Multiple sequence alignment - TraesCS1D01G022200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G022200 chr1D 100.000 2412 0 0 1 2412 9425094 9427505 0.000000e+00 4455
1 TraesCS1D01G022200 chr1D 82.227 512 58 17 939 1436 9420674 9420182 6.210000e-111 411
2 TraesCS1D01G022200 chr1D 85.714 343 41 6 1809 2149 9402120 9402456 2.950000e-94 355
3 TraesCS1D01G022200 chr1D 83.003 353 41 11 609 945 9435221 9434872 3.900000e-78 302
4 TraesCS1D01G022200 chr1D 88.304 171 19 1 435 604 9436449 9436279 1.130000e-48 204
5 TraesCS1D01G022200 chr1D 89.655 58 6 0 939 996 9434850 9434793 9.250000e-10 75
6 TraesCS1D01G022200 chr1B 83.762 1478 171 40 1 1443 13566137 13564694 0.000000e+00 1336
7 TraesCS1D01G022200 chr1B 81.172 717 88 20 1713 2408 13497439 13498129 1.270000e-147 532
8 TraesCS1D01G022200 chr1B 81.180 712 89 20 1713 2404 13009865 13010551 4.570000e-147 531
9 TraesCS1D01G022200 chr1B 77.472 799 125 37 505 1282 13009349 13010113 6.160000e-116 427
10 TraesCS1D01G022200 chr1B 87.158 366 36 7 1089 1443 13560069 13559704 2.890000e-109 405
11 TraesCS1D01G022200 chr1B 86.842 342 43 2 939 1280 12357813 12358152 4.870000e-102 381
12 TraesCS1D01G022200 chr1B 80.658 517 73 9 430 945 12357300 12357790 2.260000e-100 375
13 TraesCS1D01G022200 chr1B 85.260 346 42 5 939 1283 12764388 12764051 4.940000e-92 348
14 TraesCS1D01G022200 chr1B 85.260 346 42 5 939 1283 13504628 13504291 4.940000e-92 348
15 TraesCS1D01G022200 chr1B 84.659 352 49 5 1713 2063 12491942 12492289 1.780000e-91 346
16 TraesCS1D01G022200 chr1B 84.375 352 50 5 1713 2063 12562005 12562352 8.260000e-90 340
17 TraesCS1D01G022200 chr1B 77.509 578 78 35 830 1390 13497262 13497804 1.400000e-77 300
18 TraesCS1D01G022200 chr1B 80.319 376 45 12 2055 2408 12492478 12492846 8.560000e-65 257
19 TraesCS1D01G022200 chr1B 80.053 376 46 12 2055 2408 12562541 12562909 3.980000e-63 252
20 TraesCS1D01G022200 chr1B 81.992 261 44 3 248 507 13017688 13017430 4.040000e-53 219
21 TraesCS1D01G022200 chr1B 81.853 259 43 4 251 507 12764879 12764623 5.220000e-52 215
22 TraesCS1D01G022200 chr1B 82.158 241 34 8 8 245 13018250 13018016 5.260000e-47 198
23 TraesCS1D01G022200 chr1B 85.714 175 22 2 1477 1648 13559597 13559423 5.300000e-42 182
24 TraesCS1D01G022200 chr1A 83.564 724 83 14 1713 2408 10696671 10697386 0.000000e+00 645
25 TraesCS1D01G022200 chr1A 80.790 557 65 13 750 1280 10716300 10715760 4.830000e-107 398
26 TraesCS1D01G022200 chr1A 77.158 753 110 40 542 1280 10696213 10696917 4.870000e-102 381
27 TraesCS1D01G022200 chr1A 79.935 309 49 11 1662 1960 10716063 10715758 5.220000e-52 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G022200 chr1D 9425094 9427505 2411 False 4455.0 4455 100.0000 1 2412 1 chr1D.!!$F2 2411
1 TraesCS1D01G022200 chr1B 13564694 13566137 1443 True 1336.0 1336 83.7620 1 1443 1 chr1B.!!$R2 1442
2 TraesCS1D01G022200 chr1B 13009349 13010551 1202 False 479.0 531 79.3260 505 2404 2 chr1B.!!$F4 1899
3 TraesCS1D01G022200 chr1B 13497262 13498129 867 False 416.0 532 79.3405 830 2408 2 chr1B.!!$F5 1578
4 TraesCS1D01G022200 chr1B 12357300 12358152 852 False 378.0 381 83.7500 430 1280 2 chr1B.!!$F1 850
5 TraesCS1D01G022200 chr1B 12491942 12492846 904 False 301.5 346 82.4890 1713 2408 2 chr1B.!!$F2 695
6 TraesCS1D01G022200 chr1B 12562005 12562909 904 False 296.0 340 82.2140 1713 2408 2 chr1B.!!$F3 695
7 TraesCS1D01G022200 chr1B 13559423 13560069 646 True 293.5 405 86.4360 1089 1648 2 chr1B.!!$R5 559
8 TraesCS1D01G022200 chr1B 12764051 12764879 828 True 281.5 348 83.5565 251 1283 2 chr1B.!!$R3 1032
9 TraesCS1D01G022200 chr1B 13017430 13018250 820 True 208.5 219 82.0750 8 507 2 chr1B.!!$R4 499
10 TraesCS1D01G022200 chr1A 10696213 10697386 1173 False 513.0 645 80.3610 542 2408 2 chr1A.!!$F1 1866
11 TraesCS1D01G022200 chr1A 10715758 10716300 542 True 306.5 398 80.3625 750 1960 2 chr1A.!!$R1 1210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.583438 CGCGCTTAATGTCTCCATGG 59.417 55.0 4.97 4.97 0.00 3.66 F
1285 1716 0.174845 CCGTCGTTGGCTAGATCCAA 59.825 55.0 0.00 0.00 43.36 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1747 0.031585 GGCCCCGTTTGTTTCAACTC 59.968 55.0 0.00 0.00 0.00 3.01 R
2342 3050 0.250038 AACATCCGGATCAGATGGCG 60.250 55.0 15.88 2.99 44.45 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.583438 CGCGCTTAATGTCTCCATGG 59.417 55.000 4.97 4.97 0.00 3.66
24 25 0.583438 CGCTTAATGTCTCCATGGCG 59.417 55.000 6.96 0.00 38.22 5.69
75 76 3.458163 TACTCGGCTTCGGGCTGG 61.458 66.667 9.52 4.48 46.69 4.85
103 104 4.002982 CTGTAGTGCAAGGTGCTCATTAA 58.997 43.478 1.43 0.00 45.31 1.40
140 144 8.886719 GGTAAACAGTAGGAAATAACATGTACC 58.113 37.037 0.00 0.00 0.00 3.34
142 146 6.290294 ACAGTAGGAAATAACATGTACCGT 57.710 37.500 0.00 0.00 0.00 4.83
146 150 9.321562 CAGTAGGAAATAACATGTACCGTAATT 57.678 33.333 0.00 0.00 0.00 1.40
147 151 9.538508 AGTAGGAAATAACATGTACCGTAATTC 57.461 33.333 0.00 0.00 0.00 2.17
181 185 8.220755 ACATAGTGAACAAGCTGTAAGAAAAA 57.779 30.769 0.00 0.00 34.07 1.94
237 241 6.183360 GCATTATGCTCATGTCCTTACTTTGT 60.183 38.462 10.27 0.00 40.96 2.83
257 586 8.840321 ACTTTGTAATAATAGTTATGCAGCCAG 58.160 33.333 0.00 0.00 0.00 4.85
259 588 6.533730 TGTAATAATAGTTATGCAGCCAGCT 58.466 36.000 0.00 0.00 45.94 4.24
264 593 2.089980 AGTTATGCAGCCAGCTTCTTG 58.910 47.619 0.00 0.00 45.94 3.02
274 603 2.358898 GCCAGCTTCTTGAAGTTTGTGA 59.641 45.455 11.41 0.00 0.00 3.58
277 606 4.260948 CCAGCTTCTTGAAGTTTGTGAGTC 60.261 45.833 11.41 0.00 0.00 3.36
385 716 8.511604 AATGTTTCTAGTGATCATTTACCCTG 57.488 34.615 0.00 0.00 0.00 4.45
450 786 1.379843 GGGTATTGTGCACCAGGGG 60.380 63.158 15.69 0.00 37.84 4.79
489 825 7.394641 AGAATAGGAAGGAAAAATGAGTTGGTC 59.605 37.037 0.00 0.00 0.00 4.02
605 942 3.648009 TGTAGGGTGTACGGTTTAAACG 58.352 45.455 12.07 0.00 37.36 3.60
657 995 4.072131 TGTAACTCATGAGGCAAGTTTCC 58.928 43.478 26.08 2.71 35.08 3.13
662 1000 4.263905 ACTCATGAGGCAAGTTTCCCAATA 60.264 41.667 26.08 0.00 0.00 1.90
666 1004 4.843728 TGAGGCAAGTTTCCCAATACTAG 58.156 43.478 0.00 0.00 0.00 2.57
680 1033 7.054124 TCCCAATACTAGCATTAGGAAAACAG 58.946 38.462 0.73 0.00 0.00 3.16
686 1039 6.485171 ACTAGCATTAGGAAAACAGTCCAAT 58.515 36.000 0.00 0.00 40.48 3.16
687 1040 5.904362 AGCATTAGGAAAACAGTCCAATC 57.096 39.130 0.00 0.00 40.48 2.67
699 1052 3.580458 ACAGTCCAATCTTGCTCAGTAGT 59.420 43.478 0.00 0.00 0.00 2.73
726 1079 1.216678 TGCCAACTTCCCCTCAAAGAA 59.783 47.619 0.00 0.00 0.00 2.52
748 1101 0.825010 AATCCGAATGCCCATCAGCC 60.825 55.000 0.00 0.00 0.00 4.85
774 1128 4.725790 AATGTGCCTTAGCCATCTTTTC 57.274 40.909 0.00 0.00 38.69 2.29
911 1265 5.016051 AGTGATAACATCGAAGCATCACT 57.984 39.130 22.71 22.71 46.78 3.41
919 1273 2.176045 TCGAAGCATCACTTGGTCCTA 58.824 47.619 0.00 0.00 39.29 2.94
946 1330 4.201970 GCCGGCTTTGTATACATGCTAAAA 60.202 41.667 22.15 7.87 0.00 1.52
948 1332 6.142817 CCGGCTTTGTATACATGCTAAAATC 58.857 40.000 22.28 10.15 0.00 2.17
1013 1444 3.326578 AGCCATACCCCACGCACA 61.327 61.111 0.00 0.00 0.00 4.57
1017 1448 0.679640 CCATACCCCACGCACACAAT 60.680 55.000 0.00 0.00 0.00 2.71
1025 1456 1.359848 CACGCACACAATAGACCTCC 58.640 55.000 0.00 0.00 0.00 4.30
1285 1716 0.174845 CCGTCGTTGGCTAGATCCAA 59.825 55.000 0.00 0.00 43.36 3.53
1291 1722 0.178068 TTGGCTAGATCCAACGGAGC 59.822 55.000 0.00 0.00 40.92 4.70
1292 1723 1.300233 GGCTAGATCCAACGGAGCG 60.300 63.158 0.00 0.00 43.66 5.03
1293 1724 1.437986 GCTAGATCCAACGGAGCGT 59.562 57.895 0.00 0.00 43.66 5.07
1304 1735 1.711206 ACGGAGCGTTTCTCTTAAGC 58.289 50.000 0.00 0.00 41.60 3.09
1305 1736 1.000506 ACGGAGCGTTTCTCTTAAGCA 59.999 47.619 0.00 0.00 41.60 3.91
1306 1737 2.066262 CGGAGCGTTTCTCTTAAGCAA 58.934 47.619 0.00 0.00 41.60 3.91
1307 1738 2.673368 CGGAGCGTTTCTCTTAAGCAAT 59.327 45.455 0.00 0.00 41.60 3.56
1308 1739 3.863424 CGGAGCGTTTCTCTTAAGCAATA 59.137 43.478 0.00 0.00 41.60 1.90
1309 1740 4.259850 CGGAGCGTTTCTCTTAAGCAATAC 60.260 45.833 0.00 0.00 41.60 1.89
1310 1741 4.630069 GGAGCGTTTCTCTTAAGCAATACA 59.370 41.667 0.00 0.00 41.60 2.29
1311 1742 5.294552 GGAGCGTTTCTCTTAAGCAATACAT 59.705 40.000 0.00 0.00 41.60 2.29
1312 1743 6.479001 GGAGCGTTTCTCTTAAGCAATACATA 59.521 38.462 0.00 0.00 41.60 2.29
1313 1744 7.306866 GGAGCGTTTCTCTTAAGCAATACATAG 60.307 40.741 0.00 0.00 41.60 2.23
1314 1745 6.018669 AGCGTTTCTCTTAAGCAATACATAGC 60.019 38.462 0.00 0.00 0.00 2.97
1315 1746 6.238103 GCGTTTCTCTTAAGCAATACATAGCA 60.238 38.462 0.00 0.00 0.00 3.49
1316 1747 7.340699 CGTTTCTCTTAAGCAATACATAGCAG 58.659 38.462 0.00 0.00 0.00 4.24
1317 1748 7.222805 CGTTTCTCTTAAGCAATACATAGCAGA 59.777 37.037 0.00 0.00 0.00 4.26
1318 1749 8.547069 GTTTCTCTTAAGCAATACATAGCAGAG 58.453 37.037 0.00 0.00 32.68 3.35
1319 1750 7.353414 TCTCTTAAGCAATACATAGCAGAGT 57.647 36.000 0.00 0.00 33.01 3.24
1320 1751 7.786030 TCTCTTAAGCAATACATAGCAGAGTT 58.214 34.615 0.00 0.00 33.01 3.01
1321 1752 7.708322 TCTCTTAAGCAATACATAGCAGAGTTG 59.292 37.037 0.00 0.00 33.01 3.16
1322 1753 7.555965 TCTTAAGCAATACATAGCAGAGTTGA 58.444 34.615 0.00 0.00 0.00 3.18
1323 1754 8.040727 TCTTAAGCAATACATAGCAGAGTTGAA 58.959 33.333 0.00 0.00 0.00 2.69
1324 1755 8.560355 TTAAGCAATACATAGCAGAGTTGAAA 57.440 30.769 0.00 0.00 0.00 2.69
1325 1756 6.428385 AGCAATACATAGCAGAGTTGAAAC 57.572 37.500 0.00 0.00 0.00 2.78
1326 1757 5.939883 AGCAATACATAGCAGAGTTGAAACA 59.060 36.000 0.00 0.00 0.00 2.83
1327 1758 6.430925 AGCAATACATAGCAGAGTTGAAACAA 59.569 34.615 0.00 0.00 0.00 2.83
1328 1759 7.040478 AGCAATACATAGCAGAGTTGAAACAAA 60.040 33.333 0.00 0.00 0.00 2.83
1329 1760 7.061094 GCAATACATAGCAGAGTTGAAACAAAC 59.939 37.037 0.00 0.00 0.00 2.93
1330 1761 5.095691 ACATAGCAGAGTTGAAACAAACG 57.904 39.130 0.00 0.00 35.13 3.60
1331 1762 4.024048 ACATAGCAGAGTTGAAACAAACGG 60.024 41.667 0.00 0.00 35.13 4.44
1332 1763 1.676006 AGCAGAGTTGAAACAAACGGG 59.324 47.619 0.00 0.00 35.13 5.28
1333 1764 1.269051 GCAGAGTTGAAACAAACGGGG 60.269 52.381 0.00 0.00 35.13 5.73
1334 1765 1.029681 AGAGTTGAAACAAACGGGGC 58.970 50.000 0.00 0.00 35.13 5.80
1335 1766 0.031585 GAGTTGAAACAAACGGGGCC 59.968 55.000 0.00 0.00 35.13 5.80
1336 1767 1.299544 GTTGAAACAAACGGGGCCG 60.300 57.895 0.00 0.00 46.03 6.13
1337 1768 2.491022 TTGAAACAAACGGGGCCGG 61.491 57.895 9.88 9.88 44.69 6.13
1338 1769 2.908428 GAAACAAACGGGGCCGGT 60.908 61.111 11.45 11.45 44.69 5.28
1372 1803 4.327982 CCGGCAGGGATCATATATGTAG 57.672 50.000 12.42 0.00 38.47 2.74
1373 1804 3.493350 CCGGCAGGGATCATATATGTAGC 60.493 52.174 12.42 8.39 38.47 3.58
1374 1805 3.386078 CGGCAGGGATCATATATGTAGCT 59.614 47.826 12.42 0.00 0.00 3.32
1375 1806 4.500545 CGGCAGGGATCATATATGTAGCTC 60.501 50.000 12.42 2.90 0.00 4.09
1376 1807 4.406972 GGCAGGGATCATATATGTAGCTCA 59.593 45.833 12.42 0.00 0.00 4.26
1377 1808 5.071519 GGCAGGGATCATATATGTAGCTCAT 59.928 44.000 12.42 0.00 40.25 2.90
1378 1809 6.222389 GCAGGGATCATATATGTAGCTCATC 58.778 44.000 12.42 6.89 37.91 2.92
1379 1810 6.445475 CAGGGATCATATATGTAGCTCATCG 58.555 44.000 12.42 0.00 37.91 3.84
1380 1811 6.040278 CAGGGATCATATATGTAGCTCATCGT 59.960 42.308 12.42 0.00 37.91 3.73
1381 1812 6.040278 AGGGATCATATATGTAGCTCATCGTG 59.960 42.308 12.42 0.00 37.91 4.35
1382 1813 6.183360 GGGATCATATATGTAGCTCATCGTGT 60.183 42.308 12.42 0.00 37.91 4.49
1383 1814 6.915300 GGATCATATATGTAGCTCATCGTGTC 59.085 42.308 12.42 0.00 37.91 3.67
1384 1815 5.869350 TCATATATGTAGCTCATCGTGTCG 58.131 41.667 12.42 0.00 37.91 4.35
1385 1816 5.411669 TCATATATGTAGCTCATCGTGTCGT 59.588 40.000 12.42 0.00 37.91 4.34
1386 1817 2.941453 ATGTAGCTCATCGTGTCGTT 57.059 45.000 0.00 0.00 29.76 3.85
1387 1818 2.257974 TGTAGCTCATCGTGTCGTTC 57.742 50.000 0.00 0.00 0.00 3.95
1388 1819 1.810755 TGTAGCTCATCGTGTCGTTCT 59.189 47.619 0.00 0.00 0.00 3.01
1389 1820 2.228103 TGTAGCTCATCGTGTCGTTCTT 59.772 45.455 0.00 0.00 0.00 2.52
1390 1821 3.437741 TGTAGCTCATCGTGTCGTTCTTA 59.562 43.478 0.00 0.00 0.00 2.10
1391 1822 2.864968 AGCTCATCGTGTCGTTCTTAC 58.135 47.619 0.00 0.00 0.00 2.34
1392 1823 2.228103 AGCTCATCGTGTCGTTCTTACA 59.772 45.455 0.00 0.00 0.00 2.41
1393 1824 3.119459 AGCTCATCGTGTCGTTCTTACAT 60.119 43.478 0.00 0.00 0.00 2.29
1394 1825 3.612860 GCTCATCGTGTCGTTCTTACATT 59.387 43.478 0.00 0.00 0.00 2.71
1395 1826 4.796830 GCTCATCGTGTCGTTCTTACATTA 59.203 41.667 0.00 0.00 0.00 1.90
1396 1827 5.459107 GCTCATCGTGTCGTTCTTACATTAT 59.541 40.000 0.00 0.00 0.00 1.28
1397 1828 6.560433 GCTCATCGTGTCGTTCTTACATTATG 60.560 42.308 0.00 0.00 0.00 1.90
1398 1829 5.746721 TCATCGTGTCGTTCTTACATTATGG 59.253 40.000 0.00 0.00 0.00 2.74
1399 1830 5.063180 TCGTGTCGTTCTTACATTATGGT 57.937 39.130 0.00 0.00 0.00 3.55
1400 1831 5.472148 TCGTGTCGTTCTTACATTATGGTT 58.528 37.500 0.00 0.00 0.00 3.67
1401 1832 5.927689 TCGTGTCGTTCTTACATTATGGTTT 59.072 36.000 0.00 0.00 0.00 3.27
1402 1833 6.424509 TCGTGTCGTTCTTACATTATGGTTTT 59.575 34.615 0.00 0.00 0.00 2.43
1403 1834 7.041916 TCGTGTCGTTCTTACATTATGGTTTTT 60.042 33.333 0.00 0.00 0.00 1.94
1404 1835 7.267600 CGTGTCGTTCTTACATTATGGTTTTTC 59.732 37.037 0.00 0.00 0.00 2.29
1405 1836 8.287503 GTGTCGTTCTTACATTATGGTTTTTCT 58.712 33.333 0.00 0.00 0.00 2.52
1406 1837 9.491675 TGTCGTTCTTACATTATGGTTTTTCTA 57.508 29.630 0.00 0.00 0.00 2.10
1419 1850 5.956642 TGGTTTTTCTAATAAATGGTCCGC 58.043 37.500 0.00 0.00 0.00 5.54
1420 1851 5.712917 TGGTTTTTCTAATAAATGGTCCGCT 59.287 36.000 0.00 0.00 0.00 5.52
1421 1852 6.885376 TGGTTTTTCTAATAAATGGTCCGCTA 59.115 34.615 0.00 0.00 0.00 4.26
1422 1853 7.393796 TGGTTTTTCTAATAAATGGTCCGCTAA 59.606 33.333 0.00 0.00 0.00 3.09
1423 1854 8.245491 GGTTTTTCTAATAAATGGTCCGCTAAA 58.755 33.333 0.00 0.00 0.00 1.85
1424 1855 9.797556 GTTTTTCTAATAAATGGTCCGCTAAAT 57.202 29.630 0.00 0.00 0.00 1.40
1428 1859 9.841295 TTCTAATAAATGGTCCGCTAAATAAGT 57.159 29.630 0.00 0.00 0.00 2.24
1429 1860 9.268268 TCTAATAAATGGTCCGCTAAATAAGTG 57.732 33.333 0.00 0.00 35.34 3.16
1437 1868 3.188159 CGCTAAATAAGTGGTAGGGCA 57.812 47.619 0.00 0.00 31.67 5.36
1438 1869 3.537580 CGCTAAATAAGTGGTAGGGCAA 58.462 45.455 0.00 0.00 31.67 4.52
1439 1870 3.560068 CGCTAAATAAGTGGTAGGGCAAG 59.440 47.826 0.00 0.00 31.67 4.01
1440 1871 4.524053 GCTAAATAAGTGGTAGGGCAAGT 58.476 43.478 0.00 0.00 0.00 3.16
1441 1872 5.677567 GCTAAATAAGTGGTAGGGCAAGTA 58.322 41.667 0.00 0.00 0.00 2.24
1442 1873 6.296803 GCTAAATAAGTGGTAGGGCAAGTAT 58.703 40.000 0.00 0.00 0.00 2.12
1443 1874 6.771267 GCTAAATAAGTGGTAGGGCAAGTATT 59.229 38.462 0.00 0.00 0.00 1.89
1444 1875 7.935210 GCTAAATAAGTGGTAGGGCAAGTATTA 59.065 37.037 0.00 0.00 0.00 0.98
1445 1876 9.490379 CTAAATAAGTGGTAGGGCAAGTATTAG 57.510 37.037 0.00 0.00 0.00 1.73
1446 1877 3.840124 AGTGGTAGGGCAAGTATTAGC 57.160 47.619 0.00 0.00 0.00 3.09
1447 1878 2.102588 AGTGGTAGGGCAAGTATTAGCG 59.897 50.000 0.00 0.00 0.00 4.26
1448 1879 1.414919 TGGTAGGGCAAGTATTAGCGG 59.585 52.381 0.00 0.00 0.00 5.52
1449 1880 1.690352 GGTAGGGCAAGTATTAGCGGA 59.310 52.381 0.00 0.00 0.00 5.54
1450 1881 2.103601 GGTAGGGCAAGTATTAGCGGAA 59.896 50.000 0.00 0.00 0.00 4.30
1451 1882 2.622064 AGGGCAAGTATTAGCGGAAG 57.378 50.000 0.00 0.00 0.00 3.46
1452 1883 2.116238 AGGGCAAGTATTAGCGGAAGA 58.884 47.619 0.00 0.00 0.00 2.87
1453 1884 2.103263 AGGGCAAGTATTAGCGGAAGAG 59.897 50.000 0.00 0.00 0.00 2.85
1454 1885 2.102588 GGGCAAGTATTAGCGGAAGAGA 59.897 50.000 0.00 0.00 0.00 3.10
1455 1886 3.431766 GGGCAAGTATTAGCGGAAGAGAA 60.432 47.826 0.00 0.00 0.00 2.87
1456 1887 4.381411 GGCAAGTATTAGCGGAAGAGAAT 58.619 43.478 0.00 0.00 0.00 2.40
1457 1888 4.816925 GGCAAGTATTAGCGGAAGAGAATT 59.183 41.667 0.00 0.00 0.00 2.17
1458 1889 5.297029 GGCAAGTATTAGCGGAAGAGAATTT 59.703 40.000 0.00 0.00 0.00 1.82
1459 1890 6.423042 GCAAGTATTAGCGGAAGAGAATTTC 58.577 40.000 0.00 0.00 0.00 2.17
1460 1891 6.511929 GCAAGTATTAGCGGAAGAGAATTTCC 60.512 42.308 0.00 0.00 42.62 3.13
1468 1899 2.742589 GGAAGAGAATTTCCGTGTGACC 59.257 50.000 0.00 0.00 37.48 4.02
1469 1900 3.557264 GGAAGAGAATTTCCGTGTGACCT 60.557 47.826 0.00 0.00 37.48 3.85
1470 1901 3.771577 AGAGAATTTCCGTGTGACCTT 57.228 42.857 0.00 0.00 0.00 3.50
1471 1902 4.086706 AGAGAATTTCCGTGTGACCTTT 57.913 40.909 0.00 0.00 0.00 3.11
1472 1903 3.815401 AGAGAATTTCCGTGTGACCTTTG 59.185 43.478 0.00 0.00 0.00 2.77
1473 1904 3.813166 GAGAATTTCCGTGTGACCTTTGA 59.187 43.478 0.00 0.00 0.00 2.69
1474 1905 4.204012 AGAATTTCCGTGTGACCTTTGAA 58.796 39.130 0.00 0.00 0.00 2.69
1475 1906 3.982576 ATTTCCGTGTGACCTTTGAAC 57.017 42.857 0.00 0.00 0.00 3.18
1476 1907 1.292061 TTCCGTGTGACCTTTGAACG 58.708 50.000 0.00 0.00 0.00 3.95
1477 1908 0.460722 TCCGTGTGACCTTTGAACGA 59.539 50.000 0.00 0.00 36.38 3.85
1478 1909 1.069513 TCCGTGTGACCTTTGAACGAT 59.930 47.619 0.00 0.00 36.38 3.73
1479 1910 2.296752 TCCGTGTGACCTTTGAACGATA 59.703 45.455 0.00 0.00 36.38 2.92
1480 1911 2.666508 CCGTGTGACCTTTGAACGATAG 59.333 50.000 0.00 0.00 36.38 2.08
1494 1925 2.604046 CGATAGTTCCTCCCCAACAG 57.396 55.000 0.00 0.00 0.00 3.16
1495 1926 1.831736 CGATAGTTCCTCCCCAACAGT 59.168 52.381 0.00 0.00 0.00 3.55
1496 1927 2.418746 CGATAGTTCCTCCCCAACAGTG 60.419 54.545 0.00 0.00 0.00 3.66
1497 1928 0.690762 TAGTTCCTCCCCAACAGTGC 59.309 55.000 0.00 0.00 0.00 4.40
1498 1929 1.062488 AGTTCCTCCCCAACAGTGCT 61.062 55.000 0.00 0.00 0.00 4.40
1499 1930 0.606673 GTTCCTCCCCAACAGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
1500 1931 1.779061 TTCCTCCCCAACAGTGCTCC 61.779 60.000 0.00 0.00 0.00 4.70
1501 1932 2.227036 CCTCCCCAACAGTGCTCCT 61.227 63.158 0.00 0.00 0.00 3.69
1512 1943 3.554716 TGCTCCTGTGTGCACTCT 58.445 55.556 19.41 0.00 36.15 3.24
1513 1944 1.368950 TGCTCCTGTGTGCACTCTC 59.631 57.895 19.41 9.15 36.15 3.20
1514 1945 1.735920 GCTCCTGTGTGCACTCTCG 60.736 63.158 19.41 9.71 0.00 4.04
1515 1946 1.735920 CTCCTGTGTGCACTCTCGC 60.736 63.158 19.41 0.00 0.00 5.03
1516 1947 2.152297 CTCCTGTGTGCACTCTCGCT 62.152 60.000 19.41 0.00 0.00 4.93
1517 1948 1.301244 CCTGTGTGCACTCTCGCTT 60.301 57.895 19.41 0.00 0.00 4.68
1518 1949 0.882042 CCTGTGTGCACTCTCGCTTT 60.882 55.000 19.41 0.00 0.00 3.51
1519 1950 0.940126 CTGTGTGCACTCTCGCTTTT 59.060 50.000 19.41 0.00 0.00 2.27
1520 1951 0.657312 TGTGTGCACTCTCGCTTTTG 59.343 50.000 19.41 0.00 0.00 2.44
1521 1952 0.040958 GTGTGCACTCTCGCTTTTGG 60.041 55.000 19.41 0.00 0.00 3.28
1522 1953 1.081840 GTGCACTCTCGCTTTTGGC 60.082 57.895 10.32 0.00 37.64 4.52
1540 1971 2.856091 GCGCTGCCACGTAAATATAG 57.144 50.000 0.00 0.00 34.88 1.31
1541 1972 2.132762 GCGCTGCCACGTAAATATAGT 58.867 47.619 0.00 0.00 34.88 2.12
1542 1973 2.096909 GCGCTGCCACGTAAATATAGTG 60.097 50.000 0.00 0.00 35.79 2.74
1543 1974 2.096909 CGCTGCCACGTAAATATAGTGC 60.097 50.000 0.00 0.00 34.79 4.40
1544 1975 2.869801 GCTGCCACGTAAATATAGTGCA 59.130 45.455 0.00 0.00 34.79 4.57
1545 1976 3.059597 GCTGCCACGTAAATATAGTGCAG 60.060 47.826 0.00 0.00 40.01 4.41
1546 1977 3.462982 TGCCACGTAAATATAGTGCAGG 58.537 45.455 0.00 0.00 34.79 4.85
1547 1978 2.223377 GCCACGTAAATATAGTGCAGGC 59.777 50.000 0.00 0.00 34.79 4.85
1548 1979 2.475111 CCACGTAAATATAGTGCAGGCG 59.525 50.000 0.00 0.00 34.79 5.52
1549 1980 3.120792 CACGTAAATATAGTGCAGGCGT 58.879 45.455 0.00 0.00 0.00 5.68
1550 1981 3.181774 CACGTAAATATAGTGCAGGCGTC 59.818 47.826 0.00 0.00 0.00 5.19
1551 1982 2.404029 CGTAAATATAGTGCAGGCGTCG 59.596 50.000 0.00 0.00 0.00 5.12
1552 1983 1.865865 AAATATAGTGCAGGCGTCGG 58.134 50.000 0.00 0.00 0.00 4.79
1553 1984 0.600255 AATATAGTGCAGGCGTCGGC 60.600 55.000 11.43 11.43 38.90 5.54
1575 2006 3.850923 CGTTCGCCGTGTGTATGT 58.149 55.556 0.00 0.00 0.00 2.29
1576 2007 1.700029 CGTTCGCCGTGTGTATGTC 59.300 57.895 0.00 0.00 0.00 3.06
1577 2008 1.680105 CGTTCGCCGTGTGTATGTCC 61.680 60.000 0.00 0.00 0.00 4.02
1578 2009 1.444724 TTCGCCGTGTGTATGTCCG 60.445 57.895 0.00 0.00 0.00 4.79
1579 2010 3.550992 CGCCGTGTGTATGTCCGC 61.551 66.667 0.00 0.00 0.00 5.54
1580 2011 3.550992 GCCGTGTGTATGTCCGCG 61.551 66.667 0.00 0.00 0.00 6.46
1581 2012 3.550992 CCGTGTGTATGTCCGCGC 61.551 66.667 0.00 0.00 33.49 6.86
1582 2013 2.506217 CGTGTGTATGTCCGCGCT 60.506 61.111 5.56 0.00 0.00 5.92
1583 2014 2.092291 CGTGTGTATGTCCGCGCTT 61.092 57.895 5.56 0.00 0.00 4.68
1584 2015 1.708027 GTGTGTATGTCCGCGCTTC 59.292 57.895 5.56 0.00 0.00 3.86
1585 2016 0.736325 GTGTGTATGTCCGCGCTTCT 60.736 55.000 5.56 0.00 0.00 2.85
1586 2017 0.735978 TGTGTATGTCCGCGCTTCTG 60.736 55.000 5.56 0.00 0.00 3.02
1587 2018 0.457853 GTGTATGTCCGCGCTTCTGA 60.458 55.000 5.56 0.00 0.00 3.27
1588 2019 0.179137 TGTATGTCCGCGCTTCTGAG 60.179 55.000 5.56 0.00 0.00 3.35
1589 2020 0.179134 GTATGTCCGCGCTTCTGAGT 60.179 55.000 5.56 0.00 0.00 3.41
1590 2021 0.100682 TATGTCCGCGCTTCTGAGTC 59.899 55.000 5.56 0.00 0.00 3.36
1591 2022 1.877576 ATGTCCGCGCTTCTGAGTCA 61.878 55.000 5.56 0.00 0.00 3.41
1592 2023 1.372997 GTCCGCGCTTCTGAGTCAA 60.373 57.895 5.56 0.00 0.00 3.18
1593 2024 0.944311 GTCCGCGCTTCTGAGTCAAA 60.944 55.000 5.56 0.00 0.00 2.69
1594 2025 0.249699 TCCGCGCTTCTGAGTCAAAA 60.250 50.000 5.56 0.00 0.00 2.44
1595 2026 0.110644 CCGCGCTTCTGAGTCAAAAC 60.111 55.000 5.56 0.00 0.00 2.43
1596 2027 0.110644 CGCGCTTCTGAGTCAAAACC 60.111 55.000 5.56 0.00 0.00 3.27
1597 2028 0.944386 GCGCTTCTGAGTCAAAACCA 59.056 50.000 0.00 0.00 0.00 3.67
1598 2029 1.069636 GCGCTTCTGAGTCAAAACCAG 60.070 52.381 0.00 0.00 0.00 4.00
1599 2030 1.069636 CGCTTCTGAGTCAAAACCAGC 60.070 52.381 0.00 0.00 0.00 4.85
1600 2031 1.268079 GCTTCTGAGTCAAAACCAGCC 59.732 52.381 0.00 0.00 0.00 4.85
1601 2032 1.532868 CTTCTGAGTCAAAACCAGCCG 59.467 52.381 0.00 0.00 0.00 5.52
1602 2033 0.756294 TCTGAGTCAAAACCAGCCGA 59.244 50.000 0.00 0.00 0.00 5.54
1603 2034 0.868406 CTGAGTCAAAACCAGCCGAC 59.132 55.000 0.00 0.00 0.00 4.79
1604 2035 0.468226 TGAGTCAAAACCAGCCGACT 59.532 50.000 0.00 0.00 41.32 4.18
1605 2036 1.149148 GAGTCAAAACCAGCCGACTC 58.851 55.000 0.00 0.00 45.32 3.36
1606 2037 0.468226 AGTCAAAACCAGCCGACTCA 59.532 50.000 0.00 0.00 33.49 3.41
1607 2038 0.868406 GTCAAAACCAGCCGACTCAG 59.132 55.000 0.00 0.00 0.00 3.35
1608 2039 0.468226 TCAAAACCAGCCGACTCAGT 59.532 50.000 0.00 0.00 0.00 3.41
1609 2040 1.134220 TCAAAACCAGCCGACTCAGTT 60.134 47.619 0.00 0.00 0.00 3.16
1610 2041 1.002468 CAAAACCAGCCGACTCAGTTG 60.002 52.381 0.00 0.00 0.00 3.16
1611 2042 1.166531 AAACCAGCCGACTCAGTTGC 61.167 55.000 0.00 0.00 0.00 4.17
1612 2043 2.044806 AACCAGCCGACTCAGTTGCT 62.045 55.000 0.00 0.00 33.52 3.91
1613 2044 3.559024 CAGCCGACTCAGTTGCTG 58.441 61.111 13.93 13.93 44.43 4.41
1614 2045 2.031516 CAGCCGACTCAGTTGCTGG 61.032 63.158 18.19 2.87 45.69 4.85
1615 2046 2.743928 GCCGACTCAGTTGCTGGG 60.744 66.667 0.00 0.00 38.07 4.45
1617 2048 1.669115 CCGACTCAGTTGCTGGGTG 60.669 63.158 6.37 0.00 46.16 4.61
1618 2049 1.367471 CGACTCAGTTGCTGGGTGA 59.633 57.895 6.37 0.00 46.16 4.02
1619 2050 0.249868 CGACTCAGTTGCTGGGTGAA 60.250 55.000 6.37 0.00 46.16 3.18
1620 2051 1.517242 GACTCAGTTGCTGGGTGAAG 58.483 55.000 6.37 0.00 46.16 3.02
1621 2052 1.070758 GACTCAGTTGCTGGGTGAAGA 59.929 52.381 6.37 0.00 46.16 2.87
1622 2053 1.490490 ACTCAGTTGCTGGGTGAAGAA 59.510 47.619 0.30 0.00 44.30 2.52
1623 2054 2.107204 ACTCAGTTGCTGGGTGAAGAAT 59.893 45.455 0.30 0.00 44.30 2.40
1624 2055 2.486982 CTCAGTTGCTGGGTGAAGAATG 59.513 50.000 0.00 0.00 31.51 2.67
1625 2056 2.158623 TCAGTTGCTGGGTGAAGAATGT 60.159 45.455 0.00 0.00 31.51 2.71
1626 2057 2.624838 CAGTTGCTGGGTGAAGAATGTT 59.375 45.455 0.00 0.00 0.00 2.71
1627 2058 2.624838 AGTTGCTGGGTGAAGAATGTTG 59.375 45.455 0.00 0.00 0.00 3.33
1628 2059 0.961019 TGCTGGGTGAAGAATGTTGC 59.039 50.000 0.00 0.00 0.00 4.17
1629 2060 0.961019 GCTGGGTGAAGAATGTTGCA 59.039 50.000 0.00 0.00 0.00 4.08
1630 2061 1.547372 GCTGGGTGAAGAATGTTGCAT 59.453 47.619 0.00 0.00 0.00 3.96
1631 2062 2.754552 GCTGGGTGAAGAATGTTGCATA 59.245 45.455 0.00 0.00 0.00 3.14
1632 2063 3.181493 GCTGGGTGAAGAATGTTGCATAG 60.181 47.826 0.00 0.00 0.00 2.23
1633 2064 2.754552 TGGGTGAAGAATGTTGCATAGC 59.245 45.455 0.00 0.00 0.00 2.97
1634 2065 2.099756 GGGTGAAGAATGTTGCATAGCC 59.900 50.000 0.00 0.00 0.00 3.93
1635 2066 3.019564 GGTGAAGAATGTTGCATAGCCT 58.980 45.455 0.00 0.00 0.00 4.58
1636 2067 4.199310 GGTGAAGAATGTTGCATAGCCTA 58.801 43.478 0.00 0.00 0.00 3.93
1637 2068 4.035675 GGTGAAGAATGTTGCATAGCCTAC 59.964 45.833 0.00 0.00 0.00 3.18
1638 2069 3.871006 TGAAGAATGTTGCATAGCCTACG 59.129 43.478 0.00 0.00 0.00 3.51
1639 2070 3.543680 AGAATGTTGCATAGCCTACGT 57.456 42.857 0.00 0.00 0.00 3.57
1640 2071 3.198068 AGAATGTTGCATAGCCTACGTG 58.802 45.455 0.00 0.00 0.00 4.49
1641 2072 2.979814 ATGTTGCATAGCCTACGTGA 57.020 45.000 0.00 0.00 0.00 4.35
1642 2073 2.753055 TGTTGCATAGCCTACGTGAA 57.247 45.000 0.00 0.00 0.00 3.18
1643 2074 3.046968 TGTTGCATAGCCTACGTGAAA 57.953 42.857 0.00 0.00 0.00 2.69
1644 2075 3.403968 TGTTGCATAGCCTACGTGAAAA 58.596 40.909 0.00 0.00 0.00 2.29
1645 2076 4.006989 TGTTGCATAGCCTACGTGAAAAT 58.993 39.130 0.00 0.00 0.00 1.82
1646 2077 4.094294 TGTTGCATAGCCTACGTGAAAATC 59.906 41.667 0.00 0.00 0.00 2.17
1647 2078 3.867857 TGCATAGCCTACGTGAAAATCA 58.132 40.909 0.00 0.00 0.00 2.57
1648 2079 4.257731 TGCATAGCCTACGTGAAAATCAA 58.742 39.130 0.00 0.00 0.00 2.57
1649 2080 4.697828 TGCATAGCCTACGTGAAAATCAAA 59.302 37.500 0.00 0.00 0.00 2.69
1650 2081 5.163764 TGCATAGCCTACGTGAAAATCAAAG 60.164 40.000 0.00 0.00 0.00 2.77
1651 2082 5.064707 GCATAGCCTACGTGAAAATCAAAGA 59.935 40.000 0.00 0.00 0.00 2.52
1652 2083 6.709643 CATAGCCTACGTGAAAATCAAAGAG 58.290 40.000 0.00 0.00 0.00 2.85
1653 2084 4.003648 AGCCTACGTGAAAATCAAAGAGG 58.996 43.478 0.00 0.00 0.00 3.69
1654 2085 4.000988 GCCTACGTGAAAATCAAAGAGGA 58.999 43.478 0.00 0.00 0.00 3.71
1655 2086 4.093556 GCCTACGTGAAAATCAAAGAGGAG 59.906 45.833 0.00 0.00 0.00 3.69
1656 2087 5.479306 CCTACGTGAAAATCAAAGAGGAGA 58.521 41.667 0.00 0.00 0.00 3.71
1657 2088 5.578727 CCTACGTGAAAATCAAAGAGGAGAG 59.421 44.000 0.00 0.00 0.00 3.20
1658 2089 3.748568 ACGTGAAAATCAAAGAGGAGAGC 59.251 43.478 0.00 0.00 0.00 4.09
1659 2090 3.999663 CGTGAAAATCAAAGAGGAGAGCT 59.000 43.478 0.00 0.00 0.00 4.09
1660 2091 4.092675 CGTGAAAATCAAAGAGGAGAGCTC 59.907 45.833 5.27 5.27 0.00 4.09
1661 2092 4.999950 GTGAAAATCAAAGAGGAGAGCTCA 59.000 41.667 17.77 0.00 0.00 4.26
1662 2093 5.122082 GTGAAAATCAAAGAGGAGAGCTCAG 59.878 44.000 17.77 0.00 0.00 3.35
1663 2094 2.985957 ATCAAAGAGGAGAGCTCAGC 57.014 50.000 17.77 7.30 0.00 4.26
1664 2095 0.901124 TCAAAGAGGAGAGCTCAGCC 59.099 55.000 17.77 16.56 0.00 4.85
1665 2096 0.903942 CAAAGAGGAGAGCTCAGCCT 59.096 55.000 23.48 23.48 33.97 4.58
1666 2097 2.106566 CAAAGAGGAGAGCTCAGCCTA 58.893 52.381 23.35 0.00 30.70 3.93
1667 2098 2.699846 CAAAGAGGAGAGCTCAGCCTAT 59.300 50.000 23.35 19.11 30.70 2.57
1668 2099 3.893753 AAGAGGAGAGCTCAGCCTATA 57.106 47.619 23.35 0.00 30.70 1.31
1669 2100 3.893753 AGAGGAGAGCTCAGCCTATAA 57.106 47.619 23.35 0.00 30.70 0.98
1670 2101 4.191804 AGAGGAGAGCTCAGCCTATAAA 57.808 45.455 23.35 0.00 30.70 1.40
1671 2102 4.750941 AGAGGAGAGCTCAGCCTATAAAT 58.249 43.478 23.35 5.55 30.70 1.40
1672 2103 4.772100 AGAGGAGAGCTCAGCCTATAAATC 59.228 45.833 23.35 12.89 30.70 2.17
1673 2104 3.837731 AGGAGAGCTCAGCCTATAAATCC 59.162 47.826 22.38 13.34 0.00 3.01
1674 2105 3.580458 GGAGAGCTCAGCCTATAAATCCA 59.420 47.826 17.77 0.00 0.00 3.41
1675 2106 4.224818 GGAGAGCTCAGCCTATAAATCCAT 59.775 45.833 17.77 0.00 0.00 3.41
1676 2107 5.280419 GGAGAGCTCAGCCTATAAATCCATT 60.280 44.000 17.77 0.00 0.00 3.16
1677 2108 5.558818 AGAGCTCAGCCTATAAATCCATTG 58.441 41.667 17.77 0.00 0.00 2.82
1678 2109 4.077822 AGCTCAGCCTATAAATCCATTGC 58.922 43.478 0.00 0.00 0.00 3.56
1679 2110 3.822735 GCTCAGCCTATAAATCCATTGCA 59.177 43.478 0.00 0.00 0.00 4.08
1680 2111 4.279169 GCTCAGCCTATAAATCCATTGCAA 59.721 41.667 0.00 0.00 0.00 4.08
1681 2112 5.047519 GCTCAGCCTATAAATCCATTGCAAT 60.048 40.000 5.99 5.99 0.00 3.56
1682 2113 6.151648 GCTCAGCCTATAAATCCATTGCAATA 59.848 38.462 12.53 0.00 0.00 1.90
1683 2114 7.452880 TCAGCCTATAAATCCATTGCAATAC 57.547 36.000 12.53 0.00 0.00 1.89
1684 2115 6.149308 TCAGCCTATAAATCCATTGCAATACG 59.851 38.462 12.53 5.48 0.00 3.06
1685 2116 6.149308 CAGCCTATAAATCCATTGCAATACGA 59.851 38.462 12.53 11.03 0.00 3.43
1686 2117 6.372659 AGCCTATAAATCCATTGCAATACGAG 59.627 38.462 12.53 0.00 0.00 4.18
1687 2118 6.371548 GCCTATAAATCCATTGCAATACGAGA 59.628 38.462 12.53 7.31 0.00 4.04
1688 2119 7.413438 GCCTATAAATCCATTGCAATACGAGAG 60.413 40.741 12.53 0.00 0.00 3.20
1689 2120 7.819415 CCTATAAATCCATTGCAATACGAGAGA 59.181 37.037 12.53 3.07 0.00 3.10
1690 2121 5.741388 AAATCCATTGCAATACGAGAGAC 57.259 39.130 12.53 0.00 0.00 3.36
1700 2131 3.538841 CGAGAGACGTGTGCAACC 58.461 61.111 0.00 0.00 34.36 3.77
1701 2132 1.299850 CGAGAGACGTGTGCAACCA 60.300 57.895 0.00 0.00 34.36 3.67
1702 2133 1.548973 CGAGAGACGTGTGCAACCAC 61.549 60.000 0.00 0.00 42.40 4.16
1709 2140 2.751837 TGTGCAACCACACCGCAA 60.752 55.556 0.00 0.00 46.51 4.85
1710 2141 2.026014 GTGCAACCACACCGCAAG 59.974 61.111 0.00 0.00 41.67 4.01
1725 2156 1.797046 CGCAAGGTATATCTGCAGCAG 59.203 52.381 17.10 17.10 0.00 4.24
1759 2191 2.094286 ACAAGATGAGCTCTGGAAGACG 60.094 50.000 16.19 0.00 38.67 4.18
1762 2194 1.748493 GATGAGCTCTGGAAGACGTCT 59.252 52.381 13.58 13.58 38.67 4.18
1764 2196 1.964223 TGAGCTCTGGAAGACGTCTTT 59.036 47.619 30.22 13.85 38.67 2.52
1777 2209 1.841663 CGTCTTTGCCGGAGTTGGTG 61.842 60.000 5.05 0.00 0.00 4.17
1821 2253 2.040145 TGATGACCATCAACAGCCAGAA 59.960 45.455 10.00 0.00 44.14 3.02
1825 2257 0.609957 CCATCAACAGCCAGAAGCCA 60.610 55.000 0.00 0.00 45.47 4.75
1830 2262 0.475906 AACAGCCAGAAGCCAGACTT 59.524 50.000 0.00 0.00 45.47 3.01
1833 2265 0.990374 AGCCAGAAGCCAGACTTGAT 59.010 50.000 0.00 0.00 45.47 2.57
1835 2267 1.747709 CCAGAAGCCAGACTTGATGG 58.252 55.000 0.00 0.00 39.29 3.51
1873 2305 4.115199 ATCAGTCCAAGCCCGCCC 62.115 66.667 0.00 0.00 0.00 6.13
1891 2323 1.082038 CAGCTTCGACTCGACACGT 60.082 57.895 0.00 0.00 34.89 4.49
1911 2343 0.387929 GTCTGTGTGTTCCTCGACCA 59.612 55.000 0.00 0.00 0.00 4.02
1923 2355 2.038690 TCGACCAACGAGACAAGCT 58.961 52.632 0.00 0.00 46.45 3.74
1925 2357 1.610038 TCGACCAACGAGACAAGCTTA 59.390 47.619 0.00 0.00 46.45 3.09
1958 2390 1.448013 GTCCCTGTCGTTGGCTAGC 60.448 63.158 6.04 6.04 0.00 3.42
1993 2425 6.206829 GTGTTTTTCTAAGGAAGCTACATGGT 59.793 38.462 0.00 0.00 32.61 3.55
2000 2432 5.763876 AAGGAAGCTACATGGTAGAGTTT 57.236 39.130 7.55 0.00 0.00 2.66
2001 2433 6.869206 AAGGAAGCTACATGGTAGAGTTTA 57.131 37.500 7.55 0.00 0.00 2.01
2002 2434 7.439108 AAGGAAGCTACATGGTAGAGTTTAT 57.561 36.000 7.55 0.00 0.00 1.40
2003 2435 7.056844 AGGAAGCTACATGGTAGAGTTTATC 57.943 40.000 7.55 0.00 0.00 1.75
2026 2460 0.412640 AACCTCCTTAGAGACGGGGT 59.587 55.000 0.00 0.00 43.39 4.95
2031 2465 1.358787 TCCTTAGAGACGGGGTGGTTA 59.641 52.381 0.00 0.00 0.00 2.85
2032 2466 2.181975 CCTTAGAGACGGGGTGGTTAA 58.818 52.381 0.00 0.00 0.00 2.01
2039 2477 2.101917 AGACGGGGTGGTTAACGATATG 59.898 50.000 0.00 0.00 0.00 1.78
2068 2703 5.450550 GCTGGCGATCATATATGTAGCTGTA 60.451 44.000 20.28 11.72 0.00 2.74
2097 2732 5.746245 TCGTTTTCTGTGCTTATGGTTTTTG 59.254 36.000 0.00 0.00 0.00 2.44
2115 2750 7.497249 TGGTTTTTGGAATAAATGGTTTCACAG 59.503 33.333 0.00 0.00 0.00 3.66
2135 2770 4.192317 CAGAATAAGTTGTAGGGTCCAGC 58.808 47.826 0.00 0.00 0.00 4.85
2172 2858 8.579850 TTAGGAAATTGCATGTTCTCAATAGT 57.420 30.769 9.12 0.00 33.05 2.12
2173 2859 7.472334 AGGAAATTGCATGTTCTCAATAGTT 57.528 32.000 9.12 0.00 33.05 2.24
2241 2927 6.159575 TGAGACATATCTTTTCCATTACCCCA 59.840 38.462 0.00 0.00 34.34 4.96
2244 2930 6.077322 ACATATCTTTTCCATTACCCCATGG 58.923 40.000 4.14 4.14 44.80 3.66
2248 2938 4.015730 TCTTTTCCATTACCCCATGGGAAT 60.016 41.667 33.62 21.34 46.90 3.01
2304 3012 3.719268 ACAAATCCTATGGAGCACACA 57.281 42.857 0.00 0.00 34.05 3.72
2308 3016 5.766670 ACAAATCCTATGGAGCACACATATG 59.233 40.000 0.00 0.00 34.05 1.78
2323 3031 6.518369 GCACACATATGGTATAGAGCACCTTA 60.518 42.308 7.80 0.00 35.48 2.69
2325 3033 6.553476 ACACATATGGTATAGAGCACCTTACA 59.447 38.462 7.80 0.00 35.48 2.41
2333 3041 3.795638 GCACCTTACAGGCGCTAC 58.204 61.111 7.64 0.00 40.20 3.58
2334 3042 1.079405 GCACCTTACAGGCGCTACA 60.079 57.895 7.64 0.00 40.20 2.74
2366 3075 1.194218 TCTGATCCGGATGTTGCTGA 58.806 50.000 24.82 13.62 0.00 4.26
2374 3083 2.263077 CGGATGTTGCTGAGTGTACTC 58.737 52.381 5.09 5.09 43.15 2.59
2404 3113 9.485206 GTAATATATTACGGTGAGATGTGGTTT 57.515 33.333 17.60 0.00 34.04 3.27
2408 3117 2.426522 ACGGTGAGATGTGGTTTGATG 58.573 47.619 0.00 0.00 0.00 3.07
2409 3118 1.739466 CGGTGAGATGTGGTTTGATGG 59.261 52.381 0.00 0.00 0.00 3.51
2411 3120 3.420893 GGTGAGATGTGGTTTGATGGAA 58.579 45.455 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.318313 AGTACCCAGCATACTTGGCTAT 58.682 45.455 0.00 0.00 40.23 2.97
75 76 2.359900 CACCTTGCACTACAGGAATCC 58.640 52.381 9.19 0.00 0.00 3.01
231 235 8.746052 TGGCTGCATAACTATTATTACAAAGT 57.254 30.769 0.50 0.00 0.00 2.66
234 238 6.998074 AGCTGGCTGCATAACTATTATTACAA 59.002 34.615 18.84 0.00 45.94 2.41
237 241 7.453393 AGAAGCTGGCTGCATAACTATTATTA 58.547 34.615 18.84 0.00 45.94 0.98
257 586 6.793492 ATAGACTCACAAACTTCAAGAAGC 57.207 37.500 9.62 0.00 41.99 3.86
259 588 7.042051 CGGAAATAGACTCACAAACTTCAAGAA 60.042 37.037 0.00 0.00 0.00 2.52
264 593 4.142881 GCCGGAAATAGACTCACAAACTTC 60.143 45.833 5.05 0.00 0.00 3.01
274 603 1.064758 TGCCAATGCCGGAAATAGACT 60.065 47.619 5.05 0.00 36.33 3.24
277 606 1.679139 TCTGCCAATGCCGGAAATAG 58.321 50.000 5.05 0.00 36.33 1.73
361 691 7.633789 ACAGGGTAAATGATCACTAGAAACAT 58.366 34.615 0.00 0.00 0.00 2.71
362 692 7.016153 ACAGGGTAAATGATCACTAGAAACA 57.984 36.000 0.00 0.00 0.00 2.83
417 750 7.232534 TGCACAATACCCTTAACATTTTTCTCT 59.767 33.333 0.00 0.00 0.00 3.10
418 751 7.328493 GTGCACAATACCCTTAACATTTTTCTC 59.672 37.037 13.17 0.00 0.00 2.87
421 754 6.183361 TGGTGCACAATACCCTTAACATTTTT 60.183 34.615 20.43 0.00 37.40 1.94
489 825 5.938125 AGCTAATGTATAATACAAAGCCCGG 59.062 40.000 2.54 0.00 45.42 5.73
605 942 1.544724 TGCAAACCAAGCTACATCCC 58.455 50.000 0.00 0.00 0.00 3.85
645 983 3.628032 GCTAGTATTGGGAAACTTGCCTC 59.372 47.826 1.47 0.00 38.15 4.70
657 995 7.012421 GGACTGTTTTCCTAATGCTAGTATTGG 59.988 40.741 15.50 12.44 32.24 3.16
662 1000 5.499004 TGGACTGTTTTCCTAATGCTAGT 57.501 39.130 0.00 0.00 36.51 2.57
666 1004 5.904362 AGATTGGACTGTTTTCCTAATGC 57.096 39.130 0.00 0.00 36.51 3.56
680 1033 4.569943 TCAACTACTGAGCAAGATTGGAC 58.430 43.478 0.00 0.00 0.00 4.02
686 1039 4.216257 GGCAAATTCAACTACTGAGCAAGA 59.784 41.667 0.00 0.00 34.81 3.02
687 1040 4.022935 TGGCAAATTCAACTACTGAGCAAG 60.023 41.667 0.00 0.00 34.81 4.01
699 1052 2.632512 GAGGGGAAGTTGGCAAATTCAA 59.367 45.455 32.99 0.00 0.00 2.69
726 1079 2.159057 GCTGATGGGCATTCGGATTTTT 60.159 45.455 0.00 0.00 0.00 1.94
731 1084 2.192979 GGCTGATGGGCATTCGGA 59.807 61.111 0.00 0.00 40.53 4.55
734 1087 0.185901 TAAGGGGCTGATGGGCATTC 59.814 55.000 0.00 0.00 42.84 2.67
741 1094 1.035139 GGCACATTAAGGGGCTGATG 58.965 55.000 14.82 0.00 44.23 3.07
748 1101 2.435372 TGGCTAAGGCACATTAAGGG 57.565 50.000 0.00 0.00 40.87 3.95
793 1147 4.274459 CGGGAGAATCTTATGCCAAAAGAG 59.726 45.833 0.00 0.00 36.46 2.85
795 1149 4.199310 TCGGGAGAATCTTATGCCAAAAG 58.801 43.478 0.00 0.00 34.75 2.27
919 1273 1.153309 GTATACAAAGCCGGCCGGT 60.153 57.895 42.53 27.53 37.65 5.28
946 1330 0.330604 AGGCTTGGTGTCATGCTGAT 59.669 50.000 0.00 0.00 41.88 2.90
948 1332 2.048444 ATAGGCTTGGTGTCATGCTG 57.952 50.000 0.00 0.00 41.88 4.41
1013 1444 7.248976 TCAGATATATGTGGGAGGTCTATTGT 58.751 38.462 9.79 0.00 0.00 2.71
1017 1448 6.864421 ACTTCAGATATATGTGGGAGGTCTA 58.136 40.000 9.79 0.00 0.00 2.59
1060 1491 2.495270 TGTCTTCTGAGAGGTCATCTGC 59.505 50.000 0.00 0.00 38.84 4.26
1285 1716 1.000506 TGCTTAAGAGAAACGCTCCGT 59.999 47.619 6.67 0.00 45.10 4.69
1286 1717 1.710013 TGCTTAAGAGAAACGCTCCG 58.290 50.000 6.67 0.00 45.10 4.63
1287 1718 4.630069 TGTATTGCTTAAGAGAAACGCTCC 59.370 41.667 6.67 0.00 45.10 4.70
1288 1719 5.779806 TGTATTGCTTAAGAGAAACGCTC 57.220 39.130 6.67 0.00 44.29 5.03
1289 1720 6.018669 GCTATGTATTGCTTAAGAGAAACGCT 60.019 38.462 6.67 0.00 0.00 5.07
1290 1721 6.130058 GCTATGTATTGCTTAAGAGAAACGC 58.870 40.000 6.67 0.00 0.00 4.84
1291 1722 7.222805 TCTGCTATGTATTGCTTAAGAGAAACG 59.777 37.037 6.67 0.00 0.00 3.60
1292 1723 8.425577 TCTGCTATGTATTGCTTAAGAGAAAC 57.574 34.615 6.67 0.00 0.00 2.78
1293 1724 8.260818 ACTCTGCTATGTATTGCTTAAGAGAAA 58.739 33.333 6.67 0.00 33.65 2.52
1294 1725 7.786030 ACTCTGCTATGTATTGCTTAAGAGAA 58.214 34.615 6.67 0.00 33.65 2.87
1295 1726 7.353414 ACTCTGCTATGTATTGCTTAAGAGA 57.647 36.000 6.67 0.00 33.65 3.10
1296 1727 7.708322 TCAACTCTGCTATGTATTGCTTAAGAG 59.292 37.037 6.67 10.35 34.70 2.85
1297 1728 7.555965 TCAACTCTGCTATGTATTGCTTAAGA 58.444 34.615 6.67 0.00 0.00 2.10
1298 1729 7.776933 TCAACTCTGCTATGTATTGCTTAAG 57.223 36.000 0.00 0.00 0.00 1.85
1299 1730 8.450964 GTTTCAACTCTGCTATGTATTGCTTAA 58.549 33.333 0.50 0.00 0.00 1.85
1300 1731 7.606073 TGTTTCAACTCTGCTATGTATTGCTTA 59.394 33.333 0.50 0.00 0.00 3.09
1301 1732 6.430925 TGTTTCAACTCTGCTATGTATTGCTT 59.569 34.615 0.50 0.00 0.00 3.91
1302 1733 5.939883 TGTTTCAACTCTGCTATGTATTGCT 59.060 36.000 0.50 0.00 0.00 3.91
1303 1734 6.182039 TGTTTCAACTCTGCTATGTATTGC 57.818 37.500 0.00 0.00 0.00 3.56
1304 1735 7.269084 CGTTTGTTTCAACTCTGCTATGTATTG 59.731 37.037 0.00 0.00 0.00 1.90
1305 1736 7.298122 CGTTTGTTTCAACTCTGCTATGTATT 58.702 34.615 0.00 0.00 0.00 1.89
1306 1737 6.128282 CCGTTTGTTTCAACTCTGCTATGTAT 60.128 38.462 0.00 0.00 0.00 2.29
1307 1738 5.178623 CCGTTTGTTTCAACTCTGCTATGTA 59.821 40.000 0.00 0.00 0.00 2.29
1308 1739 4.024048 CCGTTTGTTTCAACTCTGCTATGT 60.024 41.667 0.00 0.00 0.00 2.29
1309 1740 4.466828 CCGTTTGTTTCAACTCTGCTATG 58.533 43.478 0.00 0.00 0.00 2.23
1310 1741 3.502211 CCCGTTTGTTTCAACTCTGCTAT 59.498 43.478 0.00 0.00 0.00 2.97
1311 1742 2.875933 CCCGTTTGTTTCAACTCTGCTA 59.124 45.455 0.00 0.00 0.00 3.49
1312 1743 1.676006 CCCGTTTGTTTCAACTCTGCT 59.324 47.619 0.00 0.00 0.00 4.24
1313 1744 1.269051 CCCCGTTTGTTTCAACTCTGC 60.269 52.381 0.00 0.00 0.00 4.26
1314 1745 1.269051 GCCCCGTTTGTTTCAACTCTG 60.269 52.381 0.00 0.00 0.00 3.35
1315 1746 1.029681 GCCCCGTTTGTTTCAACTCT 58.970 50.000 0.00 0.00 0.00 3.24
1316 1747 0.031585 GGCCCCGTTTGTTTCAACTC 59.968 55.000 0.00 0.00 0.00 3.01
1317 1748 1.730451 CGGCCCCGTTTGTTTCAACT 61.730 55.000 0.00 0.00 34.35 3.16
1318 1749 1.299544 CGGCCCCGTTTGTTTCAAC 60.300 57.895 0.00 0.00 34.35 3.18
1319 1750 2.491022 CCGGCCCCGTTTGTTTCAA 61.491 57.895 5.93 0.00 37.81 2.69
1320 1751 2.907917 CCGGCCCCGTTTGTTTCA 60.908 61.111 5.93 0.00 37.81 2.69
1321 1752 2.491897 AACCGGCCCCGTTTGTTTC 61.492 57.895 0.00 0.00 37.81 2.78
1322 1753 2.442458 AACCGGCCCCGTTTGTTT 60.442 55.556 0.00 0.00 37.81 2.83
1323 1754 3.220658 CAACCGGCCCCGTTTGTT 61.221 61.111 0.00 2.04 37.13 2.83
1351 1782 3.493350 GCTACATATATGATCCCTGCCGG 60.493 52.174 19.63 0.00 0.00 6.13
1352 1783 3.386078 AGCTACATATATGATCCCTGCCG 59.614 47.826 19.63 0.00 0.00 5.69
1353 1784 4.406972 TGAGCTACATATATGATCCCTGCC 59.593 45.833 19.63 8.10 0.00 4.85
1354 1785 5.604758 TGAGCTACATATATGATCCCTGC 57.395 43.478 19.63 12.20 0.00 4.85
1355 1786 6.040278 ACGATGAGCTACATATATGATCCCTG 59.960 42.308 19.63 3.97 39.56 4.45
1356 1787 6.040278 CACGATGAGCTACATATATGATCCCT 59.960 42.308 19.63 9.18 39.56 4.20
1357 1788 6.183360 ACACGATGAGCTACATATATGATCCC 60.183 42.308 19.63 4.82 39.56 3.85
1358 1789 6.800543 ACACGATGAGCTACATATATGATCC 58.199 40.000 19.63 6.46 39.56 3.36
1359 1790 6.630840 CGACACGATGAGCTACATATATGATC 59.369 42.308 19.63 9.27 39.56 2.92
1360 1791 6.094186 ACGACACGATGAGCTACATATATGAT 59.906 38.462 19.63 6.41 39.56 2.45
1361 1792 5.411669 ACGACACGATGAGCTACATATATGA 59.588 40.000 19.63 2.59 39.56 2.15
1362 1793 5.631992 ACGACACGATGAGCTACATATATG 58.368 41.667 11.29 11.29 39.56 1.78
1363 1794 5.881777 ACGACACGATGAGCTACATATAT 57.118 39.130 0.00 0.00 39.56 0.86
1364 1795 5.469084 AGAACGACACGATGAGCTACATATA 59.531 40.000 0.00 0.00 39.56 0.86
1365 1796 4.276183 AGAACGACACGATGAGCTACATAT 59.724 41.667 0.00 0.00 39.56 1.78
1366 1797 3.626217 AGAACGACACGATGAGCTACATA 59.374 43.478 0.00 0.00 39.56 2.29
1367 1798 2.423892 AGAACGACACGATGAGCTACAT 59.576 45.455 0.00 0.00 42.47 2.29
1368 1799 1.810755 AGAACGACACGATGAGCTACA 59.189 47.619 0.00 0.00 0.00 2.74
1369 1800 2.546195 AGAACGACACGATGAGCTAC 57.454 50.000 0.00 0.00 0.00 3.58
1370 1801 3.437741 TGTAAGAACGACACGATGAGCTA 59.562 43.478 0.00 0.00 0.00 3.32
1371 1802 2.228103 TGTAAGAACGACACGATGAGCT 59.772 45.455 0.00 0.00 0.00 4.09
1372 1803 2.592194 TGTAAGAACGACACGATGAGC 58.408 47.619 0.00 0.00 0.00 4.26
1373 1804 6.074835 CCATAATGTAAGAACGACACGATGAG 60.075 42.308 0.00 0.00 29.61 2.90
1374 1805 5.746721 CCATAATGTAAGAACGACACGATGA 59.253 40.000 0.00 0.00 29.61 2.92
1375 1806 5.518847 ACCATAATGTAAGAACGACACGATG 59.481 40.000 0.00 0.00 0.00 3.84
1376 1807 5.657474 ACCATAATGTAAGAACGACACGAT 58.343 37.500 0.00 0.00 0.00 3.73
1377 1808 5.063180 ACCATAATGTAAGAACGACACGA 57.937 39.130 0.00 0.00 0.00 4.35
1378 1809 5.773239 AACCATAATGTAAGAACGACACG 57.227 39.130 0.00 0.00 0.00 4.49
1379 1810 8.287503 AGAAAAACCATAATGTAAGAACGACAC 58.712 33.333 0.00 0.00 0.00 3.67
1380 1811 8.385898 AGAAAAACCATAATGTAAGAACGACA 57.614 30.769 0.00 0.00 0.00 4.35
1393 1824 8.192110 GCGGACCATTTATTAGAAAAACCATAA 58.808 33.333 0.00 0.00 0.00 1.90
1394 1825 7.558444 AGCGGACCATTTATTAGAAAAACCATA 59.442 33.333 0.00 0.00 0.00 2.74
1395 1826 6.379988 AGCGGACCATTTATTAGAAAAACCAT 59.620 34.615 0.00 0.00 0.00 3.55
1396 1827 5.712917 AGCGGACCATTTATTAGAAAAACCA 59.287 36.000 0.00 0.00 0.00 3.67
1397 1828 6.203808 AGCGGACCATTTATTAGAAAAACC 57.796 37.500 0.00 0.00 0.00 3.27
1398 1829 9.797556 ATTTAGCGGACCATTTATTAGAAAAAC 57.202 29.630 0.00 0.00 0.00 2.43
1402 1833 9.841295 ACTTATTTAGCGGACCATTTATTAGAA 57.159 29.630 0.00 0.00 0.00 2.10
1403 1834 9.268268 CACTTATTTAGCGGACCATTTATTAGA 57.732 33.333 0.00 0.00 0.00 2.10
1404 1835 8.504005 CCACTTATTTAGCGGACCATTTATTAG 58.496 37.037 0.00 0.00 0.00 1.73
1405 1836 7.994334 ACCACTTATTTAGCGGACCATTTATTA 59.006 33.333 0.00 0.00 30.25 0.98
1406 1837 6.831868 ACCACTTATTTAGCGGACCATTTATT 59.168 34.615 0.00 0.00 30.25 1.40
1407 1838 6.362248 ACCACTTATTTAGCGGACCATTTAT 58.638 36.000 0.00 0.00 30.25 1.40
1408 1839 5.747342 ACCACTTATTTAGCGGACCATTTA 58.253 37.500 0.00 0.00 30.25 1.40
1409 1840 4.595986 ACCACTTATTTAGCGGACCATTT 58.404 39.130 0.00 0.00 30.25 2.32
1410 1841 4.230745 ACCACTTATTTAGCGGACCATT 57.769 40.909 0.00 0.00 30.25 3.16
1411 1842 3.926058 ACCACTTATTTAGCGGACCAT 57.074 42.857 0.00 0.00 30.25 3.55
1412 1843 3.133362 CCTACCACTTATTTAGCGGACCA 59.867 47.826 0.00 0.00 30.25 4.02
1413 1844 3.493873 CCCTACCACTTATTTAGCGGACC 60.494 52.174 0.00 0.00 30.25 4.46
1414 1845 3.725490 CCCTACCACTTATTTAGCGGAC 58.275 50.000 0.00 0.00 30.25 4.79
1415 1846 2.103601 GCCCTACCACTTATTTAGCGGA 59.896 50.000 0.00 0.00 30.25 5.54
1416 1847 2.158871 TGCCCTACCACTTATTTAGCGG 60.159 50.000 0.00 0.00 32.02 5.52
1417 1848 3.188159 TGCCCTACCACTTATTTAGCG 57.812 47.619 0.00 0.00 0.00 4.26
1418 1849 4.524053 ACTTGCCCTACCACTTATTTAGC 58.476 43.478 0.00 0.00 0.00 3.09
1419 1850 9.490379 CTAATACTTGCCCTACCACTTATTTAG 57.510 37.037 0.00 0.00 0.00 1.85
1420 1851 7.935210 GCTAATACTTGCCCTACCACTTATTTA 59.065 37.037 0.00 0.00 0.00 1.40
1421 1852 6.771267 GCTAATACTTGCCCTACCACTTATTT 59.229 38.462 0.00 0.00 0.00 1.40
1422 1853 6.296803 GCTAATACTTGCCCTACCACTTATT 58.703 40.000 0.00 0.00 0.00 1.40
1423 1854 5.510861 CGCTAATACTTGCCCTACCACTTAT 60.511 44.000 0.00 0.00 0.00 1.73
1424 1855 4.202182 CGCTAATACTTGCCCTACCACTTA 60.202 45.833 0.00 0.00 0.00 2.24
1425 1856 3.431766 CGCTAATACTTGCCCTACCACTT 60.432 47.826 0.00 0.00 0.00 3.16
1426 1857 2.102588 CGCTAATACTTGCCCTACCACT 59.897 50.000 0.00 0.00 0.00 4.00
1427 1858 2.480845 CGCTAATACTTGCCCTACCAC 58.519 52.381 0.00 0.00 0.00 4.16
1428 1859 1.414919 CCGCTAATACTTGCCCTACCA 59.585 52.381 0.00 0.00 0.00 3.25
1429 1860 1.690352 TCCGCTAATACTTGCCCTACC 59.310 52.381 0.00 0.00 0.00 3.18
1430 1861 3.069158 TCTTCCGCTAATACTTGCCCTAC 59.931 47.826 0.00 0.00 0.00 3.18
1431 1862 3.302161 TCTTCCGCTAATACTTGCCCTA 58.698 45.455 0.00 0.00 0.00 3.53
1432 1863 2.103263 CTCTTCCGCTAATACTTGCCCT 59.897 50.000 0.00 0.00 0.00 5.19
1433 1864 2.102588 TCTCTTCCGCTAATACTTGCCC 59.897 50.000 0.00 0.00 0.00 5.36
1434 1865 3.454371 TCTCTTCCGCTAATACTTGCC 57.546 47.619 0.00 0.00 0.00 4.52
1435 1866 5.993106 AATTCTCTTCCGCTAATACTTGC 57.007 39.130 0.00 0.00 0.00 4.01
1436 1867 6.949449 GGAAATTCTCTTCCGCTAATACTTG 58.051 40.000 0.00 0.00 35.79 3.16
1447 1878 2.742589 GGTCACACGGAAATTCTCTTCC 59.257 50.000 0.00 0.00 41.40 3.46
1448 1879 3.665190 AGGTCACACGGAAATTCTCTTC 58.335 45.455 0.00 0.00 0.00 2.87
1449 1880 3.771577 AGGTCACACGGAAATTCTCTT 57.228 42.857 0.00 0.00 0.00 2.85
1450 1881 3.771577 AAGGTCACACGGAAATTCTCT 57.228 42.857 0.00 0.00 0.00 3.10
1451 1882 3.813166 TCAAAGGTCACACGGAAATTCTC 59.187 43.478 0.00 0.00 0.00 2.87
1452 1883 3.815809 TCAAAGGTCACACGGAAATTCT 58.184 40.909 0.00 0.00 0.00 2.40
1453 1884 4.287720 GTTCAAAGGTCACACGGAAATTC 58.712 43.478 0.00 0.00 0.00 2.17
1454 1885 3.242936 CGTTCAAAGGTCACACGGAAATT 60.243 43.478 0.00 0.00 0.00 1.82
1455 1886 2.289547 CGTTCAAAGGTCACACGGAAAT 59.710 45.455 0.00 0.00 0.00 2.17
1456 1887 1.666700 CGTTCAAAGGTCACACGGAAA 59.333 47.619 0.00 0.00 0.00 3.13
1457 1888 1.134759 TCGTTCAAAGGTCACACGGAA 60.135 47.619 0.00 0.00 0.00 4.30
1458 1889 0.460722 TCGTTCAAAGGTCACACGGA 59.539 50.000 0.00 0.00 0.00 4.69
1459 1890 1.508632 ATCGTTCAAAGGTCACACGG 58.491 50.000 0.00 0.00 0.00 4.94
1460 1891 3.314553 ACTATCGTTCAAAGGTCACACG 58.685 45.455 0.00 0.00 0.00 4.49
1461 1892 5.265407 GAACTATCGTTCAAAGGTCACAC 57.735 43.478 5.29 0.00 46.88 3.82
1472 1903 2.235402 TGTTGGGGAGGAACTATCGTTC 59.765 50.000 1.53 1.53 46.93 3.95
1473 1904 2.236395 CTGTTGGGGAGGAACTATCGTT 59.764 50.000 0.00 0.00 41.55 3.85
1474 1905 1.831736 CTGTTGGGGAGGAACTATCGT 59.168 52.381 0.00 0.00 41.55 3.73
1475 1906 1.831736 ACTGTTGGGGAGGAACTATCG 59.168 52.381 0.00 0.00 41.55 2.92
1476 1907 2.681097 GCACTGTTGGGGAGGAACTATC 60.681 54.545 0.00 0.00 41.55 2.08
1477 1908 1.282157 GCACTGTTGGGGAGGAACTAT 59.718 52.381 0.00 0.00 41.55 2.12
1478 1909 0.690762 GCACTGTTGGGGAGGAACTA 59.309 55.000 0.00 0.00 41.55 2.24
1480 1911 0.606673 GAGCACTGTTGGGGAGGAAC 60.607 60.000 0.00 0.00 0.00 3.62
1481 1912 1.761174 GAGCACTGTTGGGGAGGAA 59.239 57.895 0.00 0.00 0.00 3.36
1482 1913 2.224159 GGAGCACTGTTGGGGAGGA 61.224 63.158 0.00 0.00 0.00 3.71
1483 1914 2.227036 AGGAGCACTGTTGGGGAGG 61.227 63.158 0.00 0.00 0.00 4.30
1484 1915 1.002868 CAGGAGCACTGTTGGGGAG 60.003 63.158 0.65 0.00 42.42 4.30
1485 1916 3.160585 CAGGAGCACTGTTGGGGA 58.839 61.111 0.65 0.00 42.42 4.81
1495 1926 1.368950 GAGAGTGCACACAGGAGCA 59.631 57.895 21.04 0.00 38.32 4.26
1496 1927 1.735920 CGAGAGTGCACACAGGAGC 60.736 63.158 21.04 0.00 0.00 4.70
1497 1928 1.735920 GCGAGAGTGCACACAGGAG 60.736 63.158 21.04 6.17 34.15 3.69
1498 1929 1.748329 AAGCGAGAGTGCACACAGGA 61.748 55.000 21.04 0.00 37.31 3.86
1499 1930 0.882042 AAAGCGAGAGTGCACACAGG 60.882 55.000 21.04 9.77 37.31 4.00
1500 1931 0.940126 AAAAGCGAGAGTGCACACAG 59.060 50.000 21.04 12.11 37.31 3.66
1501 1932 0.657312 CAAAAGCGAGAGTGCACACA 59.343 50.000 21.04 0.00 37.31 3.72
1502 1933 0.040958 CCAAAAGCGAGAGTGCACAC 60.041 55.000 21.04 13.64 37.31 3.82
1503 1934 1.785041 GCCAAAAGCGAGAGTGCACA 61.785 55.000 21.04 0.00 37.31 4.57
1504 1935 1.081840 GCCAAAAGCGAGAGTGCAC 60.082 57.895 9.40 9.40 37.31 4.57
1505 1936 3.343972 GCCAAAAGCGAGAGTGCA 58.656 55.556 0.00 0.00 37.31 4.57
1521 1952 2.096909 CACTATATTTACGTGGCAGCGC 60.097 50.000 0.00 0.00 34.88 5.92
1522 1953 2.096909 GCACTATATTTACGTGGCAGCG 60.097 50.000 0.00 7.71 37.94 5.18
1523 1954 2.869801 TGCACTATATTTACGTGGCAGC 59.130 45.455 0.00 0.00 0.00 5.25
1524 1955 3.494626 CCTGCACTATATTTACGTGGCAG 59.505 47.826 0.00 0.00 35.05 4.85
1525 1956 3.462982 CCTGCACTATATTTACGTGGCA 58.537 45.455 0.00 0.00 0.00 4.92
1526 1957 2.223377 GCCTGCACTATATTTACGTGGC 59.777 50.000 0.00 0.00 0.00 5.01
1527 1958 2.475111 CGCCTGCACTATATTTACGTGG 59.525 50.000 0.00 0.00 0.00 4.94
1528 1959 3.120792 ACGCCTGCACTATATTTACGTG 58.879 45.455 0.00 0.00 0.00 4.49
1529 1960 3.378339 GACGCCTGCACTATATTTACGT 58.622 45.455 0.00 0.00 0.00 3.57
1530 1961 2.404029 CGACGCCTGCACTATATTTACG 59.596 50.000 0.00 0.00 0.00 3.18
1531 1962 2.729882 CCGACGCCTGCACTATATTTAC 59.270 50.000 0.00 0.00 0.00 2.01
1532 1963 2.864882 GCCGACGCCTGCACTATATTTA 60.865 50.000 0.00 0.00 0.00 1.40
1533 1964 1.865865 CCGACGCCTGCACTATATTT 58.134 50.000 0.00 0.00 0.00 1.40
1534 1965 0.600255 GCCGACGCCTGCACTATATT 60.600 55.000 0.00 0.00 0.00 1.28
1535 1966 1.006102 GCCGACGCCTGCACTATAT 60.006 57.895 0.00 0.00 0.00 0.86
1536 1967 2.415843 GCCGACGCCTGCACTATA 59.584 61.111 0.00 0.00 0.00 1.31
1559 1990 1.680105 CGGACATACACACGGCGAAC 61.680 60.000 16.62 0.00 0.00 3.95
1560 1991 1.444724 CGGACATACACACGGCGAA 60.445 57.895 16.62 0.00 0.00 4.70
1561 1992 2.179767 CGGACATACACACGGCGA 59.820 61.111 16.62 0.00 0.00 5.54
1562 1993 3.550992 GCGGACATACACACGGCG 61.551 66.667 4.80 4.80 0.00 6.46
1563 1994 3.550992 CGCGGACATACACACGGC 61.551 66.667 0.00 0.00 0.00 5.68
1564 1995 3.550992 GCGCGGACATACACACGG 61.551 66.667 8.83 0.00 0.00 4.94
1565 1996 2.009625 GAAGCGCGGACATACACACG 62.010 60.000 8.83 0.00 0.00 4.49
1566 1997 0.736325 AGAAGCGCGGACATACACAC 60.736 55.000 8.83 0.00 0.00 3.82
1567 1998 0.735978 CAGAAGCGCGGACATACACA 60.736 55.000 8.83 0.00 0.00 3.72
1568 1999 0.457853 TCAGAAGCGCGGACATACAC 60.458 55.000 8.83 0.00 0.00 2.90
1569 2000 0.179137 CTCAGAAGCGCGGACATACA 60.179 55.000 8.83 0.00 0.00 2.29
1570 2001 0.179134 ACTCAGAAGCGCGGACATAC 60.179 55.000 8.83 0.00 0.00 2.39
1571 2002 0.100682 GACTCAGAAGCGCGGACATA 59.899 55.000 8.83 0.00 0.00 2.29
1572 2003 1.153745 GACTCAGAAGCGCGGACAT 60.154 57.895 8.83 0.00 0.00 3.06
1573 2004 2.082629 TTGACTCAGAAGCGCGGACA 62.083 55.000 8.83 0.00 0.00 4.02
1574 2005 0.944311 TTTGACTCAGAAGCGCGGAC 60.944 55.000 8.83 0.00 0.00 4.79
1575 2006 0.249699 TTTTGACTCAGAAGCGCGGA 60.250 50.000 8.83 0.00 0.00 5.54
1576 2007 0.110644 GTTTTGACTCAGAAGCGCGG 60.111 55.000 8.83 0.00 0.00 6.46
1577 2008 0.110644 GGTTTTGACTCAGAAGCGCG 60.111 55.000 0.00 0.00 0.00 6.86
1578 2009 0.944386 TGGTTTTGACTCAGAAGCGC 59.056 50.000 0.00 0.00 30.31 5.92
1579 2010 1.069636 GCTGGTTTTGACTCAGAAGCG 60.070 52.381 6.93 4.03 30.31 4.68
1580 2011 1.268079 GGCTGGTTTTGACTCAGAAGC 59.732 52.381 4.87 4.87 0.00 3.86
1581 2012 1.532868 CGGCTGGTTTTGACTCAGAAG 59.467 52.381 0.00 0.00 0.00 2.85
1582 2013 1.140052 TCGGCTGGTTTTGACTCAGAA 59.860 47.619 0.00 0.00 0.00 3.02
1583 2014 0.756294 TCGGCTGGTTTTGACTCAGA 59.244 50.000 0.00 0.00 0.00 3.27
1584 2015 0.868406 GTCGGCTGGTTTTGACTCAG 59.132 55.000 0.00 0.00 0.00 3.35
1585 2016 0.468226 AGTCGGCTGGTTTTGACTCA 59.532 50.000 0.00 0.00 37.07 3.41
1586 2017 3.307379 AGTCGGCTGGTTTTGACTC 57.693 52.632 0.00 0.00 37.07 3.36
1587 2018 0.468226 TGAGTCGGCTGGTTTTGACT 59.532 50.000 0.00 0.00 43.95 3.41
1588 2019 0.868406 CTGAGTCGGCTGGTTTTGAC 59.132 55.000 0.00 0.00 0.00 3.18
1589 2020 0.468226 ACTGAGTCGGCTGGTTTTGA 59.532 50.000 0.00 0.00 0.00 2.69
1590 2021 1.002468 CAACTGAGTCGGCTGGTTTTG 60.002 52.381 0.00 0.00 0.00 2.44
1591 2022 1.308998 CAACTGAGTCGGCTGGTTTT 58.691 50.000 0.00 0.00 0.00 2.43
1592 2023 1.166531 GCAACTGAGTCGGCTGGTTT 61.167 55.000 0.00 0.00 0.00 3.27
1593 2024 1.598130 GCAACTGAGTCGGCTGGTT 60.598 57.895 0.00 0.00 0.00 3.67
1594 2025 2.031163 GCAACTGAGTCGGCTGGT 59.969 61.111 0.00 0.00 0.00 4.00
1595 2026 2.345244 AGCAACTGAGTCGGCTGG 59.655 61.111 10.40 0.00 34.83 4.85
1596 2027 3.559024 CAGCAACTGAGTCGGCTG 58.441 61.111 19.95 19.95 46.47 4.85
1597 2028 2.345244 CCAGCAACTGAGTCGGCT 59.655 61.111 5.97 5.97 36.99 5.52
1598 2029 2.743928 CCCAGCAACTGAGTCGGC 60.744 66.667 0.00 1.44 32.44 5.54
1599 2030 1.669115 CACCCAGCAACTGAGTCGG 60.669 63.158 0.00 0.00 32.44 4.79
1600 2031 0.249868 TTCACCCAGCAACTGAGTCG 60.250 55.000 0.00 0.00 32.44 4.18
1601 2032 1.070758 TCTTCACCCAGCAACTGAGTC 59.929 52.381 0.00 0.00 32.44 3.36
1602 2033 1.131638 TCTTCACCCAGCAACTGAGT 58.868 50.000 0.00 0.00 32.44 3.41
1603 2034 2.260844 TTCTTCACCCAGCAACTGAG 57.739 50.000 0.00 0.00 32.44 3.35
1604 2035 2.158623 ACATTCTTCACCCAGCAACTGA 60.159 45.455 0.00 0.00 32.44 3.41
1605 2036 2.233271 ACATTCTTCACCCAGCAACTG 58.767 47.619 0.00 0.00 0.00 3.16
1606 2037 2.624838 CAACATTCTTCACCCAGCAACT 59.375 45.455 0.00 0.00 0.00 3.16
1607 2038 2.863704 GCAACATTCTTCACCCAGCAAC 60.864 50.000 0.00 0.00 0.00 4.17
1608 2039 1.340889 GCAACATTCTTCACCCAGCAA 59.659 47.619 0.00 0.00 0.00 3.91
1609 2040 0.961019 GCAACATTCTTCACCCAGCA 59.039 50.000 0.00 0.00 0.00 4.41
1610 2041 0.961019 TGCAACATTCTTCACCCAGC 59.039 50.000 0.00 0.00 0.00 4.85
1611 2042 3.181493 GCTATGCAACATTCTTCACCCAG 60.181 47.826 0.00 0.00 0.00 4.45
1612 2043 2.754552 GCTATGCAACATTCTTCACCCA 59.245 45.455 0.00 0.00 0.00 4.51
1613 2044 2.099756 GGCTATGCAACATTCTTCACCC 59.900 50.000 0.00 0.00 0.00 4.61
1614 2045 3.019564 AGGCTATGCAACATTCTTCACC 58.980 45.455 0.00 0.00 0.00 4.02
1615 2046 4.260375 CGTAGGCTATGCAACATTCTTCAC 60.260 45.833 0.00 0.00 0.00 3.18
1616 2047 3.871006 CGTAGGCTATGCAACATTCTTCA 59.129 43.478 0.00 0.00 0.00 3.02
1617 2048 3.871594 ACGTAGGCTATGCAACATTCTTC 59.128 43.478 13.62 0.00 0.00 2.87
1618 2049 3.623060 CACGTAGGCTATGCAACATTCTT 59.377 43.478 13.62 0.00 0.00 2.52
1619 2050 3.118775 TCACGTAGGCTATGCAACATTCT 60.119 43.478 13.62 0.00 0.00 2.40
1620 2051 3.194861 TCACGTAGGCTATGCAACATTC 58.805 45.455 13.62 0.00 0.00 2.67
1621 2052 3.260475 TCACGTAGGCTATGCAACATT 57.740 42.857 13.62 0.00 0.00 2.71
1622 2053 2.979814 TCACGTAGGCTATGCAACAT 57.020 45.000 13.62 0.00 0.00 2.71
1623 2054 2.753055 TTCACGTAGGCTATGCAACA 57.247 45.000 13.62 0.00 0.00 3.33
1624 2055 4.094294 TGATTTTCACGTAGGCTATGCAAC 59.906 41.667 13.62 0.00 0.00 4.17
1625 2056 4.257731 TGATTTTCACGTAGGCTATGCAA 58.742 39.130 13.62 4.33 0.00 4.08
1626 2057 3.867857 TGATTTTCACGTAGGCTATGCA 58.132 40.909 13.62 0.00 0.00 3.96
1627 2058 4.875544 TTGATTTTCACGTAGGCTATGC 57.124 40.909 13.62 0.00 0.00 3.14
1628 2059 6.238211 CCTCTTTGATTTTCACGTAGGCTATG 60.238 42.308 12.18 12.18 0.00 2.23
1629 2060 5.817816 CCTCTTTGATTTTCACGTAGGCTAT 59.182 40.000 0.00 0.00 0.00 2.97
1630 2061 5.046878 TCCTCTTTGATTTTCACGTAGGCTA 60.047 40.000 0.00 0.00 0.00 3.93
1631 2062 4.003648 CCTCTTTGATTTTCACGTAGGCT 58.996 43.478 0.00 0.00 0.00 4.58
1632 2063 4.000988 TCCTCTTTGATTTTCACGTAGGC 58.999 43.478 0.00 0.00 0.00 3.93
1633 2064 5.479306 TCTCCTCTTTGATTTTCACGTAGG 58.521 41.667 0.00 0.00 0.00 3.18
1634 2065 5.062809 GCTCTCCTCTTTGATTTTCACGTAG 59.937 44.000 0.00 0.00 0.00 3.51
1635 2066 4.929808 GCTCTCCTCTTTGATTTTCACGTA 59.070 41.667 0.00 0.00 0.00 3.57
1636 2067 3.748568 GCTCTCCTCTTTGATTTTCACGT 59.251 43.478 0.00 0.00 0.00 4.49
1637 2068 3.999663 AGCTCTCCTCTTTGATTTTCACG 59.000 43.478 0.00 0.00 0.00 4.35
1638 2069 4.999950 TGAGCTCTCCTCTTTGATTTTCAC 59.000 41.667 16.19 0.00 41.35 3.18
1639 2070 5.233083 TGAGCTCTCCTCTTTGATTTTCA 57.767 39.130 16.19 0.00 41.35 2.69
1640 2071 4.094739 GCTGAGCTCTCCTCTTTGATTTTC 59.905 45.833 16.19 0.00 41.35 2.29
1641 2072 4.009002 GCTGAGCTCTCCTCTTTGATTTT 58.991 43.478 16.19 0.00 41.35 1.82
1642 2073 3.608796 GCTGAGCTCTCCTCTTTGATTT 58.391 45.455 16.19 0.00 41.35 2.17
1643 2074 2.093021 GGCTGAGCTCTCCTCTTTGATT 60.093 50.000 16.19 0.00 41.35 2.57
1644 2075 1.485895 GGCTGAGCTCTCCTCTTTGAT 59.514 52.381 16.19 0.00 41.35 2.57
1645 2076 0.901124 GGCTGAGCTCTCCTCTTTGA 59.099 55.000 16.19 0.00 41.35 2.69
1646 2077 0.903942 AGGCTGAGCTCTCCTCTTTG 59.096 55.000 16.19 0.00 41.35 2.77
1647 2078 2.541233 TAGGCTGAGCTCTCCTCTTT 57.459 50.000 24.79 9.74 41.35 2.52
1648 2079 2.773525 ATAGGCTGAGCTCTCCTCTT 57.226 50.000 24.79 14.67 41.35 2.85
1649 2080 3.893753 TTATAGGCTGAGCTCTCCTCT 57.106 47.619 24.79 19.32 41.35 3.69
1650 2081 4.081697 GGATTTATAGGCTGAGCTCTCCTC 60.082 50.000 24.79 13.50 41.15 3.71
1651 2082 3.837731 GGATTTATAGGCTGAGCTCTCCT 59.162 47.826 24.57 24.57 0.00 3.69
1652 2083 3.580458 TGGATTTATAGGCTGAGCTCTCC 59.420 47.826 16.19 15.56 0.00 3.71
1653 2084 4.881019 TGGATTTATAGGCTGAGCTCTC 57.119 45.455 16.19 6.64 0.00 3.20
1654 2085 5.558818 CAATGGATTTATAGGCTGAGCTCT 58.441 41.667 16.19 2.30 0.00 4.09
1655 2086 4.155644 GCAATGGATTTATAGGCTGAGCTC 59.844 45.833 6.82 6.82 0.00 4.09
1656 2087 4.077822 GCAATGGATTTATAGGCTGAGCT 58.922 43.478 3.72 0.00 0.00 4.09
1657 2088 3.822735 TGCAATGGATTTATAGGCTGAGC 59.177 43.478 0.00 0.00 0.00 4.26
1658 2089 6.585695 ATTGCAATGGATTTATAGGCTGAG 57.414 37.500 12.09 0.00 0.00 3.35
1659 2090 6.149308 CGTATTGCAATGGATTTATAGGCTGA 59.851 38.462 22.27 0.00 0.00 4.26
1660 2091 6.149308 TCGTATTGCAATGGATTTATAGGCTG 59.851 38.462 22.27 0.00 0.00 4.85
1661 2092 6.237901 TCGTATTGCAATGGATTTATAGGCT 58.762 36.000 22.27 0.00 0.00 4.58
1662 2093 6.371548 TCTCGTATTGCAATGGATTTATAGGC 59.628 38.462 22.27 0.00 0.00 3.93
1663 2094 7.819415 TCTCTCGTATTGCAATGGATTTATAGG 59.181 37.037 22.27 5.17 0.00 2.57
1664 2095 8.651588 GTCTCTCGTATTGCAATGGATTTATAG 58.348 37.037 22.27 8.84 0.00 1.31
1665 2096 7.328493 CGTCTCTCGTATTGCAATGGATTTATA 59.672 37.037 22.27 0.00 34.52 0.98
1666 2097 6.146184 CGTCTCTCGTATTGCAATGGATTTAT 59.854 38.462 22.27 0.00 34.52 1.40
1667 2098 5.462068 CGTCTCTCGTATTGCAATGGATTTA 59.538 40.000 22.27 0.00 34.52 1.40
1668 2099 4.271049 CGTCTCTCGTATTGCAATGGATTT 59.729 41.667 22.27 0.00 34.52 2.17
1669 2100 3.804325 CGTCTCTCGTATTGCAATGGATT 59.196 43.478 22.27 0.00 34.52 3.01
1670 2101 3.384668 CGTCTCTCGTATTGCAATGGAT 58.615 45.455 22.27 0.00 34.52 3.41
1671 2102 2.809446 CGTCTCTCGTATTGCAATGGA 58.191 47.619 22.27 16.68 34.52 3.41
1683 2114 1.299850 TGGTTGCACACGTCTCTCG 60.300 57.895 0.00 0.00 46.00 4.04
1684 2115 0.529773 TGTGGTTGCACACGTCTCTC 60.530 55.000 3.32 0.00 44.21 3.20
1685 2116 0.810031 GTGTGGTTGCACACGTCTCT 60.810 55.000 0.00 0.00 44.66 3.10
1686 2117 1.641677 GTGTGGTTGCACACGTCTC 59.358 57.895 0.00 0.00 44.66 3.36
1687 2118 3.808036 GTGTGGTTGCACACGTCT 58.192 55.556 0.00 0.00 44.66 4.18
1692 2123 2.751837 TTGCGGTGTGGTTGCACA 60.752 55.556 0.00 0.00 40.89 4.57
1693 2124 2.026014 CTTGCGGTGTGGTTGCAC 59.974 61.111 0.00 0.00 38.55 4.57
1694 2125 2.610532 TACCTTGCGGTGTGGTTGCA 62.611 55.000 0.00 0.00 45.18 4.08
1695 2126 1.241315 ATACCTTGCGGTGTGGTTGC 61.241 55.000 0.00 0.00 45.18 4.17
1696 2127 2.102070 TATACCTTGCGGTGTGGTTG 57.898 50.000 0.00 0.00 45.18 3.77
1697 2128 2.504175 AGATATACCTTGCGGTGTGGTT 59.496 45.455 0.00 0.00 45.18 3.67
1698 2129 2.116238 AGATATACCTTGCGGTGTGGT 58.884 47.619 0.00 0.00 45.18 4.16
1699 2130 2.483876 CAGATATACCTTGCGGTGTGG 58.516 52.381 0.00 0.00 45.18 4.17
1700 2131 1.867233 GCAGATATACCTTGCGGTGTG 59.133 52.381 0.00 0.00 45.18 3.82
1701 2132 1.484653 TGCAGATATACCTTGCGGTGT 59.515 47.619 0.00 0.00 45.18 4.16
1702 2133 2.138320 CTGCAGATATACCTTGCGGTG 58.862 52.381 8.42 0.00 45.18 4.94
1703 2134 5.912184 CTGCTGCAGATATACCTTGCGGT 62.912 52.174 24.88 0.00 39.48 5.68
1704 2135 1.151668 GCTGCAGATATACCTTGCGG 58.848 55.000 20.43 8.63 35.21 5.69
1705 2136 1.797046 CTGCTGCAGATATACCTTGCG 59.203 52.381 24.88 0.00 32.44 4.85
1706 2137 2.843701 ACTGCTGCAGATATACCTTGC 58.156 47.619 34.28 0.00 35.18 4.01
1707 2138 5.207110 ACTACTGCTGCAGATATACCTTG 57.793 43.478 34.28 14.09 35.18 3.61
1708 2139 5.478679 CCTACTACTGCTGCAGATATACCTT 59.521 44.000 34.28 13.00 35.18 3.50
1709 2140 5.013547 CCTACTACTGCTGCAGATATACCT 58.986 45.833 34.28 13.74 35.18 3.08
1710 2141 5.010933 TCCTACTACTGCTGCAGATATACC 58.989 45.833 34.28 0.00 35.18 2.73
1711 2142 6.016192 TGTTCCTACTACTGCTGCAGATATAC 60.016 42.308 34.28 18.96 35.18 1.47
1719 2150 2.288825 TGTGTGTTCCTACTACTGCTGC 60.289 50.000 0.00 0.00 0.00 5.25
1720 2151 3.660501 TGTGTGTTCCTACTACTGCTG 57.339 47.619 0.00 0.00 0.00 4.41
1725 2156 4.865365 GCTCATCTTGTGTGTTCCTACTAC 59.135 45.833 0.00 0.00 0.00 2.73
1759 2191 1.515521 CCACCAACTCCGGCAAAGAC 61.516 60.000 0.00 0.00 0.00 3.01
1762 2194 2.203422 CCCACCAACTCCGGCAAA 60.203 61.111 0.00 0.00 0.00 3.68
1798 2230 1.098050 GGCTGTTGATGGTCATCACC 58.902 55.000 12.62 7.27 46.49 4.02
1825 2257 1.599047 CACCTCGGCCATCAAGTCT 59.401 57.895 2.24 0.00 0.00 3.24
1830 2262 3.785859 GGAGCACCTCGGCCATCA 61.786 66.667 2.24 0.00 0.00 3.07
1835 2267 1.817099 CAATCTGGAGCACCTCGGC 60.817 63.158 0.71 0.00 37.04 5.54
1870 2302 2.507324 GTCGAGTCGAAGCTGGGC 60.507 66.667 18.42 0.00 37.72 5.36
1873 2305 1.082038 ACGTGTCGAGTCGAAGCTG 60.082 57.895 18.42 10.04 37.72 4.24
1874 2306 1.082038 CACGTGTCGAGTCGAAGCT 60.082 57.895 18.42 0.00 37.72 3.74
1876 2308 2.697495 GACACGTGTCGAGTCGAAG 58.303 57.895 31.03 13.93 37.65 3.79
1891 2323 0.387929 GGTCGAGGAACACACAGACA 59.612 55.000 0.00 0.00 0.00 3.41
1911 2343 2.224305 ACAAGGCTAAGCTTGTCTCGTT 60.224 45.455 9.86 0.68 39.28 3.85
1923 2355 1.228124 ACGGCTGCAACAAGGCTAA 60.228 52.632 0.50 0.00 40.47 3.09
1925 2357 2.980233 GACGGCTGCAACAAGGCT 60.980 61.111 0.50 0.00 40.47 4.58
1932 2364 4.680237 CGACAGGGACGGCTGCAA 62.680 66.667 0.50 0.00 0.00 4.08
1958 2390 8.547967 TTCCTTAGAAAAACACAGCTATGTAG 57.452 34.615 0.00 0.00 37.65 2.74
1967 2399 6.206634 CCATGTAGCTTCCTTAGAAAAACACA 59.793 38.462 0.00 0.00 0.00 3.72
1969 2401 6.303839 ACCATGTAGCTTCCTTAGAAAAACA 58.696 36.000 0.00 0.00 0.00 2.83
1978 2410 5.763876 AAACTCTACCATGTAGCTTCCTT 57.236 39.130 0.00 0.00 0.00 3.36
2000 2432 6.296894 CCCCGTCTCTAAGGAGGTTATAGATA 60.297 46.154 0.00 0.00 39.86 1.98
2001 2433 5.516945 CCCCGTCTCTAAGGAGGTTATAGAT 60.517 48.000 0.00 0.00 39.86 1.98
2002 2434 4.202545 CCCCGTCTCTAAGGAGGTTATAGA 60.203 50.000 0.00 0.00 39.86 1.98
2003 2435 4.080687 CCCCGTCTCTAAGGAGGTTATAG 58.919 52.174 0.00 0.00 39.86 1.31
2007 2441 0.412640 ACCCCGTCTCTAAGGAGGTT 59.587 55.000 0.00 0.00 39.86 3.50
2009 2443 1.043673 CCACCCCGTCTCTAAGGAGG 61.044 65.000 0.00 0.00 39.86 4.30
2019 2453 2.476821 CATATCGTTAACCACCCCGTC 58.523 52.381 0.00 0.00 0.00 4.79
2026 2460 1.488812 AGCAGGGCATATCGTTAACCA 59.511 47.619 0.00 0.00 0.00 3.67
2031 2465 4.885426 CCAGCAGGGCATATCGTT 57.115 55.556 0.00 0.00 0.00 3.85
2068 2703 4.083324 CCATAAGCACAGAAAACGACACAT 60.083 41.667 0.00 0.00 0.00 3.21
2115 2750 4.216411 TGCTGGACCCTACAACTTATTC 57.784 45.455 0.00 0.00 0.00 1.75
2123 2758 3.521531 TGAATTGTATGCTGGACCCTACA 59.478 43.478 0.00 0.00 0.00 2.74
2124 2759 4.150897 TGAATTGTATGCTGGACCCTAC 57.849 45.455 0.00 0.00 0.00 3.18
2241 2927 5.413833 GCTTTCGTATGATGATCATTCCCAT 59.586 40.000 13.81 11.14 38.26 4.00
2244 2930 5.929697 TGCTTTCGTATGATGATCATTCC 57.070 39.130 13.81 4.18 38.26 3.01
2248 2938 6.057533 AGGAAATGCTTTCGTATGATGATCA 58.942 36.000 0.00 0.00 40.57 2.92
2298 3006 3.997021 GGTGCTCTATACCATATGTGTGC 59.003 47.826 1.24 0.41 38.12 4.57
2333 3041 2.696409 ATCAGATGGCGAGCGCTCTG 62.696 60.000 32.88 25.91 41.70 3.35
2334 3042 2.419057 GATCAGATGGCGAGCGCTCT 62.419 60.000 32.88 16.28 41.60 4.09
2342 3050 0.250038 AACATCCGGATCAGATGGCG 60.250 55.000 15.88 2.99 44.45 5.69
2375 3084 9.653287 CCACATCTCACCGTAATATATTACAAT 57.347 33.333 27.22 15.96 42.02 2.71
2388 3097 2.426522 CATCAAACCACATCTCACCGT 58.573 47.619 0.00 0.00 0.00 4.83
2390 3099 3.071874 TCCATCAAACCACATCTCACC 57.928 47.619 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.