>input_sequence_44841
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--------------------ATGACGGGGGGGAAGATGGCGGCGGCGACGGCGGCGAAGTGGGCGGAGGGGTACCCGTGG
AAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTGGGCGCGTGGAAGCCGCT
GGGGATCAGCGGGCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCC
GCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTGAGAAG----CCCTGCCCCC
CATTCCCTCCGTTCCTACTCCTCCTCGCGATCTGCT-----GCCGTTTCTCTTCTCGATGCCTGGTTGATTTGGTTTGGT
TC----------GTTTCTGCAGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAG
GTTCGCCTCCTCGCCCCTCATCCTTCCTGTTGTTAT-----------CCATTTGCCATCCA--GTGCCTGCACATTGCAG
TTGCGTAGCAATCAATCCTCGGTTGTTCATAATCAATGCCGTGCCGAGCAATCCTTGTATGC--------AACCATGTGT
GTCCCAGCTGATGCCAGTAGCTTGGGTGTGCCGTGCTGTTGTACTCGTCAGTGTTTATCGCTCTGCATTACTCTGTATAG
TGAAA------ACCCTTTATTTGTCTGGTTGGATGAGAAAATACGAATTAGCGGTTTTAGGTTTGTGGGGAAAGAATGTT
ATATGGATCTTTCCTTTTTTTTCGTTGAGTTCAAGCCTGACGAGCGTAATATTCTACAACTAATAAGCCATTTATTTTGT
GACCTGCCCACTTTCTGCCTAGGATTTTATTTACTAGTCCTTTATATTTCAAAGGTGTTGAATGTCGAATGCTTTGGCAA
TTTGCCCGGGTCAGATGAAGTAATATA-----------------------------------------------------
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------------------------------------------------------------------------------AT
AATAATATTGACCAACTTATCAGTGTCTTGGATAATCGGC----------TGTAAGCATAGCCATGACTGGAGTCATGCG
CACTGCAGCGGA----CATTGCTTAGATAAGCCACAACAAGT--------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGTA--------------------------------------------
---------------------------------------------------GAATGGATTTCAAACCAACTAGTGTGATG
ATC---TTTCTCGGCGCTTACTCGTGGATCTTCTTTGAAAATCAACATT--TATCT------------------CAGCAT
GAGATACTTAGGCTGCAGCTGGACCTTTA-----------------GTTGCTGGCATAGCATTCGAATCAGCGTGATTCA
GCATTCGGGACATATCTAAACACTTAAAGAGTTTGCTCCCTGGTCTTATGAGTTCACAAGAGCTTGCACTATAAATTTTG
TGCAACAATGTGTAAAGCCCAATAA--GCTTGCTTGTAAGATGAGAACAACATATTCTGGTTAGGCTGCTAGGATGACTA
TGGA-CACTGGAAATAAAGATCTGTATGTGCTGATAATTAAATTCCTGGGCAACTGCTAGTTATAGCCCGTCTTATCATC
GAACATGGATA-----AA------ATGGCCTGATTTGAGACCGTATG-------TTTTCCGAAAGGTATGCTGCTAGTTT
AGTTTGAGTTCTTACTTAACTGTTGCATACC-------------------------------------------------
-------------------------TTGTATGCTTTAAGGCTAAATG-----------------TTCTGATCACTATCGT
GATGATTAATCTGACTGGATAGAACTTTGCA-TGCCTTGAAAGCAAACATCTGACTGATTCTCCTTCTC-CTGTGTTTGC
TCGAACTGTTGTTTCTTCAGAAACGTAGGTGGGATAAAAAGATGAAAGACGAGGAGGCAGCGGCAGCAAAGGCTACTTAG
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>chr1D_1_TraesCS1D01G041300
TGGCATGAACCTAACAACAAATGAGGTATTCTAACACAAAAGCACCAAATTCGACCAAATTCGGAGCGTTAACTCACCTG
TCGTCTGGCACGGCCGGATCAGCGCCGGCCACTTCCACGTCCTGCTCCTCCGCCTCTTCATCAGACTTCTTGTTCGCCGC
CGCCTCCGCCTCCATCAGTCTCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTCCCTCCGCCGCATCACCT
CCGCCTTCTGCGCCAGGGCCGCCTCGTCCACCT---CCAGCTCCTCCAGGTCCTCAGCACCGTCAGCTTCAAGGCCCTGC
TTCCCCGGCTCTTCCTCGGACTTCTTGTTCGCGGCGGCCTCCGCCTCCGCCAACTTCCTCGCCCGCATCTTCTCCTTCTT
CTTCTTCCTCTTCTCCTTCTCCTCCTTCCTCCTCTCCTTCCTCCGTCGCTCCAGCTCCGCCTTCGACGCAGGTTCCCCCT
CG---CCCACGGCAGGCTCCTCCAGGCCCTCCGCAACGTCCACCGCCGGCT---------------CCTCCTCCGCCTTC
TCCTCCGGGTCCTCCACGTCCACCGCCGGAGCGGGTGACTTCTCCGGAGACGCCTTCTTGTTCTTGGCACTCTTGGTCCG
GGGAGGGCGGGGCCCCGGACGCTTGGGCCGGGGCCGCTTGGAGGCCACCAGCCGCACCTTTATCTTCCTCGCCTCCGCGG
CGGCCTCCCCCTCGGCGCCCCCGCCGGGGAGGAGCGTGTGGAGCTTCTGCTTCAGCTTCTTGCGGGCGAGCACCATGGCG
GCGGCGGCGAGGTTTTTG---------GTTGAGAAAGAAAGAGTGGGGAGAGGAAGAGAGGGCGAGACGAGACGAGACGG
CAAGGTTTATATTGGGCCGGGCTGATATGGGCCGTAC----ACGAAACATGCGGCTCGGCCCATCAA----------GGC
CCGACGGGAGATCGATCTCTTCTCAGCTCTCCTCTTACCCT--------AGCCGCCGCCGCCGACGTGGAGCAGAGCAGC
AGAGCGAACAC--------GATGACGGGGGGGAAGATGGCGGCGGCGACGGCGGCGAAGTGGGCGGAGGGGTACCCGTGG
AAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTGGGCGCGTGGAAGCCGCT
GGGGATCAGCGGGCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCC
GCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTGAGAAG----CCCTGCCCCC
CATTCCCTCCGTTCCTACTCCTCCTCGCGATCTGCT-----GCCGTTTCTCTTCTCGATGCCTGGTTGATTTGGTTTGGT
TC----------GTTTCTGCAGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAG
GTTCGCCTCCTCGCCCCTCATCCTTCCTGTTGTTAT-----------CCATTTGCCATCCA--GTGCCTGCACATTGCAG
TTGCGTAGCAATCAATCCTCGGTTGTTCATAATCAATGCCGTGCCGAGCAATCCTTGTATGC--------AACCATGTGT
GTCCCAGCTGATGCCAGTAGCTTGGGTGTGCCGTGCTGTTGTACTCGTCAGTGTTTATCGCTCTGCATTACTCTGTATAG
TGAAA------ACCCTTTATTTGTCTGGTTGGATGAGAAAATACGAATTAGCGGTTTTAGGTTTGTGGGGAAAGAATGTT
ATATGGATCTTTCCTTTTTTTTCGTTGAGTTCAAGCCTGACGAGCGTAATATTCTACAACTAATAAGCCATTTATTTTGT
GACCTGCCCACTTTCTGCCTAGGATTTTATTTACTAGTCCTTTATATTTCAAAGGTGTTGAATGTCGAATGCTTTGGCAA
TTTGCCCGGGTCAGATGAAGTAATATA-----------------------------------------------------
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------------------------------------------------------------------------------AT
AATAATATTGACCAACTTATCAGTGTCTTGGATAATCGGC----------TGTAAGCATAGCCATGACTGGAGTCATGCG
CACTGCAGCGGA----CATTGCTTAGATAAGCCACAACAAGT--------------------------------------
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------------------------------TAAGTA--------------------------------------------
---------------------------------------------------GAATGGATTTCAAACCAACTAGTGTGATG
ATC---TTTCTCGGCGCTTACTCGTGGATCTTCTTTGAAAATCAACATT--TATCT------------------CAGCAT
GAGATACTTAGGCTGCAGCTGGACCTTTA-----------------GTTGCTGGCATAGCATTCGAATCAGCGTGATTCA
GCATTCGGGACATATCTAAACACTTAAAGAGTTTGCTCCCTGGTCTTATGAGTTCACAAGAGCTTGCACTATAAATTTTG
TGCAACAATGTGTAAAGCCCAATAA--GCTTGCTTGTAAGATGAGAACAACATATTCTGGTTAGGCTGCTAGGATGACTA
TGGA-CACTGGAAATAAAGATCTGTATGTGCTGATAATTAAATTCCTGGGCAACTGCTAGTTATAGCCCGTCTTATCATC
GAACATGGATA-----AA------ATGGCCTGATTTGAGACCGTATG-------TTTTCCGAAAGGTATGCTGCTAGTTT
AGTTTGAGTTCTTACTTAACTGTTGCATACC-------------------------------------------------
-------------------------TTGTATGCTTTAAGGCTAAATG-----------------TTCTGATCACTATCGT
GATGATTAATCTGACTGGATAGAACTTTGCA-TGCCTTGAAAGCAAACATCTGACTGATTCTCCTTCTC-CTGTGTTTGC
TCGAACTGTTGTTTCTTCAGAAACGTAGGTGGGATAAAAAGATGAAAGACGAGGAGGCAGCGGCAGCAAAGGCTACTTAG
---GGGGACTGGCCTGCTGGTGACTCAGCCGTTTGTTGTGGCAAACGGGAAGGAACTCATGATATAAAGATATTCTCCAT
ACAATGAAACTAG--TCTCCCGTTTTGTTTGACAAGGCCAAGCTGTTGATTAAGCATGCTGCTCTTCCTGAATAAGGTCG
AAGGGAGTGTAATGTAGGAAGTTCATAGGCTTATTGG--CTTGCGGTCTTTTTCGCCTTGCTGC---TTTCCAGCTCTAG
TGCCACCTGCCACACTTTGGAATGCA-TTTTTTTCTATAACATCGGTCATATAATCAGGATTCTAGCCTGG-CCCAACCT
GCATTGAACCCAACTTGTTTGCTGAAACAGATCAAAATTATGAGTGTGTTTGTTAGTTATTCTCATG-------TATCAT
TGGCACTGCAGGGTTTCTTTCGGTGTGACAGAAAAGGCCATTCAAGTAAATATAGACAATACTA----------------
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-------------------------------------------------------------------------GAATAAT
ATGAGAACTGGATTATAAACACCATATTACATTT------------------------TTCCTTTTT-------------
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-----------------------CTTGAGATTTAACACCCACGTTTGCATTGCATTGCATCTAGTGCTCGAGATGCTGTC
GCACCATGTTTGATTGCATGCATCATATTGTTTGTGGTCATCTTTTCTCAAGAGTGGTGAG--CTTACCAACAAATAACA
GCACAACACTAA-TATCAAATAGCAAAGGCGATACTCGCCATCTAGTCTATGCTAACCGTTTGCATAAAAAACACATGCT
TGAAAAAAACAGTGGATCGTCTCTATGGATCTGTTGGGGACACTGTGAAAGTGTGAATCACTTACAAGAGGAAGGAACAT
TGCAAACTTATTTTACACATTTGTGTGTCAGGCAAAACCCTACAAGGCAGGGGAAATGTGGCTCCTCTCACCCAAAGCAT
GCTAAACAGCCTCAACATCATCATAGCTGTAGACATTGCTCAGGTTGACGTACCGAACCTCGGCACCTCGCCAAATAGAG
CAAAACCACACATCAAGTTGTAGTGGGTGTCCAACCTCTGATTCAAGTCAG------------------------
>chr1B_1
TGGCATGAACCTAACAACAAATGAGGTATTCTAACACAAAAGCACCAACC--------ATTGGGAGCGTTAACTCACCTA
TCGTCTGGCACGGCCATAGCAGCGCCGGACGCTTCCACGTCCTGCTTCTCCGCCTCATCGTCGGACTTCTTGTTCGCCGC
CGCCTCCGCCTCCATCATCCTCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTCCCTCCGCCGCTCCACCT
CCGCCTTCTGCGCCAGGGCCGCCTCGTCCACCACCACCAGCTCATCCAGGTCGTCAGCACCGTCCGCTTCCGGGTCCAGC
TCTCCCGGCTCTCCGTCGGACTTCTTCTTCGCGGCCGCGGCCGCCTCCGCCAACTTCCTCGCCCGCATCTTCTCCTTCTT
CTTCTTCCTCTTCTCCTTCTCCTCCTTCCTCCTCTCCTTCCTCCGTCGCTCCAGCTCCGCCTTCGACACAGGGTCCGCCT
CGCCCCCCACGGCCGGCTCCTCCAGGG---CCGCAACGTCCACCGCCGGCTGCGGCTCCTCCAGGCCCTCCTCCGACTTC
TTCTCCCGGTCCTCCGCGTCCACCGCCGGAGCGGGTGATTTCTCCGGAGACGCCTTCTTGTTCTTGGCACTATTGGTCCG
GGGAGGGCGAGGCCCCGGGCGCTTGGGCCGGGGCCGCTTGGAGGCCACCAGCCGCACCTTTATCTTCCTCGCCTCTGCGG
CAGCCTCCCCCTCGGCGCCCCCGCCGGGGAGAAGGGTGTGGAGCTTCTGCTTCAGCTTCTTGCGGGCGAGCACCATGGCG
GCGGCGGCGGCGGCGGCGAGGTTTTTCGTTGAGAAAGAAAGAGTGGGGAGAGGAAGAGAGGGCGAGA-----CGAGACGG
CAAGGTTTATACTGGGCCGGGCTGATACGGGCCTTCC----ATCGAACGCGCGGTTCGGCCCATCAGGGGACGGCCCGGC
CCGACGGGAGATTGATCTCTTCTCTTCTCTTACCCTAGCAGCTTAGGGAAGCCGCCGCCGCCGACGTGGAGCAGAGCAGA
GCAGCAGAGCGATCAGGAGGATGACGGGGGGGAAGATGGCGGCGGCGACGGCGGCGAGGTGGGCGGAGGGGTACCCGTGG
AAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTCGGGGCGTGGAAGCCGCT
GGGGATCAGCGGGCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCC
GCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTAATGAGAAGCCCCGCCCCCC
ATTTCCCTCC------CCGCC--------ATCTGCT-----CTGCTCTCCTCGATCGATGCCTGACTGA-----------
----TTTGGTTTGTTTCCGCAGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAG
GTTCGCCTC----------ATCCTTCCTCTTGTGCTTCCTGCTGTTCCCATTTGCCATCCAGTGC-CCCACACATTGCAG
TGTTCTTCTAATCGTCGAA-------------------------------------------------------------
------------ATCAGTAGCTTGGGTGTGC--------------------TGTTTATGGCTCGGAGTAGGTCTGTATAT
CGAAA------A--------------------------------------------------------------------
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----------------TTATCGGCGTTTTTGTTATCAATGCTTAATCACCTCTAAGCAGAGCCATATCTGGAGTCATGTG
CACTGCAGCGGACCTTCCTTGCATAGATGAGTGACAAGAGGT--------------------------------------
--------------------------------------------------------------------------------
------------------------------TAGGCA--------------------------------------------
---------------------------------------------------CAAGGGATTTCAAACCAACCAGTGCAATG
ATATAGTATCTAGGAACCTACTCATGGACAATCTAAGCCCCGATTGCATCCTATCT------------------CGGCAT
TAGATACGGAGGCTGCAGTATAAGGCCTCTTGGGTGCAAGCCTTCGGTCGCTGGCATACCATTCAAAACAGACTAATTCA
TCATTACGGACATCTCTA------TAAAGAGGTTGCTTCCTGGTCTTGTGACTTCACAAGAGTTTGCGCTGTAGGTTTTG
TGCAACGATATGGAAAGCCCAATAA--GCTTGCTTGTAAGATGAGCGCAACCTATTCTGGTTAGGCTGCTAGGATGGTGA
TGGAGCGCTGGAAATAAATATC----TGTGCTGATAATTAAATTCCTGGATAGTTGCTACTTCTAGTTCGTTTCTTCATC
AAACATGGATATGATAAATTAGTAATGGCTCGGTTTGTGAAAATATGTGTTTTTTTTCTCAAAAGCTATGCTGCCAGTTT
AC-TTGAGTTCTTACTCAAGCGTTGCTTAGTCAAGA--------------------------------------------
---------------------------GTATGCTTCAAGGCTAAATGG----------------TTGTGATCACTGTGGT
GATGATTAATCCTGA--------------------------------------------------TTTGTCTGTGTTTC-
-----------TTTCTTCAGAAACGTAGATGGGATAAGAAGATGAAAGAGGAGGAGGCCGCGGCAGCAAAGGCTACTTAA
TTAGGGGACTGTCCTGCTGGTGACTCTGCCGTTTGTTGTGGCAATCGGGAAGGAACTCATAATATAAGCATATTCTGCGC
ACAATGAAACTAG--TCCCTT-TTTTGTTTAATGAGTCCAAGATGTTGATTAACTATGCTGCTCTTCCTGAATAAGGTCG
AAGGGTGTGTAATGTAGCAGGTTCATAGGGTGATTGG--TTTGCGGTCTTTTTCACATTTACTGGTTTTTCCAGCTCTGC
TGCCGCCTGCCACACTTTGTAATGCAATTTTTTT-TGTCACATCGGTCATATAATCAGGATTCTAGCCTGG-CCCAACCT
GCATTGAACCCAACTTGTTTGCTGAAACAAATCAAAATTATGAGTGTG--TGTTTGTTAGTTATTCTCATAGTATATCAT
TGGCACTGCAGGGTTTCTTTCTGTGTGTTTAGTTGTGGCAGAAAAAGGTC-------------A----------------
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-------------------------------------------------------------------------GAATAAT
AGGAGAACTGGACTATAAGCAACAT------TTT------------------------TTTTCTTTTTCTTTTGATATCT
GGG-----------------------------------------------------------------------------
AGGAAATGTGCCAGTATATCTAGACACCATAGAATAGAGTGATGTATAGGGCATATTT----------------------
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------AAAACTATTATTGCACACAAGAATATGACTTCTTGGTTAAGGTAATTTGGTCATTGGACGATATCAATCACATT
ATCTCAAAGTATCTCCGAAAGGTTTTTTATGTTGCAGCTGCTAATAATAGACATAGCATGGGTATGTGTCATATACACAC
ACATTTGAGTTGTGTGGCAGGAATCCAGTCGTCCACACATCAAGTTGCGAGCC---------------------------
-AGGCCCCTCTTGGCTAGGCT---------------ACCCGCGTTTGCATTGCATGGCATCTAGTGCTCGAGATGCTATC
GCACCATGTTTGATTGCATGCATCATATTGTCTGTGGTCATCTTTTCTCAAGAGTGGTGAGAGCTTAACAACAAATAACA
GCACAACACTATAGATCAAATAG--AAGGCGTTACTCGCCATCTTGTCCAAGCTAACCGT--GCATAAAAA---------
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---------------------------------------------------------------------------
>chr1A_1
TGGCATGAACCTAACAGCAAAAGAGGTACTCGAGCACAAATGCACCAATTTG--------TCGAAGCGCCAACTCACCTA
TCATCTGACACAGCTGCATCAGCGCCGGCCACCTCCACGTCCTGCTTCTCCGCCTCATCATCAGACTTCTTGTTAGCCGC
GGCCTCCGCCTCCATCAGCCTCCTGACCCTCCTCTTCTCCTTCTTCTCCTTCCTCCTCTCCTCCCTCCGCCGCATCACCT
CCGCCCTCTGCGCCAGGGCGGCCTCGTCCACCACCGCCGGCTCCTCAAGGTCGTCACCACCATCCACTTCCGGGCCCTGC
TTCCCCGGCTCTCCGTCAGACTTCTTGCTCGCCGCCGCCTCGGCCTCCGCCAACTTCCTGGCCCGCATCTTCTCCTTCTT
CTTCTTCCTCTTCTCCTTCTCCTCCTTCCTCCTCTCCTTCCTCCGCCGCTCCAGCTCCGCCTTCGACGCAGGGTCCGCCT
CG---TCCACGGCCGGCTCCTCCAGGC------------------------------------------CCTCCGCCTTC
TCCTCCGGGCCCTCCGCCTCCACCGCCGGAGCGGGTGATTTCTCCGGAGACGCCTTCTTGTTCTTGGCGCTCTTGGTCCG
GGGAGGGCGGGGCCCCGGGCGCTTGGGCCGGGGCCGCTTGGAGGCCACCAGCCGCACCTTTATCTTCTTCTCCTCCGCGG
CAGCCTCCCCCTCGGCGCCCCCGCCGGGGAGGAGCGCGTGGAGCTTCTGCTTCAGCTTCTTGCGCGCGAGCACCATGGCG
GCGGCGGCGGCGGAGTGGAGAGAAAGACAG---------AGAGAGGGGAGAGGAAGAGACTT---GA-----CGAGACGG
CGAGGTTTATAGTGGGCCGGGCTGATGTGGGCCTTACATTGATCGAACGTGCGGTTCGGCCCATCAAGGGACGACCCGGC
CCGGCC------CGATCTCTGCTCTTCTCTTACCCTAG------------GCCGCCGCCGCAACCCTAGCGAGCGAGCGA
GCGAGAGAGCGCGATGGCC-------GGGGGCAAGATGGCGGCGGCGACGGCGGCGAAGTGGGCGGAGGGGTACCCGTGG
AAGGAGAAGCTGGCCAAGTACAAGGGGGAGCTGAGCAAGGGGGTGTGGGGGTACTGGGAGCTCGGGGCGTGGAAGCCGCT
GGGGATCAGCGGCCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGACCTACGACCCGCCCC
GCGGCGAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTAATGAGCC------TCCCCC
ATTTCCCTCC------ACCCCTCCCAATCTGC---------GCCATTTCTCTTCTCGATGCCTGGTTAACTTGGTTTGGT
TTGGTTTGGTTTGTTTCCGCAGGCGTGCCAACACCGTTGAGCTGATGAAGAAGATGCCCCAGATGCTCCTCGACTACAAG
GTTCGCCTGCTCGCCTCGC------CCTTCTGTGCTTCATGTTGTCTCAGTTTGCCATCCGGTGTGCCTGCGCATTGCAA
TTGTGTAGCAATCCTTGCCGTGT-----ATAATCAATGCCGTGCTGAGCAATCCTTGTATAGTTGTATGTAACCATGTGT
TTCCTGGCTGGTATCAGTAGCTTGAGTGTGC--------------------TGTTTCAATCATCAGGGTTTATTTGCTCG
ACGCAAGTCACA--------------------------------------------------------------------
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----------------TTATCAGTGTTTTAGTTATCACTGCTTAATCTGTTGTAAGCATAGCCATAACTGGAGTCATGCG
CACTGCAG---A----CTTTGCTTAGATATAAGCCACGAGACATTAAGGCCCTGTTCGGCAACCCTCCGCTCCTTCAGCG
CGGAGCGGAGCGCACGGAGTGGCCCTTGAGCGACTCTGAAAATTTGAACTGGATGCTGCTCCGCTCCAGAGCGGAGTTGG
AGCGGGGAGAGAGTCCGAACAGGCTCTAAGTAAGTA--------------------------------------------
---------------------------------------------------CAAGGGATTTCAAGCCAACTAGTGTTATG
ATC---TTTCTCGGCACTTGCTCGTGGATCTTCCTTGAAAATTTACACTTAAGCCCCATTTCTCCCAAATGCAGCAGCAT
GAGATACTTAGGCTGCAGCTGGGCTTTCA-----------------GTTGCTGGCATACCATTCAAATCAGCTTGATTCA
TCATTGGAGGCTTAGCTAAACTTCTAAAGAGTTTGCTCCCTGGTCTTATGAGTTCACAAGTGTTTGCACTATACATTTTG
TGCAACAATGTGTAAAGCCCAGTAAGCGCTTGCCTGCAAGATGAGA-CAACCTATTCTGGTCA-GCTGCTAGAATGGCTA
TGGAGCACTGGAATTAAATATC----TGTGCTGGTAATTAAATTTCTTGATAATTGCTAGTTATAGTTCATCTTATCATT
GAACATGGATC-----AATTATTAAGGGCTCGATTTGGGAGAAATATATTTTCTTGT---GAAAACTATGCTGCCAGTTT
AG-TTGAGTTCTTACTGAAGACA-GCATACC-------------------------------------------------
-------------------------TTGTA--CTTTAAGGCTACATGTTGTGCACTTGTGATCATTGTGTTCACCATGGC
AATGATTAATGTGATTGCGTACAACTTCTCTGTGCCTTGAAAGGAAGCATCTAACTGGTTCTTCTTTTGTCTGTGTTTGC
ACAAATTGTTATTTCTGCAGAAACGCAGATGGGATAAAAAGATGAAAGAGGAGGAGGCAGCAGCAGCAAAGGCTACTTAG
---GG--ACTGGCCTGCTGGTGATTCTACCGTTTGTTGTGGCAATCGGGAAGGAACTCTTAATATAAACATATTCTGCGC
ACAATGAAACTAGTCTCCCTT-TTTTGTTTGATGAGGCCAAGCTGTTGATTAAGTATGCTGCTCTTCCTGAATAAGGTCG
AAGGGAGTGTAATGTAGGAATTTCATAGGCTTATTGGCTTTTGCAGTCTTTTTCGCCTTGCTGC---TTTCCAACTCTAG
TGCCACCTGCCACACTTTGTAATGCA-TTTTTTT-TATAACATCGGTCATATAATCAGGATTCTAGCCTGGTCCCAACCT
GCATTGAACCCAACTTGTTTGCTGAAACAGATCAAAATTATGAGTGTG--TGTTAGTTATTCTCATG-------TATCAT
TGGCACTGCAGGGTTTTTTTTTGTGTGGCAGAAAGGGTCATTCAAGTAAATATATGCCA---TA----------------
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-------------------------------------------------------------------------GTATAAT
ATGAGAACTGGATTATAGACACCATATAGAATTT------------------------TTCCTTTTTTCTTTTGAGATCT
GGG-----------------------------------------------------------------------------
AGGAAATGTGCCAGTATATCTAGGCACCATAGAATAGAGTGATGTATAGGGCATATTT----------------------
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------AAAACTATTATTGCACACAAGAATGACTCCTCGGTTCTTTATGTTGCTGCACTGGGAGT---------------
-----------------------------TGTTGCAGCTGCTAATAATAGACATAGCCTGGGTATGTGTCATATACACAC
ACATTTGGGTTGTGTGGCAGGAAAATCATCAGGCGTCCACAGTGGTCGCACCCGGTTGCATGCATCAAGTCATGAGCCAG
GAGGCCCCTCTCAGCTAGGCCCGCTTGAGATTTAACACCCACGATTGCGTTGCATTGCATCTAGTGCTCAAGATTCTATT
GCACCATGTTTGATTGCATGCATCATATTGTTTGTGGTCATCTTTTCTCAAGAGTGGTGAG--CTTACCAACAAATAACA
GCACAACACTTC-GATCAAATAGC-AAGGCGTTACTCGCCATCTTGTCCAAGCTAACCGTTTGCATAAAAAACACTTGCT
TGAAAAAATAGA---ATTGTCTCGATGGATCTGTTGGGGATGCTGTGAATCACTTTATGACCTGCAAGAGGAAGGAACAT
TGCAAACTTGCTCTTCCACATCTGTG------------------------------------------------------
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>chr5D_1085
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------------------------GGGGAGCTGGGCAAGGGTGTGTGGGGGTATTGGGAGCTGGGCGCGTGGAAGCCGCT
GGGGATCAGCGGCCGGCAGCGCGCGCGGCTCCGCAAGGAGGTGCTCCTCGCCGGCGAGGACTGGGCCTACGACCCGCCCC
GCGGCAAGATGCGCACCAAGCGCAAGGGCCACAAGGTCGACCGCATCGCCGCCGAGAAGTGAGAAG----ACCATCCCCC
ATCTCCCTCC------ACCCCTCCTCGCAATCTGTGGCGTCCTGCTCTCCTAGATCGATGCCTGA------TGATTTGGT
TTGGTTTGGTTTGTTTCTGCAGGCGTGGCAACACCGTTGAGCCGATGAAGAAGATGCCCTAGATGCTCCTCGACTACAAG
GTTCGCCTCCTTTGGCTCA-----TCCTTTTGTGCTTCATGTTGTTTCAGTTTGCCATCCAGTGTGCCTGCACATTGCAA
TTGTGTAGTAATCCTTGTTGTGT-----AT-ATCAATGCCGTGCCGAGTAATCCTTGTATAGTCGTATGTAACCATGTGT
TTCTTGGCTGATATCAGTAGCTTGGGTGTGC--------------------TGTTTTAATCATCAGTCTTTATCTGCTC-
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>chr3B_1721
GGGGA---------------------------------------------------------------------------
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------------------------------------------------------------------------AGAATATT
CTATGAACCTTTCCTTTTTT--CGTTAAGTTCAAGTCTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGA
GACCGACCCACTTCCTATCTAGGATTTTATTTACTAGTCCTTTATATTCCAACGTGTCAATCGCCA-AATGCTTTGGCAA
TTTCCCCGGGTCCGATGAAGCAATATAATTTTGAACCAGACCTTTTGATCTTTGGTTATCTTTCATAGTAATAATATCTC
TGGGTTTGCAACAAAAACTTGGTATATTGACTATACGATCATTAACTAAAATATGTCTATGGTTGACTAATTGGCGGGCC
CCAGGAATGGTTGAAGCCATACCCAATCGAAAAAGGATATTATCCAAACGCATTTCAAGTAATTGAAGTAAAACCTGGCC
TGTTGACCTTTTTTGCTTTTCCAGCGATATGTACATATCTAAGTAATTGTCGTTCTGTCAGACCATAATGAAAACACAAT
TTCTGTTTTTCTTGAAGACGAATACGATATTGCTCCTTTTTCCTAGAATTGAATTTTTTTTAAGATTACTTCCGGATTTA
GGTGTTTTTCTAGTGAGTCCTGGTAAAGCTCCCAGACGGCGTATTTTTTTAAACGAGGTCCTCGATAACGGGACATGAAG
ACTCCTTTTTTATTTTATTGAAATTTCATTTTACACAATTAATTTCATTGTATTTACATTACAGAATACATCGAAATTAA
AACTGAATTAAACTACAGGATAAACAGAGTAAAATCAACTAAAGTACCCCAAAAAATGGAATTTCATCAAAATCTTTATT
TTTTTATATATATTATTTATTTTGTTGTTTTGTATCTAGCAAAATTGTAAGGTAAAAAACATAAAAGATCCTGGATTCTC
CATTTAATTCGGAAAAAAAGAGATTCTTGTTCGTAGAACATCGATAGAGAAAAAAAAGCCGACTATCGGATTTGAACCGA
TGACCCTCGCATTACAAATGCGATGCTCTAACCTCTGAGCTAAGTGGGCTTACATAACGGAAATAGTGTAACAAATAGAA
ATAGGTATAGTATAGGAAATCCGTAAAATCTCAGATATTAGTTATTAATCTTAGCTATTAACTAGTTCTAAATTTGAAGT
TATACTTATAAAAATAAAAAAATACTAAAACTTCTTAAAGATAAAGTTAGCTTGATATGCTTAACTATAGGATATTAAAA
AATAAAATTATAGAATTTATTGGTATTTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTACATGAGGTTTTCATCTCATACGGCTCCTCCCTTCTGTACATAATAGTACTAAGCGAAATAATCTATAGAATCA
AAATAGAATTAGTCCCGTCTCATTATGAACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCAAGCCAACCTTCCCACAA
GAGGTTTTTCTTAACACCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAATAATTTCTTTGTTCTCAACGCC
TCCTATTTAGAGGAATTAGCTACTTCAACGATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACCTGATGGTTGTTTG
TTATCCCAACCATTCTTCCCAGCCCTGATACCGATCAGGAAAGGGGTAATTTCTAACAAAGTTTT---------------
--------------------------------------------------------------------------------
------------------------------------------TCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTC
TCCCCTATGTTGCCTACGGATACTAATAGAGTAGGATTGGCCTGTAATCCATACCATACCATATCCTGTAGGTGTAACCT
TTCGCTCAATACTCAAATCTACAATTGAAGTATCTGAAGCCGCATCAATCGAGGATACACGACGGAAGGAATTGTTAGTT
CGCCTCACCTTCCCAAAGCGTGGGTTTGTTTGCTTTACAAATTTGGTTCTCTCTATGCCAACCCCTTCTCTTTTTCGTAA
GATTGAGGTATAGGTA----------------------------------------------------------------
------------------------------GGGCTAAAAAAAAGCAAAAAAAAGAGTCAAATCGCACCATCTCTATAATA
AGTA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATGCC-TTTTTTTCTCCTGAGGTTATCGGAATTATTTGCAATAAAATATTGGCTACAAT
TGAGGAGGTCTTATCAATGAAATTTCCATTTACACGGGATCTAGGCATAATTCCCAACCCATTCTATATAGAGTTGTTTT
CATTCCTTCACAAAATAACATAAAAACAAACACATTCGATTCTTATAATTATAAATAAATTGATCCATATGCTCTACTCT
AAATCCATATGCTTTAAATGGATAAGAGAGATATGGATTTTCCGCTCAGCTCAAATTGTATCCTTTTCCTTCTGCTTGGA
CACGAAGAGATATGAAATATTTGACTAAGACTGGATTTCATTCCACTTTCCTATTTCTGAACAACAACTTATGTTATCAA
CTATTTCGTGTTTTCAAAGTTATTTTATTAATTGTCTCATACCCTATTTTTGATTTCGATAGTATGGTGTAGCGTATCTT
ATGCAAACGGAATTCTAAGGTTTTTTTATTTTATTATGCAATAAGAAGAATTCTTCCATTTTCTTTTTCTTTAGTTGCGG
GAAAACCCAAATTAAAACTTTTATTTTATAGCGAGCGCAATTTCTAGTAAAAAATCCTGTATCCTTCCACTTAGATCAAA
AGGAATTTTTCCAATAGAACTATGGAACCCCCGAGTGGTTGCGGTTGTACCTGTACTGCAGGAATAAGAAAACTCGCTAT
TCACTCAGTTTATTTTCCATAATAAGTTATGTAGGAGAGATGGCCGAGCGGTTCAAGGCGTAGCATTGGAACTGCTATGT
AGACTTTTGTTTACCGAGGGTTCGAATCCCTCTCTTTCCGTTTTTATTAATTCATCAACGTTAAGGATCACAATGTATCA
AATCAAATAACAATTTTTTCCAGCAATAATATAATATCTTATATTATCTTATTTTGATTTAATAGAAATTAGAAATTCTC
TATAGCAAATTACTGTGGTATG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TAAAATACACATAGA
GGAAAAAAGAAA---AAAGGATCCTAATCCTAGGGTTAATCAATTTTAGCTAGTTGATGGGAAAATACGAATTAATGGTA
ATGGTCTTAGGGCGATTTAGTTCAGGGAAAGGGGAAGGGGAAGAAAATTCTATGAACCTTTCCTTTTTTCGTTAAGTTCA
AGTCTGACGAGAGTAATATTCTACAACTAACAACTCATTTATTTTGAGACCGACCCACTTCCTATCTAGGATTTTATTTA
CTAGTCCTTTATATTCCAACGTGTCAATCGCCAAATGCTTTGGCAATTTCCCCGGGTCCGATGAAGCAATATAAT
>SNPs
------------------------------------------------S--SSSSSSS---------------------S
----------------S-----------------------------S---------S-----------------------
------------------S-------------------------------------------------------------
--------------------------------S-------------------S-----------S-----SS--------
------------S-S--------------------S--------------------------------------------
------------------------------------------------------------------------S---S---
-------------S-------------SSS--------------------------------------------------
---------------S----------------------S-----------------------------------------
------------------S-------------------------------------------------------------
-S------------------------------------------------------------------------------
---------SS-SSS-S--------------------------------------------------SSSSS--------
-----------S---------------------S--------SSS---S-----S-------------------------
------------------------SS----SSS-S--S-SS--------------------------------------S
SS---SS-SSS---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------SS-----
SS--------SSSSSS--S---------S---------------S------------------------S----------
-S------------------------------------------------------------------------------
-----------------S----------S----SS---------------------------------------------
---S---------SS-S--SS--SSSSS--------------------------------SS------------------
S---SS------SS-----------------SSSSSSSSSSSSSSSSSSSS-------S----S-SS--SS---------
S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
S----S-S------------SS----S--------S--------S------------------S--SS-----------S
----SS-------S--SS------------------------------S---S-SSSSSSSSSSSSS-------------
---S--------S-------S-----------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------S
-----S---SSSS--S----------S--S-S--SSSSSS-------------------------S--------------
-----------------S-------------SS----S-S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S--S---------------------S---
---------------S--------------------------S----S--------------------------------
------------------------S---------------------------------------S---------------
S--------------------S-S--------------------------------------S----------S------
----------------------------------------------S----S------------------------S---
------------------S---SSSS-----------------------SS--S------------SS------------
-----------------------------SS------S----S--------------S-------S--------------
--S-------------S--SS-----------------------------------------------------------
------------------------------------------------------------------S----------S--
--------------S--SS--S-----SS-S------------S--S-----S----S----S---S-S-----------
S-S--S----S-----------------S--------------------S------------------------------
--------------------------S-----------------S---------------S-------S-------S-SS
-----------------S-SSS----------SS--------------------S-------------------------
---------------------------------------S----------------------------------------
-------------------S------------------------------------------------------------
------------------------------------------------SS------------------------------
---------------------S------------S--S----------------SS----SS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------SSS--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
-----------S-S----------S------S------------S---S-S-----------------------------
--------SS-SSSS--S-----S-------------------------SSS--SS--S--S------------------
---------SS-S---SS-S--SS-S-SS---SS--SSSSS-S--SSSSSSSSS--SS-SS-SSS-S-SSSSS--SSSSS
SS-SSSSS-SSSSS-SSSSSSS-S-S--SSSS--SSSSS-SSSS-SSSSSSSS-SS--S--SSSS-SSS-SSSSSSSSSS
-S-SS--SSSSSSSSSSSSSSS--SSS-SS----SSS--SSSS---S-SSS------------------------
>forward_80
------------------------------------------------------------TCGGAGCGTTAACTCACCTG
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>reverse_1681
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GTCCCAGCTGATGCCAGTAG------------------------------------------------------------
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>forward_1355
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-------------------------------------------------------CCGAGAAGTGAGAAGCCCTG-----
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>reverse_4267
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--------------------------AGCCGTTTGTTGTGGCAAAC----------------------------------
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---------------------------------------------------------------------------
