Multiple sequence alignment - TraesCS1D01G044200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G044200 chr1D 100.000 4271 0 0 1 4271 23003507 23007777 0.000000e+00 7888.0
1 TraesCS1D01G044200 chr1D 80.916 393 38 14 3777 4169 24005884 24006239 4.210000e-70 276.0
2 TraesCS1D01G044200 chr1D 75.844 385 76 9 45 412 106292582 106292966 3.390000e-41 180.0
3 TraesCS1D01G044200 chr1D 77.031 357 47 20 76 413 383170474 383170134 5.680000e-39 172.0
4 TraesCS1D01G044200 chr1D 79.535 215 30 11 3735 3944 298513641 298513846 1.600000e-29 141.0
5 TraesCS1D01G044200 chr1B 92.359 2722 125 33 677 3359 39577239 39579916 0.000000e+00 3797.0
6 TraesCS1D01G044200 chr1B 91.011 534 41 6 1 528 39576615 39577147 0.000000e+00 713.0
7 TraesCS1D01G044200 chr1B 93.671 237 11 4 4036 4271 39580140 39580373 6.790000e-93 351.0
8 TraesCS1D01G044200 chr1B 96.324 136 4 1 3905 4039 39579925 39580060 5.560000e-54 222.0
9 TraesCS1D01G044200 chr1B 75.297 421 82 11 9 412 678205058 678205473 9.430000e-42 182.0
10 TraesCS1D01G044200 chr1B 94.737 57 3 0 513 569 611950448 611950392 5.880000e-14 89.8
11 TraesCS1D01G044200 chr1B 96.970 33 1 0 522 554 555304026 555303994 5.970000e-04 56.5
12 TraesCS1D01G044200 chr1A 91.018 2672 137 37 728 3359 24318935 24321543 0.000000e+00 3509.0
13 TraesCS1D01G044200 chr1A 83.752 517 65 14 1 508 24318429 24318935 5.000000e-129 472.0
14 TraesCS1D01G044200 chr1A 89.474 380 25 7 3905 4271 24321552 24321929 2.330000e-127 466.0
15 TraesCS1D01G044200 chr1A 89.231 65 7 0 506 570 486417495 486417431 9.840000e-12 82.4
16 TraesCS1D01G044200 chr2D 98.795 166 2 0 569 734 304655281 304655116 3.230000e-76 296.0
17 TraesCS1D01G044200 chr2D 75.000 412 79 13 19 413 650950450 650950046 7.340000e-38 169.0
18 TraesCS1D01G044200 chr2D 81.333 75 10 4 417 490 348972917 348972846 1.660000e-04 58.4
19 TraesCS1D01G044200 chr2D 96.970 33 1 0 538 570 211200368 211200336 5.970000e-04 56.5
20 TraesCS1D01G044200 chr7D 98.193 166 3 0 569 734 18809482 18809317 1.500000e-74 291.0
21 TraesCS1D01G044200 chr7D 98.160 163 3 0 569 731 82346272 82346110 6.990000e-73 285.0
22 TraesCS1D01G044200 chr7D 80.460 174 34 0 51 224 562433261 562433434 2.680000e-27 134.0
23 TraesCS1D01G044200 chrUn 97.024 168 5 0 565 732 2572717 2572550 2.510000e-72 283.0
24 TraesCS1D01G044200 chr7B 97.006 167 5 0 565 731 115374031 115373865 9.040000e-72 281.0
25 TraesCS1D01G044200 chr7B 88.158 76 3 3 343 412 742548767 742548842 7.610000e-13 86.1
26 TraesCS1D01G044200 chr6D 97.546 163 4 0 569 731 90890444 90890282 3.250000e-71 279.0
27 TraesCS1D01G044200 chr6D 95.402 174 8 0 569 742 138383807 138383634 1.170000e-70 278.0
28 TraesCS1D01G044200 chr6D 76.794 418 66 23 17 412 387798064 387797656 5.600000e-49 206.0
29 TraesCS1D01G044200 chr6D 75.610 369 57 21 63 413 303446077 303445724 7.400000e-33 152.0
30 TraesCS1D01G044200 chr6B 94.857 175 9 0 558 732 82007520 82007694 1.510000e-69 274.0
31 TraesCS1D01G044200 chr6B 89.706 68 7 0 503 570 471227575 471227642 2.120000e-13 87.9
32 TraesCS1D01G044200 chr6B 94.643 56 3 0 507 562 543853506 543853561 2.120000e-13 87.9
33 TraesCS1D01G044200 chr6B 95.745 47 2 0 516 562 234869371 234869325 4.580000e-10 76.8
34 TraesCS1D01G044200 chr5B 94.857 175 9 0 562 736 467382519 467382693 1.510000e-69 274.0
35 TraesCS1D01G044200 chr5B 75.904 166 26 8 3780 3944 302837084 302837236 5.920000e-09 73.1
36 TraesCS1D01G044200 chr5B 86.207 58 6 2 499 556 146824631 146824576 1.280000e-05 62.1
37 TraesCS1D01G044200 chr6A 78.140 430 61 12 10 412 591940867 591940444 4.270000e-60 243.0
38 TraesCS1D01G044200 chr4B 75.991 429 73 14 7 412 526721432 526721853 1.210000e-45 195.0
39 TraesCS1D01G044200 chr5D 78.623 276 56 3 1 275 520345816 520346089 3.390000e-41 180.0
40 TraesCS1D01G044200 chr5D 89.474 76 2 3 343 412 63608615 63608690 1.640000e-14 91.6
41 TraesCS1D01G044200 chr5D 100.000 30 0 0 421 450 484295740 484295711 5.970000e-04 56.5
42 TraesCS1D01G044200 chr7A 80.000 245 43 6 11 250 686375792 686375549 4.390000e-40 176.0
43 TraesCS1D01G044200 chr7A 81.579 76 9 5 421 495 648570899 648570828 1.660000e-04 58.4
44 TraesCS1D01G044200 chr3D 76.976 291 58 6 64 348 475554066 475553779 1.590000e-34 158.0
45 TraesCS1D01G044200 chr3D 78.673 211 34 8 3735 3944 41211439 41211239 3.470000e-26 130.0
46 TraesCS1D01G044200 chr3D 80.519 77 11 4 421 495 569393127 569393053 5.970000e-04 56.5
47 TraesCS1D01G044200 chr4D 72.854 431 80 24 1 405 75274096 75273677 3.490000e-21 113.0
48 TraesCS1D01G044200 chr2A 77.228 202 30 10 3747 3944 64287542 64287353 2.100000e-18 104.0
49 TraesCS1D01G044200 chr2A 84.000 75 9 3 421 493 82122369 82122442 7.660000e-08 69.4
50 TraesCS1D01G044200 chr2A 100.000 28 0 0 421 448 16627802 16627775 8.000000e-03 52.8
51 TraesCS1D01G044200 chr3A 88.158 76 3 5 343 412 611158180 611158105 7.610000e-13 86.1
52 TraesCS1D01G044200 chr2B 86.567 67 9 0 504 570 133838274 133838340 1.650000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G044200 chr1D 23003507 23007777 4270 False 7888.000000 7888 100.000000 1 4271 1 chr1D.!!$F1 4270
1 TraesCS1D01G044200 chr1B 39576615 39580373 3758 False 1270.750000 3797 93.341250 1 4271 4 chr1B.!!$F2 4270
2 TraesCS1D01G044200 chr1A 24318429 24321929 3500 False 1482.333333 3509 88.081333 1 4271 3 chr1A.!!$F1 4270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 804 1.032657 CACGGATCACCTCGAGTCCT 61.033 60.0 12.31 0.0 0.00 3.85 F
1271 1304 0.319469 GCTCTAGCCGCTCCTTGATC 60.319 60.0 0.00 0.0 34.31 2.92 F
1806 1847 1.118838 AGCTGACCCACATAGAGAGC 58.881 55.0 0.00 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 1834 0.538584 TGTGCAGCTCTCTATGTGGG 59.461 55.0 0.00 0.00 0.00 4.61 R
3068 3121 0.179181 CACGGTCACAAGCATGATGC 60.179 55.0 9.89 9.89 45.46 3.91 R
3802 3861 0.668535 GCAGGGCGTCAGAAAGTTTT 59.331 50.0 0.00 0.00 0.00 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 2.902486 TCTGTGTCTTGCTCAGGAAGAT 59.098 45.455 12.32 0.00 38.75 2.40
231 233 1.676529 GATCTCGTGGGATTCAGTCGA 59.323 52.381 0.00 0.00 0.00 4.20
281 283 2.398498 CAGTCTTCCTTCGTGTGTCTG 58.602 52.381 0.00 0.00 0.00 3.51
313 317 4.998672 ACCCTCGATCTATACTTCTCTTCG 59.001 45.833 0.00 0.00 0.00 3.79
363 370 1.145803 GCCTTAGCACGACGACTTTT 58.854 50.000 0.00 0.00 39.53 2.27
392 399 3.682292 CTACAACAGGCCCGGCTCC 62.682 68.421 9.86 0.00 0.00 4.70
448 456 1.064505 TCGTCGCTAAATGGTCTACGG 59.935 52.381 0.00 0.00 0.00 4.02
457 465 6.220930 GCTAAATGGTCTACGGACATGAATA 58.779 40.000 0.00 0.00 43.77 1.75
461 469 5.258456 TGGTCTACGGACATGAATACTTC 57.742 43.478 0.00 0.00 43.77 3.01
508 517 8.379428 TCATACTGCCATACCATGATAAGTAT 57.621 34.615 0.00 0.00 33.86 2.12
509 518 8.825774 TCATACTGCCATACCATGATAAGTATT 58.174 33.333 0.00 0.00 32.58 1.89
510 519 9.102757 CATACTGCCATACCATGATAAGTATTC 57.897 37.037 0.00 0.00 32.58 1.75
511 520 7.321717 ACTGCCATACCATGATAAGTATTCT 57.678 36.000 0.00 0.00 0.00 2.40
512 521 7.390027 ACTGCCATACCATGATAAGTATTCTC 58.610 38.462 0.00 0.00 0.00 2.87
513 522 7.236432 ACTGCCATACCATGATAAGTATTCTCT 59.764 37.037 0.00 0.00 0.00 3.10
514 523 7.615403 TGCCATACCATGATAAGTATTCTCTC 58.385 38.462 0.00 0.00 0.00 3.20
515 524 7.044798 GCCATACCATGATAAGTATTCTCTCC 58.955 42.308 0.00 0.00 0.00 3.71
516 525 7.261325 CCATACCATGATAAGTATTCTCTCCG 58.739 42.308 0.00 0.00 0.00 4.63
517 526 7.093727 CCATACCATGATAAGTATTCTCTCCGT 60.094 40.741 0.00 0.00 0.00 4.69
518 527 6.334102 ACCATGATAAGTATTCTCTCCGTC 57.666 41.667 0.00 0.00 0.00 4.79
519 528 5.244178 ACCATGATAAGTATTCTCTCCGTCC 59.756 44.000 0.00 0.00 0.00 4.79
520 529 5.478679 CCATGATAAGTATTCTCTCCGTCCT 59.521 44.000 0.00 0.00 0.00 3.85
521 530 6.659668 CCATGATAAGTATTCTCTCCGTCCTA 59.340 42.308 0.00 0.00 0.00 2.94
522 531 7.340743 CCATGATAAGTATTCTCTCCGTCCTAT 59.659 40.741 0.00 0.00 0.00 2.57
523 532 9.397280 CATGATAAGTATTCTCTCCGTCCTATA 57.603 37.037 0.00 0.00 0.00 1.31
524 533 9.976776 ATGATAAGTATTCTCTCCGTCCTATAA 57.023 33.333 0.00 0.00 0.00 0.98
525 534 9.976776 TGATAAGTATTCTCTCCGTCCTATAAT 57.023 33.333 0.00 0.00 0.00 1.28
533 542 8.508883 TTCTCTCCGTCCTATAATATAAGAGC 57.491 38.462 0.00 0.00 0.00 4.09
534 543 6.762187 TCTCTCCGTCCTATAATATAAGAGCG 59.238 42.308 0.00 0.00 0.00 5.03
535 544 6.413052 TCTCCGTCCTATAATATAAGAGCGT 58.587 40.000 0.00 0.00 0.00 5.07
536 545 6.538021 TCTCCGTCCTATAATATAAGAGCGTC 59.462 42.308 0.00 0.00 0.00 5.19
537 546 6.413052 TCCGTCCTATAATATAAGAGCGTCT 58.587 40.000 0.00 0.00 0.00 4.18
538 547 6.883217 TCCGTCCTATAATATAAGAGCGTCTT 59.117 38.462 5.74 5.74 40.35 3.01
539 548 7.392673 TCCGTCCTATAATATAAGAGCGTCTTT 59.607 37.037 5.74 0.00 37.89 2.52
540 549 8.027771 CCGTCCTATAATATAAGAGCGTCTTTT 58.972 37.037 5.74 2.08 37.89 2.27
549 558 8.853469 ATATAAGAGCGTCTTTTACACTACAC 57.147 34.615 5.74 0.00 37.89 2.90
550 559 4.850347 AGAGCGTCTTTTACACTACACT 57.150 40.909 0.00 0.00 0.00 3.55
551 560 5.954296 AGAGCGTCTTTTACACTACACTA 57.046 39.130 0.00 0.00 0.00 2.74
552 561 5.940595 AGAGCGTCTTTTACACTACACTAG 58.059 41.667 0.00 0.00 0.00 2.57
553 562 5.472820 AGAGCGTCTTTTACACTACACTAGT 59.527 40.000 0.00 0.00 40.28 2.57
554 563 7.995998 AAGAGCGTCTTTTACACTACACTAGTG 60.996 40.741 21.44 21.44 46.58 2.74
565 574 5.291905 ACTACACTAGTGTCAAAAAGGCT 57.708 39.130 31.11 5.98 43.74 4.58
566 575 5.681639 ACTACACTAGTGTCAAAAAGGCTT 58.318 37.500 31.11 5.64 43.74 4.35
567 576 6.120220 ACTACACTAGTGTCAAAAAGGCTTT 58.880 36.000 31.11 6.68 43.74 3.51
581 590 1.278413 AGGCTTTTACTCCCTCCGTTC 59.722 52.381 0.00 0.00 0.00 3.95
588 597 4.748277 TTACTCCCTCCGTTCCTAAATG 57.252 45.455 0.00 0.00 0.00 2.32
590 599 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
591 600 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
598 607 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
610 619 9.965902 AAATGTAAGTCTTTGTAGAGATTCCAT 57.034 29.630 0.00 0.00 0.00 3.41
611 620 9.965902 AATGTAAGTCTTTGTAGAGATTCCATT 57.034 29.630 0.00 0.00 0.00 3.16
626 636 7.878127 AGAGATTCCATTATAAACCACATACGG 59.122 37.037 0.00 0.00 0.00 4.02
628 638 8.383175 AGATTCCATTATAAACCACATACGGAT 58.617 33.333 0.00 0.00 0.00 4.18
629 639 7.737972 TTCCATTATAAACCACATACGGATG 57.262 36.000 5.94 5.94 39.16 3.51
632 642 8.598916 TCCATTATAAACCACATACGGATGTAT 58.401 33.333 14.23 5.54 44.82 2.29
640 650 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
643 653 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
645 655 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
672 682 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
673 683 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
674 684 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
675 685 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
676 686 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
677 687 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
678 688 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
680 690 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
681 691 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
682 692 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
683 693 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
686 696 4.481368 TTGCTCCGTATGTAGTCCATTT 57.519 40.909 0.00 0.00 34.86 2.32
688 698 5.196341 TGCTCCGTATGTAGTCCATTTAG 57.804 43.478 0.00 0.00 34.86 1.85
690 701 4.982916 GCTCCGTATGTAGTCCATTTAGTG 59.017 45.833 0.00 0.00 34.86 2.74
691 702 5.221185 GCTCCGTATGTAGTCCATTTAGTGA 60.221 44.000 0.00 0.00 34.86 3.41
695 706 7.924412 TCCGTATGTAGTCCATTTAGTGAAATC 59.076 37.037 0.00 0.00 32.73 2.17
707 718 9.442047 CCATTTAGTGAAATCTCTACAAAGACT 57.558 33.333 0.00 0.00 32.73 3.24
721 732 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
735 746 1.569548 AGGAACGGAGGGAGTAGATCA 59.430 52.381 0.00 0.00 0.00 2.92
747 758 6.116126 AGGGAGTAGATCAAAAATTTCCTCG 58.884 40.000 0.00 0.00 0.00 4.63
792 804 1.032657 CACGGATCACCTCGAGTCCT 61.033 60.000 12.31 0.00 0.00 3.85
814 826 4.822026 TCGAGCTAGGAGAAAAAGGAAAG 58.178 43.478 0.00 0.00 0.00 2.62
816 828 5.187967 TCGAGCTAGGAGAAAAAGGAAAGAT 59.812 40.000 0.00 0.00 0.00 2.40
817 833 6.380274 TCGAGCTAGGAGAAAAAGGAAAGATA 59.620 38.462 0.00 0.00 0.00 1.98
843 859 4.695217 TGATAACGGAAATGGAAAGCAC 57.305 40.909 0.00 0.00 0.00 4.40
958 974 4.091939 CGGTCCCCTTTCCCCGAC 62.092 72.222 0.00 0.00 43.01 4.79
959 975 2.609921 GGTCCCCTTTCCCCGACT 60.610 66.667 0.00 0.00 0.00 4.18
960 976 2.667108 GGTCCCCTTTCCCCGACTC 61.667 68.421 0.00 0.00 0.00 3.36
961 977 2.285144 TCCCCTTTCCCCGACTCC 60.285 66.667 0.00 0.00 0.00 3.85
962 978 3.408853 CCCCTTTCCCCGACTCCC 61.409 72.222 0.00 0.00 0.00 4.30
1023 1039 1.123928 CCCGATATAGCCTGGATCCC 58.876 60.000 9.90 0.00 0.00 3.85
1060 1087 3.373565 TCGAAGCCGAGCTCAGCA 61.374 61.111 23.40 0.00 38.25 4.41
1160 1187 2.203728 TGAGCCCCCGTACACAGT 60.204 61.111 0.00 0.00 0.00 3.55
1169 1196 2.424956 CCCCGTACACAGTTAGGTAGTC 59.575 54.545 0.00 0.00 0.00 2.59
1271 1304 0.319469 GCTCTAGCCGCTCCTTGATC 60.319 60.000 0.00 0.00 34.31 2.92
1298 1331 7.807907 TGGCGAATTTTCTGTTTAGATTTCTTC 59.192 33.333 0.00 0.00 31.81 2.87
1434 1469 4.819105 TTAGGGTGTCTGTTCATCGAAT 57.181 40.909 0.00 0.00 0.00 3.34
1490 1526 4.979943 TGATTTGCTGTTCTGTCAAACA 57.020 36.364 0.00 0.00 37.56 2.83
1500 1537 5.684704 TGTTCTGTCAAACAAGAGAGGATT 58.315 37.500 0.00 0.00 36.25 3.01
1532 1569 3.685139 ACCTATCATGTCGGCCTATTG 57.315 47.619 0.00 0.00 0.00 1.90
1533 1570 2.972713 ACCTATCATGTCGGCCTATTGT 59.027 45.455 0.00 0.00 0.00 2.71
1534 1571 3.006967 ACCTATCATGTCGGCCTATTGTC 59.993 47.826 0.00 0.00 0.00 3.18
1535 1572 3.006859 CCTATCATGTCGGCCTATTGTCA 59.993 47.826 0.00 0.00 0.00 3.58
1541 1578 2.238646 TGTCGGCCTATTGTCAGGAAAT 59.761 45.455 0.00 0.00 38.00 2.17
1543 1580 4.058817 GTCGGCCTATTGTCAGGAAATAG 58.941 47.826 0.00 0.00 38.00 1.73
1544 1581 2.808543 CGGCCTATTGTCAGGAAATAGC 59.191 50.000 0.00 0.00 38.00 2.97
1585 1623 9.569167 GGAATGCTCTGTTTAGTTTTTATTACC 57.431 33.333 0.00 0.00 0.00 2.85
1741 1782 1.667830 AACAGCGTGGACATCGTGG 60.668 57.895 0.00 0.00 0.00 4.94
1746 1787 1.807165 CGTGGACATCGTGGCTGAG 60.807 63.158 0.00 0.00 0.00 3.35
1793 1834 2.331132 GCACCTTGGAGCAGCTGAC 61.331 63.158 20.43 10.42 0.00 3.51
1806 1847 1.118838 AGCTGACCCACATAGAGAGC 58.881 55.000 0.00 0.00 0.00 4.09
1896 1937 9.862371 GATGTGTTTCTGATTTCTACTCTTCTA 57.138 33.333 0.00 0.00 0.00 2.10
1962 2003 1.630878 AGATTCTTCCAGCGGGAGTTT 59.369 47.619 5.52 0.00 46.01 2.66
2010 2051 2.497675 CAAGAGGATGAAGGAGAACGGA 59.502 50.000 0.00 0.00 0.00 4.69
2046 2087 5.611374 TGGAAGAAACTCTTTGAGGTACAG 58.389 41.667 0.00 0.00 36.73 2.74
2048 2089 6.325545 TGGAAGAAACTCTTTGAGGTACAGTA 59.674 38.462 0.00 0.00 36.73 2.74
2049 2090 7.147620 TGGAAGAAACTCTTTGAGGTACAGTAA 60.148 37.037 0.00 0.00 36.73 2.24
2050 2091 7.713942 GGAAGAAACTCTTTGAGGTACAGTAAA 59.286 37.037 0.00 0.00 36.73 2.01
2051 2092 9.106070 GAAGAAACTCTTTGAGGTACAGTAAAA 57.894 33.333 0.00 0.00 36.73 1.52
2274 2317 5.657474 CATGACACCTATAACGTACCAACT 58.343 41.667 0.00 0.00 0.00 3.16
2280 2323 9.154847 GACACCTATAACGTACCAACTTTTATT 57.845 33.333 0.00 0.00 0.00 1.40
2411 2454 7.066284 ACTCATGTGCAATATTACTTTCTGTCC 59.934 37.037 0.00 0.00 0.00 4.02
2528 2575 1.141881 CTGCTGTATTCTCGCCCGT 59.858 57.895 0.00 0.00 0.00 5.28
2574 2621 6.500684 TCCAGTTTCTGATAAGATGCAAAC 57.499 37.500 0.00 0.00 32.44 2.93
2824 2871 5.682862 GCTCTCATATTACACAATTTTGCCG 59.317 40.000 0.00 0.00 0.00 5.69
3140 3194 1.392589 CTGTGGACAAGTTGGCACTT 58.607 50.000 11.70 0.00 44.72 3.16
3190 3244 6.319141 ACAGGAAAGAATCTTGTTTGTAGC 57.681 37.500 0.00 0.00 45.25 3.58
3217 3271 4.507710 CCAGCTGAGCACTTGTATCTTTA 58.492 43.478 17.39 0.00 0.00 1.85
3239 3295 5.653255 ATAGGGGAGCAAACAATATCTGT 57.347 39.130 0.00 0.00 41.27 3.41
3243 3299 3.883489 GGGAGCAAACAATATCTGTACCC 59.117 47.826 0.00 0.00 37.23 3.69
3293 3349 7.926674 TCAAATCATTGAAGTCATGAGCTTA 57.073 32.000 0.00 0.00 42.47 3.09
3294 3350 8.339344 TCAAATCATTGAAGTCATGAGCTTAA 57.661 30.769 0.00 0.00 42.47 1.85
3295 3351 8.795513 TCAAATCATTGAAGTCATGAGCTTAAA 58.204 29.630 0.00 3.13 42.47 1.52
3329 3385 9.932699 GTGATTCTGATGAGAAATCAAGTAATG 57.067 33.333 0.00 0.00 41.64 1.90
3338 3397 8.620116 TGAGAAATCAAGTAATGACACATGAA 57.380 30.769 0.00 0.00 41.93 2.57
3339 3398 8.506437 TGAGAAATCAAGTAATGACACATGAAC 58.494 33.333 0.00 0.00 41.93 3.18
3379 3438 9.712305 CAATTGTAGATAGTAATCAGTAAGGGG 57.288 37.037 0.00 0.00 34.28 4.79
3380 3439 9.670442 AATTGTAGATAGTAATCAGTAAGGGGA 57.330 33.333 0.00 0.00 34.28 4.81
3381 3440 9.670442 ATTGTAGATAGTAATCAGTAAGGGGAA 57.330 33.333 0.00 0.00 34.28 3.97
3382 3441 9.496710 TTGTAGATAGTAATCAGTAAGGGGAAA 57.503 33.333 0.00 0.00 34.28 3.13
3383 3442 9.670442 TGTAGATAGTAATCAGTAAGGGGAAAT 57.330 33.333 0.00 0.00 34.28 2.17
3384 3443 9.930693 GTAGATAGTAATCAGTAAGGGGAAATG 57.069 37.037 0.00 0.00 34.28 2.32
3385 3444 8.798975 AGATAGTAATCAGTAAGGGGAAATGA 57.201 34.615 0.00 0.00 34.28 2.57
3386 3445 9.398921 AGATAGTAATCAGTAAGGGGAAATGAT 57.601 33.333 0.00 0.00 34.28 2.45
3387 3446 9.442047 GATAGTAATCAGTAAGGGGAAATGATG 57.558 37.037 0.00 0.00 31.24 3.07
3388 3447 7.451731 AGTAATCAGTAAGGGGAAATGATGA 57.548 36.000 0.00 0.00 31.24 2.92
3389 3448 8.050316 AGTAATCAGTAAGGGGAAATGATGAT 57.950 34.615 0.00 0.00 31.24 2.45
3390 3449 8.506083 AGTAATCAGTAAGGGGAAATGATGATT 58.494 33.333 0.00 0.00 39.01 2.57
3391 3450 9.793259 GTAATCAGTAAGGGGAAATGATGATTA 57.207 33.333 0.00 0.00 37.35 1.75
3392 3451 8.930846 AATCAGTAAGGGGAAATGATGATTAG 57.069 34.615 0.00 0.00 35.11 1.73
3393 3452 7.451731 TCAGTAAGGGGAAATGATGATTAGT 57.548 36.000 0.00 0.00 0.00 2.24
3394 3453 8.561536 TCAGTAAGGGGAAATGATGATTAGTA 57.438 34.615 0.00 0.00 0.00 1.82
3395 3454 8.998814 TCAGTAAGGGGAAATGATGATTAGTAA 58.001 33.333 0.00 0.00 0.00 2.24
3396 3455 9.627123 CAGTAAGGGGAAATGATGATTAGTAAA 57.373 33.333 0.00 0.00 0.00 2.01
3397 3456 9.853177 AGTAAGGGGAAATGATGATTAGTAAAG 57.147 33.333 0.00 0.00 0.00 1.85
3398 3457 9.847224 GTAAGGGGAAATGATGATTAGTAAAGA 57.153 33.333 0.00 0.00 0.00 2.52
3427 3486 9.812347 AGATGATGTATTCTACTCTCATCTTCT 57.188 33.333 17.63 12.65 45.59 2.85
3430 3489 9.413734 TGATGTATTCTACTCTCATCTTCTTGA 57.586 33.333 0.00 0.00 36.74 3.02
3462 3521 8.485976 AGATAATTTCAGAAAGGAGAACTTCG 57.514 34.615 1.28 0.00 38.85 3.79
3463 3522 8.097662 AGATAATTTCAGAAAGGAGAACTTCGT 58.902 33.333 1.28 0.00 38.85 3.85
3464 3523 6.944234 AATTTCAGAAAGGAGAACTTCGTT 57.056 33.333 1.28 0.00 38.85 3.85
3465 3524 5.734855 TTTCAGAAAGGAGAACTTCGTTG 57.265 39.130 0.00 0.00 38.85 4.10
3466 3525 4.665833 TCAGAAAGGAGAACTTCGTTGA 57.334 40.909 0.00 0.00 38.85 3.18
3467 3526 5.018539 TCAGAAAGGAGAACTTCGTTGAA 57.981 39.130 0.00 0.00 38.85 2.69
3468 3527 5.611374 TCAGAAAGGAGAACTTCGTTGAAT 58.389 37.500 0.00 0.00 38.85 2.57
3469 3528 6.055588 TCAGAAAGGAGAACTTCGTTGAATT 58.944 36.000 0.00 0.00 38.85 2.17
3470 3529 6.542370 TCAGAAAGGAGAACTTCGTTGAATTT 59.458 34.615 0.00 0.00 38.85 1.82
3471 3530 6.853362 CAGAAAGGAGAACTTCGTTGAATTTC 59.147 38.462 2.49 2.49 38.85 2.17
3472 3531 6.542370 AGAAAGGAGAACTTCGTTGAATTTCA 59.458 34.615 10.83 0.00 38.85 2.69
3473 3532 5.931441 AGGAGAACTTCGTTGAATTTCAG 57.069 39.130 10.83 0.00 34.91 3.02
3474 3533 5.611374 AGGAGAACTTCGTTGAATTTCAGA 58.389 37.500 10.83 0.00 34.91 3.27
3475 3534 5.467063 AGGAGAACTTCGTTGAATTTCAGAC 59.533 40.000 10.83 1.39 34.91 3.51
3476 3535 5.467063 GGAGAACTTCGTTGAATTTCAGACT 59.533 40.000 10.83 0.00 34.91 3.24
3477 3536 6.645415 GGAGAACTTCGTTGAATTTCAGACTA 59.355 38.462 10.83 0.00 34.91 2.59
3478 3537 7.148722 GGAGAACTTCGTTGAATTTCAGACTAG 60.149 40.741 10.83 0.00 34.91 2.57
3479 3538 7.210873 AGAACTTCGTTGAATTTCAGACTAGT 58.789 34.615 0.00 0.00 34.91 2.57
3480 3539 8.358148 AGAACTTCGTTGAATTTCAGACTAGTA 58.642 33.333 0.00 0.00 34.91 1.82
3481 3540 9.141400 GAACTTCGTTGAATTTCAGACTAGTAT 57.859 33.333 0.00 0.00 33.42 2.12
3482 3541 8.690680 ACTTCGTTGAATTTCAGACTAGTATC 57.309 34.615 0.00 0.00 0.00 2.24
3483 3542 8.304596 ACTTCGTTGAATTTCAGACTAGTATCA 58.695 33.333 0.00 0.00 0.00 2.15
3484 3543 9.140286 CTTCGTTGAATTTCAGACTAGTATCAA 57.860 33.333 0.00 0.00 0.00 2.57
3485 3544 8.462143 TCGTTGAATTTCAGACTAGTATCAAC 57.538 34.615 0.00 1.48 41.02 3.18
3486 3545 8.304596 TCGTTGAATTTCAGACTAGTATCAACT 58.695 33.333 12.72 0.00 41.80 3.16
3487 3546 9.569167 CGTTGAATTTCAGACTAGTATCAACTA 57.431 33.333 12.72 0.00 41.80 2.24
3510 3569 9.739276 ACTATTGACTTTTATTTCCACATCAGA 57.261 29.630 0.00 0.00 0.00 3.27
3513 3572 7.395190 TGACTTTTATTTCCACATCAGATGG 57.605 36.000 15.13 0.00 38.71 3.51
3514 3573 7.174413 TGACTTTTATTTCCACATCAGATGGA 58.826 34.615 15.13 1.79 44.74 3.41
3515 3574 7.835682 TGACTTTTATTTCCACATCAGATGGAT 59.164 33.333 15.13 3.68 45.71 3.41
3516 3575 9.342308 GACTTTTATTTCCACATCAGATGGATA 57.658 33.333 15.13 0.76 45.71 2.59
3517 3576 9.872684 ACTTTTATTTCCACATCAGATGGATAT 57.127 29.630 15.13 8.03 45.71 1.63
3521 3580 7.912056 ATTTCCACATCAGATGGATATAACG 57.088 36.000 15.13 0.00 45.71 3.18
3522 3581 4.820897 TCCACATCAGATGGATATAACGC 58.179 43.478 15.13 0.00 41.47 4.84
3523 3582 3.614176 CCACATCAGATGGATATAACGCG 59.386 47.826 15.13 3.53 39.87 6.01
3524 3583 4.237724 CACATCAGATGGATATAACGCGT 58.762 43.478 5.58 5.58 33.95 6.01
3525 3584 5.399013 CACATCAGATGGATATAACGCGTA 58.601 41.667 14.46 0.00 33.95 4.42
3526 3585 5.861787 CACATCAGATGGATATAACGCGTAA 59.138 40.000 14.46 0.75 33.95 3.18
3527 3586 5.862323 ACATCAGATGGATATAACGCGTAAC 59.138 40.000 14.46 2.16 33.95 2.50
3528 3587 5.700722 TCAGATGGATATAACGCGTAACT 57.299 39.130 14.46 0.00 0.00 2.24
3529 3588 6.080648 TCAGATGGATATAACGCGTAACTT 57.919 37.500 14.46 0.00 0.00 2.66
3530 3589 6.509656 TCAGATGGATATAACGCGTAACTTT 58.490 36.000 14.46 0.00 0.00 2.66
3531 3590 7.650890 TCAGATGGATATAACGCGTAACTTTA 58.349 34.615 14.46 0.00 0.00 1.85
3532 3591 8.136800 TCAGATGGATATAACGCGTAACTTTAA 58.863 33.333 14.46 0.00 0.00 1.52
3533 3592 8.757789 CAGATGGATATAACGCGTAACTTTAAA 58.242 33.333 14.46 0.00 0.00 1.52
3534 3593 9.316730 AGATGGATATAACGCGTAACTTTAAAA 57.683 29.630 14.46 0.00 0.00 1.52
3535 3594 9.919348 GATGGATATAACGCGTAACTTTAAAAA 57.081 29.630 14.46 0.00 0.00 1.94
3567 3626 6.673839 ATTTAGATAAGGGTAGGTCTCTGC 57.326 41.667 0.00 0.00 0.00 4.26
3568 3627 3.689872 AGATAAGGGTAGGTCTCTGCA 57.310 47.619 0.00 0.00 0.00 4.41
3569 3628 3.995636 AGATAAGGGTAGGTCTCTGCAA 58.004 45.455 0.00 0.00 0.00 4.08
3570 3629 4.561752 AGATAAGGGTAGGTCTCTGCAAT 58.438 43.478 0.00 0.00 0.00 3.56
3571 3630 4.971924 AGATAAGGGTAGGTCTCTGCAATT 59.028 41.667 0.00 0.00 0.00 2.32
3572 3631 3.636153 AAGGGTAGGTCTCTGCAATTC 57.364 47.619 0.00 0.00 0.00 2.17
3573 3632 2.551270 AGGGTAGGTCTCTGCAATTCA 58.449 47.619 0.00 0.00 0.00 2.57
3574 3633 3.118531 AGGGTAGGTCTCTGCAATTCAT 58.881 45.455 0.00 0.00 0.00 2.57
3575 3634 3.525199 AGGGTAGGTCTCTGCAATTCATT 59.475 43.478 0.00 0.00 0.00 2.57
3576 3635 4.018050 AGGGTAGGTCTCTGCAATTCATTT 60.018 41.667 0.00 0.00 0.00 2.32
3577 3636 4.706962 GGGTAGGTCTCTGCAATTCATTTT 59.293 41.667 0.00 0.00 0.00 1.82
3578 3637 5.393461 GGGTAGGTCTCTGCAATTCATTTTG 60.393 44.000 0.00 0.00 0.00 2.44
3579 3638 5.415701 GGTAGGTCTCTGCAATTCATTTTGA 59.584 40.000 0.00 0.00 0.00 2.69
3580 3639 6.071952 GGTAGGTCTCTGCAATTCATTTTGAA 60.072 38.462 0.00 0.00 41.09 2.69
3581 3640 6.409524 AGGTCTCTGCAATTCATTTTGAAA 57.590 33.333 0.00 0.00 40.12 2.69
3582 3641 6.453092 AGGTCTCTGCAATTCATTTTGAAAG 58.547 36.000 0.00 0.00 40.12 2.62
3583 3642 6.266103 AGGTCTCTGCAATTCATTTTGAAAGA 59.734 34.615 0.00 0.00 40.12 2.52
3584 3643 6.925165 GGTCTCTGCAATTCATTTTGAAAGAA 59.075 34.615 0.00 0.00 40.12 2.52
3585 3644 7.115947 GGTCTCTGCAATTCATTTTGAAAGAAG 59.884 37.037 0.00 0.00 40.12 2.85
3586 3645 7.864379 GTCTCTGCAATTCATTTTGAAAGAAGA 59.136 33.333 0.00 0.14 40.12 2.87
3587 3646 8.415553 TCTCTGCAATTCATTTTGAAAGAAGAA 58.584 29.630 0.00 0.00 40.12 2.52
3588 3647 8.945481 TCTGCAATTCATTTTGAAAGAAGAAA 57.055 26.923 0.00 0.00 40.12 2.52
3589 3648 9.381033 TCTGCAATTCATTTTGAAAGAAGAAAA 57.619 25.926 0.00 0.00 40.12 2.29
3590 3649 9.991388 CTGCAATTCATTTTGAAAGAAGAAAAA 57.009 25.926 0.00 0.00 40.12 1.94
3591 3650 9.771915 TGCAATTCATTTTGAAAGAAGAAAAAC 57.228 25.926 0.00 0.00 40.12 2.43
3592 3651 8.936936 GCAATTCATTTTGAAAGAAGAAAAACG 58.063 29.630 0.00 0.00 40.12 3.60
3593 3652 8.936936 CAATTCATTTTGAAAGAAGAAAAACGC 58.063 29.630 0.00 0.00 40.12 4.84
3594 3653 7.588143 TTCATTTTGAAAGAAGAAAAACGCA 57.412 28.000 0.00 0.00 32.71 5.24
3595 3654 6.988329 TCATTTTGAAAGAAGAAAAACGCAC 58.012 32.000 0.00 0.00 0.00 5.34
3596 3655 6.587990 TCATTTTGAAAGAAGAAAAACGCACA 59.412 30.769 0.00 0.00 0.00 4.57
3597 3656 5.755330 TTTGAAAGAAGAAAAACGCACAC 57.245 34.783 0.00 0.00 0.00 3.82
3610 3669 3.345808 CACACGTGTGGCCGGAAG 61.346 66.667 35.65 12.08 42.10 3.46
3620 3679 2.908940 GCCGGAAGCCCATCATGG 60.909 66.667 5.05 0.00 37.25 3.66
3621 3680 2.918248 CCGGAAGCCCATCATGGA 59.082 61.111 4.75 0.00 40.96 3.41
3622 3681 1.457604 CCGGAAGCCCATCATGGAT 59.542 57.895 4.75 0.00 40.96 3.41
3623 3682 0.692476 CCGGAAGCCCATCATGGATA 59.308 55.000 4.75 0.00 40.96 2.59
3624 3683 1.339438 CCGGAAGCCCATCATGGATAG 60.339 57.143 4.75 0.00 40.96 2.08
3625 3684 1.831580 GGAAGCCCATCATGGATAGC 58.168 55.000 4.75 0.00 40.96 2.97
3626 3685 1.353694 GGAAGCCCATCATGGATAGCT 59.646 52.381 4.75 2.12 40.96 3.32
3627 3686 2.224967 GGAAGCCCATCATGGATAGCTT 60.225 50.000 16.19 16.19 40.96 3.74
3628 3687 3.494332 GAAGCCCATCATGGATAGCTTT 58.506 45.455 17.02 4.59 40.96 3.51
3629 3688 2.872732 AGCCCATCATGGATAGCTTTG 58.127 47.619 4.75 0.00 40.96 2.77
3630 3689 2.176364 AGCCCATCATGGATAGCTTTGT 59.824 45.455 4.75 0.00 40.96 2.83
3631 3690 2.961062 GCCCATCATGGATAGCTTTGTT 59.039 45.455 4.75 0.00 40.96 2.83
3632 3691 3.385755 GCCCATCATGGATAGCTTTGTTT 59.614 43.478 4.75 0.00 40.96 2.83
3633 3692 4.584325 GCCCATCATGGATAGCTTTGTTTA 59.416 41.667 4.75 0.00 40.96 2.01
3634 3693 5.507985 GCCCATCATGGATAGCTTTGTTTAC 60.508 44.000 4.75 0.00 40.96 2.01
3635 3694 5.593909 CCCATCATGGATAGCTTTGTTTACA 59.406 40.000 4.75 0.00 40.96 2.41
3636 3695 6.266103 CCCATCATGGATAGCTTTGTTTACAT 59.734 38.462 4.75 0.00 40.96 2.29
3637 3696 7.365741 CCATCATGGATAGCTTTGTTTACATC 58.634 38.462 0.00 0.00 40.96 3.06
3638 3697 6.603237 TCATGGATAGCTTTGTTTACATCG 57.397 37.500 0.00 0.00 0.00 3.84
3639 3698 6.112734 TCATGGATAGCTTTGTTTACATCGT 58.887 36.000 0.00 0.00 0.00 3.73
3640 3699 6.597672 TCATGGATAGCTTTGTTTACATCGTT 59.402 34.615 0.00 0.00 0.00 3.85
3641 3700 6.417191 TGGATAGCTTTGTTTACATCGTTC 57.583 37.500 0.00 0.00 0.00 3.95
3642 3701 5.935206 TGGATAGCTTTGTTTACATCGTTCA 59.065 36.000 0.00 0.00 0.00 3.18
3643 3702 6.597672 TGGATAGCTTTGTTTACATCGTTCAT 59.402 34.615 0.00 0.00 0.00 2.57
3644 3703 6.907212 GGATAGCTTTGTTTACATCGTTCATG 59.093 38.462 0.00 0.00 38.64 3.07
3645 3704 4.475944 AGCTTTGTTTACATCGTTCATGC 58.524 39.130 0.00 0.00 35.65 4.06
3646 3705 4.023279 AGCTTTGTTTACATCGTTCATGCA 60.023 37.500 0.00 0.00 35.65 3.96
3647 3706 4.679197 GCTTTGTTTACATCGTTCATGCAA 59.321 37.500 0.00 0.00 35.65 4.08
3648 3707 5.345741 GCTTTGTTTACATCGTTCATGCAAT 59.654 36.000 0.00 0.00 35.65 3.56
3649 3708 6.128849 GCTTTGTTTACATCGTTCATGCAATT 60.129 34.615 0.00 0.00 35.65 2.32
3650 3709 7.061673 GCTTTGTTTACATCGTTCATGCAATTA 59.938 33.333 0.00 0.00 35.65 1.40
3651 3710 7.789341 TTGTTTACATCGTTCATGCAATTAC 57.211 32.000 0.00 0.00 35.65 1.89
3652 3711 6.903419 TGTTTACATCGTTCATGCAATTACA 58.097 32.000 0.00 0.00 35.65 2.41
3653 3712 6.799441 TGTTTACATCGTTCATGCAATTACAC 59.201 34.615 0.00 0.00 35.65 2.90
3654 3713 6.487689 TTACATCGTTCATGCAATTACACA 57.512 33.333 0.00 0.00 35.65 3.72
3655 3714 5.565592 ACATCGTTCATGCAATTACACAT 57.434 34.783 0.00 0.00 35.65 3.21
3656 3715 6.676237 ACATCGTTCATGCAATTACACATA 57.324 33.333 0.00 0.00 35.65 2.29
3657 3716 6.718388 ACATCGTTCATGCAATTACACATAG 58.282 36.000 0.00 0.00 35.65 2.23
3658 3717 5.733226 TCGTTCATGCAATTACACATAGG 57.267 39.130 0.00 0.00 0.00 2.57
3659 3718 5.423886 TCGTTCATGCAATTACACATAGGA 58.576 37.500 0.00 0.00 0.00 2.94
3660 3719 5.877564 TCGTTCATGCAATTACACATAGGAA 59.122 36.000 0.00 0.00 0.00 3.36
3661 3720 6.372937 TCGTTCATGCAATTACACATAGGAAA 59.627 34.615 0.00 0.00 0.00 3.13
3662 3721 6.688385 CGTTCATGCAATTACACATAGGAAAG 59.312 38.462 0.00 0.00 0.00 2.62
3663 3722 6.135290 TCATGCAATTACACATAGGAAAGC 57.865 37.500 0.00 0.00 0.00 3.51
3664 3723 5.887598 TCATGCAATTACACATAGGAAAGCT 59.112 36.000 0.00 0.00 0.00 3.74
3665 3724 5.818136 TGCAATTACACATAGGAAAGCTC 57.182 39.130 0.00 0.00 0.00 4.09
3666 3725 5.252547 TGCAATTACACATAGGAAAGCTCA 58.747 37.500 0.00 0.00 0.00 4.26
3667 3726 5.355071 TGCAATTACACATAGGAAAGCTCAG 59.645 40.000 0.00 0.00 0.00 3.35
3668 3727 5.220931 GCAATTACACATAGGAAAGCTCAGG 60.221 44.000 0.00 0.00 0.00 3.86
3669 3728 4.487714 TTACACATAGGAAAGCTCAGGG 57.512 45.455 0.00 0.00 0.00 4.45
3670 3729 2.551270 ACACATAGGAAAGCTCAGGGA 58.449 47.619 0.00 0.00 0.00 4.20
3671 3730 2.503356 ACACATAGGAAAGCTCAGGGAG 59.497 50.000 0.00 0.00 0.00 4.30
3683 3742 2.903798 CTCAGGGAGCTCATCAAAGAC 58.096 52.381 17.19 0.00 0.00 3.01
3684 3743 1.205655 TCAGGGAGCTCATCAAAGACG 59.794 52.381 17.19 0.00 0.00 4.18
3685 3744 1.205655 CAGGGAGCTCATCAAAGACGA 59.794 52.381 17.19 0.00 0.00 4.20
3686 3745 1.205893 AGGGAGCTCATCAAAGACGAC 59.794 52.381 17.19 0.00 0.00 4.34
3687 3746 1.066858 GGGAGCTCATCAAAGACGACA 60.067 52.381 17.19 0.00 0.00 4.35
3688 3747 2.612972 GGGAGCTCATCAAAGACGACAA 60.613 50.000 17.19 0.00 0.00 3.18
3689 3748 3.067106 GGAGCTCATCAAAGACGACAAA 58.933 45.455 17.19 0.00 0.00 2.83
3690 3749 3.120511 GGAGCTCATCAAAGACGACAAAC 60.121 47.826 17.19 0.00 0.00 2.93
3691 3750 3.466836 AGCTCATCAAAGACGACAAACA 58.533 40.909 0.00 0.00 0.00 2.83
3692 3751 3.876914 AGCTCATCAAAGACGACAAACAA 59.123 39.130 0.00 0.00 0.00 2.83
3693 3752 4.335315 AGCTCATCAAAGACGACAAACAAA 59.665 37.500 0.00 0.00 0.00 2.83
3694 3753 5.034152 GCTCATCAAAGACGACAAACAAAA 58.966 37.500 0.00 0.00 0.00 2.44
3695 3754 5.172053 GCTCATCAAAGACGACAAACAAAAG 59.828 40.000 0.00 0.00 0.00 2.27
3696 3755 5.034152 TCATCAAAGACGACAAACAAAAGC 58.966 37.500 0.00 0.00 0.00 3.51
3697 3756 4.695217 TCAAAGACGACAAACAAAAGCT 57.305 36.364 0.00 0.00 0.00 3.74
3698 3757 4.658071 TCAAAGACGACAAACAAAAGCTC 58.342 39.130 0.00 0.00 0.00 4.09
3699 3758 4.394920 TCAAAGACGACAAACAAAAGCTCT 59.605 37.500 0.00 0.00 0.00 4.09
3700 3759 4.537936 AAGACGACAAACAAAAGCTCTC 57.462 40.909 0.00 0.00 0.00 3.20
3701 3760 3.531538 AGACGACAAACAAAAGCTCTCA 58.468 40.909 0.00 0.00 0.00 3.27
3702 3761 3.938963 AGACGACAAACAAAAGCTCTCAA 59.061 39.130 0.00 0.00 0.00 3.02
3703 3762 4.394920 AGACGACAAACAAAAGCTCTCAAA 59.605 37.500 0.00 0.00 0.00 2.69
3704 3763 5.066505 AGACGACAAACAAAAGCTCTCAAAT 59.933 36.000 0.00 0.00 0.00 2.32
3705 3764 6.260050 AGACGACAAACAAAAGCTCTCAAATA 59.740 34.615 0.00 0.00 0.00 1.40
3706 3765 6.199393 ACGACAAACAAAAGCTCTCAAATAC 58.801 36.000 0.00 0.00 0.00 1.89
3707 3766 6.038271 ACGACAAACAAAAGCTCTCAAATACT 59.962 34.615 0.00 0.00 0.00 2.12
3708 3767 7.225931 ACGACAAACAAAAGCTCTCAAATACTA 59.774 33.333 0.00 0.00 0.00 1.82
3709 3768 8.067784 CGACAAACAAAAGCTCTCAAATACTAA 58.932 33.333 0.00 0.00 0.00 2.24
3710 3769 9.170584 GACAAACAAAAGCTCTCAAATACTAAC 57.829 33.333 0.00 0.00 0.00 2.34
3711 3770 8.903820 ACAAACAAAAGCTCTCAAATACTAACT 58.096 29.630 0.00 0.00 0.00 2.24
3720 3779 9.979578 AGCTCTCAAATACTAACTAATCAGATG 57.020 33.333 0.00 0.00 0.00 2.90
3721 3780 8.707839 GCTCTCAAATACTAACTAATCAGATGC 58.292 37.037 0.00 0.00 0.00 3.91
3722 3781 9.755804 CTCTCAAATACTAACTAATCAGATGCA 57.244 33.333 0.00 0.00 0.00 3.96
3725 3784 9.665719 TCAAATACTAACTAATCAGATGCAACA 57.334 29.630 0.00 0.00 0.00 3.33
3726 3785 9.926751 CAAATACTAACTAATCAGATGCAACAG 57.073 33.333 0.00 0.00 0.00 3.16
3727 3786 8.668510 AATACTAACTAATCAGATGCAACAGG 57.331 34.615 0.00 0.00 0.00 4.00
3728 3787 4.878397 ACTAACTAATCAGATGCAACAGGC 59.122 41.667 0.00 0.00 45.13 4.85
3741 3800 4.021191 GCAACAGGCAATTAGCTAGTTC 57.979 45.455 0.00 0.00 44.79 3.01
3742 3801 3.691609 GCAACAGGCAATTAGCTAGTTCT 59.308 43.478 0.00 0.00 44.79 3.01
3743 3802 4.876107 GCAACAGGCAATTAGCTAGTTCTA 59.124 41.667 0.00 0.00 44.79 2.10
3744 3803 5.529060 GCAACAGGCAATTAGCTAGTTCTAT 59.471 40.000 0.00 0.00 44.79 1.98
3745 3804 6.512415 GCAACAGGCAATTAGCTAGTTCTATG 60.512 42.308 0.00 1.24 44.79 2.23
3746 3805 6.485830 ACAGGCAATTAGCTAGTTCTATGA 57.514 37.500 0.00 0.00 44.79 2.15
3747 3806 6.284459 ACAGGCAATTAGCTAGTTCTATGAC 58.716 40.000 0.00 0.00 44.79 3.06
3748 3807 6.127054 ACAGGCAATTAGCTAGTTCTATGACA 60.127 38.462 0.00 0.00 44.79 3.58
3749 3808 6.423302 CAGGCAATTAGCTAGTTCTATGACAG 59.577 42.308 0.00 0.00 44.79 3.51
3750 3809 6.325028 AGGCAATTAGCTAGTTCTATGACAGA 59.675 38.462 0.00 0.00 44.79 3.41
3751 3810 7.016072 AGGCAATTAGCTAGTTCTATGACAGAT 59.984 37.037 0.00 0.00 44.79 2.90
3752 3811 7.659390 GGCAATTAGCTAGTTCTATGACAGATT 59.341 37.037 0.00 0.00 44.79 2.40
3753 3812 9.698309 GCAATTAGCTAGTTCTATGACAGATTA 57.302 33.333 0.00 0.00 41.15 1.75
3798 3857 8.526147 ACTTTACATGAGAAAAATCATCCAAGG 58.474 33.333 0.00 0.00 37.84 3.61
3799 3858 8.648698 TTTACATGAGAAAAATCATCCAAGGA 57.351 30.769 0.00 0.00 37.84 3.36
3800 3859 8.827832 TTACATGAGAAAAATCATCCAAGGAT 57.172 30.769 0.00 0.00 37.84 3.24
3801 3860 7.344095 ACATGAGAAAAATCATCCAAGGATC 57.656 36.000 0.00 0.00 37.84 3.36
3802 3861 6.893554 ACATGAGAAAAATCATCCAAGGATCA 59.106 34.615 0.00 0.00 37.84 2.92
3803 3862 7.398047 ACATGAGAAAAATCATCCAAGGATCAA 59.602 33.333 0.00 0.00 37.84 2.57
3804 3863 7.779754 TGAGAAAAATCATCCAAGGATCAAA 57.220 32.000 0.00 0.00 31.62 2.69
3805 3864 8.192743 TGAGAAAAATCATCCAAGGATCAAAA 57.807 30.769 0.00 0.00 31.62 2.44
3806 3865 8.090214 TGAGAAAAATCATCCAAGGATCAAAAC 58.910 33.333 0.00 0.00 31.62 2.43
3807 3866 8.198807 AGAAAAATCATCCAAGGATCAAAACT 57.801 30.769 0.00 0.00 31.62 2.66
3808 3867 8.654094 AGAAAAATCATCCAAGGATCAAAACTT 58.346 29.630 0.00 0.00 31.62 2.66
3809 3868 9.276590 GAAAAATCATCCAAGGATCAAAACTTT 57.723 29.630 0.00 0.00 31.62 2.66
3810 3869 8.837788 AAAATCATCCAAGGATCAAAACTTTC 57.162 30.769 0.00 0.00 31.62 2.62
3811 3870 7.787623 AATCATCCAAGGATCAAAACTTTCT 57.212 32.000 0.00 0.00 31.62 2.52
3812 3871 6.579666 TCATCCAAGGATCAAAACTTTCTG 57.420 37.500 0.00 0.00 31.62 3.02
3813 3872 6.306199 TCATCCAAGGATCAAAACTTTCTGA 58.694 36.000 0.00 0.00 31.62 3.27
3814 3873 6.207417 TCATCCAAGGATCAAAACTTTCTGAC 59.793 38.462 0.00 0.00 31.62 3.51
3815 3874 4.515191 TCCAAGGATCAAAACTTTCTGACG 59.485 41.667 0.00 0.00 0.00 4.35
3816 3875 4.222114 CAAGGATCAAAACTTTCTGACGC 58.778 43.478 0.00 0.00 0.00 5.19
3817 3876 2.814336 AGGATCAAAACTTTCTGACGCC 59.186 45.455 0.00 0.00 0.00 5.68
3818 3877 2.095212 GGATCAAAACTTTCTGACGCCC 60.095 50.000 0.00 0.00 0.00 6.13
3819 3878 2.341846 TCAAAACTTTCTGACGCCCT 57.658 45.000 0.00 0.00 0.00 5.19
3820 3879 1.946768 TCAAAACTTTCTGACGCCCTG 59.053 47.619 0.00 0.00 0.00 4.45
3821 3880 0.668535 AAAACTTTCTGACGCCCTGC 59.331 50.000 0.00 0.00 0.00 4.85
3822 3881 1.172812 AAACTTTCTGACGCCCTGCC 61.173 55.000 0.00 0.00 0.00 4.85
3823 3882 2.747855 CTTTCTGACGCCCTGCCC 60.748 66.667 0.00 0.00 0.00 5.36
3824 3883 3.249189 TTTCTGACGCCCTGCCCT 61.249 61.111 0.00 0.00 0.00 5.19
3825 3884 3.551496 TTTCTGACGCCCTGCCCTG 62.551 63.158 0.00 0.00 0.00 4.45
3838 3897 4.161295 CCCTGGCCAGCGATCGAA 62.161 66.667 28.39 0.00 0.00 3.71
3839 3898 2.587194 CCTGGCCAGCGATCGAAG 60.587 66.667 28.39 9.87 0.00 3.79
3840 3899 3.267860 CTGGCCAGCGATCGAAGC 61.268 66.667 22.33 16.99 0.00 3.86
3841 3900 4.081185 TGGCCAGCGATCGAAGCA 62.081 61.111 21.57 5.98 37.01 3.91
3842 3901 3.267860 GGCCAGCGATCGAAGCAG 61.268 66.667 21.57 9.71 37.01 4.24
3843 3902 2.202797 GCCAGCGATCGAAGCAGA 60.203 61.111 21.57 0.00 37.01 4.26
3844 3903 2.236382 GCCAGCGATCGAAGCAGAG 61.236 63.158 21.57 0.26 37.01 3.35
3845 3904 1.140589 CCAGCGATCGAAGCAGAGT 59.859 57.895 21.57 0.00 37.01 3.24
3846 3905 0.382158 CCAGCGATCGAAGCAGAGTA 59.618 55.000 21.57 0.00 37.01 2.59
3847 3906 1.202302 CCAGCGATCGAAGCAGAGTAA 60.202 52.381 21.57 0.00 37.01 2.24
3848 3907 2.544694 CCAGCGATCGAAGCAGAGTAAT 60.545 50.000 21.57 0.00 37.01 1.89
3849 3908 2.723658 CAGCGATCGAAGCAGAGTAATC 59.276 50.000 21.57 0.00 37.01 1.75
3850 3909 2.621055 AGCGATCGAAGCAGAGTAATCT 59.379 45.455 21.57 0.00 37.01 2.40
3851 3910 2.723658 GCGATCGAAGCAGAGTAATCTG 59.276 50.000 21.57 15.74 40.51 2.90
3852 3911 3.793801 GCGATCGAAGCAGAGTAATCTGT 60.794 47.826 21.57 2.51 39.76 3.41
3853 3912 4.355437 CGATCGAAGCAGAGTAATCTGTT 58.645 43.478 20.40 12.72 39.76 3.16
3854 3913 4.800993 CGATCGAAGCAGAGTAATCTGTTT 59.199 41.667 20.08 20.08 42.42 2.83
3855 3914 5.289675 CGATCGAAGCAGAGTAATCTGTTTT 59.710 40.000 20.75 15.31 40.40 2.43
3856 3915 6.507141 CGATCGAAGCAGAGTAATCTGTTTTC 60.507 42.308 20.75 20.40 40.40 2.29
3857 3916 5.784177 TCGAAGCAGAGTAATCTGTTTTCT 58.216 37.500 20.75 7.79 40.40 2.52
3858 3917 5.864474 TCGAAGCAGAGTAATCTGTTTTCTC 59.136 40.000 20.75 9.70 40.40 2.87
3859 3918 5.866633 CGAAGCAGAGTAATCTGTTTTCTCT 59.133 40.000 20.75 6.80 40.40 3.10
3860 3919 6.367422 CGAAGCAGAGTAATCTGTTTTCTCTT 59.633 38.462 20.75 13.99 40.40 2.85
3861 3920 7.411372 CGAAGCAGAGTAATCTGTTTTCTCTTC 60.411 40.741 20.75 19.28 40.40 2.87
3862 3921 6.169800 AGCAGAGTAATCTGTTTTCTCTTCC 58.830 40.000 20.40 1.13 39.76 3.46
3863 3922 5.352846 GCAGAGTAATCTGTTTTCTCTTCCC 59.647 44.000 20.40 0.00 39.76 3.97
3864 3923 6.706295 CAGAGTAATCTGTTTTCTCTTCCCT 58.294 40.000 12.02 0.00 33.92 4.20
3865 3924 7.164803 CAGAGTAATCTGTTTTCTCTTCCCTT 58.835 38.462 12.02 0.00 33.92 3.95
3866 3925 7.118971 CAGAGTAATCTGTTTTCTCTTCCCTTG 59.881 40.741 12.02 0.00 33.92 3.61
3867 3926 6.842676 AGTAATCTGTTTTCTCTTCCCTTGT 58.157 36.000 0.00 0.00 0.00 3.16
3868 3927 7.290813 AGTAATCTGTTTTCTCTTCCCTTGTT 58.709 34.615 0.00 0.00 0.00 2.83
3869 3928 7.780271 AGTAATCTGTTTTCTCTTCCCTTGTTT 59.220 33.333 0.00 0.00 0.00 2.83
3870 3929 7.423844 AATCTGTTTTCTCTTCCCTTGTTTT 57.576 32.000 0.00 0.00 0.00 2.43
3871 3930 6.850752 TCTGTTTTCTCTTCCCTTGTTTTT 57.149 33.333 0.00 0.00 0.00 1.94
3872 3931 6.863275 TCTGTTTTCTCTTCCCTTGTTTTTC 58.137 36.000 0.00 0.00 0.00 2.29
3873 3932 6.435904 TCTGTTTTCTCTTCCCTTGTTTTTCA 59.564 34.615 0.00 0.00 0.00 2.69
3874 3933 6.998802 TGTTTTCTCTTCCCTTGTTTTTCAA 58.001 32.000 0.00 0.00 34.61 2.69
3887 3946 6.713762 TTGTTTTTCAAGATGGTCAGTGAT 57.286 33.333 0.00 0.00 0.00 3.06
3888 3947 6.075762 TGTTTTTCAAGATGGTCAGTGATG 57.924 37.500 0.00 0.00 0.00 3.07
3889 3948 4.771590 TTTTCAAGATGGTCAGTGATGC 57.228 40.909 0.00 0.00 0.00 3.91
3890 3949 2.014335 TCAAGATGGTCAGTGATGCG 57.986 50.000 0.00 0.00 0.00 4.73
3891 3950 1.012086 CAAGATGGTCAGTGATGCGG 58.988 55.000 0.00 0.00 0.00 5.69
3892 3951 0.107508 AAGATGGTCAGTGATGCGGG 60.108 55.000 0.00 0.00 0.00 6.13
3893 3952 2.124570 ATGGTCAGTGATGCGGGC 60.125 61.111 0.00 0.00 0.00 6.13
3894 3953 2.599645 GATGGTCAGTGATGCGGGCT 62.600 60.000 0.00 0.00 0.00 5.19
3895 3954 2.821366 GGTCAGTGATGCGGGCTG 60.821 66.667 0.00 0.00 0.00 4.85
3896 3955 2.821366 GTCAGTGATGCGGGCTGG 60.821 66.667 0.00 0.00 0.00 4.85
3897 3956 4.783621 TCAGTGATGCGGGCTGGC 62.784 66.667 0.00 0.00 0.00 4.85
3910 3969 1.584380 GGCTGGCACAAGAAGCTCTG 61.584 60.000 0.00 0.00 38.70 3.35
3976 4036 1.336440 CCAGCTGATACTCTGACCTCG 59.664 57.143 17.39 0.00 32.26 4.63
4120 4271 8.897752 ACCAACCTTAATAAGTAGTACTACTCG 58.102 37.037 30.81 16.49 44.96 4.18
4121 4272 8.897752 CCAACCTTAATAAGTAGTACTACTCGT 58.102 37.037 30.81 20.67 44.96 4.18
4122 4273 9.928236 CAACCTTAATAAGTAGTACTACTCGTC 57.072 37.037 30.81 7.60 44.96 4.20
4135 4286 8.201554 AGTACTACTCGTCGTATGTATTTCAA 57.798 34.615 0.00 0.00 0.00 2.69
4144 4295 8.853345 TCGTCGTATGTATTTCAAAGTAGAAAC 58.147 33.333 0.00 0.00 40.03 2.78
4166 4317 5.351458 ACTGGTGAAAAGCTTGTTCAAATC 58.649 37.500 19.06 14.09 36.77 2.17
4179 4330 6.509997 GCTTGTTCAAATCAAAATGTGGTGAC 60.510 38.462 0.00 0.00 0.00 3.67
4220 4377 1.076485 AGCCATTTGCCCAGCTAGG 60.076 57.895 0.00 0.00 42.71 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
235 237 2.596904 AACATATCCACCGAAGACCG 57.403 50.000 0.00 0.00 38.18 4.79
250 252 4.508662 GAAGGAAGACTGGATCGAAACAT 58.491 43.478 0.00 0.00 0.00 2.71
253 255 2.561419 ACGAAGGAAGACTGGATCGAAA 59.439 45.455 0.00 0.00 34.62 3.46
281 283 1.153349 GATCGAGGGTCCAACCTGC 60.153 63.158 0.00 0.00 42.10 4.85
363 370 2.486982 GCCTGTTGTAGTAGACAGTCGA 59.513 50.000 10.94 0.00 41.24 4.20
392 399 0.390860 GTCATCACCCTCCCTCATCG 59.609 60.000 0.00 0.00 0.00 3.84
467 475 8.797438 TGGCAGTATGAAAACACACAAATAATA 58.203 29.630 0.00 0.00 39.69 0.98
475 483 4.457603 TGGTATGGCAGTATGAAAACACAC 59.542 41.667 0.00 0.00 39.69 3.82
508 517 7.280428 CGCTCTTATATTATAGGACGGAGAGAA 59.720 40.741 10.17 0.00 32.02 2.87
509 518 6.762187 CGCTCTTATATTATAGGACGGAGAGA 59.238 42.308 10.17 0.00 32.02 3.10
510 519 6.539464 ACGCTCTTATATTATAGGACGGAGAG 59.461 42.308 15.28 10.49 33.16 3.20
511 520 6.413052 ACGCTCTTATATTATAGGACGGAGA 58.587 40.000 15.28 3.34 0.00 3.71
512 521 6.539464 AGACGCTCTTATATTATAGGACGGAG 59.461 42.308 15.28 0.00 0.00 4.63
513 522 6.413052 AGACGCTCTTATATTATAGGACGGA 58.587 40.000 15.28 0.00 0.00 4.69
514 523 6.680874 AGACGCTCTTATATTATAGGACGG 57.319 41.667 15.28 5.50 0.00 4.79
515 524 8.967552 AAAAGACGCTCTTATATTATAGGACG 57.032 34.615 12.07 12.07 35.27 4.79
523 532 9.298774 GTGTAGTGTAAAAGACGCTCTTATATT 57.701 33.333 0.00 0.00 46.22 1.28
524 533 8.684520 AGTGTAGTGTAAAAGACGCTCTTATAT 58.315 33.333 0.00 0.00 46.22 0.86
525 534 8.048534 AGTGTAGTGTAAAAGACGCTCTTATA 57.951 34.615 0.00 0.00 46.22 0.98
526 535 6.921914 AGTGTAGTGTAAAAGACGCTCTTAT 58.078 36.000 0.00 0.00 46.22 1.73
527 536 6.323203 AGTGTAGTGTAAAAGACGCTCTTA 57.677 37.500 0.00 0.00 46.22 2.10
528 537 5.197682 AGTGTAGTGTAAAAGACGCTCTT 57.802 39.130 0.00 0.00 46.22 2.85
529 538 4.850347 AGTGTAGTGTAAAAGACGCTCT 57.150 40.909 0.00 0.00 46.22 4.09
530 539 5.568296 CACTAGTGTAGTGTAAAAGACGCTC 59.432 44.000 15.06 0.00 46.22 5.03
542 551 7.415206 AAAAGCCTTTTTGACACTAGTGTAGTG 60.415 37.037 27.98 15.02 45.82 2.74
543 552 5.291905 AGCCTTTTTGACACTAGTGTAGT 57.708 39.130 27.98 6.32 45.05 2.73
544 553 6.619801 AAAGCCTTTTTGACACTAGTGTAG 57.380 37.500 27.98 19.90 45.05 2.74
545 554 7.771826 AGTAAAAGCCTTTTTGACACTAGTGTA 59.228 33.333 27.98 11.50 39.40 2.90
546 555 6.602009 AGTAAAAGCCTTTTTGACACTAGTGT 59.398 34.615 28.27 28.27 40.62 3.55
547 556 7.027778 AGTAAAAGCCTTTTTGACACTAGTG 57.972 36.000 21.44 21.44 37.12 2.74
548 557 6.262496 GGAGTAAAAGCCTTTTTGACACTAGT 59.738 38.462 7.88 0.00 37.12 2.57
549 558 6.294010 GGGAGTAAAAGCCTTTTTGACACTAG 60.294 42.308 7.88 0.00 37.12 2.57
550 559 5.533528 GGGAGTAAAAGCCTTTTTGACACTA 59.466 40.000 7.88 0.00 37.12 2.74
551 560 4.341235 GGGAGTAAAAGCCTTTTTGACACT 59.659 41.667 7.88 5.31 37.12 3.55
552 561 4.341235 AGGGAGTAAAAGCCTTTTTGACAC 59.659 41.667 7.88 0.16 37.12 3.67
553 562 4.542697 AGGGAGTAAAAGCCTTTTTGACA 58.457 39.130 7.88 0.00 37.12 3.58
554 563 4.022242 GGAGGGAGTAAAAGCCTTTTTGAC 60.022 45.833 7.88 1.26 37.12 3.18
555 564 4.149598 GGAGGGAGTAAAAGCCTTTTTGA 58.850 43.478 7.88 0.00 37.12 2.69
556 565 3.057526 CGGAGGGAGTAAAAGCCTTTTTG 60.058 47.826 7.88 0.00 37.12 2.44
557 566 3.154710 CGGAGGGAGTAAAAGCCTTTTT 58.845 45.455 7.88 0.87 39.69 1.94
558 567 2.107726 ACGGAGGGAGTAAAAGCCTTTT 59.892 45.455 7.68 7.68 36.67 2.27
559 568 1.703513 ACGGAGGGAGTAAAAGCCTTT 59.296 47.619 0.00 0.00 0.00 3.11
560 569 1.359168 ACGGAGGGAGTAAAAGCCTT 58.641 50.000 0.00 0.00 0.00 4.35
561 570 1.278413 GAACGGAGGGAGTAAAAGCCT 59.722 52.381 0.00 0.00 0.00 4.58
562 571 1.678123 GGAACGGAGGGAGTAAAAGCC 60.678 57.143 0.00 0.00 0.00 4.35
563 572 1.278413 AGGAACGGAGGGAGTAAAAGC 59.722 52.381 0.00 0.00 0.00 3.51
564 573 4.813750 TTAGGAACGGAGGGAGTAAAAG 57.186 45.455 0.00 0.00 0.00 2.27
565 574 5.013391 ACATTTAGGAACGGAGGGAGTAAAA 59.987 40.000 0.00 0.00 0.00 1.52
566 575 4.533311 ACATTTAGGAACGGAGGGAGTAAA 59.467 41.667 0.00 0.00 0.00 2.01
567 576 4.098894 ACATTTAGGAACGGAGGGAGTAA 58.901 43.478 0.00 0.00 0.00 2.24
607 616 8.786826 ATACATCCGTATGTGGTTTATAATGG 57.213 34.615 3.56 0.00 45.99 3.16
614 623 7.764443 GCATCTATATACATCCGTATGTGGTTT 59.236 37.037 3.56 0.00 45.99 3.27
615 624 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
618 628 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
646 656 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
648 658 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
650 660 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
653 663 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
655 665 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
657 667 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
658 668 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
659 669 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
662 672 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
663 673 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
665 675 4.481368 AAATGGACTACATACGGAGCAA 57.519 40.909 0.00 0.00 39.40 3.91
667 677 4.982916 CACTAAATGGACTACATACGGAGC 59.017 45.833 0.00 0.00 39.40 4.70
669 679 6.778834 TTCACTAAATGGACTACATACGGA 57.221 37.500 0.00 0.00 39.40 4.69
670 680 7.926555 AGATTTCACTAAATGGACTACATACGG 59.073 37.037 0.00 0.00 39.40 4.02
675 685 9.031537 TGTAGAGATTTCACTAAATGGACTACA 57.968 33.333 0.00 0.00 38.08 2.74
676 686 9.871238 TTGTAGAGATTTCACTAAATGGACTAC 57.129 33.333 0.00 0.00 35.41 2.73
678 688 9.442047 CTTTGTAGAGATTTCACTAAATGGACT 57.558 33.333 0.00 0.00 35.41 3.85
680 690 9.436957 GTCTTTGTAGAGATTTCACTAAATGGA 57.563 33.333 0.00 0.00 35.41 3.41
681 691 9.442047 AGTCTTTGTAGAGATTTCACTAAATGG 57.558 33.333 0.00 0.00 35.41 3.16
695 706 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
700 711 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
707 718 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
708 719 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
710 721 3.958798 TCTACTCCCTCCGTTCCTAAATG 59.041 47.826 0.00 0.00 0.00 2.32
716 727 2.068834 TGATCTACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
717 728 4.467198 TTTTGATCTACTCCCTCCGTTC 57.533 45.455 0.00 0.00 0.00 3.95
721 732 6.427441 AGGAAATTTTTGATCTACTCCCTCC 58.573 40.000 0.00 0.00 0.00 4.30
735 746 7.254761 GCCATGTTTTTCTTCGAGGAAATTTTT 60.255 33.333 21.56 6.83 35.51 1.94
747 758 3.308530 CTTCACGGCCATGTTTTTCTTC 58.691 45.455 2.24 0.00 0.00 2.87
792 804 4.527038 TCTTTCCTTTTTCTCCTAGCTCGA 59.473 41.667 0.00 0.00 0.00 4.04
814 826 9.450807 CTTTCCATTTCCGTTATCATTTGTATC 57.549 33.333 0.00 0.00 0.00 2.24
816 828 7.094162 TGCTTTCCATTTCCGTTATCATTTGTA 60.094 33.333 0.00 0.00 0.00 2.41
817 833 6.099341 GCTTTCCATTTCCGTTATCATTTGT 58.901 36.000 0.00 0.00 0.00 2.83
957 973 2.140792 ACCGTTCTGCAGTGGGAGT 61.141 57.895 21.49 9.55 33.59 3.85
958 974 1.669115 CACCGTTCTGCAGTGGGAG 60.669 63.158 21.49 13.06 0.00 4.30
959 975 2.137528 TCACCGTTCTGCAGTGGGA 61.138 57.895 21.49 14.43 32.29 4.37
960 976 1.961277 GTCACCGTTCTGCAGTGGG 60.961 63.158 14.67 15.24 32.29 4.61
961 977 2.310233 CGTCACCGTTCTGCAGTGG 61.310 63.158 14.67 16.14 32.29 4.00
962 978 2.943345 GCGTCACCGTTCTGCAGTG 61.943 63.158 14.67 5.05 36.15 3.66
1023 1039 4.218635 TCGATCGAGGGAAGGAATAATCTG 59.781 45.833 15.15 0.00 0.00 2.90
1160 1187 4.670765 ACTTTCCTCGGAAGACTACCTAA 58.329 43.478 0.00 0.00 35.38 2.69
1169 1196 4.884247 ACAAGAACTACTTTCCTCGGAAG 58.116 43.478 0.00 0.00 36.61 3.46
1252 1279 0.319469 GATCAAGGAGCGGCTAGAGC 60.319 60.000 0.60 0.00 41.14 4.09
1271 1304 7.308435 AGAAATCTAAACAGAAAATTCGCCAG 58.692 34.615 0.00 0.00 0.00 4.85
1298 1331 3.181439 ACAACTGGAAAGGAAGGAGAAGG 60.181 47.826 0.00 0.00 0.00 3.46
1476 1512 4.697514 TCCTCTCTTGTTTGACAGAACAG 58.302 43.478 4.26 1.42 40.33 3.16
1490 1526 6.042437 AGGTTGCAAATCAAAAATCCTCTCTT 59.958 34.615 0.00 0.00 36.26 2.85
1500 1537 6.092092 CGACATGATAGGTTGCAAATCAAAA 58.908 36.000 14.53 0.00 36.26 2.44
1532 1569 1.084370 ACGCGCTGCTATTTCCTGAC 61.084 55.000 5.73 0.00 0.00 3.51
1533 1570 0.391130 AACGCGCTGCTATTTCCTGA 60.391 50.000 5.73 0.00 0.00 3.86
1534 1571 0.247814 CAACGCGCTGCTATTTCCTG 60.248 55.000 5.73 0.00 0.00 3.86
1535 1572 0.673644 ACAACGCGCTGCTATTTCCT 60.674 50.000 9.87 0.00 0.00 3.36
1541 1578 1.011968 CCACTAACAACGCGCTGCTA 61.012 55.000 9.87 0.36 0.00 3.49
1543 1580 1.837538 TTCCACTAACAACGCGCTGC 61.838 55.000 9.87 0.00 0.00 5.25
1544 1581 0.796312 ATTCCACTAACAACGCGCTG 59.204 50.000 5.73 7.11 0.00 5.18
1746 1787 1.485895 AGGATTCTCTTGAGCAGCTCC 59.514 52.381 20.16 1.50 0.00 4.70
1793 1834 0.538584 TGTGCAGCTCTCTATGTGGG 59.461 55.000 0.00 0.00 0.00 4.61
1956 1997 6.486993 GGTTCATATTATCCTCACCAAACTCC 59.513 42.308 0.00 0.00 0.00 3.85
1962 2003 5.376625 GCAAGGTTCATATTATCCTCACCA 58.623 41.667 0.00 0.00 0.00 4.17
1995 2036 1.646189 GCACTCCGTTCTCCTTCATC 58.354 55.000 0.00 0.00 0.00 2.92
2010 2051 4.578928 AGTTTCTTCCATTTGTAACGCACT 59.421 37.500 0.00 0.00 0.00 4.40
2342 2385 2.952310 ACCAGGCTGTCAGAAAAAGAAC 59.048 45.455 14.43 0.00 0.00 3.01
2528 2575 6.877322 GGAAAAGTGGAAAGTGTAGCATACTA 59.123 38.462 0.00 0.00 43.54 1.82
2574 2621 1.630369 TGGATCCACTTCCTGTCAAGG 59.370 52.381 11.44 0.00 46.06 3.61
2778 2825 2.859806 GCATTGCTGTGTGACAAACCTC 60.860 50.000 0.16 0.00 0.00 3.85
2808 2855 5.938438 AATTTGCGGCAAAATTGTGTAAT 57.062 30.435 29.43 9.19 38.12 1.89
2824 2871 7.547227 AGGAACACAATATAGGTGAAATTTGC 58.453 34.615 12.85 4.12 39.53 3.68
2939 2992 1.530323 TCGTCCTCGATGTCTGTTCA 58.470 50.000 0.00 0.00 41.35 3.18
3068 3121 0.179181 CACGGTCACAAGCATGATGC 60.179 55.000 9.89 9.89 45.46 3.91
3140 3194 2.957402 AGACTTGGTGAATGGCAAGA 57.043 45.000 0.00 0.00 0.00 3.02
3190 3244 3.564345 AAGTGCTCAGCTGGGGCAG 62.564 63.158 26.85 14.05 41.70 4.85
3217 3271 5.653255 ACAGATATTGTTTGCTCCCCTAT 57.347 39.130 0.00 0.00 36.31 2.57
3302 3358 9.902684 ATTACTTGATTTCTCATCAGAATCACT 57.097 29.630 0.00 0.00 38.50 3.41
3322 3378 8.677148 AGTTAACTGTTCATGTGTCATTACTT 57.323 30.769 7.48 0.00 0.00 2.24
3329 3385 8.583810 TGTTAGTAGTTAACTGTTCATGTGTC 57.416 34.615 18.56 0.00 41.82 3.67
3359 3418 9.892444 TCATTTCCCCTTACTGATTACTATCTA 57.108 33.333 0.00 0.00 0.00 1.98
3360 3419 8.798975 TCATTTCCCCTTACTGATTACTATCT 57.201 34.615 0.00 0.00 0.00 1.98
3361 3420 9.442047 CATCATTTCCCCTTACTGATTACTATC 57.558 37.037 0.00 0.00 0.00 2.08
3362 3421 9.170890 TCATCATTTCCCCTTACTGATTACTAT 57.829 33.333 0.00 0.00 0.00 2.12
3363 3422 8.561536 TCATCATTTCCCCTTACTGATTACTA 57.438 34.615 0.00 0.00 0.00 1.82
3364 3423 7.451731 TCATCATTTCCCCTTACTGATTACT 57.548 36.000 0.00 0.00 0.00 2.24
3365 3424 8.697507 AATCATCATTTCCCCTTACTGATTAC 57.302 34.615 0.00 0.00 32.09 1.89
3367 3426 8.506083 ACTAATCATCATTTCCCCTTACTGATT 58.494 33.333 0.00 0.00 36.42 2.57
3368 3427 8.050316 ACTAATCATCATTTCCCCTTACTGAT 57.950 34.615 0.00 0.00 0.00 2.90
3369 3428 7.451731 ACTAATCATCATTTCCCCTTACTGA 57.548 36.000 0.00 0.00 0.00 3.41
3370 3429 9.627123 TTTACTAATCATCATTTCCCCTTACTG 57.373 33.333 0.00 0.00 0.00 2.74
3371 3430 9.853177 CTTTACTAATCATCATTTCCCCTTACT 57.147 33.333 0.00 0.00 0.00 2.24
3372 3431 9.847224 TCTTTACTAATCATCATTTCCCCTTAC 57.153 33.333 0.00 0.00 0.00 2.34
3404 3463 9.413734 TCAAGAAGATGAGAGTAGAATACATCA 57.586 33.333 0.00 0.00 46.26 3.07
3436 3495 8.940952 CGAAGTTCTCCTTTCTGAAATTATCTT 58.059 33.333 2.88 4.70 31.92 2.40
3437 3496 8.097662 ACGAAGTTCTCCTTTCTGAAATTATCT 58.902 33.333 2.88 0.00 37.78 1.98
3438 3497 8.257830 ACGAAGTTCTCCTTTCTGAAATTATC 57.742 34.615 2.88 0.00 37.78 1.75
3458 3517 8.689251 TGATACTAGTCTGAAATTCAACGAAG 57.311 34.615 0.00 5.15 0.00 3.79
3459 3518 8.922676 GTTGATACTAGTCTGAAATTCAACGAA 58.077 33.333 0.00 0.00 34.40 3.85
3460 3519 8.304596 AGTTGATACTAGTCTGAAATTCAACGA 58.695 33.333 0.00 0.00 43.84 3.85
3461 3520 8.467402 AGTTGATACTAGTCTGAAATTCAACG 57.533 34.615 0.00 0.00 43.84 4.10
3484 3543 9.739276 TCTGATGTGGAAATAAAAGTCAATAGT 57.261 29.630 0.00 0.00 0.00 2.12
3487 3546 8.472413 CCATCTGATGTGGAAATAAAAGTCAAT 58.528 33.333 15.95 0.00 39.12 2.57
3488 3547 7.669304 TCCATCTGATGTGGAAATAAAAGTCAA 59.331 33.333 15.95 0.00 42.56 3.18
3489 3548 7.174413 TCCATCTGATGTGGAAATAAAAGTCA 58.826 34.615 15.95 0.00 42.56 3.41
3490 3549 7.630242 TCCATCTGATGTGGAAATAAAAGTC 57.370 36.000 15.95 0.00 42.56 3.01
3501 3560 3.614176 CGCGTTATATCCATCTGATGTGG 59.386 47.826 15.95 3.99 38.11 4.17
3502 3561 4.237724 ACGCGTTATATCCATCTGATGTG 58.762 43.478 5.58 8.08 34.76 3.21
3503 3562 4.521130 ACGCGTTATATCCATCTGATGT 57.479 40.909 5.58 1.75 34.76 3.06
3504 3563 6.093404 AGTTACGCGTTATATCCATCTGATG 58.907 40.000 20.78 10.71 34.76 3.07
3505 3564 6.268825 AGTTACGCGTTATATCCATCTGAT 57.731 37.500 20.78 0.00 37.49 2.90
3506 3565 5.700722 AGTTACGCGTTATATCCATCTGA 57.299 39.130 20.78 0.00 0.00 3.27
3507 3566 6.764877 AAAGTTACGCGTTATATCCATCTG 57.235 37.500 20.78 0.00 0.00 2.90
3508 3567 8.876275 TTTAAAGTTACGCGTTATATCCATCT 57.124 30.769 20.78 0.00 0.00 2.90
3509 3568 9.919348 TTTTTAAAGTTACGCGTTATATCCATC 57.081 29.630 20.78 0.00 0.00 3.51
3541 3600 8.817876 GCAGAGACCTACCCTTATCTAAATAAT 58.182 37.037 0.00 0.00 0.00 1.28
3542 3601 7.787904 TGCAGAGACCTACCCTTATCTAAATAA 59.212 37.037 0.00 0.00 0.00 1.40
3543 3602 7.302948 TGCAGAGACCTACCCTTATCTAAATA 58.697 38.462 0.00 0.00 0.00 1.40
3544 3603 6.143915 TGCAGAGACCTACCCTTATCTAAAT 58.856 40.000 0.00 0.00 0.00 1.40
3545 3604 5.525484 TGCAGAGACCTACCCTTATCTAAA 58.475 41.667 0.00 0.00 0.00 1.85
3546 3605 5.138758 TGCAGAGACCTACCCTTATCTAA 57.861 43.478 0.00 0.00 0.00 2.10
3547 3606 4.808767 TGCAGAGACCTACCCTTATCTA 57.191 45.455 0.00 0.00 0.00 1.98
3548 3607 3.689872 TGCAGAGACCTACCCTTATCT 57.310 47.619 0.00 0.00 0.00 1.98
3549 3608 4.965200 ATTGCAGAGACCTACCCTTATC 57.035 45.455 0.00 0.00 0.00 1.75
3550 3609 4.721776 TGAATTGCAGAGACCTACCCTTAT 59.278 41.667 0.00 0.00 0.00 1.73
3551 3610 4.101114 TGAATTGCAGAGACCTACCCTTA 58.899 43.478 0.00 0.00 0.00 2.69
3552 3611 2.912956 TGAATTGCAGAGACCTACCCTT 59.087 45.455 0.00 0.00 0.00 3.95
3553 3612 2.551270 TGAATTGCAGAGACCTACCCT 58.449 47.619 0.00 0.00 0.00 4.34
3554 3613 3.567478 ATGAATTGCAGAGACCTACCC 57.433 47.619 0.00 0.00 0.00 3.69
3555 3614 5.415701 TCAAAATGAATTGCAGAGACCTACC 59.584 40.000 0.00 0.00 0.00 3.18
3556 3615 6.500684 TCAAAATGAATTGCAGAGACCTAC 57.499 37.500 0.00 0.00 0.00 3.18
3557 3616 7.448161 TCTTTCAAAATGAATTGCAGAGACCTA 59.552 33.333 0.00 0.00 36.11 3.08
3558 3617 6.266103 TCTTTCAAAATGAATTGCAGAGACCT 59.734 34.615 0.00 0.00 36.11 3.85
3559 3618 6.449698 TCTTTCAAAATGAATTGCAGAGACC 58.550 36.000 0.00 0.00 36.11 3.85
3560 3619 7.864379 TCTTCTTTCAAAATGAATTGCAGAGAC 59.136 33.333 0.00 0.00 36.11 3.36
3561 3620 7.944061 TCTTCTTTCAAAATGAATTGCAGAGA 58.056 30.769 0.00 0.00 36.11 3.10
3562 3621 8.583810 TTCTTCTTTCAAAATGAATTGCAGAG 57.416 30.769 0.00 0.00 36.11 3.35
3563 3622 8.945481 TTTCTTCTTTCAAAATGAATTGCAGA 57.055 26.923 0.00 0.00 36.11 4.26
3564 3623 9.991388 TTTTTCTTCTTTCAAAATGAATTGCAG 57.009 25.926 0.00 0.00 36.11 4.41
3565 3624 9.771915 GTTTTTCTTCTTTCAAAATGAATTGCA 57.228 25.926 0.00 0.00 36.11 4.08
3566 3625 8.936936 CGTTTTTCTTCTTTCAAAATGAATTGC 58.063 29.630 0.00 0.00 36.11 3.56
3567 3626 8.936936 GCGTTTTTCTTCTTTCAAAATGAATTG 58.063 29.630 0.00 0.00 36.11 2.32
3568 3627 8.663911 TGCGTTTTTCTTCTTTCAAAATGAATT 58.336 25.926 0.00 0.00 36.11 2.17
3569 3628 8.116136 GTGCGTTTTTCTTCTTTCAAAATGAAT 58.884 29.630 0.00 0.00 36.11 2.57
3570 3629 7.116948 TGTGCGTTTTTCTTCTTTCAAAATGAA 59.883 29.630 0.00 0.00 34.03 2.57
3571 3630 6.587990 TGTGCGTTTTTCTTCTTTCAAAATGA 59.412 30.769 0.00 0.00 30.90 2.57
3572 3631 6.678245 GTGTGCGTTTTTCTTCTTTCAAAATG 59.322 34.615 0.00 0.00 32.01 2.32
3573 3632 6.453659 CGTGTGCGTTTTTCTTCTTTCAAAAT 60.454 34.615 0.00 0.00 0.00 1.82
3574 3633 5.164138 CGTGTGCGTTTTTCTTCTTTCAAAA 60.164 36.000 0.00 0.00 0.00 2.44
3575 3634 4.322274 CGTGTGCGTTTTTCTTCTTTCAAA 59.678 37.500 0.00 0.00 0.00 2.69
3576 3635 3.849145 CGTGTGCGTTTTTCTTCTTTCAA 59.151 39.130 0.00 0.00 0.00 2.69
3577 3636 3.421741 CGTGTGCGTTTTTCTTCTTTCA 58.578 40.909 0.00 0.00 0.00 2.69
3593 3652 3.345808 CTTCCGGCCACACGTGTG 61.346 66.667 36.13 36.13 45.23 3.82
3603 3662 2.703675 ATCCATGATGGGCTTCCGGC 62.704 60.000 12.26 0.00 38.32 6.13
3604 3663 0.692476 TATCCATGATGGGCTTCCGG 59.308 55.000 12.26 0.00 38.32 5.14
3605 3664 1.947678 GCTATCCATGATGGGCTTCCG 60.948 57.143 12.26 0.00 38.32 4.30
3606 3665 1.353694 AGCTATCCATGATGGGCTTCC 59.646 52.381 12.26 0.00 38.32 3.46
3607 3666 2.875094 AGCTATCCATGATGGGCTTC 57.125 50.000 12.26 0.00 38.32 3.86
3608 3667 3.228453 CAAAGCTATCCATGATGGGCTT 58.772 45.455 17.21 17.21 40.78 4.35
3609 3668 2.176364 ACAAAGCTATCCATGATGGGCT 59.824 45.455 12.26 9.73 38.32 5.19
3610 3669 2.590821 ACAAAGCTATCCATGATGGGC 58.409 47.619 12.26 7.36 38.32 5.36
3611 3670 5.593909 TGTAAACAAAGCTATCCATGATGGG 59.406 40.000 12.26 0.00 38.32 4.00
3612 3671 6.698008 TGTAAACAAAGCTATCCATGATGG 57.302 37.500 4.74 4.74 39.43 3.51
3613 3672 7.073883 CGATGTAAACAAAGCTATCCATGATG 58.926 38.462 0.00 0.00 0.00 3.07
3614 3673 6.767902 ACGATGTAAACAAAGCTATCCATGAT 59.232 34.615 0.00 0.00 0.00 2.45
3615 3674 6.112734 ACGATGTAAACAAAGCTATCCATGA 58.887 36.000 0.00 0.00 0.00 3.07
3616 3675 6.363577 ACGATGTAAACAAAGCTATCCATG 57.636 37.500 0.00 0.00 0.00 3.66
3617 3676 6.597672 TGAACGATGTAAACAAAGCTATCCAT 59.402 34.615 0.00 0.00 0.00 3.41
3618 3677 5.935206 TGAACGATGTAAACAAAGCTATCCA 59.065 36.000 0.00 0.00 0.00 3.41
3619 3678 6.417191 TGAACGATGTAAACAAAGCTATCC 57.583 37.500 0.00 0.00 0.00 2.59
3620 3679 6.412072 GCATGAACGATGTAAACAAAGCTATC 59.588 38.462 0.00 0.00 34.14 2.08
3621 3680 6.128035 TGCATGAACGATGTAAACAAAGCTAT 60.128 34.615 0.00 0.00 34.14 2.97
3622 3681 5.180304 TGCATGAACGATGTAAACAAAGCTA 59.820 36.000 0.00 0.00 34.14 3.32
3623 3682 4.023279 TGCATGAACGATGTAAACAAAGCT 60.023 37.500 0.00 0.00 34.14 3.74
3624 3683 4.225984 TGCATGAACGATGTAAACAAAGC 58.774 39.130 0.00 0.00 34.14 3.51
3625 3684 6.932901 ATTGCATGAACGATGTAAACAAAG 57.067 33.333 0.00 0.00 39.73 2.77
3626 3685 7.862873 TGTAATTGCATGAACGATGTAAACAAA 59.137 29.630 0.00 0.00 39.73 2.83
3627 3686 7.324856 GTGTAATTGCATGAACGATGTAAACAA 59.675 33.333 0.00 0.00 39.73 2.83
3628 3687 6.799441 GTGTAATTGCATGAACGATGTAAACA 59.201 34.615 0.00 0.00 39.73 2.83
3629 3688 6.799441 TGTGTAATTGCATGAACGATGTAAAC 59.201 34.615 0.00 0.00 39.73 2.01
3630 3689 6.903419 TGTGTAATTGCATGAACGATGTAAA 58.097 32.000 0.00 0.00 39.73 2.01
3631 3690 6.487689 TGTGTAATTGCATGAACGATGTAA 57.512 33.333 0.00 0.00 40.47 2.41
3632 3691 6.676237 ATGTGTAATTGCATGAACGATGTA 57.324 33.333 0.00 0.00 34.14 2.29
3633 3692 5.565592 ATGTGTAATTGCATGAACGATGT 57.434 34.783 0.00 0.00 34.14 3.06
3634 3693 6.018016 TCCTATGTGTAATTGCATGAACGATG 60.018 38.462 0.00 0.00 34.84 3.84
3635 3694 6.054941 TCCTATGTGTAATTGCATGAACGAT 58.945 36.000 0.00 0.00 0.00 3.73
3636 3695 5.423886 TCCTATGTGTAATTGCATGAACGA 58.576 37.500 0.00 0.00 0.00 3.85
3637 3696 5.733226 TCCTATGTGTAATTGCATGAACG 57.267 39.130 0.00 0.00 0.00 3.95
3638 3697 6.473455 GCTTTCCTATGTGTAATTGCATGAAC 59.527 38.462 0.00 0.00 0.00 3.18
3639 3698 6.377996 AGCTTTCCTATGTGTAATTGCATGAA 59.622 34.615 0.00 0.00 0.00 2.57
3640 3699 5.887598 AGCTTTCCTATGTGTAATTGCATGA 59.112 36.000 0.00 0.00 0.00 3.07
3641 3700 6.140303 AGCTTTCCTATGTGTAATTGCATG 57.860 37.500 0.00 0.00 0.00 4.06
3642 3701 5.887598 TGAGCTTTCCTATGTGTAATTGCAT 59.112 36.000 0.00 0.00 0.00 3.96
3643 3702 5.252547 TGAGCTTTCCTATGTGTAATTGCA 58.747 37.500 0.00 0.00 0.00 4.08
3644 3703 5.220931 CCTGAGCTTTCCTATGTGTAATTGC 60.221 44.000 0.00 0.00 0.00 3.56
3645 3704 5.297776 CCCTGAGCTTTCCTATGTGTAATTG 59.702 44.000 0.00 0.00 0.00 2.32
3646 3705 5.191722 TCCCTGAGCTTTCCTATGTGTAATT 59.808 40.000 0.00 0.00 0.00 1.40
3647 3706 4.721776 TCCCTGAGCTTTCCTATGTGTAAT 59.278 41.667 0.00 0.00 0.00 1.89
3648 3707 4.101114 TCCCTGAGCTTTCCTATGTGTAA 58.899 43.478 0.00 0.00 0.00 2.41
3649 3708 3.706594 CTCCCTGAGCTTTCCTATGTGTA 59.293 47.826 0.00 0.00 0.00 2.90
3650 3709 2.503356 CTCCCTGAGCTTTCCTATGTGT 59.497 50.000 0.00 0.00 0.00 3.72
3651 3710 3.191078 CTCCCTGAGCTTTCCTATGTG 57.809 52.381 0.00 0.00 0.00 3.21
3663 3722 2.738000 CGTCTTTGATGAGCTCCCTGAG 60.738 54.545 12.15 3.20 0.00 3.35
3664 3723 1.205655 CGTCTTTGATGAGCTCCCTGA 59.794 52.381 12.15 0.00 0.00 3.86
3665 3724 1.205655 TCGTCTTTGATGAGCTCCCTG 59.794 52.381 12.15 0.00 0.00 4.45
3666 3725 1.205893 GTCGTCTTTGATGAGCTCCCT 59.794 52.381 12.15 0.00 0.00 4.20
3667 3726 1.066858 TGTCGTCTTTGATGAGCTCCC 60.067 52.381 12.15 3.62 0.00 4.30
3668 3727 2.370281 TGTCGTCTTTGATGAGCTCC 57.630 50.000 12.15 0.00 0.00 4.70
3669 3728 3.494626 TGTTTGTCGTCTTTGATGAGCTC 59.505 43.478 6.82 6.82 0.00 4.09
3670 3729 3.466836 TGTTTGTCGTCTTTGATGAGCT 58.533 40.909 0.00 0.00 0.00 4.09
3671 3730 3.878086 TGTTTGTCGTCTTTGATGAGC 57.122 42.857 0.00 0.00 0.00 4.26
3672 3731 5.172053 GCTTTTGTTTGTCGTCTTTGATGAG 59.828 40.000 0.00 0.00 0.00 2.90
3673 3732 5.034152 GCTTTTGTTTGTCGTCTTTGATGA 58.966 37.500 0.00 0.00 0.00 2.92
3674 3733 5.036737 AGCTTTTGTTTGTCGTCTTTGATG 58.963 37.500 0.00 0.00 0.00 3.07
3675 3734 5.066505 AGAGCTTTTGTTTGTCGTCTTTGAT 59.933 36.000 0.00 0.00 0.00 2.57
3676 3735 4.394920 AGAGCTTTTGTTTGTCGTCTTTGA 59.605 37.500 0.00 0.00 0.00 2.69
3677 3736 4.662145 AGAGCTTTTGTTTGTCGTCTTTG 58.338 39.130 0.00 0.00 0.00 2.77
3678 3737 4.394920 TGAGAGCTTTTGTTTGTCGTCTTT 59.605 37.500 0.00 0.00 0.00 2.52
3679 3738 3.938963 TGAGAGCTTTTGTTTGTCGTCTT 59.061 39.130 0.00 0.00 0.00 3.01
3680 3739 3.531538 TGAGAGCTTTTGTTTGTCGTCT 58.468 40.909 0.00 0.00 0.00 4.18
3681 3740 3.944422 TGAGAGCTTTTGTTTGTCGTC 57.056 42.857 0.00 0.00 0.00 4.20
3682 3741 4.695217 TTTGAGAGCTTTTGTTTGTCGT 57.305 36.364 0.00 0.00 0.00 4.34
3683 3742 6.430451 AGTATTTGAGAGCTTTTGTTTGTCG 58.570 36.000 0.00 0.00 0.00 4.35
3684 3743 9.170584 GTTAGTATTTGAGAGCTTTTGTTTGTC 57.829 33.333 0.00 0.00 0.00 3.18
3685 3744 8.903820 AGTTAGTATTTGAGAGCTTTTGTTTGT 58.096 29.630 0.00 0.00 0.00 2.83
3694 3753 9.979578 CATCTGATTAGTTAGTATTTGAGAGCT 57.020 33.333 0.00 0.00 0.00 4.09
3695 3754 8.707839 GCATCTGATTAGTTAGTATTTGAGAGC 58.292 37.037 0.00 0.00 0.00 4.09
3696 3755 9.755804 TGCATCTGATTAGTTAGTATTTGAGAG 57.244 33.333 0.00 0.00 0.00 3.20
3699 3758 9.665719 TGTTGCATCTGATTAGTTAGTATTTGA 57.334 29.630 0.00 0.00 0.00 2.69
3700 3759 9.926751 CTGTTGCATCTGATTAGTTAGTATTTG 57.073 33.333 0.00 0.00 0.00 2.32
3701 3760 9.113838 CCTGTTGCATCTGATTAGTTAGTATTT 57.886 33.333 3.43 0.00 0.00 1.40
3702 3761 7.227512 GCCTGTTGCATCTGATTAGTTAGTATT 59.772 37.037 3.43 0.00 40.77 1.89
3703 3762 6.708054 GCCTGTTGCATCTGATTAGTTAGTAT 59.292 38.462 3.43 0.00 40.77 2.12
3704 3763 6.049149 GCCTGTTGCATCTGATTAGTTAGTA 58.951 40.000 3.43 0.00 40.77 1.82
3705 3764 4.878397 GCCTGTTGCATCTGATTAGTTAGT 59.122 41.667 3.43 0.00 40.77 2.24
3706 3765 5.415415 GCCTGTTGCATCTGATTAGTTAG 57.585 43.478 3.43 0.00 40.77 2.34
3720 3779 3.691609 AGAACTAGCTAATTGCCTGTTGC 59.308 43.478 0.00 0.00 44.23 4.17
3721 3780 6.763135 TCATAGAACTAGCTAATTGCCTGTTG 59.237 38.462 0.00 0.00 44.23 3.33
3722 3781 6.763610 GTCATAGAACTAGCTAATTGCCTGTT 59.236 38.462 0.00 0.00 44.23 3.16
3723 3782 6.127054 TGTCATAGAACTAGCTAATTGCCTGT 60.127 38.462 0.00 0.00 44.23 4.00
3724 3783 6.283694 TGTCATAGAACTAGCTAATTGCCTG 58.716 40.000 0.00 0.00 44.23 4.85
3725 3784 6.325028 TCTGTCATAGAACTAGCTAATTGCCT 59.675 38.462 0.00 0.00 35.72 4.75
3726 3785 6.516718 TCTGTCATAGAACTAGCTAATTGCC 58.483 40.000 0.00 0.00 35.72 4.52
3727 3786 8.600449 AATCTGTCATAGAACTAGCTAATTGC 57.400 34.615 0.00 0.00 39.30 3.56
3772 3831 8.526147 CCTTGGATGATTTTTCTCATGTAAAGT 58.474 33.333 0.00 0.00 36.01 2.66
3773 3832 8.742777 TCCTTGGATGATTTTTCTCATGTAAAG 58.257 33.333 0.00 0.00 36.01 1.85
3774 3833 8.648698 TCCTTGGATGATTTTTCTCATGTAAA 57.351 30.769 0.00 0.00 36.01 2.01
3775 3834 8.827832 ATCCTTGGATGATTTTTCTCATGTAA 57.172 30.769 0.72 0.00 36.01 2.41
3776 3835 8.054572 TGATCCTTGGATGATTTTTCTCATGTA 58.945 33.333 6.92 0.00 36.01 2.29
3777 3836 6.893554 TGATCCTTGGATGATTTTTCTCATGT 59.106 34.615 6.92 0.00 36.01 3.21
3778 3837 7.342769 TGATCCTTGGATGATTTTTCTCATG 57.657 36.000 6.92 0.00 36.01 3.07
3779 3838 7.966339 TTGATCCTTGGATGATTTTTCTCAT 57.034 32.000 6.92 0.00 38.57 2.90
3780 3839 7.779754 TTTGATCCTTGGATGATTTTTCTCA 57.220 32.000 6.92 0.00 0.00 3.27
3781 3840 8.309656 AGTTTTGATCCTTGGATGATTTTTCTC 58.690 33.333 6.92 0.00 0.00 2.87
3782 3841 8.198807 AGTTTTGATCCTTGGATGATTTTTCT 57.801 30.769 6.92 0.00 0.00 2.52
3783 3842 8.837788 AAGTTTTGATCCTTGGATGATTTTTC 57.162 30.769 6.92 0.00 0.00 2.29
3784 3843 9.276590 GAAAGTTTTGATCCTTGGATGATTTTT 57.723 29.630 6.92 1.16 0.00 1.94
3785 3844 8.654094 AGAAAGTTTTGATCCTTGGATGATTTT 58.346 29.630 6.92 0.87 0.00 1.82
3786 3845 8.092687 CAGAAAGTTTTGATCCTTGGATGATTT 58.907 33.333 6.92 0.00 0.00 2.17
3787 3846 7.452501 TCAGAAAGTTTTGATCCTTGGATGATT 59.547 33.333 6.92 0.00 0.00 2.57
3788 3847 6.950041 TCAGAAAGTTTTGATCCTTGGATGAT 59.050 34.615 6.92 0.00 0.00 2.45
3789 3848 6.207417 GTCAGAAAGTTTTGATCCTTGGATGA 59.793 38.462 6.92 0.00 0.00 2.92
3790 3849 6.385033 GTCAGAAAGTTTTGATCCTTGGATG 58.615 40.000 6.92 0.00 0.00 3.51
3791 3850 5.182001 CGTCAGAAAGTTTTGATCCTTGGAT 59.818 40.000 1.18 1.18 0.00 3.41
3792 3851 4.515191 CGTCAGAAAGTTTTGATCCTTGGA 59.485 41.667 0.00 0.00 0.00 3.53
3793 3852 4.787598 CGTCAGAAAGTTTTGATCCTTGG 58.212 43.478 0.00 0.00 0.00 3.61
3794 3853 4.222114 GCGTCAGAAAGTTTTGATCCTTG 58.778 43.478 0.00 0.00 0.00 3.61
3795 3854 3.253432 GGCGTCAGAAAGTTTTGATCCTT 59.747 43.478 0.00 0.00 0.00 3.36
3796 3855 2.814336 GGCGTCAGAAAGTTTTGATCCT 59.186 45.455 0.00 0.00 0.00 3.24
3797 3856 2.095212 GGGCGTCAGAAAGTTTTGATCC 60.095 50.000 0.00 2.67 0.00 3.36
3798 3857 2.814336 AGGGCGTCAGAAAGTTTTGATC 59.186 45.455 0.00 0.00 0.00 2.92
3799 3858 2.554032 CAGGGCGTCAGAAAGTTTTGAT 59.446 45.455 0.00 0.00 0.00 2.57
3800 3859 1.946768 CAGGGCGTCAGAAAGTTTTGA 59.053 47.619 0.00 0.00 0.00 2.69
3801 3860 1.600413 GCAGGGCGTCAGAAAGTTTTG 60.600 52.381 0.00 0.00 0.00 2.44
3802 3861 0.668535 GCAGGGCGTCAGAAAGTTTT 59.331 50.000 0.00 0.00 0.00 2.43
3803 3862 1.172812 GGCAGGGCGTCAGAAAGTTT 61.173 55.000 0.00 0.00 0.00 2.66
3804 3863 1.600916 GGCAGGGCGTCAGAAAGTT 60.601 57.895 0.00 0.00 0.00 2.66
3805 3864 2.032681 GGCAGGGCGTCAGAAAGT 59.967 61.111 0.00 0.00 0.00 2.66
3806 3865 2.747855 GGGCAGGGCGTCAGAAAG 60.748 66.667 0.00 0.00 0.00 2.62
3807 3866 3.249189 AGGGCAGGGCGTCAGAAA 61.249 61.111 0.00 0.00 0.00 2.52
3808 3867 4.020617 CAGGGCAGGGCGTCAGAA 62.021 66.667 0.00 0.00 0.00 3.02
3821 3880 4.161295 TTCGATCGCTGGCCAGGG 62.161 66.667 37.31 37.31 42.08 4.45
3822 3881 2.587194 CTTCGATCGCTGGCCAGG 60.587 66.667 33.46 22.73 0.00 4.45
3823 3882 3.267860 GCTTCGATCGCTGGCCAG 61.268 66.667 29.34 29.34 0.00 4.85
3824 3883 4.081185 TGCTTCGATCGCTGGCCA 62.081 61.111 11.09 4.71 0.00 5.36
3825 3884 3.267860 CTGCTTCGATCGCTGGCC 61.268 66.667 11.09 0.00 0.00 5.36
3826 3885 2.202797 TCTGCTTCGATCGCTGGC 60.203 61.111 11.09 14.16 0.00 4.85
3827 3886 0.382158 TACTCTGCTTCGATCGCTGG 59.618 55.000 11.09 3.87 0.00 4.85
3828 3887 2.194800 TTACTCTGCTTCGATCGCTG 57.805 50.000 11.09 6.53 0.00 5.18
3829 3888 2.621055 AGATTACTCTGCTTCGATCGCT 59.379 45.455 11.09 0.00 0.00 4.93
3830 3889 2.723658 CAGATTACTCTGCTTCGATCGC 59.276 50.000 11.09 0.00 42.36 4.58
3841 3900 6.943899 AGGGAAGAGAAAACAGATTACTCT 57.056 37.500 0.00 0.00 39.21 3.24
3842 3901 6.937465 ACAAGGGAAGAGAAAACAGATTACTC 59.063 38.462 0.00 0.00 0.00 2.59
3843 3902 6.842676 ACAAGGGAAGAGAAAACAGATTACT 58.157 36.000 0.00 0.00 0.00 2.24
3844 3903 7.511959 AACAAGGGAAGAGAAAACAGATTAC 57.488 36.000 0.00 0.00 0.00 1.89
3845 3904 8.533569 AAAACAAGGGAAGAGAAAACAGATTA 57.466 30.769 0.00 0.00 0.00 1.75
3846 3905 7.423844 AAAACAAGGGAAGAGAAAACAGATT 57.576 32.000 0.00 0.00 0.00 2.40
3847 3906 7.124147 TGAAAAACAAGGGAAGAGAAAACAGAT 59.876 33.333 0.00 0.00 0.00 2.90
3848 3907 6.435904 TGAAAAACAAGGGAAGAGAAAACAGA 59.564 34.615 0.00 0.00 0.00 3.41
3849 3908 6.630071 TGAAAAACAAGGGAAGAGAAAACAG 58.370 36.000 0.00 0.00 0.00 3.16
3850 3909 6.597832 TGAAAAACAAGGGAAGAGAAAACA 57.402 33.333 0.00 0.00 0.00 2.83
3864 3923 6.506147 CATCACTGACCATCTTGAAAAACAA 58.494 36.000 0.00 0.00 36.97 2.83
3865 3924 5.507817 GCATCACTGACCATCTTGAAAAACA 60.508 40.000 0.00 0.00 0.00 2.83
3866 3925 4.919754 GCATCACTGACCATCTTGAAAAAC 59.080 41.667 0.00 0.00 0.00 2.43
3867 3926 4.320421 CGCATCACTGACCATCTTGAAAAA 60.320 41.667 0.00 0.00 0.00 1.94
3868 3927 3.189080 CGCATCACTGACCATCTTGAAAA 59.811 43.478 0.00 0.00 0.00 2.29
3869 3928 2.743664 CGCATCACTGACCATCTTGAAA 59.256 45.455 0.00 0.00 0.00 2.69
3870 3929 2.349590 CGCATCACTGACCATCTTGAA 58.650 47.619 0.00 0.00 0.00 2.69
3871 3930 1.405933 CCGCATCACTGACCATCTTGA 60.406 52.381 0.00 0.00 0.00 3.02
3872 3931 1.012086 CCGCATCACTGACCATCTTG 58.988 55.000 0.00 0.00 0.00 3.02
3873 3932 0.107508 CCCGCATCACTGACCATCTT 60.108 55.000 0.00 0.00 0.00 2.40
3874 3933 1.524002 CCCGCATCACTGACCATCT 59.476 57.895 0.00 0.00 0.00 2.90
3875 3934 2.182842 GCCCGCATCACTGACCATC 61.183 63.158 0.00 0.00 0.00 3.51
3876 3935 2.124570 GCCCGCATCACTGACCAT 60.125 61.111 0.00 0.00 0.00 3.55
3877 3936 3.321648 AGCCCGCATCACTGACCA 61.322 61.111 0.00 0.00 0.00 4.02
3878 3937 2.821366 CAGCCCGCATCACTGACC 60.821 66.667 0.00 0.00 33.10 4.02
3879 3938 2.821366 CCAGCCCGCATCACTGAC 60.821 66.667 0.00 0.00 33.10 3.51
3880 3939 4.783621 GCCAGCCCGCATCACTGA 62.784 66.667 0.00 0.00 33.10 3.41
3884 3943 4.657408 TTGTGCCAGCCCGCATCA 62.657 61.111 0.00 0.00 41.70 3.07
3885 3944 3.818787 CTTGTGCCAGCCCGCATC 61.819 66.667 0.00 0.00 41.70 3.91
3886 3945 3.866379 TTCTTGTGCCAGCCCGCAT 62.866 57.895 0.00 0.00 41.70 4.73
3887 3946 4.577677 TTCTTGTGCCAGCCCGCA 62.578 61.111 0.00 0.00 36.08 5.69
3888 3947 3.741476 CTTCTTGTGCCAGCCCGC 61.741 66.667 0.00 0.00 0.00 6.13
3889 3948 3.741476 GCTTCTTGTGCCAGCCCG 61.741 66.667 0.00 0.00 0.00 6.13
3890 3949 2.282745 AGCTTCTTGTGCCAGCCC 60.283 61.111 0.00 0.00 33.73 5.19
3891 3950 1.303155 AGAGCTTCTTGTGCCAGCC 60.303 57.895 0.00 0.00 33.73 4.85
3892 3951 1.874562 CAGAGCTTCTTGTGCCAGC 59.125 57.895 0.00 0.00 0.00 4.85
3893 3952 0.605860 AGCAGAGCTTCTTGTGCCAG 60.606 55.000 0.00 0.00 33.89 4.85
3894 3953 0.179009 AAGCAGAGCTTCTTGTGCCA 60.179 50.000 0.00 0.00 46.77 4.92
3895 3954 2.638744 AAGCAGAGCTTCTTGTGCC 58.361 52.632 0.00 0.00 46.77 5.01
3910 3969 6.158598 TGTTCTTGCAGAATTAATTGGAAGC 58.841 36.000 13.64 9.12 41.00 3.86
4116 4267 7.755591 TCTACTTTGAAATACATACGACGAGT 58.244 34.615 0.00 0.00 0.00 4.18
4117 4268 8.610855 TTCTACTTTGAAATACATACGACGAG 57.389 34.615 0.00 0.00 0.00 4.18
4118 4269 8.853345 GTTTCTACTTTGAAATACATACGACGA 58.147 33.333 0.00 0.00 38.09 4.20
4119 4270 8.857216 AGTTTCTACTTTGAAATACATACGACG 58.143 33.333 0.00 0.00 38.09 5.12
4120 4271 9.953825 CAGTTTCTACTTTGAAATACATACGAC 57.046 33.333 0.00 0.00 38.09 4.34
4121 4272 9.146984 CCAGTTTCTACTTTGAAATACATACGA 57.853 33.333 0.00 0.00 38.09 3.43
4122 4273 8.932791 ACCAGTTTCTACTTTGAAATACATACG 58.067 33.333 0.00 0.00 38.09 3.06
4135 4286 5.652452 ACAAGCTTTTCACCAGTTTCTACTT 59.348 36.000 0.00 0.00 30.26 2.24
4144 4295 5.350633 TGATTTGAACAAGCTTTTCACCAG 58.649 37.500 17.88 0.89 32.65 4.00
4166 4317 3.188254 TCAGTATGCGTCACCACATTTTG 59.812 43.478 0.00 0.00 34.76 2.44
4179 4330 3.367327 GCAGCTATCTTGATCAGTATGCG 59.633 47.826 0.00 0.00 34.76 4.73
4220 4377 2.428890 CTGACAGAGGATGGTGGACTAC 59.571 54.545 0.00 0.00 0.00 2.73
4231 4388 2.160205 CTTCGTACCACTGACAGAGGA 58.840 52.381 23.84 6.47 30.04 3.71
4232 4389 2.160205 TCTTCGTACCACTGACAGAGG 58.840 52.381 16.51 16.51 31.82 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.