5556 0.179045 ACGCCCAAGGTGATAGCATC 60.179 55.000 0.25 0.00 36.58 3.91
2367 5557 0.179045 GACGCCCAAGGTGATAGCAT 60.179 55.000 0.25 0.00 36.58 3.79
2368 5558 1.220749 GACGCCCAAGGTGATAGCA 59.779 57.895 0.25 0.00 36.58 3.49
2369 5559 0.530870 GAGACGCCCAAGGTGATAGC 60.531 60.000 0.25 0.00 36.58 2.97
2370 5560 0.105039 GGAGACGCCCAAGGTGATAG 59.895 60.000 0.25 0.00 36.58 2.08
2371 5561 2.208527 GGAGACGCCCAAGGTGATA 58.791 57.895 0.25 0.00 36.58 2.15
2372 5562 2.990479 GGAGACGCCCAAGGTGAT 59.010 61.111 0.25 0.00 36.58 3.06
2387 5577 4.373116 GGCTTGCGTGGAGACGGA 62.373 66.667 0.00 0.00 46.20 4.69
2390 5580 4.373116 TCCGGCTTGCGTGGAGAC 62.373 66.667 0.00 0.00 0.00 3.36
2391 5581 4.373116 GTCCGGCTTGCGTGGAGA 62.373 66.667 0.00 0.00 31.04 3.71
2392 5582 3.958147 ATGTCCGGCTTGCGTGGAG 62.958 63.158 0.00 0.00 31.04 3.86
2393 5583 4.015406 ATGTCCGGCTTGCGTGGA 62.015 61.111 0.00 1.84 0.00 4.02
2394 5584 3.803082 CATGTCCGGCTTGCGTGG 61.803 66.667 0.00 0.00 0.00 4.94
2395 5585 4.465512 GCATGTCCGGCTTGCGTG 62.466 66.667 16.65 10.48 38.26 5.34
2398 5588 0.815213 TGATAGCATGTCCGGCTTGC 60.815 55.000 21.13 21.13 45.36 4.01
2399 5589 0.940126 GTGATAGCATGTCCGGCTTG 59.060 55.000 0.00 1.81 42.62 4.01
2400 5590 0.179045 GGTGATAGCATGTCCGGCTT 60.179 55.000 0.00 0.00 42.62 4.35
2401 5591 1.050988 AGGTGATAGCATGTCCGGCT 61.051 55.000 0.00 0.00 45.18 5.52
2402 5592 0.179045 AAGGTGATAGCATGTCCGGC 60.179 55.000 0.00 0.00 0.00 6.13
2403 5593 1.586422 CAAGGTGATAGCATGTCCGG 58.414 55.000 0.00 0.00 0.00 5.14
2404 5594 1.586422 CCAAGGTGATAGCATGTCCG 58.414 55.000 0.00 0.00 0.00 4.79
2405 5595 1.972872 CCCAAGGTGATAGCATGTCC 58.027 55.000 0.00 0.00 0.00 4.02
2406 5596 1.312815 GCCCAAGGTGATAGCATGTC 58.687 55.000 0.00 0.00 0.00 3.06
2407 5597 0.464373 CGCCCAAGGTGATAGCATGT 60.464 55.000 0.00 0.00 34.74 3.21
2412 5602 0.105039 GGAGACGCCCAAGGTGATAG 59.895 60.000 0.25 0.00 36.58 2.08
2414 5604 2.990479 GGAGACGCCCAAGGTGAT 59.010 61.111 0.25 0.00 36.58 3.06
2429 5619 4.373116 GGCTTGCGTGGAGACGGA 62.373 66.667 0.00 0.00 46.20 4.69
2432 5622 4.373116 TCCGGCTTGCGTGGAGAC 62.373 66.667 0.00 0.00 0.00 3.36
2480 5670 2.031919 AACATGTCCGGCTTGCGA 59.968 55.556 0.00 0.00 0.00 5.10
2553 5743 3.479269 CCGCTTCTCGTCGTTGCC 61.479 66.667 0.00 0.00 36.19 4.52
2622 5812 2.733593 GTCGTCGGCTTCGTGCTT 60.734 61.111 0.00 0.00 42.39 3.91
2875 6096 1.762858 GAGACAGCTAGGGGTCCCC 60.763 68.421 20.85 20.85 45.90 4.81
2876 6097 1.762858 GGAGACAGCTAGGGGTCCC 60.763 68.421 0.00 0.00 34.58 4.46
2877 6098 1.762858 GGGAGACAGCTAGGGGTCC 60.763 68.421 0.00 0.00 34.58 4.46
2878 6099 2.128507 CGGGAGACAGCTAGGGGTC 61.129 68.421 0.00 0.00 0.00 4.46
2879 6100 1.578215 TACGGGAGACAGCTAGGGGT 61.578 60.000 0.00 0.00 0.00 4.95
2880 6101 0.178958 ATACGGGAGACAGCTAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
2881 6102 2.161030 GTATACGGGAGACAGCTAGGG 58.839 57.143 0.00 0.00 0.00 3.53
2882 6103 3.143211 AGTATACGGGAGACAGCTAGG 57.857 52.381 0.00 0.00 0.00 3.02
2883 6104 4.897140 ACTAGTATACGGGAGACAGCTAG 58.103 47.826 0.00 0.00 0.00 3.42
2884 6105 4.970860 ACTAGTATACGGGAGACAGCTA 57.029 45.455 0.00 0.00 0.00 3.32
2885 6106 3.860968 ACTAGTATACGGGAGACAGCT 57.139 47.619 0.00 0.00 0.00 4.24
2886 6107 4.640364 ACTACTAGTATACGGGAGACAGC 58.360 47.826 15.00 0.00 0.00 4.40
2891 6112 8.860780 AGGAAAATACTACTAGTATACGGGAG 57.139 38.462 8.84 8.83 40.32 4.30
2969 6194 3.812053 GGATGGACGGAGAAATGAGAATG 59.188 47.826 0.00 0.00 0.00 2.67
2994 6219 5.645067 AGGTACGTAAATCTTTTTACAGGGC 59.355 40.000 0.00 0.00 44.91 5.19
3059 6307 6.311445 CAGTGGTAGATAAACAAGCAGTAGTG 59.689 42.308 0.00 0.00 0.00 2.74
3066 6314 4.324267 ACACCAGTGGTAGATAAACAAGC 58.676 43.478 16.22 0.00 32.11 4.01
3207 6479 6.494893 TCATGGCACTGTTAAATCTACAAC 57.505 37.500 0.00 0.00 0.00 3.32
3247 6519 6.953189 GTGTGCAAGTTGTGTTTAATGTTTTC 59.047 34.615 4.48 0.00 0.00 2.29
3251 6523 4.159506 AGGTGTGCAAGTTGTGTTTAATGT 59.840 37.500 4.48 0.00 0.00 2.71
3252 6524 4.503734 CAGGTGTGCAAGTTGTGTTTAATG 59.496 41.667 4.48 0.00 0.00 1.90
3455 6748 0.027455 CTCGCTGTAGCTCTCACGAG 59.973 60.000 18.51 18.51 40.70 4.18
3538 6831 7.746034 TCTCGTGTAAATGTAGTGTAACGTAAG 59.254 37.037 0.00 0.00 45.86 2.34
3552 6845 2.159653 GCACTGGCTTCTCGTGTAAATG 60.160 50.000 0.00 0.00 36.96 2.32
3553 6846 2.076863 GCACTGGCTTCTCGTGTAAAT 58.923 47.619 0.00 0.00 36.96 1.40
3554 6847 1.508632 GCACTGGCTTCTCGTGTAAA 58.491 50.000 0.00 0.00 36.96 2.01
3569 6870 0.532862 CGTGGTTGGTTCAGAGCACT 60.533 55.000 4.50 0.00 40.94 4.40
3622 6930 7.616935 TCAATTCCTCTGATCCAGCTAATTTTT 59.383 33.333 0.00 0.00 0.00 1.94
3623 6931 7.121382 TCAATTCCTCTGATCCAGCTAATTTT 58.879 34.615 0.00 0.00 0.00 1.82
3624 6932 6.666678 TCAATTCCTCTGATCCAGCTAATTT 58.333 36.000 0.00 0.00 0.00 1.82
3625 6933 6.257994 TCAATTCCTCTGATCCAGCTAATT 57.742 37.500 0.00 0.00 0.00 1.40
3626 6934 5.901413 TCAATTCCTCTGATCCAGCTAAT 57.099 39.130 0.00 0.00 0.00 1.73
3627 6935 5.367644 TCATCAATTCCTCTGATCCAGCTAA 59.632 40.000 0.00 0.00 30.99 3.09
3628 6936 4.903649 TCATCAATTCCTCTGATCCAGCTA 59.096 41.667 0.00 0.00 30.99 3.32
3629 6937 3.715315 TCATCAATTCCTCTGATCCAGCT 59.285 43.478 0.00 0.00 30.99 4.24
3630 6938 4.066490 CTCATCAATTCCTCTGATCCAGC 58.934 47.826 0.00 0.00 30.99 4.85
3631 6939 4.102838 ACCTCATCAATTCCTCTGATCCAG 59.897 45.833 0.00 0.00 30.99 3.86
3664 6974 0.250124 TCGGTTCTCACGCCATGTTT 60.250 50.000 0.00 0.00 0.00 2.83
3797 7110 6.909550 ACAAAAGGTGAACTATTTATGCCA 57.090 33.333 0.00 0.00 0.00 4.92
3855 7168 4.457496 CCTCTCGTGCCGCCACAT 62.457 66.667 0.00 0.00 42.17 3.21
3888 7201 5.295540 TGTCTTGTAGATCTCGAGATGACAG 59.704 44.000 31.88 23.05 34.37 3.51
3910 7223 2.330372 CGCCATGAGCAGCACTTGT 61.330 57.895 0.00 0.00 44.04 3.16
3911 7224 1.374343 ATCGCCATGAGCAGCACTTG 61.374 55.000 0.00 0.00 44.04 3.16
3912 7225 1.077930 ATCGCCATGAGCAGCACTT 60.078 52.632 0.00 0.00 44.04 3.16
3913 7226 1.523258 GATCGCCATGAGCAGCACT 60.523 57.895 0.00 0.00 44.04 4.40
3916 7229 2.279717 TCGATCGCCATGAGCAGC 60.280 61.111 11.09 0.00 44.04 5.25
3917 7230 0.529337 AACTCGATCGCCATGAGCAG 60.529 55.000 11.09 2.20 44.04 4.24
3918 7231 0.108186 AAACTCGATCGCCATGAGCA 60.108 50.000 11.09 0.00 44.04 4.26
3919 7232 1.004504 GAAAACTCGATCGCCATGAGC 60.005 52.381 11.09 0.00 38.52 4.26
3920 7233 2.544685 AGAAAACTCGATCGCCATGAG 58.455 47.619 11.09 4.60 35.85 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.