Multiple sequence alignment - TraesCS1D01G041300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G041300 chr1D 100.000 3712 0 0 1 3712 20054109 20050398 0.000000e+00 6855
1 TraesCS1D01G041300 chr1D 84.804 204 25 5 1721 1923 254471890 254472088 2.260000e-47 200
2 TraesCS1D01G041300 chr1B 88.175 1573 85 44 1 1509 33980182 33981717 0.000000e+00 1781
3 TraesCS1D01G041300 chr1B 88.595 491 44 8 2641 3120 33982479 33982968 1.490000e-163 586
4 TraesCS1D01G041300 chr1B 91.282 195 10 4 3221 3412 33983338 33983528 3.680000e-65 259
5 TraesCS1D01G041300 chr1B 77.354 446 66 18 2147 2568 33982033 33982467 8.020000e-57 231
6 TraesCS1D01G041300 chr1A 86.179 1599 124 54 1 1568 22290811 22292343 0.000000e+00 1639
7 TraesCS1D01G041300 chr1A 84.113 1240 121 40 2028 3210 22292680 22293900 0.000000e+00 1129
8 TraesCS1D01G041300 chr1A 88.125 320 33 4 3208 3526 22294184 22294499 3.500000e-100 375
9 TraesCS1D01G041300 chr1A 84.804 204 25 5 1721 1923 554453253 554453055 2.260000e-47 200
10 TraesCS1D01G041300 chr5D 85.009 587 41 31 1085 1643 189929916 189930483 1.510000e-153 553
11 TraesCS1D01G041300 chr3B 85.294 204 24 5 1721 1923 201484932 201485130 4.860000e-49 206
12 TraesCS1D01G041300 chr3B 84.804 204 25 5 1721 1923 201488204 201488402 2.260000e-47 200
13 TraesCS1D01G041300 chrUn 84.804 204 25 5 1721 1923 423004429 423004627 2.260000e-47 200
14 TraesCS1D01G041300 chr7D 84.804 204 25 5 1721 1923 231549710 231549908 2.260000e-47 200
15 TraesCS1D01G041300 chr3D 84.804 204 25 5 1721 1923 24160643 24160841 2.260000e-47 200
16 TraesCS1D01G041300 chr3A 84.804 204 25 5 1721 1923 273160338 273160140 2.260000e-47 200
17 TraesCS1D01G041300 chr3A 84.804 204 25 5 1721 1923 524023666 524023864 2.260000e-47 200
18 TraesCS1D01G041300 chr7A 76.754 228 29 13 1293 1520 580367909 580368112 5.070000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G041300 chr1D 20050398 20054109 3711 True 6855.000000 6855 100.0000 1 3712 1 chr1D.!!$R1 3711
1 TraesCS1D01G041300 chr1B 33980182 33983528 3346 False 714.250000 1781 86.3515 1 3412 4 chr1B.!!$F1 3411
2 TraesCS1D01G041300 chr1A 22290811 22294499 3688 False 1047.666667 1639 86.1390 1 3526 3 chr1A.!!$F1 3525
3 TraesCS1D01G041300 chr5D 189929916 189930483 567 False 553.000000 553 85.0090 1085 1643 1 chr5D.!!$F1 558
4 TraesCS1D01G041300 chr3B 201484932 201488402 3470 False 203.000000 206 85.0490 1721 1923 2 chr3B.!!$F1 202

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.242825 TCGGAGCGTTAACTCACCTG 59.757 55.0 9.85 4.63 38.5 4.00 F
1290 1355 0.108424 CCGAGAAGTGAGAAGCCCTG 60.108 60.0 0.00 0.00 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1580 1681 0.179062 CTACTGGCATCAGCTGGGAC 60.179 60.0 15.13 9.63 44.59 4.46 R
2735 4267 0.459411 GTTTGCCACAACAAACGGCT 60.459 50.0 4.57 0.00 46.95 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.322712 AGGTATTCTAACACAAAAGCACCAAA 59.677 34.615 0.00 0.00 0.00 3.28
51 52 7.713764 ATTCTAACACAAAAGCACCAAATTC 57.286 32.000 0.00 0.00 0.00 2.17
52 53 5.277825 TCTAACACAAAAGCACCAAATTCG 58.722 37.500 0.00 0.00 0.00 3.34
53 54 3.791973 ACACAAAAGCACCAAATTCGA 57.208 38.095 0.00 0.00 0.00 3.71
54 55 3.443976 ACACAAAAGCACCAAATTCGAC 58.556 40.909 0.00 0.00 0.00 4.20
55 56 2.794350 CACAAAAGCACCAAATTCGACC 59.206 45.455 0.00 0.00 0.00 4.79
56 57 2.428890 ACAAAAGCACCAAATTCGACCA 59.571 40.909 0.00 0.00 0.00 4.02
57 58 3.118956 ACAAAAGCACCAAATTCGACCAA 60.119 39.130 0.00 0.00 0.00 3.67
79 80 0.242825 TCGGAGCGTTAACTCACCTG 59.757 55.000 9.85 4.63 38.50 4.00
126 127 1.374758 CCACTTCCACGTCCTGCTC 60.375 63.158 0.00 0.00 0.00 4.26
136 137 4.067512 TCCTGCTCCTCCGCCTCT 62.068 66.667 0.00 0.00 0.00 3.69
178 179 3.474570 GCCTCCGCCTCCATCAGT 61.475 66.667 0.00 0.00 0.00 3.41
289 293 2.039624 TCCAGCTCCTCCAGGTCC 59.960 66.667 0.00 0.00 36.34 4.46
301 305 2.203640 AGGTCCTCAGCACCGTCA 60.204 61.111 0.00 0.00 39.13 4.35
307 311 1.005748 CTCAGCACCGTCAGCTTCA 60.006 57.895 0.00 0.00 41.14 3.02
308 312 0.601046 CTCAGCACCGTCAGCTTCAA 60.601 55.000 0.00 0.00 41.14 2.69
329 333 3.721706 CCTGCTTCCCCGGCTCTT 61.722 66.667 0.00 0.00 0.00 2.85
331 335 3.689002 CTGCTTCCCCGGCTCTTCC 62.689 68.421 0.00 0.00 0.00 3.46
352 356 2.470286 GACTTCTTGTTCGCGGCG 59.530 61.111 17.70 17.70 0.00 6.46
473 477 2.434359 CCTTCGACGCAGGTTCCC 60.434 66.667 5.27 0.00 0.00 3.97
554 576 2.516048 CTTCTCCTCCGGGTCCTCCA 62.516 65.000 0.00 0.00 34.36 3.86
837 868 0.395173 AGAGGAAGAGAGGGCGAGAC 60.395 60.000 0.00 0.00 0.00 3.36
838 869 1.720694 GAGGAAGAGAGGGCGAGACG 61.721 65.000 0.00 0.00 0.00 4.18
839 870 1.749638 GGAAGAGAGGGCGAGACGA 60.750 63.158 0.00 0.00 0.00 4.20
840 871 1.720694 GGAAGAGAGGGCGAGACGAG 61.721 65.000 0.00 0.00 0.00 4.18
841 872 0.745128 GAAGAGAGGGCGAGACGAGA 60.745 60.000 0.00 0.00 0.00 4.04
861 892 3.383825 AGACGAGACGGCAAGGTTTATAT 59.616 43.478 0.00 0.00 37.34 0.86
888 923 0.602905 GGCTGATATGGGCCGTACAC 60.603 60.000 7.83 6.25 38.91 2.90
889 924 0.944311 GCTGATATGGGCCGTACACG 60.944 60.000 7.83 0.26 39.44 4.49
890 925 0.671796 CTGATATGGGCCGTACACGA 59.328 55.000 7.83 0.00 43.02 4.35
894 929 0.607112 TATGGGCCGTACACGAAACA 59.393 50.000 0.00 0.00 43.02 2.83
900 935 1.225637 CGTACACGAAACATGCGGC 60.226 57.895 0.00 0.00 43.02 6.53
946 991 4.067896 AGATCGATCTCTTCTCAGCTCTC 58.932 47.826 22.32 0.00 29.30 3.20
947 992 2.571212 TCGATCTCTTCTCAGCTCTCC 58.429 52.381 0.00 0.00 0.00 3.71
948 993 2.172505 TCGATCTCTTCTCAGCTCTCCT 59.827 50.000 0.00 0.00 0.00 3.69
950 995 3.745480 CGATCTCTTCTCAGCTCTCCTCT 60.745 52.174 0.00 0.00 0.00 3.69
953 998 4.523083 TCTCTTCTCAGCTCTCCTCTTAC 58.477 47.826 0.00 0.00 0.00 2.34
955 1000 2.445682 TCTCAGCTCTCCTCTTACCC 57.554 55.000 0.00 0.00 0.00 3.69
956 1001 1.926665 TCTCAGCTCTCCTCTTACCCT 59.073 52.381 0.00 0.00 0.00 4.34
987 1040 2.813042 GACGTGGAGCAGAGCAGC 60.813 66.667 0.00 0.00 0.00 5.25
988 1041 3.580100 GACGTGGAGCAGAGCAGCA 62.580 63.158 0.00 0.00 36.85 4.41
989 1042 2.814341 CGTGGAGCAGAGCAGCAG 60.814 66.667 0.00 0.00 36.85 4.24
993 1046 2.886604 GAGCAGAGCAGCAGAGCG 60.887 66.667 0.00 0.00 40.15 5.03
994 1047 3.353770 GAGCAGAGCAGCAGAGCGA 62.354 63.158 0.00 0.00 40.15 4.93
996 1049 2.738695 GCAGAGCAGCAGAGCGAAC 61.739 63.158 0.00 0.00 40.15 3.95
997 1050 1.373873 CAGAGCAGCAGAGCGAACA 60.374 57.895 0.00 0.00 40.15 3.18
998 1051 1.373999 AGAGCAGCAGAGCGAACAC 60.374 57.895 0.00 0.00 40.15 3.32
1289 1354 1.893919 GCCGAGAAGTGAGAAGCCCT 61.894 60.000 0.00 0.00 0.00 5.19
1290 1355 0.108424 CCGAGAAGTGAGAAGCCCTG 60.108 60.000 0.00 0.00 0.00 4.45
1309 1374 2.595655 CCCCCATTCCCTCCGTTC 59.404 66.667 0.00 0.00 0.00 3.95
1310 1375 2.595655 CCCCATTCCCTCCGTTCC 59.404 66.667 0.00 0.00 0.00 3.62
1311 1376 2.001269 CCCCATTCCCTCCGTTCCT 61.001 63.158 0.00 0.00 0.00 3.36
1314 1379 1.497161 CCATTCCCTCCGTTCCTACT 58.503 55.000 0.00 0.00 0.00 2.57
1324 1389 1.728672 GTTCCTACTCCTCCTCGCG 59.271 63.158 0.00 0.00 0.00 5.87
1360 1430 1.833630 TCTTCTCGATGCCTGGTTGAT 59.166 47.619 0.00 0.00 0.00 2.57
1372 1442 3.727726 CCTGGTTGATTTGGTTTGGTTC 58.272 45.455 0.00 0.00 0.00 3.62
1469 1549 2.037620 CTCGCCCCTCATCCTTCCTG 62.038 65.000 0.00 0.00 0.00 3.86
1474 1554 1.355720 CCCCTCATCCTTCCTGTTGTT 59.644 52.381 0.00 0.00 0.00 2.83
1475 1555 2.576191 CCCCTCATCCTTCCTGTTGTTA 59.424 50.000 0.00 0.00 0.00 2.41
1531 1624 2.550978 CGTAGCAATCAATCCTCGGTT 58.449 47.619 0.00 0.00 0.00 4.44
1532 1625 2.285220 CGTAGCAATCAATCCTCGGTTG 59.715 50.000 0.00 0.00 0.00 3.77
1533 1626 2.496899 AGCAATCAATCCTCGGTTGT 57.503 45.000 0.00 0.00 0.00 3.32
1534 1627 2.795329 AGCAATCAATCCTCGGTTGTT 58.205 42.857 0.00 0.00 0.00 2.83
1535 1628 2.749621 AGCAATCAATCCTCGGTTGTTC 59.250 45.455 0.00 0.00 0.00 3.18
1568 1661 1.331756 GTGCCGAGCAATCCTTGTATG 59.668 52.381 0.00 0.00 41.47 2.39
1569 1662 0.308993 GCCGAGCAATCCTTGTATGC 59.691 55.000 0.00 0.00 40.34 3.14
1580 1681 2.819019 TCCTTGTATGCAACCATGTGTG 59.181 45.455 0.00 0.00 32.85 3.82
1584 1685 1.472480 GTATGCAACCATGTGTGTCCC 59.528 52.381 0.00 0.00 32.85 4.46
1585 1686 0.178967 ATGCAACCATGTGTGTCCCA 60.179 50.000 0.00 0.00 0.00 4.37
1592 1693 1.092348 CATGTGTGTCCCAGCTGATG 58.908 55.000 17.39 6.04 0.00 3.07
1593 1694 0.679002 ATGTGTGTCCCAGCTGATGC 60.679 55.000 17.39 4.82 40.05 3.91
1611 1712 1.675641 CCAGTAGCTTGGGTGTGCC 60.676 63.158 0.00 0.00 34.46 5.01
1612 1713 2.034879 CAGTAGCTTGGGTGTGCCG 61.035 63.158 0.00 0.00 34.97 5.69
1613 1714 2.032071 GTAGCTTGGGTGTGCCGT 59.968 61.111 0.00 0.00 34.97 5.68
1614 1715 2.031919 TAGCTTGGGTGTGCCGTG 59.968 61.111 0.00 0.00 34.97 4.94
1617 1718 3.663176 CTTGGGTGTGCCGTGCTG 61.663 66.667 0.00 0.00 34.97 4.41
1618 1719 4.497984 TTGGGTGTGCCGTGCTGT 62.498 61.111 0.00 0.00 34.97 4.40
1619 1720 4.497984 TGGGTGTGCCGTGCTGTT 62.498 61.111 0.00 0.00 34.97 3.16
1620 1721 3.964875 GGGTGTGCCGTGCTGTTG 61.965 66.667 0.00 0.00 34.97 3.33
1621 1722 3.209097 GGTGTGCCGTGCTGTTGT 61.209 61.111 0.00 0.00 0.00 3.32
1622 1723 1.890041 GGTGTGCCGTGCTGTTGTA 60.890 57.895 0.00 0.00 0.00 2.41
1623 1724 1.278637 GTGTGCCGTGCTGTTGTAC 59.721 57.895 0.00 0.00 0.00 2.90
1624 1725 1.145156 TGTGCCGTGCTGTTGTACT 59.855 52.632 0.00 0.00 0.00 2.73
1625 1726 0.878523 TGTGCCGTGCTGTTGTACTC 60.879 55.000 0.00 0.00 0.00 2.59
1626 1727 1.663388 TGCCGTGCTGTTGTACTCG 60.663 57.895 0.00 0.00 0.00 4.18
1627 1728 1.663702 GCCGTGCTGTTGTACTCGT 60.664 57.895 0.00 0.00 0.00 4.18
1628 1729 1.615107 GCCGTGCTGTTGTACTCGTC 61.615 60.000 0.00 0.00 0.00 4.20
1629 1730 0.318360 CCGTGCTGTTGTACTCGTCA 60.318 55.000 0.00 0.00 0.00 4.35
1630 1731 1.053048 CGTGCTGTTGTACTCGTCAG 58.947 55.000 0.00 0.00 0.00 3.51
1638 1739 5.164080 GCTGTTGTACTCGTCAGTGTTTATC 60.164 44.000 0.00 0.00 33.62 1.75
1643 1744 2.488545 ACTCGTCAGTGTTTATCGCTCT 59.511 45.455 0.00 0.00 34.33 4.09
1645 1746 1.321743 CGTCAGTGTTTATCGCTCTGC 59.678 52.381 0.00 0.00 34.33 4.26
1646 1747 2.337583 GTCAGTGTTTATCGCTCTGCA 58.662 47.619 0.00 0.00 34.33 4.41
1649 1750 4.566759 GTCAGTGTTTATCGCTCTGCATTA 59.433 41.667 0.00 0.00 34.33 1.90
1650 1751 4.566759 TCAGTGTTTATCGCTCTGCATTAC 59.433 41.667 0.00 0.00 34.33 1.89
1660 1761 4.822350 TCGCTCTGCATTACTCTGTATAGT 59.178 41.667 0.00 0.00 0.00 2.12
1666 1773 8.703604 TCTGCATTACTCTGTATAGTGAAAAC 57.296 34.615 0.00 0.00 0.00 2.43
1667 1774 7.764443 TCTGCATTACTCTGTATAGTGAAAACC 59.236 37.037 0.00 0.00 0.00 3.27
1668 1775 6.821665 TGCATTACTCTGTATAGTGAAAACCC 59.178 38.462 0.00 0.00 0.00 4.11
1669 1776 7.048512 GCATTACTCTGTATAGTGAAAACCCT 58.951 38.462 0.00 0.00 0.00 4.34
1670 1777 7.553044 GCATTACTCTGTATAGTGAAAACCCTT 59.447 37.037 0.00 0.00 0.00 3.95
1671 1778 9.449719 CATTACTCTGTATAGTGAAAACCCTTT 57.550 33.333 0.00 0.00 0.00 3.11
1677 1784 9.802039 TCTGTATAGTGAAAACCCTTTATTTGT 57.198 29.630 0.00 0.00 0.00 2.83
1679 1786 9.802039 TGTATAGTGAAAACCCTTTATTTGTCT 57.198 29.630 0.00 0.00 0.00 3.41
1681 1788 6.405278 AGTGAAAACCCTTTATTTGTCTGG 57.595 37.500 0.00 0.00 0.00 3.86
1682 1789 5.897250 AGTGAAAACCCTTTATTTGTCTGGT 59.103 36.000 0.00 0.00 0.00 4.00
1683 1790 6.382859 AGTGAAAACCCTTTATTTGTCTGGTT 59.617 34.615 0.00 0.00 37.68 3.67
1684 1791 6.478673 GTGAAAACCCTTTATTTGTCTGGTTG 59.521 38.462 0.00 0.00 36.29 3.77
1685 1792 5.545063 AAACCCTTTATTTGTCTGGTTGG 57.455 39.130 0.00 0.00 36.29 3.77
1686 1793 4.463050 ACCCTTTATTTGTCTGGTTGGA 57.537 40.909 0.00 0.00 0.00 3.53
1687 1794 5.010708 ACCCTTTATTTGTCTGGTTGGAT 57.989 39.130 0.00 0.00 0.00 3.41
1688 1795 4.772100 ACCCTTTATTTGTCTGGTTGGATG 59.228 41.667 0.00 0.00 0.00 3.51
1689 1796 5.016173 CCCTTTATTTGTCTGGTTGGATGA 58.984 41.667 0.00 0.00 0.00 2.92
1690 1797 5.126061 CCCTTTATTTGTCTGGTTGGATGAG 59.874 44.000 0.00 0.00 0.00 2.90
1691 1798 5.945784 CCTTTATTTGTCTGGTTGGATGAGA 59.054 40.000 0.00 0.00 0.00 3.27
1692 1799 6.434028 CCTTTATTTGTCTGGTTGGATGAGAA 59.566 38.462 0.00 0.00 0.00 2.87
1693 1800 7.039784 CCTTTATTTGTCTGGTTGGATGAGAAA 60.040 37.037 0.00 0.00 0.00 2.52
1694 1801 7.831691 TTATTTGTCTGGTTGGATGAGAAAA 57.168 32.000 0.00 0.00 0.00 2.29
1695 1802 6.923199 ATTTGTCTGGTTGGATGAGAAAAT 57.077 33.333 0.00 0.00 0.00 1.82
1696 1803 9.527157 TTATTTGTCTGGTTGGATGAGAAAATA 57.473 29.630 0.00 0.00 0.00 1.40
1697 1804 6.817765 TTGTCTGGTTGGATGAGAAAATAC 57.182 37.500 0.00 0.00 0.00 1.89
1698 1805 4.935205 TGTCTGGTTGGATGAGAAAATACG 59.065 41.667 0.00 0.00 0.00 3.06
1699 1806 5.175859 GTCTGGTTGGATGAGAAAATACGA 58.824 41.667 0.00 0.00 0.00 3.43
1700 1807 5.642063 GTCTGGTTGGATGAGAAAATACGAA 59.358 40.000 0.00 0.00 0.00 3.85
1701 1808 6.316390 GTCTGGTTGGATGAGAAAATACGAAT 59.684 38.462 0.00 0.00 0.00 3.34
1702 1809 6.884295 TCTGGTTGGATGAGAAAATACGAATT 59.116 34.615 0.00 0.00 0.00 2.17
1703 1810 8.044309 TCTGGTTGGATGAGAAAATACGAATTA 58.956 33.333 0.00 0.00 0.00 1.40
1704 1811 8.208718 TGGTTGGATGAGAAAATACGAATTAG 57.791 34.615 0.00 0.00 0.00 1.73
1705 1812 7.132863 GGTTGGATGAGAAAATACGAATTAGC 58.867 38.462 0.00 0.00 0.00 3.09
1706 1813 6.525121 TGGATGAGAAAATACGAATTAGCG 57.475 37.500 0.00 0.00 37.29 4.26
1707 1814 5.465390 TGGATGAGAAAATACGAATTAGCGG 59.535 40.000 0.00 0.00 35.12 5.52
1708 1815 5.465724 GGATGAGAAAATACGAATTAGCGGT 59.534 40.000 0.00 0.00 35.12 5.68
1709 1816 6.018180 GGATGAGAAAATACGAATTAGCGGTT 60.018 38.462 0.00 0.00 35.12 4.44
1710 1817 6.730960 TGAGAAAATACGAATTAGCGGTTT 57.269 33.333 0.00 0.00 35.12 3.27
1711 1818 7.136289 TGAGAAAATACGAATTAGCGGTTTT 57.864 32.000 0.00 0.00 36.57 2.43
1712 1819 8.254178 TGAGAAAATACGAATTAGCGGTTTTA 57.746 30.769 0.00 0.00 35.18 1.52
1713 1820 8.385111 TGAGAAAATACGAATTAGCGGTTTTAG 58.615 33.333 0.00 0.00 35.18 1.85
1714 1821 7.691158 AGAAAATACGAATTAGCGGTTTTAGG 58.309 34.615 0.00 0.00 35.18 2.69
1715 1822 6.990341 AAATACGAATTAGCGGTTTTAGGT 57.010 33.333 0.00 0.00 35.12 3.08
1716 1823 6.990341 AATACGAATTAGCGGTTTTAGGTT 57.010 33.333 0.00 0.00 35.12 3.50
1717 1824 6.990341 ATACGAATTAGCGGTTTTAGGTTT 57.010 33.333 0.00 0.00 35.12 3.27
1718 1825 5.038247 ACGAATTAGCGGTTTTAGGTTTG 57.962 39.130 0.00 0.00 35.12 2.93
1719 1826 4.516321 ACGAATTAGCGGTTTTAGGTTTGT 59.484 37.500 0.00 0.00 35.12 2.83
1720 1827 4.849383 CGAATTAGCGGTTTTAGGTTTGTG 59.151 41.667 0.00 0.00 0.00 3.33
1721 1828 4.776795 ATTAGCGGTTTTAGGTTTGTGG 57.223 40.909 0.00 0.00 0.00 4.17
1722 1829 1.324383 AGCGGTTTTAGGTTTGTGGG 58.676 50.000 0.00 0.00 0.00 4.61
1723 1830 0.315886 GCGGTTTTAGGTTTGTGGGG 59.684 55.000 0.00 0.00 0.00 4.96
1724 1831 1.984066 CGGTTTTAGGTTTGTGGGGA 58.016 50.000 0.00 0.00 0.00 4.81
1725 1832 2.308690 CGGTTTTAGGTTTGTGGGGAA 58.691 47.619 0.00 0.00 0.00 3.97
1731 1838 5.799827 TTTAGGTTTGTGGGGAAAGAATG 57.200 39.130 0.00 0.00 0.00 2.67
1734 1841 4.810345 AGGTTTGTGGGGAAAGAATGTTA 58.190 39.130 0.00 0.00 0.00 2.41
1739 1846 7.264947 GTTTGTGGGGAAAGAATGTTATATGG 58.735 38.462 0.00 0.00 0.00 2.74
1741 1848 6.921412 TGTGGGGAAAGAATGTTATATGGAT 58.079 36.000 0.00 0.00 0.00 3.41
1778 1885 0.319900 TGAGTTCAAGCCTGACGAGC 60.320 55.000 0.00 0.00 0.00 5.03
1797 1904 8.347771 TGACGAGCGTAATATTCTACAACTAAT 58.652 33.333 0.00 0.00 0.00 1.73
1818 1925 9.255029 ACTAATAAGCCATTTATTTTGTGACCT 57.745 29.630 0.00 0.00 41.20 3.85
1819 1926 9.520204 CTAATAAGCCATTTATTTTGTGACCTG 57.480 33.333 0.00 0.00 41.20 4.00
1827 1934 1.859302 TTTTGTGACCTGCCCACTTT 58.141 45.000 0.00 0.00 35.66 2.66
1830 1937 0.179020 TGTGACCTGCCCACTTTCTG 60.179 55.000 0.00 0.00 35.66 3.02
1831 1938 1.228245 TGACCTGCCCACTTTCTGC 60.228 57.895 0.00 0.00 0.00 4.26
1878 1985 9.927668 CCTTTATATTTCAAAGGTGTTGAATGT 57.072 29.630 7.17 0.00 44.69 2.71
1880 1987 9.619316 TTTATATTTCAAAGGTGTTGAATGTCG 57.381 29.630 2.58 0.00 38.12 4.35
1914 2021 1.488705 TTGCCCGGGTCAGATGAAGT 61.489 55.000 24.63 0.00 0.00 3.01
1922 3040 6.576442 GCCCGGGTCAGATGAAGTAATATAAT 60.576 42.308 24.63 0.00 0.00 1.28
1952 3070 6.808008 ATTGACCAACTTATCAGTGTCTTG 57.192 37.500 0.00 0.00 31.60 3.02
1954 3072 4.346709 TGACCAACTTATCAGTGTCTTGGA 59.653 41.667 3.08 0.00 32.69 3.53
1957 3075 7.016153 ACCAACTTATCAGTGTCTTGGATAA 57.984 36.000 3.08 0.00 32.69 1.75
1958 3076 7.633789 ACCAACTTATCAGTGTCTTGGATAAT 58.366 34.615 3.08 0.00 32.69 1.28
1959 3077 7.770897 ACCAACTTATCAGTGTCTTGGATAATC 59.229 37.037 3.08 0.00 32.69 1.75
1960 3078 7.042456 CCAACTTATCAGTGTCTTGGATAATCG 60.042 40.741 0.00 0.00 34.17 3.34
1961 3079 6.516718 ACTTATCAGTGTCTTGGATAATCGG 58.483 40.000 0.00 0.00 34.17 4.18
1962 3080 3.179443 TCAGTGTCTTGGATAATCGGC 57.821 47.619 0.00 0.00 0.00 5.54
2037 3412 7.907214 AGATAAGCCACAACAAGTTAAGTAG 57.093 36.000 0.00 0.00 0.00 2.57
2040 3415 8.863872 ATAAGCCACAACAAGTTAAGTAGAAT 57.136 30.769 0.00 0.00 0.00 2.40
2062 3437 5.766150 TGGATTTCAAACCAACTAGTGTG 57.234 39.130 0.00 0.00 32.93 3.82
2078 3456 1.590238 GTGTGATGATCTTTCTCGGCG 59.410 52.381 0.00 0.00 0.00 6.46
2105 3483 6.487689 ACTCGTGGATCTTCTTTGAAAATC 57.512 37.500 0.00 0.00 0.00 2.17
2110 3488 7.040478 TCGTGGATCTTCTTTGAAAATCAACAT 60.040 33.333 0.00 0.00 35.89 2.71
2147 3545 1.451028 CTTAGGCTGCAGCTGGACC 60.451 63.158 35.82 20.17 41.70 4.46
2207 3622 5.056480 CAGCATTCGGGACATATCTAAACA 58.944 41.667 0.00 0.00 0.00 2.83
2209 3624 5.057149 GCATTCGGGACATATCTAAACACT 58.943 41.667 0.00 0.00 0.00 3.55
2259 3674 5.551233 AGTTCACAAGAGCTTGCACTATAA 58.449 37.500 9.99 0.00 44.03 0.98
2310 3727 7.148188 CCAATAAGCTTGCTTGTAAGATGAGAA 60.148 37.037 17.04 0.00 0.00 2.87
2315 3732 5.277974 GCTTGCTTGTAAGATGAGAACAACA 60.278 40.000 2.74 0.00 0.00 3.33
2340 3757 2.042464 CTGGTTAGGCTGCTAGGATGA 58.958 52.381 0.00 0.00 0.00 2.92
2361 3779 7.227512 GGATGACTATGGACACTGGAAATAAAG 59.772 40.741 0.00 0.00 0.00 1.85
2365 3783 8.095452 ACTATGGACACTGGAAATAAAGATCT 57.905 34.615 0.00 0.00 0.00 2.75
2366 3784 7.989741 ACTATGGACACTGGAAATAAAGATCTG 59.010 37.037 0.00 0.00 0.00 2.90
2367 3785 6.126863 TGGACACTGGAAATAAAGATCTGT 57.873 37.500 0.00 0.00 0.00 3.41
2368 3786 7.252612 TGGACACTGGAAATAAAGATCTGTA 57.747 36.000 0.00 0.00 0.00 2.74
2392 3810 6.713762 TGTGCTGATAATTAAATTCCTGGG 57.286 37.500 0.00 0.00 0.00 4.45
2393 3811 5.068987 TGTGCTGATAATTAAATTCCTGGGC 59.931 40.000 0.00 0.00 0.00 5.36
2396 3814 5.985530 GCTGATAATTAAATTCCTGGGCAAC 59.014 40.000 0.00 0.00 0.00 4.17
2441 3870 4.278170 TCATCGAACATGGATAAAATGGCC 59.722 41.667 0.00 0.00 0.00 5.36
2442 3871 3.897239 TCGAACATGGATAAAATGGCCT 58.103 40.909 3.32 0.00 0.00 5.19
2449 3878 5.662208 ACATGGATAAAATGGCCTGATTTGA 59.338 36.000 3.32 0.00 0.00 2.69
2454 3883 1.755179 AATGGCCTGATTTGAGACCG 58.245 50.000 3.32 0.00 0.00 4.79
2462 3898 4.156008 GCCTGATTTGAGACCGTATGTTTT 59.844 41.667 0.00 0.00 0.00 2.43
2487 3923 5.109903 CGAAAGGTATGCTGCTAGTTTAGT 58.890 41.667 0.00 0.00 0.00 2.24
2501 3937 9.262358 CTGCTAGTTTAGTTTGAGTTCTTACTT 57.738 33.333 0.00 0.00 33.84 2.24
2540 4067 7.702348 CCTTGTATGCTTTAAGGCTAAATGTTC 59.298 37.037 11.19 0.00 35.06 3.18
2551 4078 9.547753 TTAAGGCTAAATGTTCTGATCACTATC 57.452 33.333 0.00 0.00 0.00 2.08
2571 4098 7.328005 CACTATCGTGATGATTAATCTGACTGG 59.672 40.741 16.24 2.60 43.97 4.00
2572 4099 5.852282 TCGTGATGATTAATCTGACTGGA 57.148 39.130 16.24 4.71 36.15 3.86
2575 4102 7.597386 TCGTGATGATTAATCTGACTGGATAG 58.403 38.462 16.24 0.00 36.15 2.08
2582 4109 9.605275 TGATTAATCTGACTGGATAGAACTTTG 57.395 33.333 16.24 0.00 0.00 2.77
2584 4111 4.890158 TCTGACTGGATAGAACTTTGCA 57.110 40.909 0.00 0.00 0.00 4.08
2596 4124 2.159327 ACTTTGCATGCCTTGAAAGC 57.841 45.000 21.69 0.00 31.31 3.51
2599 4127 2.616634 TTGCATGCCTTGAAAGCAAA 57.383 40.000 16.68 0.00 44.83 3.68
2605 4133 3.374220 TGCCTTGAAAGCAAACATCTG 57.626 42.857 0.00 0.00 37.28 2.90
2610 4138 4.276678 CCTTGAAAGCAAACATCTGACTGA 59.723 41.667 0.00 0.00 32.73 3.41
2615 4143 5.876612 AAGCAAACATCTGACTGATTCTC 57.123 39.130 0.00 0.00 32.05 2.87
2619 4147 5.163774 GCAAACATCTGACTGATTCTCCTTC 60.164 44.000 0.00 0.00 32.05 3.46
2621 4149 5.596836 ACATCTGACTGATTCTCCTTCTC 57.403 43.478 0.00 0.00 32.05 2.87
2632 4161 2.050144 TCTCCTTCTCCTGTGTTTGCT 58.950 47.619 0.00 0.00 0.00 3.91
2634 4163 1.151668 CCTTCTCCTGTGTTTGCTCG 58.848 55.000 0.00 0.00 0.00 5.03
2637 4166 1.865865 TCTCCTGTGTTTGCTCGAAC 58.134 50.000 0.00 0.00 0.00 3.95
2642 4171 2.539547 CCTGTGTTTGCTCGAACTGTTG 60.540 50.000 0.00 0.00 0.00 3.33
2681 4210 7.201617 CGTAGGTGGGATAAAAAGATGAAAGAC 60.202 40.741 0.00 0.00 0.00 3.01
2735 4267 2.848679 TGGCCTGCTGGTGACTCA 60.849 61.111 11.69 0.39 35.27 3.41
2769 4301 1.200020 GCAAACGGGAAGGAACTCATG 59.800 52.381 0.00 0.00 38.49 3.07
2777 4309 6.525629 ACGGGAAGGAACTCATGATATAAAG 58.474 40.000 0.00 0.00 38.49 1.85
2806 4340 7.113658 TCTCCATACAATGAAACTAGTCTCC 57.886 40.000 0.00 0.00 0.00 3.71
2807 4341 6.098409 TCTCCATACAATGAAACTAGTCTCCC 59.902 42.308 0.00 0.00 0.00 4.30
2808 4342 5.050490 CCATACAATGAAACTAGTCTCCCG 58.950 45.833 0.00 0.00 0.00 5.14
2819 4353 4.124970 ACTAGTCTCCCGTTTTGTTTGAC 58.875 43.478 0.00 0.00 0.00 3.18
2820 4354 2.993937 AGTCTCCCGTTTTGTTTGACA 58.006 42.857 0.00 0.00 0.00 3.58
2841 4375 1.821136 AGGCCAAGCTGTTGATTAAGC 59.179 47.619 5.01 0.00 39.82 3.09
2904 4440 4.464947 AGGAAGTTCATAGGCTTATTGGC 58.535 43.478 5.01 0.00 42.15 4.52
3068 4609 8.849168 TGAAACAGATCAAAATTATGAGTGTGT 58.151 29.630 0.00 0.00 33.21 3.72
3069 4610 9.683069 GAAACAGATCAAAATTATGAGTGTGTT 57.317 29.630 0.00 0.00 33.21 3.32
3114 4662 0.040067 GCACTGCAGGGTTTCTTTCG 60.040 55.000 19.18 0.00 0.00 3.46
3130 4678 1.305201 TTCGGTGTGACAGAAAAGGC 58.695 50.000 0.00 0.00 29.69 4.35
3147 4695 9.956720 CAGAAAAGGCCATTCAAGTAAATATAG 57.043 33.333 19.76 0.00 0.00 1.31
3148 4696 9.920946 AGAAAAGGCCATTCAAGTAAATATAGA 57.079 29.630 19.76 0.00 0.00 1.98
3261 5678 2.663808 CATCTAGTGCTCGAGATGCTG 58.336 52.381 20.83 2.66 43.09 4.41
3353 5772 6.127591 ACCAACAAATAACAGCACAACACTAA 60.128 34.615 0.00 0.00 0.00 2.24
3354 5774 6.922957 CCAACAAATAACAGCACAACACTAAT 59.077 34.615 0.00 0.00 0.00 1.73
3365 5785 7.336679 ACAGCACAACACTAATATCAAATAGCA 59.663 33.333 0.00 0.00 0.00 3.49
3470 5890 1.562008 TCTGTTGGGGACACTGTGAAA 59.438 47.619 15.86 0.00 42.67 2.69
3471 5891 1.949525 CTGTTGGGGACACTGTGAAAG 59.050 52.381 15.86 0.00 42.67 2.62
3472 5892 1.283613 TGTTGGGGACACTGTGAAAGT 59.716 47.619 15.86 0.00 42.67 2.66
3510 5930 5.385198 AGAGGAAGGAACATTGCAAACTTA 58.615 37.500 1.71 0.00 0.00 2.24
3511 5931 6.012745 AGAGGAAGGAACATTGCAAACTTAT 58.987 36.000 1.71 0.00 0.00 1.73
3513 5933 7.015584 AGAGGAAGGAACATTGCAAACTTATTT 59.984 33.333 1.71 0.00 0.00 1.40
3517 5937 9.255304 GAAGGAACATTGCAAACTTATTTTACA 57.745 29.630 1.71 0.00 0.00 2.41
3518 5938 8.587952 AGGAACATTGCAAACTTATTTTACAC 57.412 30.769 1.71 0.00 0.00 2.90
3520 5940 8.987890 GGAACATTGCAAACTTATTTTACACAT 58.012 29.630 1.71 0.00 0.00 3.21
3537 5957 3.519579 CACATTTGTGTGTCAGGCAAAA 58.480 40.909 2.48 0.00 40.96 2.44
3538 5958 3.306703 CACATTTGTGTGTCAGGCAAAAC 59.693 43.478 2.48 0.00 40.96 2.43
3539 5959 2.663826 TTTGTGTGTCAGGCAAAACC 57.336 45.000 0.00 0.00 39.61 3.27
3540 5960 0.820871 TTGTGTGTCAGGCAAAACCC 59.179 50.000 0.00 0.00 40.58 4.11
3541 5961 0.033601 TGTGTGTCAGGCAAAACCCT 60.034 50.000 0.00 0.00 40.58 4.34
3543 5963 1.607148 GTGTGTCAGGCAAAACCCTAC 59.393 52.381 0.00 0.00 40.58 3.18
3546 5966 2.293399 GTGTCAGGCAAAACCCTACAAG 59.707 50.000 0.00 0.00 40.58 3.16
3547 5967 1.886542 GTCAGGCAAAACCCTACAAGG 59.113 52.381 0.00 0.00 40.58 3.61
3548 5968 0.603065 CAGGCAAAACCCTACAAGGC 59.397 55.000 0.00 0.00 40.58 4.35
3549 5969 0.187361 AGGCAAAACCCTACAAGGCA 59.813 50.000 0.00 0.00 40.58 4.75
3550 5970 0.603065 GGCAAAACCCTACAAGGCAG 59.397 55.000 0.00 0.00 32.73 4.85
3551 5971 0.603065 GCAAAACCCTACAAGGCAGG 59.397 55.000 0.00 0.00 32.73 4.85
3558 5978 1.767759 CCTACAAGGCAGGGGAAATG 58.232 55.000 0.00 0.00 0.00 2.32
3560 5980 2.094675 CTACAAGGCAGGGGAAATGTG 58.905 52.381 0.00 0.00 0.00 3.21
3561 5981 0.542702 ACAAGGCAGGGGAAATGTGG 60.543 55.000 0.00 0.00 0.00 4.17
3563 5983 2.037847 GGCAGGGGAAATGTGGCT 59.962 61.111 0.00 0.00 34.08 4.75
3564 5984 2.054453 GGCAGGGGAAATGTGGCTC 61.054 63.158 0.00 0.00 34.08 4.70
3565 5985 2.054453 GCAGGGGAAATGTGGCTCC 61.054 63.158 0.00 0.00 0.00 4.70
3567 5987 0.394899 CAGGGGAAATGTGGCTCCTC 60.395 60.000 0.00 0.00 31.68 3.71
3569 5989 0.106967 GGGGAAATGTGGCTCCTCTC 60.107 60.000 0.00 0.00 31.88 3.20
3570 5990 0.620556 GGGAAATGTGGCTCCTCTCA 59.379 55.000 0.00 0.00 31.88 3.27
3571 5991 1.680249 GGGAAATGTGGCTCCTCTCAC 60.680 57.143 0.00 0.00 31.88 3.51
3572 5992 1.680249 GGAAATGTGGCTCCTCTCACC 60.680 57.143 0.00 0.00 33.29 4.02
3573 5993 0.329596 AAATGTGGCTCCTCTCACCC 59.670 55.000 0.00 0.00 33.29 4.61
3576 5996 1.059584 TGTGGCTCCTCTCACCCAAA 61.060 55.000 0.00 0.00 33.29 3.28
3577 5997 0.322008 GTGGCTCCTCTCACCCAAAG 60.322 60.000 0.00 0.00 0.00 2.77
3578 5998 1.377856 GGCTCCTCTCACCCAAAGC 60.378 63.158 0.00 0.00 0.00 3.51
3579 5999 1.376466 GCTCCTCTCACCCAAAGCA 59.624 57.895 0.00 0.00 0.00 3.91
3580 6000 0.034670 GCTCCTCTCACCCAAAGCAT 60.035 55.000 0.00 0.00 0.00 3.79
3581 6001 1.747709 CTCCTCTCACCCAAAGCATG 58.252 55.000 0.00 0.00 0.00 4.06
3582 6002 0.322816 TCCTCTCACCCAAAGCATGC 60.323 55.000 10.51 10.51 0.00 4.06
3584 6004 1.065199 CCTCTCACCCAAAGCATGCTA 60.065 52.381 23.00 1.67 0.00 3.49
3585 6005 2.618816 CCTCTCACCCAAAGCATGCTAA 60.619 50.000 23.00 0.00 0.00 3.09
3586 6006 3.084039 CTCTCACCCAAAGCATGCTAAA 58.916 45.455 23.00 0.68 0.00 1.85
3587 6007 2.819608 TCTCACCCAAAGCATGCTAAAC 59.180 45.455 23.00 0.00 0.00 2.01
3588 6008 2.557924 CTCACCCAAAGCATGCTAAACA 59.442 45.455 23.00 0.52 0.00 2.83
3590 6010 1.273327 ACCCAAAGCATGCTAAACAGC 59.727 47.619 23.00 0.00 0.00 4.40
3591 6011 1.404583 CCCAAAGCATGCTAAACAGCC 60.405 52.381 23.00 0.00 0.00 4.85
3592 6012 1.547372 CCAAAGCATGCTAAACAGCCT 59.453 47.619 23.00 0.00 0.00 4.58
3593 6013 2.416431 CCAAAGCATGCTAAACAGCCTC 60.416 50.000 23.00 0.00 0.00 4.70
3594 6014 2.205022 AAGCATGCTAAACAGCCTCA 57.795 45.000 23.00 0.00 0.00 3.86
3596 6016 1.815003 AGCATGCTAAACAGCCTCAAC 59.185 47.619 21.21 0.00 0.00 3.18
3597 6017 1.541147 GCATGCTAAACAGCCTCAACA 59.459 47.619 11.37 0.00 0.00 3.33
3598 6018 2.165030 GCATGCTAAACAGCCTCAACAT 59.835 45.455 11.37 0.00 0.00 2.71
3599 6019 3.733077 GCATGCTAAACAGCCTCAACATC 60.733 47.826 11.37 0.00 0.00 3.06
3600 6020 3.138884 TGCTAAACAGCCTCAACATCA 57.861 42.857 0.00 0.00 0.00 3.07
3601 6021 3.689347 TGCTAAACAGCCTCAACATCAT 58.311 40.909 0.00 0.00 0.00 2.45
3602 6022 3.691118 TGCTAAACAGCCTCAACATCATC 59.309 43.478 0.00 0.00 0.00 2.92
3604 6024 4.337555 GCTAAACAGCCTCAACATCATCAT 59.662 41.667 0.00 0.00 0.00 2.45
3606 6026 6.293298 GCTAAACAGCCTCAACATCATCATAG 60.293 42.308 0.00 0.00 0.00 2.23
3609 6029 3.498777 CAGCCTCAACATCATCATAGCTG 59.501 47.826 0.00 0.00 39.21 4.24
3610 6030 3.136077 AGCCTCAACATCATCATAGCTGT 59.864 43.478 0.00 0.00 0.00 4.40
3611 6031 4.346127 AGCCTCAACATCATCATAGCTGTA 59.654 41.667 0.00 0.00 0.00 2.74
3612 6032 4.689812 GCCTCAACATCATCATAGCTGTAG 59.310 45.833 0.00 0.00 0.00 2.74
3615 6035 6.462067 CCTCAACATCATCATAGCTGTAGACA 60.462 42.308 0.00 0.00 0.00 3.41
3616 6036 7.059202 TCAACATCATCATAGCTGTAGACAT 57.941 36.000 0.00 0.00 0.00 3.06
3617 6037 7.503549 TCAACATCATCATAGCTGTAGACATT 58.496 34.615 0.00 0.00 0.00 2.71
3618 6038 7.440255 TCAACATCATCATAGCTGTAGACATTG 59.560 37.037 0.00 0.00 0.00 2.82
3619 6039 5.699915 ACATCATCATAGCTGTAGACATTGC 59.300 40.000 0.00 0.00 0.00 3.56
3621 6041 5.536260 TCATCATAGCTGTAGACATTGCTC 58.464 41.667 0.00 0.00 37.02 4.26
3622 6042 5.069516 TCATCATAGCTGTAGACATTGCTCA 59.930 40.000 0.00 0.00 37.02 4.26
3623 6043 4.941657 TCATAGCTGTAGACATTGCTCAG 58.058 43.478 0.00 0.00 37.02 3.35
3624 6044 2.687700 AGCTGTAGACATTGCTCAGG 57.312 50.000 0.00 0.00 0.00 3.86
3626 6046 2.304180 AGCTGTAGACATTGCTCAGGTT 59.696 45.455 0.00 0.00 33.99 3.50
3627 6047 2.417933 GCTGTAGACATTGCTCAGGTTG 59.582 50.000 0.00 0.00 0.00 3.77
3628 6048 3.866066 GCTGTAGACATTGCTCAGGTTGA 60.866 47.826 0.00 0.00 0.00 3.18
3629 6049 3.664107 TGTAGACATTGCTCAGGTTGAC 58.336 45.455 0.00 0.00 0.00 3.18
3630 6050 1.800805 AGACATTGCTCAGGTTGACG 58.199 50.000 0.00 0.00 0.00 4.35
3631 6051 1.070758 AGACATTGCTCAGGTTGACGT 59.929 47.619 0.00 0.00 0.00 4.34
3632 6052 2.299013 AGACATTGCTCAGGTTGACGTA 59.701 45.455 0.00 0.00 0.00 3.57
3633 6053 2.412089 GACATTGCTCAGGTTGACGTAC 59.588 50.000 0.00 0.00 0.00 3.67
3635 6055 0.319211 TTGCTCAGGTTGACGTACCG 60.319 55.000 1.86 0.00 43.21 4.02
3636 6056 1.174078 TGCTCAGGTTGACGTACCGA 61.174 55.000 1.86 2.69 43.21 4.69
3639 6059 0.314935 TCAGGTTGACGTACCGAACC 59.685 55.000 1.86 6.09 43.21 3.62
3642 6062 0.730494 GGTTGACGTACCGAACCTCG 60.730 60.000 9.79 0.00 36.89 4.63
3662 6082 0.744414 GCACCTCGCCAAATAGAGCA 60.744 55.000 0.00 0.00 33.39 4.26
3664 6084 2.083774 CACCTCGCCAAATAGAGCAAA 58.916 47.619 0.00 0.00 33.39 3.68
3665 6085 2.487762 CACCTCGCCAAATAGAGCAAAA 59.512 45.455 0.00 0.00 33.39 2.44
3668 6088 2.487762 CTCGCCAAATAGAGCAAAACCA 59.512 45.455 0.00 0.00 0.00 3.67
3669 6089 2.227865 TCGCCAAATAGAGCAAAACCAC 59.772 45.455 0.00 0.00 0.00 4.16
3670 6090 2.030363 CGCCAAATAGAGCAAAACCACA 60.030 45.455 0.00 0.00 0.00 4.17
3671 6091 3.317150 GCCAAATAGAGCAAAACCACAC 58.683 45.455 0.00 0.00 0.00 3.82
3672 6092 3.243704 GCCAAATAGAGCAAAACCACACA 60.244 43.478 0.00 0.00 0.00 3.72
3673 6093 4.561326 GCCAAATAGAGCAAAACCACACAT 60.561 41.667 0.00 0.00 0.00 3.21
3674 6094 5.163513 CCAAATAGAGCAAAACCACACATC 58.836 41.667 0.00 0.00 0.00 3.06
3675 6095 5.278907 CCAAATAGAGCAAAACCACACATCA 60.279 40.000 0.00 0.00 0.00 3.07
3676 6096 6.215121 CAAATAGAGCAAAACCACACATCAA 58.785 36.000 0.00 0.00 0.00 2.57
3677 6097 3.996150 AGAGCAAAACCACACATCAAG 57.004 42.857 0.00 0.00 0.00 3.02
3678 6098 3.290710 AGAGCAAAACCACACATCAAGT 58.709 40.909 0.00 0.00 0.00 3.16
3679 6099 3.701040 AGAGCAAAACCACACATCAAGTT 59.299 39.130 0.00 0.00 0.00 2.66
3680 6100 3.784338 AGCAAAACCACACATCAAGTTG 58.216 40.909 0.00 0.00 0.00 3.16
3681 6101 3.195396 AGCAAAACCACACATCAAGTTGT 59.805 39.130 2.11 0.00 0.00 3.32
3682 6102 4.400884 AGCAAAACCACACATCAAGTTGTA 59.599 37.500 2.11 0.00 0.00 2.41
3685 6105 5.499139 AAACCACACATCAAGTTGTAGTG 57.501 39.130 20.85 20.85 36.34 2.74
3686 6106 3.476552 ACCACACATCAAGTTGTAGTGG 58.523 45.455 23.84 23.84 44.90 4.00
3687 6107 2.813754 CCACACATCAAGTTGTAGTGGG 59.186 50.000 23.95 21.65 40.82 4.61
3689 6109 3.250762 CACACATCAAGTTGTAGTGGGTG 59.749 47.826 23.95 21.49 37.79 4.61
3690 6110 3.118038 ACACATCAAGTTGTAGTGGGTGT 60.118 43.478 23.95 16.79 34.65 4.16
3695 6115 2.616842 CAAGTTGTAGTGGGTGTCCAAC 59.383 50.000 0.00 0.00 46.04 3.77
3707 6127 3.077359 GGTGTCCAACCTCTGATTCAAG 58.923 50.000 0.00 0.00 46.55 3.02
3709 6129 3.748568 GTGTCCAACCTCTGATTCAAGTC 59.251 47.826 0.00 0.00 0.00 3.01
3710 6130 3.390967 TGTCCAACCTCTGATTCAAGTCA 59.609 43.478 0.00 0.00 0.00 3.41
3711 6131 3.999663 GTCCAACCTCTGATTCAAGTCAG 59.000 47.826 0.00 0.00 45.51 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.006832 CGCTCCGAATTTGGTCGAAT 58.993 50.000 18.13 0.00 43.86 3.34
51 52 1.352114 TAACGCTCCGAATTTGGTCG 58.648 50.000 20.06 20.06 40.77 4.79
52 53 2.740447 AGTTAACGCTCCGAATTTGGTC 59.260 45.455 11.68 4.44 0.00 4.02
53 54 2.740447 GAGTTAACGCTCCGAATTTGGT 59.260 45.455 11.68 0.00 0.00 3.67
54 55 2.739913 TGAGTTAACGCTCCGAATTTGG 59.260 45.455 10.78 5.22 34.74 3.28
55 56 3.424433 GGTGAGTTAACGCTCCGAATTTG 60.424 47.826 13.51 0.00 34.74 2.32
56 57 2.740447 GGTGAGTTAACGCTCCGAATTT 59.260 45.455 13.51 0.00 34.74 1.82
57 58 2.028385 AGGTGAGTTAACGCTCCGAATT 60.028 45.455 20.15 4.87 35.06 2.17
126 127 0.103937 GTCTGATGAAGAGGCGGAGG 59.896 60.000 0.00 0.00 34.84 4.30
136 137 3.067106 GGCGAACAAGAAGTCTGATGAA 58.933 45.455 0.00 0.00 0.00 2.57
178 179 1.286553 GAGAAGAGGAGGGTCAGGAGA 59.713 57.143 0.00 0.00 0.00 3.71
272 273 2.039624 GGACCTGGAGGAGCTGGA 59.960 66.667 0.00 0.00 38.94 3.86
289 293 0.601046 TTGAAGCTGACGGTGCTGAG 60.601 55.000 0.00 0.00 41.03 3.35
301 305 1.303970 GAAGCAGGGCCTTGAAGCT 60.304 57.895 20.85 6.83 37.08 3.74
329 333 0.038526 GCGAACAAGAAGTCCGAGGA 60.039 55.000 0.00 0.00 0.00 3.71
331 335 1.344942 CCGCGAACAAGAAGTCCGAG 61.345 60.000 8.23 0.00 0.00 4.63
577 599 1.139947 GAAGGCGTCTCCGGAGAAG 59.860 63.158 34.71 34.71 39.48 2.85
788 810 6.437477 ACTCTTTCTTTCTCAACCAAAAACCT 59.563 34.615 0.00 0.00 0.00 3.50
789 811 6.531594 CACTCTTTCTTTCTCAACCAAAAACC 59.468 38.462 0.00 0.00 0.00 3.27
791 813 6.350949 CCCACTCTTTCTTTCTCAACCAAAAA 60.351 38.462 0.00 0.00 0.00 1.94
792 814 5.127031 CCCACTCTTTCTTTCTCAACCAAAA 59.873 40.000 0.00 0.00 0.00 2.44
793 815 4.644685 CCCACTCTTTCTTTCTCAACCAAA 59.355 41.667 0.00 0.00 0.00 3.28
795 817 3.435026 CCCCACTCTTTCTTTCTCAACCA 60.435 47.826 0.00 0.00 0.00 3.67
837 868 2.202492 CCTTGCCGTCTCGTCTCG 60.202 66.667 0.00 0.00 0.00 4.04
838 869 0.319641 AAACCTTGCCGTCTCGTCTC 60.320 55.000 0.00 0.00 0.00 3.36
839 870 0.963962 TAAACCTTGCCGTCTCGTCT 59.036 50.000 0.00 0.00 0.00 4.18
840 871 2.005971 ATAAACCTTGCCGTCTCGTC 57.994 50.000 0.00 0.00 0.00 4.20
841 872 3.814005 ATATAAACCTTGCCGTCTCGT 57.186 42.857 0.00 0.00 0.00 4.18
861 892 2.515398 CATATCAGCCCGGCCCAA 59.485 61.111 5.55 0.00 0.00 4.12
883 914 0.094730 GAGCCGCATGTTTCGTGTAC 59.905 55.000 0.00 0.00 0.00 2.90
888 923 4.520846 GCCGAGCCGCATGTTTCG 62.521 66.667 0.00 0.00 0.00 3.46
889 924 4.179579 GGCCGAGCCGCATGTTTC 62.180 66.667 0.00 0.00 39.62 2.78
940 985 1.133294 GGCTAGGGTAAGAGGAGAGCT 60.133 57.143 0.00 0.00 0.00 4.09
941 986 1.334160 GGCTAGGGTAAGAGGAGAGC 58.666 60.000 0.00 0.00 0.00 4.09
946 991 2.857744 CGGCGGCTAGGGTAAGAGG 61.858 68.421 7.61 0.00 0.00 3.69
947 992 2.728817 CGGCGGCTAGGGTAAGAG 59.271 66.667 7.61 0.00 0.00 2.85
948 993 3.534056 GCGGCGGCTAGGGTAAGA 61.534 66.667 9.78 0.00 35.83 2.10
987 1040 1.406219 CCGTCATCGTGTTCGCTCTG 61.406 60.000 0.00 0.00 36.96 3.35
988 1041 1.154016 CCGTCATCGTGTTCGCTCT 60.154 57.895 0.00 0.00 36.96 4.09
989 1042 2.158959 CCCGTCATCGTGTTCGCTC 61.159 63.158 0.00 0.00 36.96 5.03
1296 1361 1.413077 GGAGTAGGAACGGAGGGAATG 59.587 57.143 0.00 0.00 0.00 2.67
1297 1362 1.291335 AGGAGTAGGAACGGAGGGAAT 59.709 52.381 0.00 0.00 0.00 3.01
1306 1371 0.747283 TCGCGAGGAGGAGTAGGAAC 60.747 60.000 3.71 0.00 0.00 3.62
1307 1372 0.183014 ATCGCGAGGAGGAGTAGGAA 59.817 55.000 16.66 0.00 0.00 3.36
1308 1373 0.250381 GATCGCGAGGAGGAGTAGGA 60.250 60.000 16.66 0.00 0.00 2.94
1309 1374 0.250553 AGATCGCGAGGAGGAGTAGG 60.251 60.000 16.66 0.00 0.00 3.18
1310 1375 0.871722 CAGATCGCGAGGAGGAGTAG 59.128 60.000 16.66 0.00 0.00 2.57
1311 1376 1.167155 GCAGATCGCGAGGAGGAGTA 61.167 60.000 16.66 0.00 0.00 2.59
1324 1389 1.663135 GAAGAGAAACGGCAGCAGATC 59.337 52.381 0.00 0.00 0.00 2.75
1335 1405 2.275318 CCAGGCATCGAGAAGAGAAAC 58.725 52.381 0.00 0.00 0.00 2.78
1360 1430 2.231478 TGCAGAAACGAACCAAACCAAA 59.769 40.909 0.00 0.00 0.00 3.28
1372 1442 4.389576 GGCACGCCTGCAGAAACG 62.390 66.667 17.39 17.91 46.28 3.60
1458 1538 5.715439 ATGGATAACAACAGGAAGGATGA 57.285 39.130 0.00 0.00 0.00 2.92
1469 1549 4.160252 ACTGGATGGCAAATGGATAACAAC 59.840 41.667 0.00 0.00 0.00 3.32
1474 1554 2.309613 GCACTGGATGGCAAATGGATA 58.690 47.619 0.00 0.00 0.00 2.59
1475 1555 1.117150 GCACTGGATGGCAAATGGAT 58.883 50.000 0.00 0.00 0.00 3.41
1511 1604 2.225068 ACCGAGGATTGATTGCTACG 57.775 50.000 0.00 0.00 0.00 3.51
1521 1614 6.460123 GCATTGATTATGAACAACCGAGGATT 60.460 38.462 0.00 0.00 36.26 3.01
1522 1615 5.009010 GCATTGATTATGAACAACCGAGGAT 59.991 40.000 0.00 0.00 36.26 3.24
1524 1617 4.498009 GGCATTGATTATGAACAACCGAGG 60.498 45.833 0.00 0.00 36.26 4.63
1527 1620 3.181501 ACGGCATTGATTATGAACAACCG 60.182 43.478 7.61 7.61 39.66 4.44
1528 1621 4.104776 CACGGCATTGATTATGAACAACC 58.895 43.478 0.00 0.00 36.26 3.77
1531 1624 2.098934 GGCACGGCATTGATTATGAACA 59.901 45.455 0.00 0.00 36.26 3.18
1532 1625 2.731217 GGCACGGCATTGATTATGAAC 58.269 47.619 0.00 0.00 36.26 3.18
1568 1661 1.959085 CTGGGACACACATGGTTGC 59.041 57.895 0.00 0.00 0.00 4.17
1569 1662 0.538057 AGCTGGGACACACATGGTTG 60.538 55.000 0.00 0.00 0.00 3.77
1580 1681 0.179062 CTACTGGCATCAGCTGGGAC 60.179 60.000 15.13 9.63 44.59 4.46
1584 1685 1.015109 CAAGCTACTGGCATCAGCTG 58.985 55.000 19.90 7.63 44.70 4.24
1592 1693 2.335712 GCACACCCAAGCTACTGGC 61.336 63.158 0.00 0.00 42.19 4.85
1593 1694 1.675641 GGCACACCCAAGCTACTGG 60.676 63.158 0.00 0.00 36.10 4.00
1611 1712 1.053048 CTGACGAGTACAACAGCACG 58.947 55.000 0.00 0.00 0.00 5.34
1612 1713 1.787155 CACTGACGAGTACAACAGCAC 59.213 52.381 0.00 0.00 34.25 4.40
1613 1714 1.407618 ACACTGACGAGTACAACAGCA 59.592 47.619 0.00 0.00 34.25 4.41
1614 1715 2.135664 ACACTGACGAGTACAACAGC 57.864 50.000 0.00 0.00 34.25 4.40
1615 1716 5.059343 CGATAAACACTGACGAGTACAACAG 59.941 44.000 0.00 0.00 36.58 3.16
1616 1717 4.913345 CGATAAACACTGACGAGTACAACA 59.087 41.667 0.00 0.00 0.00 3.33
1617 1718 4.201466 GCGATAAACACTGACGAGTACAAC 60.201 45.833 0.00 0.00 0.00 3.32
1618 1719 3.916172 GCGATAAACACTGACGAGTACAA 59.084 43.478 0.00 0.00 0.00 2.41
1619 1720 3.189910 AGCGATAAACACTGACGAGTACA 59.810 43.478 0.00 0.00 0.00 2.90
1620 1721 3.756069 AGCGATAAACACTGACGAGTAC 58.244 45.455 0.00 0.00 0.00 2.73
1621 1722 3.688185 AGAGCGATAAACACTGACGAGTA 59.312 43.478 0.00 0.00 0.00 2.59
1622 1723 2.488545 AGAGCGATAAACACTGACGAGT 59.511 45.455 0.00 0.00 0.00 4.18
1623 1724 2.848887 CAGAGCGATAAACACTGACGAG 59.151 50.000 0.00 0.00 0.00 4.18
1624 1725 2.863739 CAGAGCGATAAACACTGACGA 58.136 47.619 0.00 0.00 0.00 4.20
1625 1726 1.321743 GCAGAGCGATAAACACTGACG 59.678 52.381 0.00 0.00 0.00 4.35
1626 1727 2.337583 TGCAGAGCGATAAACACTGAC 58.662 47.619 0.00 0.00 0.00 3.51
1627 1728 2.741759 TGCAGAGCGATAAACACTGA 57.258 45.000 0.00 0.00 0.00 3.41
1628 1729 4.568359 AGTAATGCAGAGCGATAAACACTG 59.432 41.667 0.00 0.00 0.00 3.66
1629 1730 4.759782 AGTAATGCAGAGCGATAAACACT 58.240 39.130 0.00 0.00 0.00 3.55
1630 1731 4.806247 AGAGTAATGCAGAGCGATAAACAC 59.194 41.667 0.00 0.00 0.00 3.32
1638 1739 4.914504 CACTATACAGAGTAATGCAGAGCG 59.085 45.833 0.00 0.00 0.00 5.03
1643 1744 6.821665 GGGTTTTCACTATACAGAGTAATGCA 59.178 38.462 0.00 0.00 0.00 3.96
1645 1746 9.449719 AAAGGGTTTTCACTATACAGAGTAATG 57.550 33.333 0.00 0.00 30.73 1.90
1660 1761 6.407525 CCAACCAGACAAATAAAGGGTTTTCA 60.408 38.462 0.00 0.00 36.54 2.69
1666 1773 5.016173 TCATCCAACCAGACAAATAAAGGG 58.984 41.667 0.00 0.00 0.00 3.95
1667 1774 5.945784 TCTCATCCAACCAGACAAATAAAGG 59.054 40.000 0.00 0.00 0.00 3.11
1668 1775 7.452880 TTCTCATCCAACCAGACAAATAAAG 57.547 36.000 0.00 0.00 0.00 1.85
1669 1776 7.831691 TTTCTCATCCAACCAGACAAATAAA 57.168 32.000 0.00 0.00 0.00 1.40
1670 1777 7.831691 TTTTCTCATCCAACCAGACAAATAA 57.168 32.000 0.00 0.00 0.00 1.40
1671 1778 8.956426 GTATTTTCTCATCCAACCAGACAAATA 58.044 33.333 0.00 0.00 0.00 1.40
1672 1779 6.923199 ATTTTCTCATCCAACCAGACAAAT 57.077 33.333 0.00 0.00 0.00 2.32
1673 1780 6.072728 CGTATTTTCTCATCCAACCAGACAAA 60.073 38.462 0.00 0.00 0.00 2.83
1674 1781 5.411361 CGTATTTTCTCATCCAACCAGACAA 59.589 40.000 0.00 0.00 0.00 3.18
1675 1782 4.935205 CGTATTTTCTCATCCAACCAGACA 59.065 41.667 0.00 0.00 0.00 3.41
1676 1783 5.175859 TCGTATTTTCTCATCCAACCAGAC 58.824 41.667 0.00 0.00 0.00 3.51
1677 1784 5.414789 TCGTATTTTCTCATCCAACCAGA 57.585 39.130 0.00 0.00 0.00 3.86
1678 1785 6.683974 ATTCGTATTTTCTCATCCAACCAG 57.316 37.500 0.00 0.00 0.00 4.00
1679 1786 7.201696 GCTAATTCGTATTTTCTCATCCAACCA 60.202 37.037 0.00 0.00 0.00 3.67
1680 1787 7.132863 GCTAATTCGTATTTTCTCATCCAACC 58.867 38.462 0.00 0.00 0.00 3.77
1681 1788 6.846283 CGCTAATTCGTATTTTCTCATCCAAC 59.154 38.462 0.00 0.00 0.00 3.77
1682 1789 6.018262 CCGCTAATTCGTATTTTCTCATCCAA 60.018 38.462 0.00 0.00 0.00 3.53
1683 1790 5.465390 CCGCTAATTCGTATTTTCTCATCCA 59.535 40.000 0.00 0.00 0.00 3.41
1684 1791 5.465724 ACCGCTAATTCGTATTTTCTCATCC 59.534 40.000 0.00 0.00 0.00 3.51
1685 1792 6.526566 ACCGCTAATTCGTATTTTCTCATC 57.473 37.500 0.00 0.00 0.00 2.92
1686 1793 6.920569 AACCGCTAATTCGTATTTTCTCAT 57.079 33.333 0.00 0.00 0.00 2.90
1687 1794 6.730960 AAACCGCTAATTCGTATTTTCTCA 57.269 33.333 0.00 0.00 0.00 3.27
1688 1795 7.849515 CCTAAAACCGCTAATTCGTATTTTCTC 59.150 37.037 0.00 0.00 32.19 2.87
1689 1796 7.335171 ACCTAAAACCGCTAATTCGTATTTTCT 59.665 33.333 0.00 0.00 32.19 2.52
1690 1797 7.466805 ACCTAAAACCGCTAATTCGTATTTTC 58.533 34.615 0.00 0.00 32.19 2.29
1691 1798 7.381766 ACCTAAAACCGCTAATTCGTATTTT 57.618 32.000 0.00 0.00 33.47 1.82
1692 1799 6.990341 ACCTAAAACCGCTAATTCGTATTT 57.010 33.333 0.00 0.00 0.00 1.40
1693 1800 6.990341 AACCTAAAACCGCTAATTCGTATT 57.010 33.333 0.00 0.00 0.00 1.89
1694 1801 6.372381 ACAAACCTAAAACCGCTAATTCGTAT 59.628 34.615 0.00 0.00 0.00 3.06
1695 1802 5.700373 ACAAACCTAAAACCGCTAATTCGTA 59.300 36.000 0.00 0.00 0.00 3.43
1696 1803 4.516321 ACAAACCTAAAACCGCTAATTCGT 59.484 37.500 0.00 0.00 0.00 3.85
1697 1804 4.849383 CACAAACCTAAAACCGCTAATTCG 59.151 41.667 0.00 0.00 0.00 3.34
1698 1805 5.158494 CCACAAACCTAAAACCGCTAATTC 58.842 41.667 0.00 0.00 0.00 2.17
1699 1806 4.021807 CCCACAAACCTAAAACCGCTAATT 60.022 41.667 0.00 0.00 0.00 1.40
1700 1807 3.508402 CCCACAAACCTAAAACCGCTAAT 59.492 43.478 0.00 0.00 0.00 1.73
1701 1808 2.885894 CCCACAAACCTAAAACCGCTAA 59.114 45.455 0.00 0.00 0.00 3.09
1702 1809 2.506444 CCCACAAACCTAAAACCGCTA 58.494 47.619 0.00 0.00 0.00 4.26
1703 1810 1.324383 CCCACAAACCTAAAACCGCT 58.676 50.000 0.00 0.00 0.00 5.52
1704 1811 0.315886 CCCCACAAACCTAAAACCGC 59.684 55.000 0.00 0.00 0.00 5.68
1705 1812 1.984066 TCCCCACAAACCTAAAACCG 58.016 50.000 0.00 0.00 0.00 4.44
1706 1813 3.962063 TCTTTCCCCACAAACCTAAAACC 59.038 43.478 0.00 0.00 0.00 3.27
1707 1814 5.601583 TTCTTTCCCCACAAACCTAAAAC 57.398 39.130 0.00 0.00 0.00 2.43
1708 1815 5.663556 ACATTCTTTCCCCACAAACCTAAAA 59.336 36.000 0.00 0.00 0.00 1.52
1709 1816 5.212745 ACATTCTTTCCCCACAAACCTAAA 58.787 37.500 0.00 0.00 0.00 1.85
1710 1817 4.810345 ACATTCTTTCCCCACAAACCTAA 58.190 39.130 0.00 0.00 0.00 2.69
1711 1818 4.463050 ACATTCTTTCCCCACAAACCTA 57.537 40.909 0.00 0.00 0.00 3.08
1712 1819 3.328535 ACATTCTTTCCCCACAAACCT 57.671 42.857 0.00 0.00 0.00 3.50
1713 1820 5.738619 ATAACATTCTTTCCCCACAAACC 57.261 39.130 0.00 0.00 0.00 3.27
1714 1821 7.123547 TCCATATAACATTCTTTCCCCACAAAC 59.876 37.037 0.00 0.00 0.00 2.93
1715 1822 7.185565 TCCATATAACATTCTTTCCCCACAAA 58.814 34.615 0.00 0.00 0.00 2.83
1716 1823 6.736581 TCCATATAACATTCTTTCCCCACAA 58.263 36.000 0.00 0.00 0.00 3.33
1717 1824 6.334378 TCCATATAACATTCTTTCCCCACA 57.666 37.500 0.00 0.00 0.00 4.17
1718 1825 7.234355 AGATCCATATAACATTCTTTCCCCAC 58.766 38.462 0.00 0.00 0.00 4.61
1719 1826 7.406620 AGATCCATATAACATTCTTTCCCCA 57.593 36.000 0.00 0.00 0.00 4.96
1720 1827 8.712228 AAAGATCCATATAACATTCTTTCCCC 57.288 34.615 0.00 0.00 29.87 4.81
1754 1861 2.210116 GTCAGGCTTGAACTCAACGAA 58.790 47.619 0.00 0.00 34.49 3.85
1755 1862 1.865865 GTCAGGCTTGAACTCAACGA 58.134 50.000 0.00 0.00 34.49 3.85
1760 1867 1.347817 CGCTCGTCAGGCTTGAACTC 61.348 60.000 0.00 0.00 34.49 3.01
1769 1876 5.104562 TGTAGAATATTACGCTCGTCAGG 57.895 43.478 0.00 0.00 0.00 3.86
1797 1904 5.337169 GGCAGGTCACAAAATAAATGGCTTA 60.337 40.000 0.00 0.00 0.00 3.09
1800 1907 3.261580 GGCAGGTCACAAAATAAATGGC 58.738 45.455 0.00 0.00 0.00 4.40
1801 1908 3.260380 TGGGCAGGTCACAAAATAAATGG 59.740 43.478 0.00 0.00 0.00 3.16
1813 1920 1.228245 GCAGAAAGTGGGCAGGTCA 60.228 57.895 0.00 0.00 0.00 4.02
1818 1925 0.840288 TCCTAGGCAGAAAGTGGGCA 60.840 55.000 2.96 0.00 0.00 5.36
1819 1926 0.548510 ATCCTAGGCAGAAAGTGGGC 59.451 55.000 2.96 0.00 0.00 5.36
1827 1934 8.648693 GGACTAGTAAATAAAATCCTAGGCAGA 58.351 37.037 2.96 0.00 35.81 4.26
1830 1937 9.848710 AAAGGACTAGTAAATAAAATCCTAGGC 57.151 33.333 2.96 0.00 33.95 3.93
1862 1969 4.556501 GCATTCGACATTCAACACCTTTGA 60.557 41.667 0.00 0.00 0.00 2.69
1866 1973 2.783135 AGCATTCGACATTCAACACCT 58.217 42.857 0.00 0.00 0.00 4.00
1868 1975 3.670055 CCAAAGCATTCGACATTCAACAC 59.330 43.478 0.00 0.00 0.00 3.32
1869 1976 3.856638 GCCAAAGCATTCGACATTCAACA 60.857 43.478 0.00 0.00 39.53 3.33
1870 1977 2.663119 GCCAAAGCATTCGACATTCAAC 59.337 45.455 0.00 0.00 39.53 3.18
1871 1978 2.295629 TGCCAAAGCATTCGACATTCAA 59.704 40.909 0.00 0.00 46.52 2.69
1872 1979 1.885233 TGCCAAAGCATTCGACATTCA 59.115 42.857 0.00 0.00 46.52 2.57
1873 1980 2.634982 TGCCAAAGCATTCGACATTC 57.365 45.000 0.00 0.00 46.52 2.67
1897 2004 0.539986 TTACTTCATCTGACCCGGGC 59.460 55.000 24.08 14.70 0.00 6.13
1928 3046 6.878923 CCAAGACACTGATAAGTTGGTCAATA 59.121 38.462 4.04 0.00 31.59 1.90
1932 3050 4.894784 TCCAAGACACTGATAAGTTGGTC 58.105 43.478 0.00 0.00 36.59 4.02
1933 3051 4.974645 TCCAAGACACTGATAAGTTGGT 57.025 40.909 0.00 0.00 36.59 3.67
1934 3052 7.042456 CGATTATCCAAGACACTGATAAGTTGG 60.042 40.741 0.00 0.00 35.20 3.77
1935 3053 7.042456 CCGATTATCCAAGACACTGATAAGTTG 60.042 40.741 0.00 0.00 35.20 3.16
1938 3056 5.406780 GCCGATTATCCAAGACACTGATAAG 59.593 44.000 0.00 0.00 35.20 1.73
1949 3067 3.466836 TGCTTACAGCCGATTATCCAAG 58.533 45.455 0.00 0.00 41.51 3.61
1952 3070 3.619038 GCTATGCTTACAGCCGATTATCC 59.381 47.826 0.00 0.00 41.51 2.59
1961 3079 2.547211 CAGTCATGGCTATGCTTACAGC 59.453 50.000 0.00 0.00 42.82 4.40
1962 3080 3.136763 CCAGTCATGGCTATGCTTACAG 58.863 50.000 0.00 0.00 40.52 2.74
1978 3106 1.079543 AGTGCGCATGACTCCAGTC 60.080 57.895 15.91 0.00 44.97 3.51
2020 3152 7.687941 ATCCATTCTACTTAACTTGTTGTGG 57.312 36.000 0.00 0.00 0.00 4.17
2021 3153 9.612620 GAAATCCATTCTACTTAACTTGTTGTG 57.387 33.333 0.00 0.00 35.04 3.33
2026 3158 9.626045 GGTTTGAAATCCATTCTACTTAACTTG 57.374 33.333 0.00 0.00 38.92 3.16
2028 3160 8.934023 TGGTTTGAAATCCATTCTACTTAACT 57.066 30.769 0.00 0.00 38.92 2.24
2037 3412 6.863126 CACACTAGTTGGTTTGAAATCCATTC 59.137 38.462 0.00 0.00 38.60 2.67
2040 3415 5.441500 TCACACTAGTTGGTTTGAAATCCA 58.558 37.500 0.00 0.00 0.00 3.41
2062 3437 1.576356 AAGCGCCGAGAAAGATCATC 58.424 50.000 2.29 0.00 0.00 2.92
2078 3456 4.495422 TCAAAGAAGATCCACGAGTAAGC 58.505 43.478 0.00 0.00 0.00 3.09
2186 3601 5.057149 AGTGTTTAGATATGTCCCGAATGC 58.943 41.667 0.00 0.00 0.00 3.56
2207 3622 3.138468 ACCAGGGAGCAAACTCTTTAAGT 59.862 43.478 0.00 0.00 42.98 2.24
2209 3624 3.394606 AGACCAGGGAGCAAACTCTTTAA 59.605 43.478 0.00 0.00 42.98 1.52
2259 3674 6.458070 GGCTTTACACATTGTTGCACAAAATT 60.458 34.615 5.94 0.00 41.96 1.82
2310 3727 3.947834 GCAGCCTAACCAGAATATGTTGT 59.052 43.478 0.00 0.00 0.00 3.32
2315 3732 4.493618 TCCTAGCAGCCTAACCAGAATAT 58.506 43.478 0.00 0.00 0.00 1.28
2340 3757 7.989741 CAGATCTTTATTTCCAGTGTCCATAGT 59.010 37.037 0.00 0.00 0.00 2.12
2365 3783 8.849168 CCAGGAATTTAATTATCAGCACATACA 58.151 33.333 0.00 0.00 0.00 2.29
2366 3784 8.299570 CCCAGGAATTTAATTATCAGCACATAC 58.700 37.037 0.00 0.00 0.00 2.39
2367 3785 7.039784 GCCCAGGAATTTAATTATCAGCACATA 60.040 37.037 0.00 0.00 0.00 2.29
2368 3786 6.239402 GCCCAGGAATTTAATTATCAGCACAT 60.239 38.462 0.00 0.00 0.00 3.21
2409 3827 3.059884 CCATGTTCGATGATAAGACGGG 58.940 50.000 0.00 0.00 0.00 5.28
2410 3828 3.977427 TCCATGTTCGATGATAAGACGG 58.023 45.455 0.00 0.00 0.00 4.79
2441 3870 5.445939 CGGAAAACATACGGTCTCAAATCAG 60.446 44.000 0.00 0.00 0.00 2.90
2442 3871 4.390603 CGGAAAACATACGGTCTCAAATCA 59.609 41.667 0.00 0.00 0.00 2.57
2449 3878 3.244318 ACCTTTCGGAAAACATACGGTCT 60.244 43.478 4.53 0.00 0.00 3.85
2454 3883 5.569413 CAGCATACCTTTCGGAAAACATAC 58.431 41.667 4.53 0.00 0.00 2.39
2462 3898 2.108168 ACTAGCAGCATACCTTTCGGA 58.892 47.619 0.00 0.00 0.00 4.55
2470 3906 6.969828 ACTCAAACTAAACTAGCAGCATAC 57.030 37.500 0.00 0.00 0.00 2.39
2487 3923 7.618502 TGCAACAGTTAAGTAAGAACTCAAA 57.381 32.000 0.00 0.00 34.90 2.69
2501 3937 5.811399 GCATACAAGGTATGCAACAGTTA 57.189 39.130 27.47 0.00 46.89 2.24
2551 4078 7.597386 TCTATCCAGTCAGATTAATCATCACG 58.403 38.462 17.56 3.21 33.75 4.35
2568 4095 3.285484 AGGCATGCAAAGTTCTATCCAG 58.715 45.455 21.36 0.00 0.00 3.86
2571 4098 4.970662 TCAAGGCATGCAAAGTTCTATC 57.029 40.909 21.36 0.00 0.00 2.08
2572 4099 5.717119 CTTTCAAGGCATGCAAAGTTCTAT 58.283 37.500 21.36 0.00 0.00 1.98
2575 4102 2.477754 GCTTTCAAGGCATGCAAAGTTC 59.522 45.455 21.36 5.25 32.95 3.01
2581 4108 1.138464 TGTTTGCTTTCAAGGCATGCA 59.862 42.857 21.36 0.00 39.54 3.96
2582 4109 1.868469 TGTTTGCTTTCAAGGCATGC 58.132 45.000 9.90 9.90 39.54 4.06
2584 4111 3.575256 TCAGATGTTTGCTTTCAAGGCAT 59.425 39.130 0.00 0.00 39.54 4.40
2596 4124 6.171921 AGAAGGAGAATCAGTCAGATGTTTG 58.828 40.000 0.00 0.00 36.96 2.93
2599 4127 4.405358 GGAGAAGGAGAATCAGTCAGATGT 59.595 45.833 0.00 0.00 36.96 3.06
2605 4133 3.513515 ACACAGGAGAAGGAGAATCAGTC 59.486 47.826 0.00 0.00 36.25 3.51
2610 4138 3.073650 AGCAAACACAGGAGAAGGAGAAT 59.926 43.478 0.00 0.00 0.00 2.40
2615 4143 1.151668 CGAGCAAACACAGGAGAAGG 58.848 55.000 0.00 0.00 0.00 3.46
2619 4147 1.528586 CAGTTCGAGCAAACACAGGAG 59.471 52.381 1.01 0.00 0.00 3.69
2621 4149 1.299541 ACAGTTCGAGCAAACACAGG 58.700 50.000 1.01 0.00 0.00 4.00
2660 4189 6.183360 CCTCGTCTTTCATCTTTTTATCCCAC 60.183 42.308 0.00 0.00 0.00 4.61
2735 4267 0.459411 GTTTGCCACAACAAACGGCT 60.459 50.000 4.57 0.00 46.95 5.52
2753 4285 6.326583 TCTTTATATCATGAGTTCCTTCCCGT 59.673 38.462 0.09 0.00 0.00 5.28
2785 4317 5.050490 CGGGAGACTAGTTTCATTGTATGG 58.950 45.833 14.78 0.00 0.00 2.74
2787 4319 5.934402 ACGGGAGACTAGTTTCATTGTAT 57.066 39.130 14.78 0.00 0.00 2.29
2788 4320 5.733620 AACGGGAGACTAGTTTCATTGTA 57.266 39.130 14.78 0.00 0.00 2.41
2804 4338 1.135333 GCCTTGTCAAACAAAACGGGA 59.865 47.619 0.00 0.00 37.69 5.14
2806 4340 1.134965 TGGCCTTGTCAAACAAAACGG 60.135 47.619 3.32 0.00 37.69 4.44
2807 4341 2.285827 TGGCCTTGTCAAACAAAACG 57.714 45.000 3.32 0.00 37.69 3.60
2808 4342 2.351418 GCTTGGCCTTGTCAAACAAAAC 59.649 45.455 3.32 0.00 37.69 2.43
2819 4353 3.841643 CTTAATCAACAGCTTGGCCTTG 58.158 45.455 3.32 0.00 0.00 3.61
2820 4354 2.232208 GCTTAATCAACAGCTTGGCCTT 59.768 45.455 3.32 0.00 32.87 4.35
2841 4375 4.815040 CTTATTCAGGAAGAGCAGCATG 57.185 45.455 0.00 0.00 40.87 4.06
3114 4662 1.620822 ATGGCCTTTTCTGTCACACC 58.379 50.000 3.32 0.00 0.00 4.16
3261 5678 1.335780 TGCAATCAAACATGGTGCGAC 60.336 47.619 0.00 0.00 38.05 5.19
3353 5772 7.602517 GAGTATCGCCTTTGCTATTTGATAT 57.397 36.000 0.00 0.00 34.43 1.63
3372 5792 4.594970 AGCATAGACTAGATGGCGAGTAT 58.405 43.478 0.00 0.00 29.61 2.12
3385 5805 3.328382 TGCAAACGGTTAGCATAGACT 57.672 42.857 6.27 0.00 32.55 3.24
3429 5849 3.298686 TCCATAGAGACGATCCACTGT 57.701 47.619 0.00 0.00 0.00 3.55
3430 5850 4.078537 AGATCCATAGAGACGATCCACTG 58.921 47.826 0.00 0.00 34.22 3.66
3432 5852 3.823873 ACAGATCCATAGAGACGATCCAC 59.176 47.826 0.00 0.00 34.22 4.02
3433 5853 4.105754 ACAGATCCATAGAGACGATCCA 57.894 45.455 0.00 0.00 34.22 3.41
3434 5854 4.321601 CCAACAGATCCATAGAGACGATCC 60.322 50.000 0.00 0.00 34.22 3.36
3435 5855 4.321601 CCCAACAGATCCATAGAGACGATC 60.322 50.000 0.00 0.00 33.96 3.69
3438 5858 2.036475 CCCCAACAGATCCATAGAGACG 59.964 54.545 0.00 0.00 0.00 4.18
3444 5864 2.505407 CAGTGTCCCCAACAGATCCATA 59.495 50.000 0.00 0.00 38.97 2.74
3472 5892 5.306937 TCCTTCCTCTTGTAAGTGATTCACA 59.693 40.000 18.57 0.00 36.74 3.58
3475 5895 6.231211 TGTTCCTTCCTCTTGTAAGTGATTC 58.769 40.000 0.00 0.00 0.00 2.52
3476 5896 6.187727 TGTTCCTTCCTCTTGTAAGTGATT 57.812 37.500 0.00 0.00 0.00 2.57
3479 5899 5.335191 GCAATGTTCCTTCCTCTTGTAAGTG 60.335 44.000 0.00 0.00 0.00 3.16
3482 5902 4.724399 TGCAATGTTCCTTCCTCTTGTAA 58.276 39.130 0.00 0.00 0.00 2.41
3517 5937 3.520569 GTTTTGCCTGACACACAAATGT 58.479 40.909 0.00 0.00 40.80 2.71
3518 5938 2.865551 GGTTTTGCCTGACACACAAATG 59.134 45.455 0.00 0.00 33.62 2.32
3520 5940 1.205893 GGGTTTTGCCTGACACACAAA 59.794 47.619 0.00 0.00 37.43 2.83
3523 5943 1.607148 GTAGGGTTTTGCCTGACACAC 59.393 52.381 0.00 0.00 37.43 3.82
3524 5944 1.213182 TGTAGGGTTTTGCCTGACACA 59.787 47.619 0.00 0.00 37.43 3.72
3526 5946 2.582052 CTTGTAGGGTTTTGCCTGACA 58.418 47.619 0.00 0.00 37.43 3.58
3528 5948 1.821666 GCCTTGTAGGGTTTTGCCTGA 60.822 52.381 0.00 0.00 35.37 3.86
3529 5949 0.603065 GCCTTGTAGGGTTTTGCCTG 59.397 55.000 0.00 0.00 35.37 4.85
3539 5959 1.005924 ACATTTCCCCTGCCTTGTAGG 59.994 52.381 0.00 0.00 38.80 3.18
3540 5960 2.094675 CACATTTCCCCTGCCTTGTAG 58.905 52.381 0.00 0.00 0.00 2.74
3541 5961 1.272425 CCACATTTCCCCTGCCTTGTA 60.272 52.381 0.00 0.00 0.00 2.41
3543 5963 1.891722 GCCACATTTCCCCTGCCTTG 61.892 60.000 0.00 0.00 0.00 3.61
3546 5966 2.037847 AGCCACATTTCCCCTGCC 59.962 61.111 0.00 0.00 0.00 4.85
3547 5967 2.054453 GGAGCCACATTTCCCCTGC 61.054 63.158 0.00 0.00 0.00 4.85
3548 5968 0.394899 GAGGAGCCACATTTCCCCTG 60.395 60.000 0.00 0.00 33.83 4.45
3549 5969 0.551131 AGAGGAGCCACATTTCCCCT 60.551 55.000 0.00 0.00 33.83 4.79
3550 5970 0.106967 GAGAGGAGCCACATTTCCCC 60.107 60.000 0.00 0.00 33.83 4.81
3551 5971 0.620556 TGAGAGGAGCCACATTTCCC 59.379 55.000 0.00 0.00 33.83 3.97
3552 5972 1.680249 GGTGAGAGGAGCCACATTTCC 60.680 57.143 0.00 0.00 35.13 3.13
3553 5973 1.680249 GGGTGAGAGGAGCCACATTTC 60.680 57.143 0.00 0.00 35.13 2.17
3554 5974 0.329596 GGGTGAGAGGAGCCACATTT 59.670 55.000 0.00 0.00 35.13 2.32
3557 5977 1.059584 TTTGGGTGAGAGGAGCCACA 61.060 55.000 0.00 0.00 43.22 4.17
3558 5978 0.322008 CTTTGGGTGAGAGGAGCCAC 60.322 60.000 0.00 0.00 43.22 5.01
3560 5980 1.377856 GCTTTGGGTGAGAGGAGCC 60.378 63.158 0.00 0.00 0.00 4.70
3561 5981 0.034670 ATGCTTTGGGTGAGAGGAGC 60.035 55.000 0.00 0.00 0.00 4.70
3563 5983 0.322816 GCATGCTTTGGGTGAGAGGA 60.323 55.000 11.37 0.00 0.00 3.71
3564 5984 0.323178 AGCATGCTTTGGGTGAGAGG 60.323 55.000 16.30 0.00 0.00 3.69
3565 5985 2.408271 TAGCATGCTTTGGGTGAGAG 57.592 50.000 28.02 0.00 0.00 3.20
3567 5987 2.557924 TGTTTAGCATGCTTTGGGTGAG 59.442 45.455 28.02 0.00 0.00 3.51
3569 5989 2.950433 CTGTTTAGCATGCTTTGGGTG 58.050 47.619 28.02 8.60 0.00 4.61
3582 6002 6.293298 GCTATGATGATGTTGAGGCTGTTTAG 60.293 42.308 0.00 0.00 0.00 1.85
3584 6004 4.337555 GCTATGATGATGTTGAGGCTGTTT 59.662 41.667 0.00 0.00 0.00 2.83
3585 6005 3.881688 GCTATGATGATGTTGAGGCTGTT 59.118 43.478 0.00 0.00 0.00 3.16
3586 6006 3.136077 AGCTATGATGATGTTGAGGCTGT 59.864 43.478 0.00 0.00 0.00 4.40
3587 6007 3.498777 CAGCTATGATGATGTTGAGGCTG 59.501 47.826 0.00 0.00 38.57 4.85
3588 6008 3.136077 ACAGCTATGATGATGTTGAGGCT 59.864 43.478 0.00 0.00 32.16 4.58
3590 6010 5.925397 GTCTACAGCTATGATGATGTTGAGG 59.075 44.000 0.00 0.00 38.33 3.86
3591 6011 6.510536 TGTCTACAGCTATGATGATGTTGAG 58.489 40.000 0.00 0.00 38.33 3.02
3592 6012 6.469782 TGTCTACAGCTATGATGATGTTGA 57.530 37.500 0.00 0.00 37.72 3.18
3593 6013 7.573627 CAATGTCTACAGCTATGATGATGTTG 58.426 38.462 0.00 0.00 37.72 3.33
3594 6014 6.204301 GCAATGTCTACAGCTATGATGATGTT 59.796 38.462 0.00 0.00 37.72 2.71
3596 6016 5.932883 AGCAATGTCTACAGCTATGATGATG 59.067 40.000 0.00 0.00 35.19 3.07
3597 6017 6.111669 AGCAATGTCTACAGCTATGATGAT 57.888 37.500 0.00 0.00 35.19 2.45
3598 6018 5.069516 TGAGCAATGTCTACAGCTATGATGA 59.930 40.000 0.00 0.00 37.48 2.92
3599 6019 5.295152 TGAGCAATGTCTACAGCTATGATG 58.705 41.667 0.00 0.00 37.48 3.07
3600 6020 5.511031 CCTGAGCAATGTCTACAGCTATGAT 60.511 44.000 0.00 0.00 37.48 2.45
3601 6021 4.202192 CCTGAGCAATGTCTACAGCTATGA 60.202 45.833 0.00 0.00 37.48 2.15
3602 6022 4.056740 CCTGAGCAATGTCTACAGCTATG 58.943 47.826 0.00 0.00 37.48 2.23
3604 6024 3.099905 ACCTGAGCAATGTCTACAGCTA 58.900 45.455 0.00 0.00 37.48 3.32
3606 6026 2.393271 ACCTGAGCAATGTCTACAGC 57.607 50.000 0.00 0.00 0.00 4.40
3609 6029 2.668457 CGTCAACCTGAGCAATGTCTAC 59.332 50.000 0.00 0.00 0.00 2.59
3610 6030 2.299013 ACGTCAACCTGAGCAATGTCTA 59.701 45.455 0.00 0.00 0.00 2.59
3611 6031 1.070758 ACGTCAACCTGAGCAATGTCT 59.929 47.619 0.00 0.00 0.00 3.41
3612 6032 1.512926 ACGTCAACCTGAGCAATGTC 58.487 50.000 0.00 0.00 0.00 3.06
3615 6035 2.094762 GGTACGTCAACCTGAGCAAT 57.905 50.000 0.00 0.00 36.53 3.56
3616 6036 3.599412 GGTACGTCAACCTGAGCAA 57.401 52.632 0.00 0.00 36.53 3.91
3643 6063 0.744414 TGCTCTATTTGGCGAGGTGC 60.744 55.000 0.00 0.00 45.38 5.01
3644 6064 1.737838 TTGCTCTATTTGGCGAGGTG 58.262 50.000 0.00 0.00 0.00 4.00
3645 6065 2.488153 GTTTTGCTCTATTTGGCGAGGT 59.512 45.455 0.00 0.00 0.00 3.85
3647 6067 2.487762 TGGTTTTGCTCTATTTGGCGAG 59.512 45.455 0.00 0.00 0.00 5.03
3648 6068 2.227865 GTGGTTTTGCTCTATTTGGCGA 59.772 45.455 0.00 0.00 0.00 5.54
3649 6069 2.030363 TGTGGTTTTGCTCTATTTGGCG 60.030 45.455 0.00 0.00 0.00 5.69
3651 6071 4.582701 TGTGTGGTTTTGCTCTATTTGG 57.417 40.909 0.00 0.00 0.00 3.28
3652 6072 5.771469 TGATGTGTGGTTTTGCTCTATTTG 58.229 37.500 0.00 0.00 0.00 2.32
3653 6073 6.040842 ACTTGATGTGTGGTTTTGCTCTATTT 59.959 34.615 0.00 0.00 0.00 1.40
3654 6074 5.536161 ACTTGATGTGTGGTTTTGCTCTATT 59.464 36.000 0.00 0.00 0.00 1.73
3655 6075 5.072741 ACTTGATGTGTGGTTTTGCTCTAT 58.927 37.500 0.00 0.00 0.00 1.98
3656 6076 4.460263 ACTTGATGTGTGGTTTTGCTCTA 58.540 39.130 0.00 0.00 0.00 2.43
3657 6077 3.290710 ACTTGATGTGTGGTTTTGCTCT 58.709 40.909 0.00 0.00 0.00 4.09
3658 6078 3.715628 ACTTGATGTGTGGTTTTGCTC 57.284 42.857 0.00 0.00 0.00 4.26
3659 6079 3.195396 ACAACTTGATGTGTGGTTTTGCT 59.805 39.130 0.00 0.00 30.82 3.91
3660 6080 3.520569 ACAACTTGATGTGTGGTTTTGC 58.479 40.909 0.00 0.00 30.82 3.68
3662 6082 5.163561 CCACTACAACTTGATGTGTGGTTTT 60.164 40.000 16.39 0.00 41.88 2.43
3664 6084 3.882888 CCACTACAACTTGATGTGTGGTT 59.117 43.478 16.39 0.00 41.88 3.67
3665 6085 3.476552 CCACTACAACTTGATGTGTGGT 58.523 45.455 16.39 2.82 41.88 4.16
3668 6088 3.118038 ACACCCACTACAACTTGATGTGT 60.118 43.478 13.58 0.00 34.75 3.72
3669 6089 3.476552 ACACCCACTACAACTTGATGTG 58.523 45.455 0.00 4.25 34.75 3.21
3670 6090 3.496160 GGACACCCACTACAACTTGATGT 60.496 47.826 0.00 0.00 37.32 3.06
3671 6091 3.074412 GGACACCCACTACAACTTGATG 58.926 50.000 0.00 0.00 0.00 3.07
3672 6092 2.708861 TGGACACCCACTACAACTTGAT 59.291 45.455 0.00 0.00 37.58 2.57
3673 6093 2.120312 TGGACACCCACTACAACTTGA 58.880 47.619 0.00 0.00 37.58 3.02
3674 6094 2.616842 GTTGGACACCCACTACAACTTG 59.383 50.000 0.00 0.00 43.41 3.16
3675 6095 2.422377 GGTTGGACACCCACTACAACTT 60.422 50.000 0.00 0.00 43.41 2.66
3676 6096 1.142262 GGTTGGACACCCACTACAACT 59.858 52.381 0.00 0.00 43.41 3.16
3677 6097 1.601166 GGTTGGACACCCACTACAAC 58.399 55.000 0.00 0.00 43.41 3.32
3687 6107 3.744660 ACTTGAATCAGAGGTTGGACAC 58.255 45.455 0.00 0.00 0.00 3.67
3689 6109 4.008074 TGACTTGAATCAGAGGTTGGAC 57.992 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.