Multiple sequence alignment - TraesCS1D01G012200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G012200 chr1D 100.000 3399 0 0 1 3399 6464291 6460893 0.000000e+00 6277.0
1 TraesCS1D01G012200 chr7B 92.742 2659 126 29 342 2964 452214068 452216695 0.000000e+00 3779.0
2 TraesCS1D01G012200 chr1A 87.674 2369 211 39 399 2736 7779408 7777090 0.000000e+00 2682.0
3 TraesCS1D01G012200 chr1A 86.171 1815 204 22 1170 2950 7115259 7113458 0.000000e+00 1917.0
4 TraesCS1D01G012200 chr1A 89.044 1077 104 7 1504 2570 7649095 7650167 0.000000e+00 1323.0
5 TraesCS1D01G012200 chr1A 90.138 507 34 5 2462 2964 7777081 7776587 0.000000e+00 645.0
6 TraesCS1D01G012200 chr1A 100.000 37 0 0 729 765 7779047 7779011 6.090000e-08 69.4
7 TraesCS1D01G012200 chr1A 87.755 49 6 0 572 620 132107506 132107554 1.320000e-04 58.4
8 TraesCS1D01G012200 chr2D 85.792 183 26 0 1157 1339 533668527 533668709 9.620000e-46 195.0
9 TraesCS1D01G012200 chr2D 82.488 217 32 6 1146 1358 533165346 533165560 5.790000e-43 185.0
10 TraesCS1D01G012200 chr2D 80.567 247 39 8 1099 1339 533251726 533251969 7.490000e-42 182.0
11 TraesCS1D01G012200 chr4B 77.844 334 58 10 1161 1492 654202013 654202332 3.460000e-45 193.0
12 TraesCS1D01G012200 chr7D 85.635 181 25 1 1160 1340 10963598 10963419 4.480000e-44 189.0
13 TraesCS1D01G012200 chr5A 85.465 172 25 0 1169 1340 691821077 691821248 2.690000e-41 180.0
14 TraesCS1D01G012200 chr2A 82.741 197 31 3 1146 1339 677546197 677546393 4.510000e-39 172.0
15 TraesCS1D01G012200 chr6A 100.000 28 0 0 594 621 571909120 571909147 6.000000e-03 52.8
16 TraesCS1D01G012200 chr5B 96.875 32 0 1 592 622 65720013 65719982 6.000000e-03 52.8
17 TraesCS1D01G012200 chr3A 100.000 28 0 0 579 606 699860749 699860722 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G012200 chr1D 6460893 6464291 3398 True 6277.000000 6277 100.000 1 3399 1 chr1D.!!$R1 3398
1 TraesCS1D01G012200 chr7B 452214068 452216695 2627 False 3779.000000 3779 92.742 342 2964 1 chr7B.!!$F1 2622
2 TraesCS1D01G012200 chr1A 7113458 7115259 1801 True 1917.000000 1917 86.171 1170 2950 1 chr1A.!!$R1 1780
3 TraesCS1D01G012200 chr1A 7649095 7650167 1072 False 1323.000000 1323 89.044 1504 2570 1 chr1A.!!$F1 1066
4 TraesCS1D01G012200 chr1A 7776587 7779408 2821 True 1132.133333 2682 92.604 399 2964 3 chr1A.!!$R2 2565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 425 0.107703 TGTGGGCCATCATCGAACTC 60.108 55.0 10.70 0.0 0.0 3.01 F
1718 1810 0.679002 TCTACTCGTCCAGAACCGGG 60.679 60.0 6.32 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1848 1943 0.466189 AAGGCCACCAACACAGTCTG 60.466 55.0 5.01 0.0 0.0 3.51 R
2866 3261 0.106217 AACCTGTCAAACCCCCTGTG 60.106 55.0 0.00 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.625828 AGATAACACCTAAAAGGGAAATTCG 57.374 36.000 0.00 0.00 40.58 3.34
26 27 7.399634 AGATAACACCTAAAAGGGAAATTCGA 58.600 34.615 0.00 0.00 40.58 3.71
27 28 5.700722 AACACCTAAAAGGGAAATTCGAC 57.299 39.130 0.00 0.00 40.58 4.20
28 29 4.981812 ACACCTAAAAGGGAAATTCGACT 58.018 39.130 0.00 0.00 40.58 4.18
29 30 4.760204 ACACCTAAAAGGGAAATTCGACTG 59.240 41.667 0.00 0.00 40.58 3.51
30 31 4.156008 CACCTAAAAGGGAAATTCGACTGG 59.844 45.833 0.00 0.00 40.58 4.00
31 32 3.694566 CCTAAAAGGGAAATTCGACTGGG 59.305 47.826 0.00 0.00 0.00 4.45
32 33 3.518992 AAAAGGGAAATTCGACTGGGA 57.481 42.857 0.00 0.00 0.00 4.37
33 34 3.518992 AAAGGGAAATTCGACTGGGAA 57.481 42.857 0.00 0.00 0.00 3.97
34 35 3.518992 AAGGGAAATTCGACTGGGAAA 57.481 42.857 0.00 0.00 0.00 3.13
35 36 3.073274 AGGGAAATTCGACTGGGAAAG 57.927 47.619 0.00 0.00 0.00 2.62
36 37 2.642807 AGGGAAATTCGACTGGGAAAGA 59.357 45.455 0.00 0.00 0.00 2.52
37 38 3.010420 GGGAAATTCGACTGGGAAAGAG 58.990 50.000 0.00 0.00 0.00 2.85
38 39 3.559384 GGGAAATTCGACTGGGAAAGAGT 60.559 47.826 0.00 0.00 0.00 3.24
39 40 3.685272 GGAAATTCGACTGGGAAAGAGTC 59.315 47.826 0.00 0.00 37.14 3.36
51 52 4.893829 GGAAAGAGTCCAAGTTAGACCT 57.106 45.455 0.00 0.00 46.97 3.85
52 53 4.823157 GGAAAGAGTCCAAGTTAGACCTC 58.177 47.826 0.00 0.00 46.97 3.85
53 54 4.528987 GGAAAGAGTCCAAGTTAGACCTCT 59.471 45.833 0.00 0.00 46.97 3.69
54 55 5.012251 GGAAAGAGTCCAAGTTAGACCTCTT 59.988 44.000 0.00 4.60 46.97 2.85
55 56 6.464607 GGAAAGAGTCCAAGTTAGACCTCTTT 60.465 42.308 18.83 18.83 46.97 2.52
56 57 5.731957 AGAGTCCAAGTTAGACCTCTTTC 57.268 43.478 0.00 0.00 34.67 2.62
57 58 4.528987 AGAGTCCAAGTTAGACCTCTTTCC 59.471 45.833 0.00 0.00 34.67 3.13
58 59 3.583526 AGTCCAAGTTAGACCTCTTTCCC 59.416 47.826 0.00 0.00 34.67 3.97
59 60 3.583526 GTCCAAGTTAGACCTCTTTCCCT 59.416 47.826 0.00 0.00 0.00 4.20
60 61 4.041815 GTCCAAGTTAGACCTCTTTCCCTT 59.958 45.833 0.00 0.00 0.00 3.95
61 62 4.663592 TCCAAGTTAGACCTCTTTCCCTTT 59.336 41.667 0.00 0.00 0.00 3.11
62 63 5.004448 CCAAGTTAGACCTCTTTCCCTTTC 58.996 45.833 0.00 0.00 0.00 2.62
63 64 5.456186 CCAAGTTAGACCTCTTTCCCTTTCA 60.456 44.000 0.00 0.00 0.00 2.69
64 65 5.906772 AGTTAGACCTCTTTCCCTTTCAA 57.093 39.130 0.00 0.00 0.00 2.69
65 66 6.262056 AGTTAGACCTCTTTCCCTTTCAAA 57.738 37.500 0.00 0.00 0.00 2.69
66 67 6.669631 AGTTAGACCTCTTTCCCTTTCAAAA 58.330 36.000 0.00 0.00 0.00 2.44
67 68 7.298374 AGTTAGACCTCTTTCCCTTTCAAAAT 58.702 34.615 0.00 0.00 0.00 1.82
68 69 7.785028 AGTTAGACCTCTTTCCCTTTCAAAATT 59.215 33.333 0.00 0.00 0.00 1.82
69 70 8.421784 GTTAGACCTCTTTCCCTTTCAAAATTT 58.578 33.333 0.00 0.00 0.00 1.82
70 71 9.649316 TTAGACCTCTTTCCCTTTCAAAATTTA 57.351 29.630 0.00 0.00 0.00 1.40
71 72 8.183104 AGACCTCTTTCCCTTTCAAAATTTAG 57.817 34.615 0.00 0.00 0.00 1.85
72 73 8.004801 AGACCTCTTTCCCTTTCAAAATTTAGA 58.995 33.333 0.00 0.00 0.00 2.10
73 74 8.183104 ACCTCTTTCCCTTTCAAAATTTAGAG 57.817 34.615 0.00 0.00 0.00 2.43
74 75 7.093354 CCTCTTTCCCTTTCAAAATTTAGAGC 58.907 38.462 0.00 0.00 0.00 4.09
75 76 7.255942 CCTCTTTCCCTTTCAAAATTTAGAGCA 60.256 37.037 0.00 0.00 0.00 4.26
76 77 8.193953 TCTTTCCCTTTCAAAATTTAGAGCAT 57.806 30.769 0.00 0.00 0.00 3.79
77 78 9.308000 TCTTTCCCTTTCAAAATTTAGAGCATA 57.692 29.630 0.00 0.00 0.00 3.14
96 97 9.415544 AGAGCATATTTTCACTGTTCAAAATTC 57.584 29.630 10.79 5.08 34.68 2.17
97 98 9.195411 GAGCATATTTTCACTGTTCAAAATTCA 57.805 29.630 10.79 0.00 34.68 2.57
98 99 9.545105 AGCATATTTTCACTGTTCAAAATTCAA 57.455 25.926 10.79 0.00 34.68 2.69
99 100 9.801714 GCATATTTTCACTGTTCAAAATTCAAG 57.198 29.630 10.79 3.62 34.68 3.02
107 108 9.145865 TCACTGTTCAAAATTCAAGTTTTTACC 57.854 29.630 0.00 0.00 0.00 2.85
108 109 8.930760 CACTGTTCAAAATTCAAGTTTTTACCA 58.069 29.630 0.00 0.00 0.00 3.25
109 110 9.150348 ACTGTTCAAAATTCAAGTTTTTACCAG 57.850 29.630 0.00 0.00 0.00 4.00
110 111 7.969314 TGTTCAAAATTCAAGTTTTTACCAGC 58.031 30.769 0.00 0.00 0.00 4.85
111 112 7.604164 TGTTCAAAATTCAAGTTTTTACCAGCA 59.396 29.630 0.00 0.00 0.00 4.41
112 113 8.447053 GTTCAAAATTCAAGTTTTTACCAGCAA 58.553 29.630 0.00 0.00 0.00 3.91
113 114 8.729805 TCAAAATTCAAGTTTTTACCAGCAAT 57.270 26.923 0.00 0.00 0.00 3.56
114 115 9.171877 TCAAAATTCAAGTTTTTACCAGCAATT 57.828 25.926 0.00 0.00 0.00 2.32
120 121 9.474920 TTCAAGTTTTTACCAGCAATTAATCTG 57.525 29.630 0.00 0.00 0.00 2.90
121 122 8.855110 TCAAGTTTTTACCAGCAATTAATCTGA 58.145 29.630 5.87 0.00 32.26 3.27
122 123 9.643693 CAAGTTTTTACCAGCAATTAATCTGAT 57.356 29.630 5.87 0.00 32.26 2.90
163 164 9.935241 ATGTTACACAAAATTGGTAATATTGCA 57.065 25.926 5.87 0.00 30.03 4.08
164 165 9.197694 TGTTACACAAAATTGGTAATATTGCAC 57.802 29.630 5.87 0.00 31.46 4.57
165 166 9.418045 GTTACACAAAATTGGTAATATTGCACT 57.582 29.630 5.87 0.00 31.46 4.40
166 167 9.632807 TTACACAAAATTGGTAATATTGCACTC 57.367 29.630 5.87 0.00 0.00 3.51
167 168 7.096551 ACACAAAATTGGTAATATTGCACTCC 58.903 34.615 5.87 0.00 0.00 3.85
168 169 7.039082 ACACAAAATTGGTAATATTGCACTCCT 60.039 33.333 5.87 0.00 0.00 3.69
169 170 7.276218 CACAAAATTGGTAATATTGCACTCCTG 59.724 37.037 5.87 0.00 0.00 3.86
170 171 7.039082 ACAAAATTGGTAATATTGCACTCCTGT 60.039 33.333 5.87 0.00 0.00 4.00
171 172 6.699575 AATTGGTAATATTGCACTCCTGTC 57.300 37.500 5.87 0.00 0.00 3.51
172 173 4.150897 TGGTAATATTGCACTCCTGTCC 57.849 45.455 5.87 0.00 0.00 4.02
173 174 3.131396 GGTAATATTGCACTCCTGTCCG 58.869 50.000 5.87 0.00 0.00 4.79
174 175 2.332063 AATATTGCACTCCTGTCCGG 57.668 50.000 0.00 0.00 0.00 5.14
175 176 0.179045 ATATTGCACTCCTGTCCGGC 60.179 55.000 0.00 0.00 0.00 6.13
176 177 2.572095 TATTGCACTCCTGTCCGGCG 62.572 60.000 0.00 0.00 0.00 6.46
179 180 4.742201 CACTCCTGTCCGGCGGTG 62.742 72.222 27.32 16.59 32.82 4.94
184 185 3.423154 CTGTCCGGCGGTGCTTTC 61.423 66.667 27.32 10.80 0.00 2.62
185 186 3.883744 CTGTCCGGCGGTGCTTTCT 62.884 63.158 27.32 0.00 0.00 2.52
186 187 2.668550 GTCCGGCGGTGCTTTCTT 60.669 61.111 27.32 0.00 0.00 2.52
187 188 1.375013 GTCCGGCGGTGCTTTCTTA 60.375 57.895 27.32 0.00 0.00 2.10
188 189 1.375013 TCCGGCGGTGCTTTCTTAC 60.375 57.895 27.32 0.00 0.00 2.34
189 190 1.669760 CCGGCGGTGCTTTCTTACA 60.670 57.895 19.97 0.00 0.00 2.41
190 191 1.231958 CCGGCGGTGCTTTCTTACAA 61.232 55.000 19.97 0.00 0.00 2.41
191 192 0.165944 CGGCGGTGCTTTCTTACAAG 59.834 55.000 0.00 0.00 0.00 3.16
192 193 1.235724 GGCGGTGCTTTCTTACAAGT 58.764 50.000 0.00 0.00 0.00 3.16
193 194 1.607148 GGCGGTGCTTTCTTACAAGTT 59.393 47.619 0.00 0.00 0.00 2.66
194 195 2.809696 GGCGGTGCTTTCTTACAAGTTA 59.190 45.455 0.00 0.00 0.00 2.24
195 196 3.439129 GGCGGTGCTTTCTTACAAGTTAT 59.561 43.478 0.00 0.00 0.00 1.89
196 197 4.632688 GGCGGTGCTTTCTTACAAGTTATA 59.367 41.667 0.00 0.00 0.00 0.98
197 198 5.122711 GGCGGTGCTTTCTTACAAGTTATAA 59.877 40.000 0.00 0.00 0.00 0.98
198 199 6.019762 GCGGTGCTTTCTTACAAGTTATAAC 58.980 40.000 7.57 7.57 0.00 1.89
199 200 6.128363 GCGGTGCTTTCTTACAAGTTATAACT 60.128 38.462 12.50 12.50 42.04 2.24
200 201 7.063780 GCGGTGCTTTCTTACAAGTTATAACTA 59.936 37.037 18.31 0.39 38.57 2.24
201 202 8.378421 CGGTGCTTTCTTACAAGTTATAACTAC 58.622 37.037 18.31 8.12 38.57 2.73
202 203 9.433153 GGTGCTTTCTTACAAGTTATAACTACT 57.567 33.333 18.31 8.99 38.57 2.57
258 259 8.938047 GAAATTACAGCCAAATTTCACAATTG 57.062 30.769 17.37 3.24 45.92 2.32
259 260 8.674263 AAATTACAGCCAAATTTCACAATTGA 57.326 26.923 13.59 0.00 32.43 2.57
260 261 8.674263 AATTACAGCCAAATTTCACAATTGAA 57.326 26.923 13.59 0.00 40.14 2.69
261 262 5.989551 ACAGCCAAATTTCACAATTGAAC 57.010 34.783 13.59 0.00 41.64 3.18
262 263 5.426504 ACAGCCAAATTTCACAATTGAACA 58.573 33.333 13.59 0.00 41.64 3.18
263 264 5.524646 ACAGCCAAATTTCACAATTGAACAG 59.475 36.000 13.59 0.00 41.64 3.16
264 265 5.524646 CAGCCAAATTTCACAATTGAACAGT 59.475 36.000 13.59 0.00 41.64 3.55
265 266 5.754890 AGCCAAATTTCACAATTGAACAGTC 59.245 36.000 13.59 0.00 41.64 3.51
266 267 5.050159 GCCAAATTTCACAATTGAACAGTCC 60.050 40.000 13.59 0.00 41.64 3.85
267 268 6.047870 CCAAATTTCACAATTGAACAGTCCA 58.952 36.000 13.59 0.00 41.64 4.02
268 269 6.538021 CCAAATTTCACAATTGAACAGTCCAA 59.462 34.615 13.59 0.00 41.64 3.53
269 270 7.065563 CCAAATTTCACAATTGAACAGTCCAAA 59.934 33.333 13.59 0.00 41.64 3.28
270 271 8.614346 CAAATTTCACAATTGAACAGTCCAAAT 58.386 29.630 13.59 2.04 41.64 2.32
271 272 8.735692 AATTTCACAATTGAACAGTCCAAATT 57.264 26.923 13.59 7.31 41.64 1.82
272 273 7.769272 TTTCACAATTGAACAGTCCAAATTC 57.231 32.000 13.59 0.00 41.64 2.17
273 274 6.462552 TCACAATTGAACAGTCCAAATTCA 57.537 33.333 13.59 0.00 0.00 2.57
274 275 6.506147 TCACAATTGAACAGTCCAAATTCAG 58.494 36.000 13.59 0.00 34.04 3.02
275 276 6.320926 TCACAATTGAACAGTCCAAATTCAGA 59.679 34.615 13.59 0.00 34.04 3.27
276 277 6.979817 CACAATTGAACAGTCCAAATTCAGAA 59.020 34.615 13.59 0.00 34.04 3.02
277 278 7.654520 CACAATTGAACAGTCCAAATTCAGAAT 59.345 33.333 13.59 0.00 34.04 2.40
278 279 8.859090 ACAATTGAACAGTCCAAATTCAGAATA 58.141 29.630 13.59 0.00 34.04 1.75
279 280 9.132521 CAATTGAACAGTCCAAATTCAGAATAC 57.867 33.333 0.00 0.00 34.04 1.89
280 281 7.815840 TTGAACAGTCCAAATTCAGAATACA 57.184 32.000 0.00 0.00 34.04 2.29
281 282 8.408043 TTGAACAGTCCAAATTCAGAATACAT 57.592 30.769 0.00 0.00 34.04 2.29
282 283 8.408043 TGAACAGTCCAAATTCAGAATACATT 57.592 30.769 0.00 0.00 0.00 2.71
283 284 8.859090 TGAACAGTCCAAATTCAGAATACATTT 58.141 29.630 0.00 0.00 0.00 2.32
284 285 9.132521 GAACAGTCCAAATTCAGAATACATTTG 57.867 33.333 0.00 0.00 37.55 2.32
285 286 8.408043 ACAGTCCAAATTCAGAATACATTTGA 57.592 30.769 8.08 0.00 39.34 2.69
286 287 8.859090 ACAGTCCAAATTCAGAATACATTTGAA 58.141 29.630 8.08 0.00 39.34 2.69
287 288 9.695526 CAGTCCAAATTCAGAATACATTTGAAA 57.304 29.630 8.08 0.00 39.34 2.69
306 307 1.589803 AAAACGGAGGGTTCTCAACG 58.410 50.000 0.00 0.00 41.69 4.10
307 308 0.250166 AAACGGAGGGTTCTCAACGG 60.250 55.000 0.00 0.00 41.69 4.44
308 309 1.405272 AACGGAGGGTTCTCAACGGT 61.405 55.000 0.00 0.00 41.69 4.83
309 310 1.370064 CGGAGGGTTCTCAACGGTT 59.630 57.895 0.00 0.00 41.69 4.44
310 311 0.604578 CGGAGGGTTCTCAACGGTTA 59.395 55.000 0.00 0.00 41.69 2.85
311 312 1.403780 CGGAGGGTTCTCAACGGTTAG 60.404 57.143 0.00 0.00 41.69 2.34
312 313 1.622312 GGAGGGTTCTCAACGGTTAGT 59.378 52.381 0.00 0.00 41.69 2.24
313 314 2.353505 GGAGGGTTCTCAACGGTTAGTC 60.354 54.545 0.00 0.00 41.69 2.59
314 315 2.561858 GAGGGTTCTCAACGGTTAGTCT 59.438 50.000 0.00 0.00 39.74 3.24
315 316 2.970640 AGGGTTCTCAACGGTTAGTCTT 59.029 45.455 0.00 0.00 0.00 3.01
316 317 3.064931 GGGTTCTCAACGGTTAGTCTTG 58.935 50.000 0.00 0.00 0.00 3.02
317 318 2.479275 GGTTCTCAACGGTTAGTCTTGC 59.521 50.000 0.00 0.00 0.00 4.01
318 319 3.128349 GTTCTCAACGGTTAGTCTTGCA 58.872 45.455 0.00 0.00 0.00 4.08
319 320 2.750948 TCTCAACGGTTAGTCTTGCAC 58.249 47.619 0.00 0.00 0.00 4.57
320 321 1.455786 CTCAACGGTTAGTCTTGCACG 59.544 52.381 0.00 0.00 0.00 5.34
321 322 1.202440 TCAACGGTTAGTCTTGCACGT 60.202 47.619 0.00 0.00 35.95 4.49
322 323 1.191647 CAACGGTTAGTCTTGCACGTC 59.808 52.381 0.00 0.00 32.98 4.34
323 324 0.319297 ACGGTTAGTCTTGCACGTCC 60.319 55.000 0.00 0.00 0.00 4.79
324 325 0.319211 CGGTTAGTCTTGCACGTCCA 60.319 55.000 0.00 0.00 0.00 4.02
325 326 1.870580 CGGTTAGTCTTGCACGTCCAA 60.871 52.381 0.00 0.00 0.00 3.53
326 327 2.215196 GGTTAGTCTTGCACGTCCAAA 58.785 47.619 0.00 0.00 0.00 3.28
327 328 2.614983 GGTTAGTCTTGCACGTCCAAAA 59.385 45.455 0.00 0.00 0.00 2.44
328 329 3.065648 GGTTAGTCTTGCACGTCCAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
371 372 3.244491 CCAAATGGATTTGTTGGCAGGAA 60.244 43.478 10.45 0.00 44.21 3.36
385 387 9.651913 TTGTTGGCAGGAAAATAAAAATATCTC 57.348 29.630 0.00 0.00 0.00 2.75
392 394 9.503427 CAGGAAAATAAAAATATCTCGAACCAC 57.497 33.333 0.00 0.00 0.00 4.16
418 420 5.022282 TGTATATATGTGGGCCATCATCG 57.978 43.478 20.12 0.00 34.86 3.84
423 425 0.107703 TGTGGGCCATCATCGAACTC 60.108 55.000 10.70 0.00 0.00 3.01
540 544 7.489113 GGTTCGCAATTTAAGATGATCACAATT 59.511 33.333 0.00 0.00 0.00 2.32
761 829 2.092838 GGAAAGACATGAGAAACGAGCG 59.907 50.000 0.00 0.00 0.00 5.03
762 830 2.724977 AAGACATGAGAAACGAGCGA 57.275 45.000 0.00 0.00 0.00 4.93
1233 1313 4.649705 TGTCCCGGCTCCCCTTCA 62.650 66.667 0.00 0.00 0.00 3.02
1346 1426 1.338769 GGCGTCCTCTACACCAACATT 60.339 52.381 0.00 0.00 30.05 2.71
1718 1810 0.679002 TCTACTCGTCCAGAACCGGG 60.679 60.000 6.32 0.00 0.00 5.73
1787 1882 1.133915 GGTCAAAGTGTCCTGGTTGGA 60.134 52.381 0.00 0.00 43.86 3.53
1848 1943 1.963515 ACAGCAACAATTGGGAAGACC 59.036 47.619 10.83 0.00 40.81 3.85
1857 1952 3.240670 TGGGAAGACCAGACTGTGT 57.759 52.632 0.93 0.00 46.80 3.72
1866 1961 1.149174 CAGACTGTGTTGGTGGCCT 59.851 57.895 3.32 0.00 0.00 5.19
2043 2138 2.962421 GCTGAAGAGGTAGCTATCTGGT 59.038 50.000 12.34 0.00 36.99 4.00
2319 2423 2.025155 TCTTCTCATCGGAGCCACTAC 58.975 52.381 0.00 0.00 41.13 2.73
2365 2469 0.536233 TCGCTTTGTGCTTGGGCTTA 60.536 50.000 0.00 0.00 40.11 3.09
2369 2473 2.508526 CTTTGTGCTTGGGCTTACTCT 58.491 47.619 0.00 0.00 39.59 3.24
2370 2474 2.656947 TTGTGCTTGGGCTTACTCTT 57.343 45.000 0.00 0.00 39.59 2.85
2371 2475 1.896220 TGTGCTTGGGCTTACTCTTG 58.104 50.000 0.00 0.00 39.59 3.02
2443 2548 6.791303 TGAATTGTGTTACTCACTTTGTTCC 58.209 36.000 0.00 0.00 46.27 3.62
2689 3080 4.558538 TGCTGAGAAGTTTTCTTGCTTC 57.441 40.909 14.22 0.00 40.87 3.86
2725 3120 7.224557 GTGCATTTGGTTTGTTTCACTTATTCT 59.775 33.333 0.00 0.00 0.00 2.40
2813 3208 2.356135 GATAGTCCTTTTTGCGAGCCA 58.644 47.619 0.00 0.00 0.00 4.75
2907 3318 3.073798 TGAAGCTGACCTGTATTGGGAAA 59.926 43.478 0.00 0.00 0.00 3.13
2909 3320 3.421844 AGCTGACCTGTATTGGGAAAAC 58.578 45.455 0.00 0.00 0.00 2.43
2912 3323 4.651778 CTGACCTGTATTGGGAAAACTGA 58.348 43.478 0.00 0.00 0.00 3.41
2921 3332 6.603201 TGTATTGGGAAAACTGATCTCCATTC 59.397 38.462 0.00 0.00 0.00 2.67
2924 3335 5.392995 TGGGAAAACTGATCTCCATTCAAA 58.607 37.500 0.00 0.00 0.00 2.69
2977 3393 8.900983 TCATGATAATTTCGACCACATATTCA 57.099 30.769 0.00 0.00 0.00 2.57
2978 3394 8.773645 TCATGATAATTTCGACCACATATTCAC 58.226 33.333 0.00 0.00 0.00 3.18
2979 3395 7.490962 TGATAATTTCGACCACATATTCACC 57.509 36.000 0.00 0.00 0.00 4.02
2980 3396 7.051000 TGATAATTTCGACCACATATTCACCA 58.949 34.615 0.00 0.00 0.00 4.17
2981 3397 7.719193 TGATAATTTCGACCACATATTCACCAT 59.281 33.333 0.00 0.00 0.00 3.55
2982 3398 6.773976 AATTTCGACCACATATTCACCATT 57.226 33.333 0.00 0.00 0.00 3.16
2983 3399 7.873719 AATTTCGACCACATATTCACCATTA 57.126 32.000 0.00 0.00 0.00 1.90
2984 3400 7.873719 ATTTCGACCACATATTCACCATTAA 57.126 32.000 0.00 0.00 0.00 1.40
2985 3401 7.873719 TTTCGACCACATATTCACCATTAAT 57.126 32.000 0.00 0.00 0.00 1.40
2986 3402 6.859420 TCGACCACATATTCACCATTAATG 57.141 37.500 8.58 8.58 0.00 1.90
2987 3403 6.587273 TCGACCACATATTCACCATTAATGA 58.413 36.000 17.23 0.00 0.00 2.57
2988 3404 7.051000 TCGACCACATATTCACCATTAATGAA 58.949 34.615 17.23 4.74 40.25 2.57
2989 3405 7.719193 TCGACCACATATTCACCATTAATGAAT 59.281 33.333 17.23 11.76 46.18 2.57
2990 3406 8.352201 CGACCACATATTCACCATTAATGAATT 58.648 33.333 17.23 0.00 42.81 2.17
2991 3407 9.467258 GACCACATATTCACCATTAATGAATTG 57.533 33.333 17.23 10.48 42.81 2.32
2992 3408 8.980596 ACCACATATTCACCATTAATGAATTGT 58.019 29.630 17.23 12.31 42.81 2.71
2993 3409 9.820725 CCACATATTCACCATTAATGAATTGTT 57.179 29.630 17.23 6.21 42.81 2.83
3000 3416 8.292444 TCACCATTAATGAATTGTTAGAAGGG 57.708 34.615 17.23 0.00 0.00 3.95
3001 3417 7.341769 TCACCATTAATGAATTGTTAGAAGGGG 59.658 37.037 17.23 0.00 0.00 4.79
3002 3418 7.341769 CACCATTAATGAATTGTTAGAAGGGGA 59.658 37.037 17.23 0.00 0.00 4.81
3003 3419 8.067488 ACCATTAATGAATTGTTAGAAGGGGAT 58.933 33.333 17.23 0.00 0.00 3.85
3004 3420 8.362639 CCATTAATGAATTGTTAGAAGGGGATG 58.637 37.037 17.23 0.00 0.00 3.51
3005 3421 5.859205 AATGAATTGTTAGAAGGGGATGC 57.141 39.130 0.00 0.00 0.00 3.91
3006 3422 4.591321 TGAATTGTTAGAAGGGGATGCT 57.409 40.909 0.00 0.00 0.00 3.79
3007 3423 4.526970 TGAATTGTTAGAAGGGGATGCTC 58.473 43.478 0.00 0.00 0.00 4.26
3008 3424 4.228210 TGAATTGTTAGAAGGGGATGCTCT 59.772 41.667 0.00 0.00 0.00 4.09
3009 3425 3.914426 TTGTTAGAAGGGGATGCTCTC 57.086 47.619 0.00 0.00 0.00 3.20
3010 3426 2.832838 TGTTAGAAGGGGATGCTCTCA 58.167 47.619 0.00 0.00 0.00 3.27
3011 3427 2.501723 TGTTAGAAGGGGATGCTCTCAC 59.498 50.000 0.00 0.00 0.00 3.51
3012 3428 2.769095 GTTAGAAGGGGATGCTCTCACT 59.231 50.000 0.00 0.00 0.00 3.41
3013 3429 1.963985 AGAAGGGGATGCTCTCACTT 58.036 50.000 0.00 0.00 0.00 3.16
3014 3430 1.836802 AGAAGGGGATGCTCTCACTTC 59.163 52.381 0.00 7.38 38.60 3.01
3015 3431 1.836802 GAAGGGGATGCTCTCACTTCT 59.163 52.381 0.00 0.00 36.88 2.85
3016 3432 1.963985 AGGGGATGCTCTCACTTCTT 58.036 50.000 0.00 0.00 0.00 2.52
3017 3433 3.121929 AGGGGATGCTCTCACTTCTTA 57.878 47.619 0.00 0.00 0.00 2.10
3018 3434 3.663198 AGGGGATGCTCTCACTTCTTAT 58.337 45.455 0.00 0.00 0.00 1.73
3019 3435 4.043596 AGGGGATGCTCTCACTTCTTATT 58.956 43.478 0.00 0.00 0.00 1.40
3020 3436 5.219739 AGGGGATGCTCTCACTTCTTATTA 58.780 41.667 0.00 0.00 0.00 0.98
3021 3437 5.848921 AGGGGATGCTCTCACTTCTTATTAT 59.151 40.000 0.00 0.00 0.00 1.28
3022 3438 7.019388 AGGGGATGCTCTCACTTCTTATTATA 58.981 38.462 0.00 0.00 0.00 0.98
3023 3439 7.682028 AGGGGATGCTCTCACTTCTTATTATAT 59.318 37.037 0.00 0.00 0.00 0.86
3024 3440 7.768120 GGGGATGCTCTCACTTCTTATTATATG 59.232 40.741 0.00 0.00 0.00 1.78
3025 3441 7.279758 GGGATGCTCTCACTTCTTATTATATGC 59.720 40.741 0.00 0.00 0.00 3.14
3026 3442 7.279758 GGATGCTCTCACTTCTTATTATATGCC 59.720 40.741 0.00 0.00 0.00 4.40
3027 3443 7.308450 TGCTCTCACTTCTTATTATATGCCT 57.692 36.000 0.00 0.00 0.00 4.75
3028 3444 8.422577 TGCTCTCACTTCTTATTATATGCCTA 57.577 34.615 0.00 0.00 0.00 3.93
3029 3445 8.870116 TGCTCTCACTTCTTATTATATGCCTAA 58.130 33.333 0.00 0.00 0.00 2.69
3030 3446 9.364989 GCTCTCACTTCTTATTATATGCCTAAG 57.635 37.037 0.00 0.00 0.00 2.18
3031 3447 9.868277 CTCTCACTTCTTATTATATGCCTAAGG 57.132 37.037 0.00 0.00 0.00 2.69
3045 3461 4.061357 GCCTAAGGCTACCAGTAGAAAG 57.939 50.000 9.02 0.40 46.69 2.62
3046 3462 3.705072 GCCTAAGGCTACCAGTAGAAAGA 59.295 47.826 9.02 0.00 46.69 2.52
3047 3463 4.161754 GCCTAAGGCTACCAGTAGAAAGAA 59.838 45.833 9.02 0.00 46.69 2.52
3048 3464 5.338137 GCCTAAGGCTACCAGTAGAAAGAAA 60.338 44.000 9.02 0.00 46.69 2.52
3049 3465 6.708285 CCTAAGGCTACCAGTAGAAAGAAAA 58.292 40.000 9.02 0.00 35.21 2.29
3050 3466 7.166167 CCTAAGGCTACCAGTAGAAAGAAAAA 58.834 38.462 9.02 0.00 35.21 1.94
3051 3467 7.334671 CCTAAGGCTACCAGTAGAAAGAAAAAG 59.665 40.741 9.02 0.00 35.21 2.27
3052 3468 5.561679 AGGCTACCAGTAGAAAGAAAAAGG 58.438 41.667 9.02 0.00 35.21 3.11
3053 3469 5.309806 AGGCTACCAGTAGAAAGAAAAAGGA 59.690 40.000 9.02 0.00 35.21 3.36
3054 3470 6.002082 GGCTACCAGTAGAAAGAAAAAGGAA 58.998 40.000 9.02 0.00 35.21 3.36
3055 3471 6.489022 GGCTACCAGTAGAAAGAAAAAGGAAA 59.511 38.462 9.02 0.00 35.21 3.13
3056 3472 7.176865 GGCTACCAGTAGAAAGAAAAAGGAAAT 59.823 37.037 9.02 0.00 35.21 2.17
3057 3473 8.237949 GCTACCAGTAGAAAGAAAAAGGAAATC 58.762 37.037 9.02 0.00 35.21 2.17
3058 3474 7.526142 ACCAGTAGAAAGAAAAAGGAAATCC 57.474 36.000 0.00 0.00 0.00 3.01
3076 3492 9.025041 AGGAAATCCTTTGTTTAGGAAGTAATG 57.975 33.333 0.00 0.00 46.09 1.90
3077 3493 9.020731 GGAAATCCTTTGTTTAGGAAGTAATGA 57.979 33.333 0.00 0.00 46.94 2.57
3079 3495 9.807921 AAATCCTTTGTTTAGGAAGTAATGAGA 57.192 29.630 0.00 0.00 46.94 3.27
3080 3496 9.807921 AATCCTTTGTTTAGGAAGTAATGAGAA 57.192 29.630 0.00 0.00 46.94 2.87
3081 3497 9.981460 ATCCTTTGTTTAGGAAGTAATGAGAAT 57.019 29.630 0.00 0.00 46.94 2.40
3082 3498 9.449719 TCCTTTGTTTAGGAAGTAATGAGAATC 57.550 33.333 0.00 0.00 41.33 2.52
3083 3499 9.454859 CCTTTGTTTAGGAAGTAATGAGAATCT 57.545 33.333 0.00 0.00 37.50 2.40
3085 3501 8.792830 TTGTTTAGGAAGTAATGAGAATCTGG 57.207 34.615 0.00 0.00 34.92 3.86
3086 3502 7.918076 TGTTTAGGAAGTAATGAGAATCTGGT 58.082 34.615 0.00 0.00 34.92 4.00
3087 3503 7.824289 TGTTTAGGAAGTAATGAGAATCTGGTG 59.176 37.037 0.00 0.00 34.92 4.17
3088 3504 4.775236 AGGAAGTAATGAGAATCTGGTGC 58.225 43.478 0.00 0.00 34.92 5.01
3089 3505 4.225942 AGGAAGTAATGAGAATCTGGTGCA 59.774 41.667 0.00 0.00 34.92 4.57
3090 3506 4.574013 GGAAGTAATGAGAATCTGGTGCAG 59.426 45.833 0.00 0.00 34.92 4.41
3091 3507 4.148128 AGTAATGAGAATCTGGTGCAGG 57.852 45.455 0.00 0.00 34.92 4.85
3092 3508 2.431954 AATGAGAATCTGGTGCAGGG 57.568 50.000 0.00 0.00 34.92 4.45
3093 3509 0.549950 ATGAGAATCTGGTGCAGGGG 59.450 55.000 0.00 0.00 34.92 4.79
3094 3510 1.225704 GAGAATCTGGTGCAGGGGG 59.774 63.158 0.00 0.00 31.51 5.40
3095 3511 1.229951 AGAATCTGGTGCAGGGGGA 60.230 57.895 0.00 0.00 31.51 4.81
3096 3512 0.625683 AGAATCTGGTGCAGGGGGAT 60.626 55.000 0.00 0.00 31.51 3.85
3097 3513 1.140312 GAATCTGGTGCAGGGGGATA 58.860 55.000 0.00 0.00 31.51 2.59
3098 3514 1.494721 GAATCTGGTGCAGGGGGATAA 59.505 52.381 0.00 0.00 31.51 1.75
3099 3515 1.607225 ATCTGGTGCAGGGGGATAAA 58.393 50.000 0.00 0.00 31.51 1.40
3100 3516 0.918983 TCTGGTGCAGGGGGATAAAG 59.081 55.000 0.00 0.00 31.51 1.85
3101 3517 0.918983 CTGGTGCAGGGGGATAAAGA 59.081 55.000 0.00 0.00 0.00 2.52
3102 3518 0.623723 TGGTGCAGGGGGATAAAGAC 59.376 55.000 0.00 0.00 0.00 3.01
3103 3519 0.106669 GGTGCAGGGGGATAAAGACC 60.107 60.000 0.00 0.00 0.00 3.85
3104 3520 0.919710 GTGCAGGGGGATAAAGACCT 59.080 55.000 0.00 0.00 0.00 3.85
3105 3521 1.285078 GTGCAGGGGGATAAAGACCTT 59.715 52.381 0.00 0.00 0.00 3.50
3106 3522 2.000048 TGCAGGGGGATAAAGACCTTT 59.000 47.619 0.41 0.41 36.63 3.11
3107 3523 2.381961 TGCAGGGGGATAAAGACCTTTT 59.618 45.455 0.00 0.00 34.23 2.27
3108 3524 3.594232 TGCAGGGGGATAAAGACCTTTTA 59.406 43.478 0.00 0.00 34.23 1.52
3109 3525 4.231890 TGCAGGGGGATAAAGACCTTTTAT 59.768 41.667 0.00 0.00 34.23 1.40
3110 3526 5.208890 GCAGGGGGATAAAGACCTTTTATT 58.791 41.667 0.00 0.00 34.23 1.40
3111 3527 6.068735 TGCAGGGGGATAAAGACCTTTTATTA 60.069 38.462 0.00 0.00 34.23 0.98
3112 3528 7.010771 GCAGGGGGATAAAGACCTTTTATTAT 58.989 38.462 0.00 0.00 34.23 1.28
3113 3529 8.168058 GCAGGGGGATAAAGACCTTTTATTATA 58.832 37.037 0.00 0.00 34.23 0.98
3142 3558 8.773033 ATATGCCACTTCCTTTCATAAGAATT 57.227 30.769 0.00 0.00 32.89 2.17
3143 3559 6.916360 TGCCACTTCCTTTCATAAGAATTT 57.084 33.333 0.00 0.00 32.89 1.82
3144 3560 6.690530 TGCCACTTCCTTTCATAAGAATTTG 58.309 36.000 0.00 0.00 32.89 2.32
3145 3561 6.267471 TGCCACTTCCTTTCATAAGAATTTGT 59.733 34.615 0.00 0.00 32.89 2.83
3146 3562 7.154656 GCCACTTCCTTTCATAAGAATTTGTT 58.845 34.615 0.00 0.00 32.89 2.83
3147 3563 7.657354 GCCACTTCCTTTCATAAGAATTTGTTT 59.343 33.333 0.00 0.00 32.89 2.83
3148 3564 8.981647 CCACTTCCTTTCATAAGAATTTGTTTG 58.018 33.333 0.00 0.00 32.89 2.93
3149 3565 8.981647 CACTTCCTTTCATAAGAATTTGTTTGG 58.018 33.333 0.00 0.00 32.89 3.28
3150 3566 8.704668 ACTTCCTTTCATAAGAATTTGTTTGGT 58.295 29.630 0.00 0.00 32.89 3.67
3151 3567 9.196552 CTTCCTTTCATAAGAATTTGTTTGGTC 57.803 33.333 0.00 0.00 32.89 4.02
3152 3568 7.666623 TCCTTTCATAAGAATTTGTTTGGTCC 58.333 34.615 0.00 0.00 32.89 4.46
3153 3569 7.508977 TCCTTTCATAAGAATTTGTTTGGTCCT 59.491 33.333 0.00 0.00 32.89 3.85
3154 3570 8.150296 CCTTTCATAAGAATTTGTTTGGTCCTT 58.850 33.333 0.00 0.00 32.89 3.36
3155 3571 9.196552 CTTTCATAAGAATTTGTTTGGTCCTTC 57.803 33.333 0.00 0.00 32.89 3.46
3156 3572 8.477419 TTCATAAGAATTTGTTTGGTCCTTCT 57.523 30.769 0.00 0.00 0.00 2.85
3157 3573 7.885297 TCATAAGAATTTGTTTGGTCCTTCTG 58.115 34.615 0.00 0.00 0.00 3.02
3158 3574 7.723616 TCATAAGAATTTGTTTGGTCCTTCTGA 59.276 33.333 0.00 0.00 0.00 3.27
3159 3575 6.790232 AAGAATTTGTTTGGTCCTTCTGAA 57.210 33.333 0.00 0.00 0.00 3.02
3160 3576 6.983906 AGAATTTGTTTGGTCCTTCTGAAT 57.016 33.333 0.00 0.00 0.00 2.57
3161 3577 6.752168 AGAATTTGTTTGGTCCTTCTGAATG 58.248 36.000 0.00 0.00 0.00 2.67
3162 3578 6.324770 AGAATTTGTTTGGTCCTTCTGAATGT 59.675 34.615 0.00 0.00 0.00 2.71
3163 3579 5.514274 TTTGTTTGGTCCTTCTGAATGTC 57.486 39.130 0.00 0.00 0.00 3.06
3164 3580 4.437682 TGTTTGGTCCTTCTGAATGTCT 57.562 40.909 0.00 0.00 0.00 3.41
3165 3581 5.560722 TGTTTGGTCCTTCTGAATGTCTA 57.439 39.130 0.00 0.00 0.00 2.59
3166 3582 5.935945 TGTTTGGTCCTTCTGAATGTCTAA 58.064 37.500 0.00 0.00 0.00 2.10
3167 3583 6.361433 TGTTTGGTCCTTCTGAATGTCTAAA 58.639 36.000 0.00 0.00 0.00 1.85
3168 3584 6.486657 TGTTTGGTCCTTCTGAATGTCTAAAG 59.513 38.462 0.00 0.00 0.00 1.85
3169 3585 6.433847 TTGGTCCTTCTGAATGTCTAAAGA 57.566 37.500 0.00 0.00 0.00 2.52
3170 3586 6.433847 TGGTCCTTCTGAATGTCTAAAGAA 57.566 37.500 0.00 0.00 0.00 2.52
3171 3587 7.020827 TGGTCCTTCTGAATGTCTAAAGAAT 57.979 36.000 0.00 0.00 0.00 2.40
3172 3588 8.146053 TGGTCCTTCTGAATGTCTAAAGAATA 57.854 34.615 0.00 0.00 0.00 1.75
3173 3589 8.772250 TGGTCCTTCTGAATGTCTAAAGAATAT 58.228 33.333 0.00 0.00 0.00 1.28
3174 3590 9.620259 GGTCCTTCTGAATGTCTAAAGAATATT 57.380 33.333 0.00 0.00 0.00 1.28
3198 3614 9.986157 ATTACCTTGGATATTGATATGCAATCT 57.014 29.630 15.33 8.35 45.66 2.40
3199 3615 7.698506 ACCTTGGATATTGATATGCAATCTG 57.301 36.000 15.33 10.87 45.66 2.90
3200 3616 7.236529 ACCTTGGATATTGATATGCAATCTGT 58.763 34.615 15.33 11.32 45.66 3.41
3201 3617 7.727186 ACCTTGGATATTGATATGCAATCTGTT 59.273 33.333 15.33 0.88 45.66 3.16
3202 3618 8.582437 CCTTGGATATTGATATGCAATCTGTTT 58.418 33.333 15.33 0.00 45.66 2.83
3203 3619 9.976511 CTTGGATATTGATATGCAATCTGTTTT 57.023 29.630 15.33 0.00 45.66 2.43
3268 3684 9.921637 CTCTAGAAGAAATTAGAGTGTCTGTTT 57.078 33.333 0.00 0.00 38.59 2.83
3272 3688 9.482627 AGAAGAAATTAGAGTGTCTGTTTACAG 57.517 33.333 3.47 3.47 45.08 2.74
3273 3689 9.262358 GAAGAAATTAGAGTGTCTGTTTACAGT 57.738 33.333 9.53 0.00 44.12 3.55
3280 3696 7.948278 AGAGTGTCTGTTTACAGTATGAAAC 57.052 36.000 9.53 0.90 44.12 2.78
3281 3697 7.497595 AGAGTGTCTGTTTACAGTATGAAACA 58.502 34.615 9.53 3.32 44.12 2.83
3282 3698 8.150945 AGAGTGTCTGTTTACAGTATGAAACAT 58.849 33.333 9.53 0.00 41.56 2.71
3283 3699 9.419297 GAGTGTCTGTTTACAGTATGAAACATA 57.581 33.333 9.53 0.00 41.56 2.29
3284 3700 9.772973 AGTGTCTGTTTACAGTATGAAACATAA 57.227 29.630 9.53 0.00 41.56 1.90
3285 3701 9.807386 GTGTCTGTTTACAGTATGAAACATAAC 57.193 33.333 9.53 4.33 41.56 1.89
3286 3702 9.549078 TGTCTGTTTACAGTATGAAACATAACA 57.451 29.630 9.53 6.27 41.56 2.41
3287 3703 9.807386 GTCTGTTTACAGTATGAAACATAACAC 57.193 33.333 9.53 0.00 41.56 3.32
3288 3704 9.772973 TCTGTTTACAGTATGAAACATAACACT 57.227 29.630 9.53 0.00 41.56 3.55
3289 3705 9.811655 CTGTTTACAGTATGAAACATAACACTG 57.188 33.333 1.69 9.93 41.56 3.66
3290 3706 8.286800 TGTTTACAGTATGAAACATAACACTGC 58.713 33.333 10.89 0.00 39.43 4.40
3291 3707 8.504005 GTTTACAGTATGAAACATAACACTGCT 58.496 33.333 10.89 4.56 39.69 4.24
3292 3708 9.713713 TTTACAGTATGAAACATAACACTGCTA 57.286 29.630 10.89 3.93 39.69 3.49
3293 3709 7.834068 ACAGTATGAAACATAACACTGCTAG 57.166 36.000 10.89 0.00 39.69 3.42
3294 3710 6.313905 ACAGTATGAAACATAACACTGCTAGC 59.686 38.462 8.10 8.10 39.69 3.42
3295 3711 6.313658 CAGTATGAAACATAACACTGCTAGCA 59.686 38.462 18.22 18.22 39.69 3.49
3296 3712 6.878923 AGTATGAAACATAACACTGCTAGCAA 59.121 34.615 19.86 3.32 0.00 3.91
3297 3713 5.356882 TGAAACATAACACTGCTAGCAAC 57.643 39.130 19.86 0.00 0.00 4.17
3298 3714 4.819088 TGAAACATAACACTGCTAGCAACA 59.181 37.500 19.86 2.43 0.00 3.33
3299 3715 5.049474 TGAAACATAACACTGCTAGCAACAG 60.049 40.000 19.86 13.40 41.08 3.16
3300 3716 4.271696 ACATAACACTGCTAGCAACAGA 57.728 40.909 19.86 3.69 38.55 3.41
3301 3717 4.248859 ACATAACACTGCTAGCAACAGAG 58.751 43.478 19.86 9.15 38.55 3.35
3302 3718 2.918712 AACACTGCTAGCAACAGAGT 57.081 45.000 19.86 9.86 40.10 3.24
3303 3719 2.918712 ACACTGCTAGCAACAGAGTT 57.081 45.000 19.86 1.57 35.78 3.01
3304 3720 3.199880 ACACTGCTAGCAACAGAGTTT 57.800 42.857 19.86 2.81 35.78 2.66
3305 3721 3.545703 ACACTGCTAGCAACAGAGTTTT 58.454 40.909 19.86 0.00 35.78 2.43
3306 3722 4.703897 ACACTGCTAGCAACAGAGTTTTA 58.296 39.130 19.86 0.00 35.78 1.52
3307 3723 5.308825 ACACTGCTAGCAACAGAGTTTTAT 58.691 37.500 19.86 0.00 35.78 1.40
3308 3724 5.409826 ACACTGCTAGCAACAGAGTTTTATC 59.590 40.000 19.86 0.00 35.78 1.75
3309 3725 5.409520 CACTGCTAGCAACAGAGTTTTATCA 59.590 40.000 19.86 0.00 38.55 2.15
3310 3726 5.641209 ACTGCTAGCAACAGAGTTTTATCAG 59.359 40.000 19.86 3.41 38.55 2.90
3311 3727 4.393062 TGCTAGCAACAGAGTTTTATCAGC 59.607 41.667 16.84 0.00 0.00 4.26
3312 3728 4.393062 GCTAGCAACAGAGTTTTATCAGCA 59.607 41.667 10.63 0.00 0.00 4.41
3313 3729 4.756084 AGCAACAGAGTTTTATCAGCAC 57.244 40.909 0.00 0.00 0.00 4.40
3314 3730 4.392940 AGCAACAGAGTTTTATCAGCACT 58.607 39.130 0.00 0.00 0.00 4.40
3315 3731 4.823989 AGCAACAGAGTTTTATCAGCACTT 59.176 37.500 0.00 0.00 0.00 3.16
3316 3732 4.913924 GCAACAGAGTTTTATCAGCACTTG 59.086 41.667 0.00 0.00 0.00 3.16
3317 3733 5.455392 CAACAGAGTTTTATCAGCACTTGG 58.545 41.667 0.00 0.00 0.00 3.61
3318 3734 4.718961 ACAGAGTTTTATCAGCACTTGGT 58.281 39.130 0.00 0.00 0.00 3.67
3319 3735 4.516698 ACAGAGTTTTATCAGCACTTGGTG 59.483 41.667 1.86 1.86 44.29 4.17
3320 3736 4.074970 AGAGTTTTATCAGCACTTGGTGG 58.925 43.478 8.49 0.00 43.23 4.61
3321 3737 3.157087 AGTTTTATCAGCACTTGGTGGG 58.843 45.455 8.49 0.00 43.23 4.61
3322 3738 3.153919 GTTTTATCAGCACTTGGTGGGA 58.846 45.455 8.49 0.00 43.23 4.37
3323 3739 2.489938 TTATCAGCACTTGGTGGGAC 57.510 50.000 8.49 0.00 43.23 4.46
3324 3740 1.656587 TATCAGCACTTGGTGGGACT 58.343 50.000 8.49 0.00 43.23 3.85
3325 3741 0.773644 ATCAGCACTTGGTGGGACTT 59.226 50.000 8.49 0.00 43.23 3.01
3326 3742 1.429930 TCAGCACTTGGTGGGACTTA 58.570 50.000 8.49 0.00 43.23 2.24
3327 3743 1.985159 TCAGCACTTGGTGGGACTTAT 59.015 47.619 8.49 0.00 43.23 1.73
3328 3744 2.375174 TCAGCACTTGGTGGGACTTATT 59.625 45.455 8.49 0.00 43.23 1.40
3329 3745 3.585289 TCAGCACTTGGTGGGACTTATTA 59.415 43.478 8.49 0.00 43.23 0.98
3330 3746 4.042311 TCAGCACTTGGTGGGACTTATTAA 59.958 41.667 8.49 0.00 43.23 1.40
3331 3747 4.396166 CAGCACTTGGTGGGACTTATTAAG 59.604 45.833 1.79 1.79 39.67 1.85
3332 3748 3.694566 GCACTTGGTGGGACTTATTAAGG 59.305 47.826 8.26 0.00 33.64 2.69
3333 3749 4.270008 CACTTGGTGGGACTTATTAAGGG 58.730 47.826 8.26 0.00 0.00 3.95
3334 3750 3.268595 ACTTGGTGGGACTTATTAAGGGG 59.731 47.826 8.26 0.00 0.00 4.79
3335 3751 2.937442 TGGTGGGACTTATTAAGGGGT 58.063 47.619 8.26 0.00 0.00 4.95
3336 3752 2.578940 TGGTGGGACTTATTAAGGGGTG 59.421 50.000 8.26 0.00 0.00 4.61
3337 3753 2.848071 GGTGGGACTTATTAAGGGGTGA 59.152 50.000 8.26 0.00 0.00 4.02
3338 3754 3.462205 GGTGGGACTTATTAAGGGGTGAT 59.538 47.826 8.26 0.00 0.00 3.06
3339 3755 4.445879 GGTGGGACTTATTAAGGGGTGATC 60.446 50.000 8.26 0.00 0.00 2.92
3340 3756 4.412528 GTGGGACTTATTAAGGGGTGATCT 59.587 45.833 8.26 0.00 0.00 2.75
3341 3757 5.043762 TGGGACTTATTAAGGGGTGATCTT 58.956 41.667 8.26 0.00 0.00 2.40
3342 3758 5.494706 TGGGACTTATTAAGGGGTGATCTTT 59.505 40.000 8.26 0.00 0.00 2.52
3343 3759 6.011096 TGGGACTTATTAAGGGGTGATCTTTT 60.011 38.462 8.26 0.00 0.00 2.27
3344 3760 7.184936 TGGGACTTATTAAGGGGTGATCTTTTA 59.815 37.037 8.26 0.00 0.00 1.52
3345 3761 7.720074 GGGACTTATTAAGGGGTGATCTTTTAG 59.280 40.741 8.26 0.00 0.00 1.85
3346 3762 8.272889 GGACTTATTAAGGGGTGATCTTTTAGT 58.727 37.037 8.26 0.00 0.00 2.24
3347 3763 9.682465 GACTTATTAAGGGGTGATCTTTTAGTT 57.318 33.333 8.26 0.00 0.00 2.24
3348 3764 9.682465 ACTTATTAAGGGGTGATCTTTTAGTTC 57.318 33.333 8.26 0.00 0.00 3.01
3349 3765 9.907229 CTTATTAAGGGGTGATCTTTTAGTTCT 57.093 33.333 0.00 0.00 0.00 3.01
3350 3766 9.901172 TTATTAAGGGGTGATCTTTTAGTTCTC 57.099 33.333 0.00 0.00 0.00 2.87
3351 3767 7.569599 TTAAGGGGTGATCTTTTAGTTCTCT 57.430 36.000 0.00 0.00 0.00 3.10
3352 3768 6.455690 AAGGGGTGATCTTTTAGTTCTCTT 57.544 37.500 0.00 0.00 0.00 2.85
3353 3769 6.455690 AGGGGTGATCTTTTAGTTCTCTTT 57.544 37.500 0.00 0.00 0.00 2.52
3354 3770 6.477253 AGGGGTGATCTTTTAGTTCTCTTTC 58.523 40.000 0.00 0.00 0.00 2.62
3355 3771 6.044404 AGGGGTGATCTTTTAGTTCTCTTTCA 59.956 38.462 0.00 0.00 0.00 2.69
3356 3772 6.372937 GGGGTGATCTTTTAGTTCTCTTTCAG 59.627 42.308 0.00 0.00 0.00 3.02
3357 3773 6.372937 GGGTGATCTTTTAGTTCTCTTTCAGG 59.627 42.308 0.00 0.00 0.00 3.86
3358 3774 7.162082 GGTGATCTTTTAGTTCTCTTTCAGGA 58.838 38.462 0.00 0.00 0.00 3.86
3359 3775 7.826744 GGTGATCTTTTAGTTCTCTTTCAGGAT 59.173 37.037 0.00 0.00 0.00 3.24
3360 3776 9.225436 GTGATCTTTTAGTTCTCTTTCAGGATT 57.775 33.333 0.00 0.00 0.00 3.01
3361 3777 9.799106 TGATCTTTTAGTTCTCTTTCAGGATTT 57.201 29.630 0.00 0.00 0.00 2.17
3379 3795 9.919416 TCAGGATTTCTATGATAACAAATTGGA 57.081 29.630 0.00 0.00 0.00 3.53
3390 3806 9.646522 ATGATAACAAATTGGATTTAGCTAGGT 57.353 29.630 0.00 0.00 0.00 3.08
3391 3807 9.474313 TGATAACAAATTGGATTTAGCTAGGTT 57.526 29.630 0.00 0.00 0.00 3.50
3392 3808 9.952188 GATAACAAATTGGATTTAGCTAGGTTC 57.048 33.333 0.00 0.00 0.00 3.62
3393 3809 7.775053 AACAAATTGGATTTAGCTAGGTTCA 57.225 32.000 0.00 0.00 0.00 3.18
3394 3810 7.775053 ACAAATTGGATTTAGCTAGGTTCAA 57.225 32.000 0.00 4.26 0.00 2.69
3395 3811 8.366359 ACAAATTGGATTTAGCTAGGTTCAAT 57.634 30.769 0.00 7.72 0.00 2.57
3396 3812 8.815912 ACAAATTGGATTTAGCTAGGTTCAATT 58.184 29.630 15.65 15.65 35.81 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.542080 TCGAATTTCCCTTTTAGGTGTTATCTA 58.458 33.333 0.00 0.00 31.93 1.98
1 2 7.336176 GTCGAATTTCCCTTTTAGGTGTTATCT 59.664 37.037 0.00 0.00 31.93 1.98
2 3 7.336176 AGTCGAATTTCCCTTTTAGGTGTTATC 59.664 37.037 0.00 0.00 31.93 1.75
3 4 7.120726 CAGTCGAATTTCCCTTTTAGGTGTTAT 59.879 37.037 0.00 0.00 31.93 1.89
4 5 6.428771 CAGTCGAATTTCCCTTTTAGGTGTTA 59.571 38.462 0.00 0.00 31.93 2.41
5 6 5.240844 CAGTCGAATTTCCCTTTTAGGTGTT 59.759 40.000 0.00 0.00 31.93 3.32
6 7 4.760204 CAGTCGAATTTCCCTTTTAGGTGT 59.240 41.667 0.00 0.00 31.93 4.16
7 8 4.156008 CCAGTCGAATTTCCCTTTTAGGTG 59.844 45.833 0.00 0.00 31.93 4.00
8 9 4.332828 CCAGTCGAATTTCCCTTTTAGGT 58.667 43.478 0.00 0.00 31.93 3.08
9 10 3.694566 CCCAGTCGAATTTCCCTTTTAGG 59.305 47.826 0.00 0.00 34.30 2.69
10 11 4.585879 TCCCAGTCGAATTTCCCTTTTAG 58.414 43.478 0.00 0.00 0.00 1.85
11 12 4.644163 TCCCAGTCGAATTTCCCTTTTA 57.356 40.909 0.00 0.00 0.00 1.52
12 13 3.518992 TCCCAGTCGAATTTCCCTTTT 57.481 42.857 0.00 0.00 0.00 2.27
13 14 3.518992 TTCCCAGTCGAATTTCCCTTT 57.481 42.857 0.00 0.00 0.00 3.11
14 15 3.073946 TCTTTCCCAGTCGAATTTCCCTT 59.926 43.478 0.00 0.00 0.00 3.95
15 16 2.642807 TCTTTCCCAGTCGAATTTCCCT 59.357 45.455 0.00 0.00 0.00 4.20
16 17 3.010420 CTCTTTCCCAGTCGAATTTCCC 58.990 50.000 0.00 0.00 0.00 3.97
17 18 3.676093 ACTCTTTCCCAGTCGAATTTCC 58.324 45.455 0.00 0.00 0.00 3.13
18 19 3.685272 GGACTCTTTCCCAGTCGAATTTC 59.315 47.826 0.00 0.00 41.20 2.17
19 20 3.072476 TGGACTCTTTCCCAGTCGAATTT 59.928 43.478 0.00 0.00 45.17 1.82
20 21 2.637872 TGGACTCTTTCCCAGTCGAATT 59.362 45.455 0.00 0.00 45.17 2.17
21 22 2.257207 TGGACTCTTTCCCAGTCGAAT 58.743 47.619 0.00 0.00 45.17 3.34
22 23 1.712056 TGGACTCTTTCCCAGTCGAA 58.288 50.000 0.00 0.00 45.17 3.71
23 24 1.618837 CTTGGACTCTTTCCCAGTCGA 59.381 52.381 0.00 0.00 45.17 4.20
24 25 1.344763 ACTTGGACTCTTTCCCAGTCG 59.655 52.381 0.00 0.00 45.48 4.18
27 28 4.563786 GGTCTAACTTGGACTCTTTCCCAG 60.564 50.000 5.37 0.00 45.17 4.45
28 29 3.326880 GGTCTAACTTGGACTCTTTCCCA 59.673 47.826 5.37 0.00 45.17 4.37
29 30 3.583526 AGGTCTAACTTGGACTCTTTCCC 59.416 47.826 5.37 0.00 45.17 3.97
30 31 4.528987 AGAGGTCTAACTTGGACTCTTTCC 59.471 45.833 5.37 0.00 46.13 3.13
31 32 5.731957 AGAGGTCTAACTTGGACTCTTTC 57.268 43.478 5.37 0.39 34.47 2.62
32 33 6.464607 GGAAAGAGGTCTAACTTGGACTCTTT 60.465 42.308 20.19 20.19 40.01 2.52
33 34 5.012251 GGAAAGAGGTCTAACTTGGACTCTT 59.988 44.000 5.37 8.82 35.21 2.85
34 35 4.528987 GGAAAGAGGTCTAACTTGGACTCT 59.471 45.833 5.37 4.10 34.47 3.24
35 36 4.322877 GGGAAAGAGGTCTAACTTGGACTC 60.323 50.000 5.37 2.19 34.47 3.36
36 37 3.583526 GGGAAAGAGGTCTAACTTGGACT 59.416 47.826 5.37 0.00 34.47 3.85
37 38 3.583526 AGGGAAAGAGGTCTAACTTGGAC 59.416 47.826 0.00 0.00 0.00 4.02
38 39 3.870559 AGGGAAAGAGGTCTAACTTGGA 58.129 45.455 0.00 0.00 0.00 3.53
39 40 4.642466 AAGGGAAAGAGGTCTAACTTGG 57.358 45.455 0.00 0.00 0.00 3.61
40 41 5.621193 TGAAAGGGAAAGAGGTCTAACTTG 58.379 41.667 0.00 0.00 0.00 3.16
41 42 5.906772 TGAAAGGGAAAGAGGTCTAACTT 57.093 39.130 0.00 0.00 0.00 2.66
42 43 5.906772 TTGAAAGGGAAAGAGGTCTAACT 57.093 39.130 0.00 0.00 0.00 2.24
43 44 6.954487 TTTTGAAAGGGAAAGAGGTCTAAC 57.046 37.500 0.00 0.00 0.00 2.34
44 45 8.547481 AAATTTTGAAAGGGAAAGAGGTCTAA 57.453 30.769 0.00 0.00 0.00 2.10
45 46 9.297037 CTAAATTTTGAAAGGGAAAGAGGTCTA 57.703 33.333 0.00 0.00 0.00 2.59
46 47 8.004801 TCTAAATTTTGAAAGGGAAAGAGGTCT 58.995 33.333 0.00 0.00 0.00 3.85
47 48 8.178313 TCTAAATTTTGAAAGGGAAAGAGGTC 57.822 34.615 0.00 0.00 0.00 3.85
48 49 7.255977 GCTCTAAATTTTGAAAGGGAAAGAGGT 60.256 37.037 0.00 0.00 0.00 3.85
49 50 7.093354 GCTCTAAATTTTGAAAGGGAAAGAGG 58.907 38.462 0.00 0.00 0.00 3.69
50 51 7.661040 TGCTCTAAATTTTGAAAGGGAAAGAG 58.339 34.615 0.00 0.00 0.00 2.85
51 52 7.595819 TGCTCTAAATTTTGAAAGGGAAAGA 57.404 32.000 0.00 0.00 0.00 2.52
70 71 9.415544 GAATTTTGAACAGTGAAAATATGCTCT 57.584 29.630 0.00 0.00 32.66 4.09
71 72 9.195411 TGAATTTTGAACAGTGAAAATATGCTC 57.805 29.630 0.00 0.00 32.66 4.26
72 73 9.545105 TTGAATTTTGAACAGTGAAAATATGCT 57.455 25.926 0.00 0.00 32.66 3.79
73 74 9.801714 CTTGAATTTTGAACAGTGAAAATATGC 57.198 29.630 0.00 0.00 32.66 3.14
81 82 9.145865 GGTAAAAACTTGAATTTTGAACAGTGA 57.854 29.630 0.00 0.00 32.12 3.41
82 83 8.930760 TGGTAAAAACTTGAATTTTGAACAGTG 58.069 29.630 0.00 0.00 26.58 3.66
83 84 9.150348 CTGGTAAAAACTTGAATTTTGAACAGT 57.850 29.630 5.53 0.00 40.66 3.55
84 85 8.116136 GCTGGTAAAAACTTGAATTTTGAACAG 58.884 33.333 8.46 8.46 45.27 3.16
85 86 7.604164 TGCTGGTAAAAACTTGAATTTTGAACA 59.396 29.630 0.00 0.00 30.37 3.18
86 87 7.969314 TGCTGGTAAAAACTTGAATTTTGAAC 58.031 30.769 0.00 0.00 32.12 3.18
87 88 8.553459 TTGCTGGTAAAAACTTGAATTTTGAA 57.447 26.923 0.00 0.00 32.12 2.69
88 89 8.729805 ATTGCTGGTAAAAACTTGAATTTTGA 57.270 26.923 0.00 0.00 32.12 2.69
94 95 9.474920 CAGATTAATTGCTGGTAAAAACTTGAA 57.525 29.630 0.00 0.00 0.00 2.69
95 96 8.855110 TCAGATTAATTGCTGGTAAAAACTTGA 58.145 29.630 4.76 0.00 33.05 3.02
96 97 9.643693 ATCAGATTAATTGCTGGTAAAAACTTG 57.356 29.630 4.76 0.00 33.05 3.16
139 140 9.418045 AGTGCAATATTACCAATTTTGTGTAAC 57.582 29.630 0.00 0.00 33.90 2.50
140 141 9.632807 GAGTGCAATATTACCAATTTTGTGTAA 57.367 29.630 0.00 6.75 33.90 2.41
141 142 8.247562 GGAGTGCAATATTACCAATTTTGTGTA 58.752 33.333 0.00 0.00 33.90 2.90
142 143 7.039082 AGGAGTGCAATATTACCAATTTTGTGT 60.039 33.333 0.00 0.00 33.90 3.72
143 144 7.276218 CAGGAGTGCAATATTACCAATTTTGTG 59.724 37.037 0.00 0.00 33.90 3.33
144 145 7.039082 ACAGGAGTGCAATATTACCAATTTTGT 60.039 33.333 0.00 0.00 33.90 2.83
145 146 7.322664 ACAGGAGTGCAATATTACCAATTTTG 58.677 34.615 0.00 0.00 34.32 2.44
146 147 7.363793 GGACAGGAGTGCAATATTACCAATTTT 60.364 37.037 0.00 0.00 35.94 1.82
147 148 6.096846 GGACAGGAGTGCAATATTACCAATTT 59.903 38.462 0.00 0.00 35.94 1.82
148 149 5.594317 GGACAGGAGTGCAATATTACCAATT 59.406 40.000 0.00 0.00 35.94 2.32
149 150 5.133221 GGACAGGAGTGCAATATTACCAAT 58.867 41.667 0.00 0.00 35.94 3.16
150 151 4.523083 GGACAGGAGTGCAATATTACCAA 58.477 43.478 0.00 0.00 35.94 3.67
151 152 3.431626 CGGACAGGAGTGCAATATTACCA 60.432 47.826 0.00 0.00 35.57 3.25
152 153 3.131396 CGGACAGGAGTGCAATATTACC 58.869 50.000 0.00 0.00 35.57 2.85
153 154 3.131396 CCGGACAGGAGTGCAATATTAC 58.869 50.000 0.00 0.00 45.00 1.89
154 155 2.484770 GCCGGACAGGAGTGCAATATTA 60.485 50.000 5.05 0.00 45.00 0.98
155 156 1.747206 GCCGGACAGGAGTGCAATATT 60.747 52.381 5.05 0.00 45.00 1.28
156 157 0.179045 GCCGGACAGGAGTGCAATAT 60.179 55.000 5.05 0.00 45.00 1.28
157 158 1.220749 GCCGGACAGGAGTGCAATA 59.779 57.895 5.05 0.00 45.00 1.90
158 159 2.045926 GCCGGACAGGAGTGCAAT 60.046 61.111 5.05 0.00 45.00 3.56
159 160 4.680237 CGCCGGACAGGAGTGCAA 62.680 66.667 5.05 0.00 45.00 4.08
162 163 4.742201 CACCGCCGGACAGGAGTG 62.742 72.222 11.71 0.00 45.00 3.51
167 168 3.423154 GAAAGCACCGCCGGACAG 61.423 66.667 11.71 0.00 0.00 3.51
168 169 2.102109 TAAGAAAGCACCGCCGGACA 62.102 55.000 11.71 0.00 0.00 4.02
169 170 1.375013 TAAGAAAGCACCGCCGGAC 60.375 57.895 11.71 0.37 0.00 4.79
170 171 1.375013 GTAAGAAAGCACCGCCGGA 60.375 57.895 11.71 0.00 0.00 5.14
171 172 1.231958 TTGTAAGAAAGCACCGCCGG 61.232 55.000 0.00 0.00 0.00 6.13
172 173 0.165944 CTTGTAAGAAAGCACCGCCG 59.834 55.000 0.00 0.00 0.00 6.46
173 174 1.235724 ACTTGTAAGAAAGCACCGCC 58.764 50.000 0.00 0.00 0.00 6.13
174 175 4.680171 ATAACTTGTAAGAAAGCACCGC 57.320 40.909 0.00 0.00 0.00 5.68
175 176 7.360575 AGTTATAACTTGTAAGAAAGCACCG 57.639 36.000 12.50 0.00 35.21 4.94
176 177 9.433153 AGTAGTTATAACTTGTAAGAAAGCACC 57.567 33.333 22.66 0.00 40.37 5.01
227 228 9.691362 GTGAAATTTGGCTGTAATTTCTTTCTA 57.309 29.630 21.73 8.73 45.55 2.10
228 229 8.203485 TGTGAAATTTGGCTGTAATTTCTTTCT 58.797 29.630 21.73 0.29 45.55 2.52
229 230 8.364129 TGTGAAATTTGGCTGTAATTTCTTTC 57.636 30.769 21.73 16.04 45.55 2.62
230 231 8.729805 TTGTGAAATTTGGCTGTAATTTCTTT 57.270 26.923 21.73 1.62 45.55 2.52
231 232 8.907222 ATTGTGAAATTTGGCTGTAATTTCTT 57.093 26.923 21.73 10.33 45.55 2.52
232 233 8.776470 CAATTGTGAAATTTGGCTGTAATTTCT 58.224 29.630 21.73 8.96 45.55 2.52
233 234 8.772705 TCAATTGTGAAATTTGGCTGTAATTTC 58.227 29.630 17.91 17.91 45.55 2.17
234 235 8.674263 TCAATTGTGAAATTTGGCTGTAATTT 57.326 26.923 5.13 0.00 37.77 1.82
235 236 8.558700 GTTCAATTGTGAAATTTGGCTGTAATT 58.441 29.630 5.13 0.00 45.29 1.40
236 237 7.714377 TGTTCAATTGTGAAATTTGGCTGTAAT 59.286 29.630 5.13 0.00 45.29 1.89
237 238 7.044181 TGTTCAATTGTGAAATTTGGCTGTAA 58.956 30.769 5.13 0.00 45.29 2.41
238 239 6.577103 TGTTCAATTGTGAAATTTGGCTGTA 58.423 32.000 5.13 0.00 45.29 2.74
239 240 5.426504 TGTTCAATTGTGAAATTTGGCTGT 58.573 33.333 5.13 0.00 45.29 4.40
240 241 5.524646 ACTGTTCAATTGTGAAATTTGGCTG 59.475 36.000 5.13 0.00 45.29 4.85
241 242 5.673514 ACTGTTCAATTGTGAAATTTGGCT 58.326 33.333 5.13 0.00 45.29 4.75
242 243 5.050159 GGACTGTTCAATTGTGAAATTTGGC 60.050 40.000 5.13 0.00 45.29 4.52
243 244 6.047870 TGGACTGTTCAATTGTGAAATTTGG 58.952 36.000 5.13 0.00 45.29 3.28
244 245 7.536895 TTGGACTGTTCAATTGTGAAATTTG 57.463 32.000 5.13 0.00 45.29 2.32
245 246 8.735692 ATTTGGACTGTTCAATTGTGAAATTT 57.264 26.923 1.66 0.00 45.29 1.82
246 247 8.735692 AATTTGGACTGTTCAATTGTGAAATT 57.264 26.923 1.66 0.00 45.29 1.82
247 248 7.986320 TGAATTTGGACTGTTCAATTGTGAAAT 59.014 29.630 1.66 0.00 45.29 2.17
248 249 7.326454 TGAATTTGGACTGTTCAATTGTGAAA 58.674 30.769 1.66 0.00 45.29 2.69
249 250 6.871844 TGAATTTGGACTGTTCAATTGTGAA 58.128 32.000 1.66 0.00 41.57 3.18
250 251 6.320926 TCTGAATTTGGACTGTTCAATTGTGA 59.679 34.615 1.66 0.00 32.08 3.58
251 252 6.506147 TCTGAATTTGGACTGTTCAATTGTG 58.494 36.000 1.66 0.00 32.08 3.33
252 253 6.713762 TCTGAATTTGGACTGTTCAATTGT 57.286 33.333 1.66 0.00 32.08 2.71
253 254 9.132521 GTATTCTGAATTTGGACTGTTCAATTG 57.867 33.333 8.38 0.00 32.08 2.32
254 255 8.859090 TGTATTCTGAATTTGGACTGTTCAATT 58.141 29.630 8.38 0.00 32.08 2.32
255 256 8.408043 TGTATTCTGAATTTGGACTGTTCAAT 57.592 30.769 8.38 0.00 32.08 2.57
256 257 7.815840 TGTATTCTGAATTTGGACTGTTCAA 57.184 32.000 8.38 0.00 32.08 2.69
257 258 8.408043 AATGTATTCTGAATTTGGACTGTTCA 57.592 30.769 8.38 0.00 0.00 3.18
258 259 9.132521 CAAATGTATTCTGAATTTGGACTGTTC 57.867 33.333 8.38 0.00 37.55 3.18
259 260 8.859090 TCAAATGTATTCTGAATTTGGACTGTT 58.141 29.630 8.38 0.00 40.23 3.16
260 261 8.408043 TCAAATGTATTCTGAATTTGGACTGT 57.592 30.769 8.38 0.00 40.23 3.55
261 262 9.695526 TTTCAAATGTATTCTGAATTTGGACTG 57.304 29.630 8.38 0.92 40.23 3.51
286 287 1.944709 CGTTGAGAACCCTCCGTTTTT 59.055 47.619 0.00 0.00 38.66 1.94
287 288 1.589803 CGTTGAGAACCCTCCGTTTT 58.410 50.000 0.00 0.00 38.66 2.43
288 289 0.250166 CCGTTGAGAACCCTCCGTTT 60.250 55.000 0.00 0.00 38.66 3.60
289 290 1.370064 CCGTTGAGAACCCTCCGTT 59.630 57.895 0.00 0.00 38.66 4.44
290 291 1.405272 AACCGTTGAGAACCCTCCGT 61.405 55.000 0.00 0.00 38.66 4.69
291 292 0.604578 TAACCGTTGAGAACCCTCCG 59.395 55.000 0.00 0.00 38.66 4.63
292 293 1.622312 ACTAACCGTTGAGAACCCTCC 59.378 52.381 0.00 0.00 38.66 4.30
293 294 2.561858 AGACTAACCGTTGAGAACCCTC 59.438 50.000 0.00 0.00 39.86 4.30
294 295 2.606378 AGACTAACCGTTGAGAACCCT 58.394 47.619 0.00 0.00 0.00 4.34
295 296 3.064931 CAAGACTAACCGTTGAGAACCC 58.935 50.000 0.00 0.00 0.00 4.11
296 297 2.479275 GCAAGACTAACCGTTGAGAACC 59.521 50.000 0.00 0.00 0.00 3.62
297 298 3.059800 GTGCAAGACTAACCGTTGAGAAC 60.060 47.826 0.00 0.00 0.00 3.01
298 299 3.128349 GTGCAAGACTAACCGTTGAGAA 58.872 45.455 0.00 0.00 0.00 2.87
299 300 2.750948 GTGCAAGACTAACCGTTGAGA 58.249 47.619 0.00 0.00 0.00 3.27
300 301 1.455786 CGTGCAAGACTAACCGTTGAG 59.544 52.381 0.00 0.00 0.00 3.02
301 302 1.202440 ACGTGCAAGACTAACCGTTGA 60.202 47.619 6.65 0.00 0.00 3.18
302 303 1.191647 GACGTGCAAGACTAACCGTTG 59.808 52.381 6.65 0.00 0.00 4.10
303 304 1.494824 GACGTGCAAGACTAACCGTT 58.505 50.000 6.65 0.00 0.00 4.44
304 305 0.319297 GGACGTGCAAGACTAACCGT 60.319 55.000 6.65 0.00 0.00 4.83
305 306 0.319211 TGGACGTGCAAGACTAACCG 60.319 55.000 7.52 0.00 0.00 4.44
306 307 1.873698 TTGGACGTGCAAGACTAACC 58.126 50.000 19.24 0.00 0.00 2.85
307 308 3.955771 TTTTGGACGTGCAAGACTAAC 57.044 42.857 21.86 0.00 0.00 2.34
327 328 7.256494 TGGATGCATCCCTTTCTTTATTTTT 57.744 32.000 36.97 0.00 46.59 1.94
328 329 6.872585 TGGATGCATCCCTTTCTTTATTTT 57.127 33.333 36.97 0.00 46.59 1.82
329 330 6.872585 TTGGATGCATCCCTTTCTTTATTT 57.127 33.333 36.97 0.00 46.59 1.40
330 331 6.872585 TTTGGATGCATCCCTTTCTTTATT 57.127 33.333 36.97 0.00 46.59 1.40
331 332 6.183361 CCATTTGGATGCATCCCTTTCTTTAT 60.183 38.462 36.97 17.85 46.59 1.40
332 333 5.129155 CCATTTGGATGCATCCCTTTCTTTA 59.871 40.000 36.97 17.41 46.59 1.85
333 334 4.080751 CCATTTGGATGCATCCCTTTCTTT 60.081 41.667 36.97 15.77 46.59 2.52
334 335 3.453353 CCATTTGGATGCATCCCTTTCTT 59.547 43.478 36.97 16.73 46.59 2.52
335 336 3.036091 CCATTTGGATGCATCCCTTTCT 58.964 45.455 36.97 17.87 46.59 2.52
336 337 3.033184 TCCATTTGGATGCATCCCTTTC 58.967 45.455 36.97 16.72 46.59 2.62
337 338 3.119009 TCCATTTGGATGCATCCCTTT 57.881 42.857 36.97 21.30 46.59 3.11
338 339 2.852714 TCCATTTGGATGCATCCCTT 57.147 45.000 36.97 21.63 46.59 3.95
367 368 9.462606 AGTGGTTCGAGATATTTTTATTTTCCT 57.537 29.630 0.00 0.00 0.00 3.36
385 387 6.512741 GCCCACATATATACAAAAGTGGTTCG 60.513 42.308 13.66 3.76 43.73 3.95
392 394 7.414429 CGATGATGGCCCACATATATACAAAAG 60.414 40.741 10.97 0.00 40.72 2.27
397 399 5.276461 TCGATGATGGCCCACATATATAC 57.724 43.478 10.97 0.00 40.72 1.47
418 420 1.056660 TGAGTTGGTGAGGGGAGTTC 58.943 55.000 0.00 0.00 0.00 3.01
423 425 1.679898 GGAGTGAGTTGGTGAGGGG 59.320 63.158 0.00 0.00 0.00 4.79
822 890 0.742990 TCAGCCGTAATTTCGCCCAG 60.743 55.000 0.00 0.00 0.00 4.45
1027 1095 1.890894 CTCCGGCGAAGAGGAAGAA 59.109 57.895 9.30 0.00 35.63 2.52
1094 1162 1.454976 CTCCTCCTCCATGGCCATG 59.545 63.158 34.82 34.82 38.51 3.66
1095 1163 1.773391 CCTCCTCCTCCATGGCCAT 60.773 63.158 14.09 14.09 35.26 4.40
1096 1164 2.367377 CCTCCTCCTCCATGGCCA 60.367 66.667 8.56 8.56 35.26 5.36
1097 1165 2.040464 TCCTCCTCCTCCATGGCC 60.040 66.667 6.96 0.00 35.26 5.36
1098 1166 0.473501 ATCTCCTCCTCCTCCATGGC 60.474 60.000 6.96 0.00 35.26 4.40
1208 1288 1.456705 GAGCCGGGACAGGATCTCT 60.457 63.158 2.18 0.00 42.97 3.10
1787 1882 0.955428 CCACAACGTGCAGCATACCT 60.955 55.000 0.00 0.00 31.34 3.08
1848 1943 0.466189 AAGGCCACCAACACAGTCTG 60.466 55.000 5.01 0.00 0.00 3.51
1857 1952 1.228831 CCATGTCCAAGGCCACCAA 60.229 57.895 5.01 0.00 0.00 3.67
1866 1961 1.139498 TCCTTGCCCTCCATGTCCAA 61.139 55.000 0.00 0.00 0.00 3.53
2043 2138 5.532406 GCTGTTTATCATAATCCTCAAGGCA 59.468 40.000 0.00 0.00 34.44 4.75
2319 2423 0.471191 TAGTGCCCATCTGCATCTGG 59.529 55.000 7.55 7.55 44.30 3.86
2365 2469 9.857656 ATACATGATTATTCCATTGACAAGAGT 57.142 29.630 0.00 0.00 0.00 3.24
2369 2473 9.187996 ACACATACATGATTATTCCATTGACAA 57.812 29.630 0.00 0.00 0.00 3.18
2370 2474 8.750515 ACACATACATGATTATTCCATTGACA 57.249 30.769 0.00 0.00 0.00 3.58
2431 2536 1.515521 GCCCCACGGAACAAAGTGAG 61.516 60.000 0.00 0.00 40.56 3.51
2443 2548 5.850614 ACAGTAGTATAATTTAGCCCCACG 58.149 41.667 0.00 0.00 0.00 4.94
2725 3120 6.165577 GGTAACCGTTAGTTTATCACCTGAA 58.834 40.000 0.00 0.00 40.05 3.02
2854 3249 3.790126 ACCCCCTGTGCAAAATTCTTAT 58.210 40.909 0.00 0.00 0.00 1.73
2865 3260 1.903404 CCTGTCAAACCCCCTGTGC 60.903 63.158 0.00 0.00 0.00 4.57
2866 3261 0.106217 AACCTGTCAAACCCCCTGTG 60.106 55.000 0.00 0.00 0.00 3.66
2867 3262 0.106217 CAACCTGTCAAACCCCCTGT 60.106 55.000 0.00 0.00 0.00 4.00
2868 3263 0.184933 TCAACCTGTCAAACCCCCTG 59.815 55.000 0.00 0.00 0.00 4.45
2869 3264 0.930726 TTCAACCTGTCAAACCCCCT 59.069 50.000 0.00 0.00 0.00 4.79
2870 3265 1.328279 CTTCAACCTGTCAAACCCCC 58.672 55.000 0.00 0.00 0.00 5.40
2907 3318 6.070656 TGTCCTTTTTGAATGGAGATCAGTT 58.929 36.000 0.00 0.00 35.61 3.16
2909 3320 5.709164 ACTGTCCTTTTTGAATGGAGATCAG 59.291 40.000 0.00 8.73 35.61 2.90
2912 3323 8.477419 TTTTACTGTCCTTTTTGAATGGAGAT 57.523 30.769 0.00 0.00 35.61 2.75
2951 3367 9.336171 TGAATATGTGGTCGAAATTATCATGAA 57.664 29.630 0.00 0.00 0.00 2.57
2952 3368 8.773645 GTGAATATGTGGTCGAAATTATCATGA 58.226 33.333 0.00 0.00 0.00 3.07
2958 3374 7.873719 AATGGTGAATATGTGGTCGAAATTA 57.126 32.000 0.00 0.00 0.00 1.40
2964 3380 6.859420 TCATTAATGGTGAATATGTGGTCG 57.141 37.500 15.36 0.00 0.00 4.79
2965 3381 9.467258 CAATTCATTAATGGTGAATATGTGGTC 57.533 33.333 15.36 0.00 43.49 4.02
2966 3382 8.980596 ACAATTCATTAATGGTGAATATGTGGT 58.019 29.630 15.36 2.11 43.49 4.16
2967 3383 9.820725 AACAATTCATTAATGGTGAATATGTGG 57.179 29.630 15.36 1.61 43.49 4.17
2974 3390 8.748412 CCCTTCTAACAATTCATTAATGGTGAA 58.252 33.333 15.36 4.10 39.65 3.18
2975 3391 7.341769 CCCCTTCTAACAATTCATTAATGGTGA 59.658 37.037 15.36 2.97 29.22 4.02
2976 3392 7.341769 TCCCCTTCTAACAATTCATTAATGGTG 59.658 37.037 15.36 12.82 29.22 4.17
2977 3393 7.418378 TCCCCTTCTAACAATTCATTAATGGT 58.582 34.615 15.36 2.63 29.94 3.55
2978 3394 7.896383 TCCCCTTCTAACAATTCATTAATGG 57.104 36.000 15.36 1.99 0.00 3.16
2979 3395 7.869429 GCATCCCCTTCTAACAATTCATTAATG 59.131 37.037 9.29 9.29 0.00 1.90
2980 3396 7.786464 AGCATCCCCTTCTAACAATTCATTAAT 59.214 33.333 0.00 0.00 0.00 1.40
2981 3397 7.125391 AGCATCCCCTTCTAACAATTCATTAA 58.875 34.615 0.00 0.00 0.00 1.40
2982 3398 6.672593 AGCATCCCCTTCTAACAATTCATTA 58.327 36.000 0.00 0.00 0.00 1.90
2983 3399 5.522641 AGCATCCCCTTCTAACAATTCATT 58.477 37.500 0.00 0.00 0.00 2.57
2984 3400 5.103771 AGAGCATCCCCTTCTAACAATTCAT 60.104 40.000 0.00 0.00 33.66 2.57
2985 3401 4.228210 AGAGCATCCCCTTCTAACAATTCA 59.772 41.667 0.00 0.00 33.66 2.57
2986 3402 4.786425 AGAGCATCCCCTTCTAACAATTC 58.214 43.478 0.00 0.00 33.66 2.17
2987 3403 4.228210 TGAGAGCATCCCCTTCTAACAATT 59.772 41.667 0.00 0.00 33.66 2.32
2988 3404 3.782523 TGAGAGCATCCCCTTCTAACAAT 59.217 43.478 0.00 0.00 33.66 2.71
2989 3405 3.055094 GTGAGAGCATCCCCTTCTAACAA 60.055 47.826 0.00 0.00 33.66 2.83
2990 3406 2.501723 GTGAGAGCATCCCCTTCTAACA 59.498 50.000 0.00 0.00 33.66 2.41
2991 3407 2.769095 AGTGAGAGCATCCCCTTCTAAC 59.231 50.000 0.00 0.00 33.66 2.34
2992 3408 3.121929 AGTGAGAGCATCCCCTTCTAA 57.878 47.619 0.00 0.00 33.66 2.10
2993 3409 2.856760 AGTGAGAGCATCCCCTTCTA 57.143 50.000 0.00 0.00 33.66 2.10
2994 3410 1.836802 GAAGTGAGAGCATCCCCTTCT 59.163 52.381 9.40 0.00 34.45 2.85
2995 3411 1.836802 AGAAGTGAGAGCATCCCCTTC 59.163 52.381 8.94 8.94 36.14 3.46
2996 3412 1.963985 AGAAGTGAGAGCATCCCCTT 58.036 50.000 0.00 0.00 33.66 3.95
2997 3413 1.963985 AAGAAGTGAGAGCATCCCCT 58.036 50.000 0.00 0.00 33.66 4.79
2998 3414 4.429854 AATAAGAAGTGAGAGCATCCCC 57.570 45.455 0.00 0.00 33.66 4.81
2999 3415 7.279758 GCATATAATAAGAAGTGAGAGCATCCC 59.720 40.741 0.00 0.00 33.66 3.85
3000 3416 7.279758 GGCATATAATAAGAAGTGAGAGCATCC 59.720 40.741 0.00 0.00 33.66 3.51
3001 3417 8.040132 AGGCATATAATAAGAAGTGAGAGCATC 58.960 37.037 0.00 0.00 0.00 3.91
3002 3418 7.915930 AGGCATATAATAAGAAGTGAGAGCAT 58.084 34.615 0.00 0.00 0.00 3.79
3003 3419 7.308450 AGGCATATAATAAGAAGTGAGAGCA 57.692 36.000 0.00 0.00 0.00 4.26
3004 3420 9.364989 CTTAGGCATATAATAAGAAGTGAGAGC 57.635 37.037 0.00 0.00 0.00 4.09
3005 3421 9.868277 CCTTAGGCATATAATAAGAAGTGAGAG 57.132 37.037 0.00 0.00 0.00 3.20
3025 3441 5.934402 TTCTTTCTACTGGTAGCCTTAGG 57.066 43.478 0.00 0.00 33.32 2.69
3026 3442 7.334671 CCTTTTTCTTTCTACTGGTAGCCTTAG 59.665 40.741 3.13 0.00 33.32 2.18
3027 3443 7.016858 TCCTTTTTCTTTCTACTGGTAGCCTTA 59.983 37.037 3.13 0.00 33.32 2.69
3028 3444 6.004574 CCTTTTTCTTTCTACTGGTAGCCTT 58.995 40.000 3.13 0.00 33.32 4.35
3029 3445 5.309806 TCCTTTTTCTTTCTACTGGTAGCCT 59.690 40.000 3.13 0.00 33.32 4.58
3030 3446 5.557866 TCCTTTTTCTTTCTACTGGTAGCC 58.442 41.667 3.13 0.00 33.32 3.93
3031 3447 7.506328 TTTCCTTTTTCTTTCTACTGGTAGC 57.494 36.000 3.13 0.00 33.32 3.58
3032 3448 8.731605 GGATTTCCTTTTTCTTTCTACTGGTAG 58.268 37.037 1.65 1.65 34.56 3.18
3033 3449 8.445588 AGGATTTCCTTTTTCTTTCTACTGGTA 58.554 33.333 0.00 0.00 46.09 3.25
3034 3450 7.298374 AGGATTTCCTTTTTCTTTCTACTGGT 58.702 34.615 0.00 0.00 46.09 4.00
3035 3451 7.767250 AGGATTTCCTTTTTCTTTCTACTGG 57.233 36.000 0.00 0.00 46.09 4.00
3051 3467 9.020731 TCATTACTTCCTAAACAAAGGATTTCC 57.979 33.333 0.00 0.00 45.14 3.13
3053 3469 9.807921 TCTCATTACTTCCTAAACAAAGGATTT 57.192 29.630 0.00 0.00 45.14 2.17
3054 3470 9.807921 TTCTCATTACTTCCTAAACAAAGGATT 57.192 29.630 0.00 0.00 45.14 3.01
3055 3471 9.981460 ATTCTCATTACTTCCTAAACAAAGGAT 57.019 29.630 0.00 0.00 45.14 3.24
3056 3472 9.449719 GATTCTCATTACTTCCTAAACAAAGGA 57.550 33.333 0.00 0.00 44.12 3.36
3057 3473 9.454859 AGATTCTCATTACTTCCTAAACAAAGG 57.545 33.333 0.00 0.00 38.06 3.11
3059 3475 9.231297 CCAGATTCTCATTACTTCCTAAACAAA 57.769 33.333 0.00 0.00 0.00 2.83
3060 3476 8.383175 ACCAGATTCTCATTACTTCCTAAACAA 58.617 33.333 0.00 0.00 0.00 2.83
3061 3477 7.824289 CACCAGATTCTCATTACTTCCTAAACA 59.176 37.037 0.00 0.00 0.00 2.83
3062 3478 7.201652 GCACCAGATTCTCATTACTTCCTAAAC 60.202 40.741 0.00 0.00 0.00 2.01
3063 3479 6.823689 GCACCAGATTCTCATTACTTCCTAAA 59.176 38.462 0.00 0.00 0.00 1.85
3064 3480 6.070251 TGCACCAGATTCTCATTACTTCCTAA 60.070 38.462 0.00 0.00 0.00 2.69
3065 3481 5.425217 TGCACCAGATTCTCATTACTTCCTA 59.575 40.000 0.00 0.00 0.00 2.94
3066 3482 4.225942 TGCACCAGATTCTCATTACTTCCT 59.774 41.667 0.00 0.00 0.00 3.36
3067 3483 4.517285 TGCACCAGATTCTCATTACTTCC 58.483 43.478 0.00 0.00 0.00 3.46
3068 3484 4.574013 CCTGCACCAGATTCTCATTACTTC 59.426 45.833 0.00 0.00 32.44 3.01
3069 3485 4.521146 CCTGCACCAGATTCTCATTACTT 58.479 43.478 0.00 0.00 32.44 2.24
3070 3486 3.118112 CCCTGCACCAGATTCTCATTACT 60.118 47.826 0.00 0.00 32.44 2.24
3071 3487 3.209410 CCCTGCACCAGATTCTCATTAC 58.791 50.000 0.00 0.00 32.44 1.89
3072 3488 2.173356 CCCCTGCACCAGATTCTCATTA 59.827 50.000 0.00 0.00 32.44 1.90
3073 3489 1.064166 CCCCTGCACCAGATTCTCATT 60.064 52.381 0.00 0.00 32.44 2.57
3074 3490 0.549950 CCCCTGCACCAGATTCTCAT 59.450 55.000 0.00 0.00 32.44 2.90
3075 3491 1.565390 CCCCCTGCACCAGATTCTCA 61.565 60.000 0.00 0.00 32.44 3.27
3076 3492 1.225704 CCCCCTGCACCAGATTCTC 59.774 63.158 0.00 0.00 32.44 2.87
3077 3493 0.625683 ATCCCCCTGCACCAGATTCT 60.626 55.000 0.00 0.00 32.44 2.40
3078 3494 1.140312 TATCCCCCTGCACCAGATTC 58.860 55.000 0.00 0.00 32.44 2.52
3079 3495 1.607225 TTATCCCCCTGCACCAGATT 58.393 50.000 0.00 0.00 32.44 2.40
3080 3496 1.496429 CTTTATCCCCCTGCACCAGAT 59.504 52.381 0.00 0.00 32.44 2.90
3081 3497 0.918983 CTTTATCCCCCTGCACCAGA 59.081 55.000 0.00 0.00 32.44 3.86
3082 3498 0.918983 TCTTTATCCCCCTGCACCAG 59.081 55.000 0.00 0.00 0.00 4.00
3083 3499 0.623723 GTCTTTATCCCCCTGCACCA 59.376 55.000 0.00 0.00 0.00 4.17
3084 3500 0.106669 GGTCTTTATCCCCCTGCACC 60.107 60.000 0.00 0.00 0.00 5.01
3085 3501 0.919710 AGGTCTTTATCCCCCTGCAC 59.080 55.000 0.00 0.00 0.00 4.57
3086 3502 1.681229 AAGGTCTTTATCCCCCTGCA 58.319 50.000 0.00 0.00 0.00 4.41
3087 3503 2.828661 AAAGGTCTTTATCCCCCTGC 57.171 50.000 0.00 0.00 0.00 4.85
3116 3532 9.866655 AATTCTTATGAAAGGAAGTGGCATATA 57.133 29.630 0.00 0.00 35.63 0.86
3117 3533 8.773033 AATTCTTATGAAAGGAAGTGGCATAT 57.227 30.769 0.00 0.00 35.63 1.78
3118 3534 8.469200 CAAATTCTTATGAAAGGAAGTGGCATA 58.531 33.333 0.00 0.00 35.63 3.14
3119 3535 7.038799 ACAAATTCTTATGAAAGGAAGTGGCAT 60.039 33.333 0.00 0.00 35.63 4.40
3120 3536 6.267471 ACAAATTCTTATGAAAGGAAGTGGCA 59.733 34.615 0.00 0.00 35.63 4.92
3121 3537 6.691508 ACAAATTCTTATGAAAGGAAGTGGC 58.308 36.000 0.00 0.00 35.63 5.01
3122 3538 8.981647 CAAACAAATTCTTATGAAAGGAAGTGG 58.018 33.333 0.00 0.00 35.63 4.00
3123 3539 8.981647 CCAAACAAATTCTTATGAAAGGAAGTG 58.018 33.333 0.00 0.00 35.63 3.16
3124 3540 8.704668 ACCAAACAAATTCTTATGAAAGGAAGT 58.295 29.630 0.00 0.00 35.63 3.01
3125 3541 9.196552 GACCAAACAAATTCTTATGAAAGGAAG 57.803 33.333 0.00 0.00 35.63 3.46
3126 3542 8.147704 GGACCAAACAAATTCTTATGAAAGGAA 58.852 33.333 0.00 0.00 35.63 3.36
3127 3543 7.508977 AGGACCAAACAAATTCTTATGAAAGGA 59.491 33.333 0.00 0.00 35.63 3.36
3128 3544 7.670364 AGGACCAAACAAATTCTTATGAAAGG 58.330 34.615 0.00 0.00 35.63 3.11
3129 3545 9.196552 GAAGGACCAAACAAATTCTTATGAAAG 57.803 33.333 0.00 0.00 35.63 2.62
3130 3546 8.923270 AGAAGGACCAAACAAATTCTTATGAAA 58.077 29.630 0.00 0.00 35.63 2.69
3131 3547 8.359642 CAGAAGGACCAAACAAATTCTTATGAA 58.640 33.333 0.00 0.00 36.54 2.57
3132 3548 7.723616 TCAGAAGGACCAAACAAATTCTTATGA 59.276 33.333 0.00 0.00 31.44 2.15
3133 3549 7.885297 TCAGAAGGACCAAACAAATTCTTATG 58.115 34.615 0.00 0.00 0.00 1.90
3134 3550 8.477419 TTCAGAAGGACCAAACAAATTCTTAT 57.523 30.769 0.00 0.00 0.00 1.73
3135 3551 7.889873 TTCAGAAGGACCAAACAAATTCTTA 57.110 32.000 0.00 0.00 0.00 2.10
3136 3552 6.790232 TTCAGAAGGACCAAACAAATTCTT 57.210 33.333 0.00 0.00 0.00 2.52
3137 3553 6.324770 ACATTCAGAAGGACCAAACAAATTCT 59.675 34.615 0.81 0.00 0.00 2.40
3138 3554 6.515832 ACATTCAGAAGGACCAAACAAATTC 58.484 36.000 0.81 0.00 0.00 2.17
3139 3555 6.324770 AGACATTCAGAAGGACCAAACAAATT 59.675 34.615 0.81 0.00 0.00 1.82
3140 3556 5.835280 AGACATTCAGAAGGACCAAACAAAT 59.165 36.000 0.81 0.00 0.00 2.32
3141 3557 5.200483 AGACATTCAGAAGGACCAAACAAA 58.800 37.500 0.81 0.00 0.00 2.83
3142 3558 4.792068 AGACATTCAGAAGGACCAAACAA 58.208 39.130 0.81 0.00 0.00 2.83
3143 3559 4.437682 AGACATTCAGAAGGACCAAACA 57.562 40.909 0.81 0.00 0.00 2.83
3144 3560 6.710744 TCTTTAGACATTCAGAAGGACCAAAC 59.289 38.462 0.81 0.00 0.00 2.93
3145 3561 6.837312 TCTTTAGACATTCAGAAGGACCAAA 58.163 36.000 0.81 0.00 0.00 3.28
3146 3562 6.433847 TCTTTAGACATTCAGAAGGACCAA 57.566 37.500 0.81 0.00 0.00 3.67
3147 3563 6.433847 TTCTTTAGACATTCAGAAGGACCA 57.566 37.500 0.81 0.00 0.00 4.02
3148 3564 9.620259 AATATTCTTTAGACATTCAGAAGGACC 57.380 33.333 0.81 0.00 0.00 4.46
3172 3588 9.986157 AGATTGCATATCAATATCCAAGGTAAT 57.014 29.630 10.26 0.00 44.95 1.89
3173 3589 9.234827 CAGATTGCATATCAATATCCAAGGTAA 57.765 33.333 10.26 0.00 44.95 2.85
3174 3590 8.385491 ACAGATTGCATATCAATATCCAAGGTA 58.615 33.333 10.26 0.00 44.95 3.08
3175 3591 7.236529 ACAGATTGCATATCAATATCCAAGGT 58.763 34.615 10.26 0.00 44.95 3.50
3176 3592 7.698506 ACAGATTGCATATCAATATCCAAGG 57.301 36.000 10.26 0.00 44.95 3.61
3177 3593 9.976511 AAAACAGATTGCATATCAATATCCAAG 57.023 29.630 10.26 0.00 44.95 3.61
3204 3620 8.912988 TCCAACAACTCTTTGTCTAAATCATTT 58.087 29.630 0.00 0.00 45.69 2.32
3205 3621 8.463930 TCCAACAACTCTTTGTCTAAATCATT 57.536 30.769 0.00 0.00 45.69 2.57
3206 3622 8.641498 ATCCAACAACTCTTTGTCTAAATCAT 57.359 30.769 0.00 0.00 45.69 2.45
3207 3623 9.219603 CTATCCAACAACTCTTTGTCTAAATCA 57.780 33.333 0.00 0.00 45.69 2.57
3208 3624 9.436957 TCTATCCAACAACTCTTTGTCTAAATC 57.563 33.333 0.00 0.00 45.69 2.17
3209 3625 9.793259 TTCTATCCAACAACTCTTTGTCTAAAT 57.207 29.630 0.00 0.00 45.69 1.40
3210 3626 9.621629 TTTCTATCCAACAACTCTTTGTCTAAA 57.378 29.630 0.00 0.00 45.69 1.85
3211 3627 9.793259 ATTTCTATCCAACAACTCTTTGTCTAA 57.207 29.630 0.00 0.00 45.69 2.10
3212 3628 9.793259 AATTTCTATCCAACAACTCTTTGTCTA 57.207 29.630 0.00 0.00 45.69 2.59
3213 3629 8.697507 AATTTCTATCCAACAACTCTTTGTCT 57.302 30.769 0.00 0.00 45.69 3.41
3214 3630 9.750125 AAAATTTCTATCCAACAACTCTTTGTC 57.250 29.630 0.00 0.00 45.69 3.18
3242 3658 9.921637 AAACAGACACTCTAATTTCTTCTAGAG 57.078 33.333 4.88 4.88 44.51 2.43
3246 3662 9.482627 CTGTAAACAGACACTCTAATTTCTTCT 57.517 33.333 3.99 0.00 46.59 2.85
3247 3663 9.262358 ACTGTAAACAGACACTCTAATTTCTTC 57.738 33.333 16.74 0.00 46.59 2.87
3254 3670 9.472361 GTTTCATACTGTAAACAGACACTCTAA 57.528 33.333 16.74 0.38 46.59 2.10
3255 3671 8.635328 TGTTTCATACTGTAAACAGACACTCTA 58.365 33.333 16.74 0.00 46.59 2.43
3256 3672 7.497595 TGTTTCATACTGTAAACAGACACTCT 58.502 34.615 16.74 0.00 46.59 3.24
3257 3673 7.709269 TGTTTCATACTGTAAACAGACACTC 57.291 36.000 16.74 2.46 46.59 3.51
3258 3674 9.772973 TTATGTTTCATACTGTAAACAGACACT 57.227 29.630 16.74 0.00 45.74 3.55
3259 3675 9.807386 GTTATGTTTCATACTGTAAACAGACAC 57.193 33.333 16.74 6.01 45.74 3.67
3260 3676 9.549078 TGTTATGTTTCATACTGTAAACAGACA 57.451 29.630 16.74 15.31 45.74 3.41
3261 3677 9.807386 GTGTTATGTTTCATACTGTAAACAGAC 57.193 33.333 16.74 12.03 45.74 3.51
3262 3678 9.772973 AGTGTTATGTTTCATACTGTAAACAGA 57.227 29.630 16.74 5.91 45.74 3.41
3263 3679 9.811655 CAGTGTTATGTTTCATACTGTAAACAG 57.188 33.333 8.56 8.56 45.74 3.16
3264 3680 8.286800 GCAGTGTTATGTTTCATACTGTAAACA 58.713 33.333 9.14 9.14 46.37 2.83
3265 3681 8.504005 AGCAGTGTTATGTTTCATACTGTAAAC 58.496 33.333 0.00 0.00 38.17 2.01
3266 3682 8.615878 AGCAGTGTTATGTTTCATACTGTAAA 57.384 30.769 0.00 0.00 38.17 2.01
3267 3683 9.366216 CTAGCAGTGTTATGTTTCATACTGTAA 57.634 33.333 0.00 0.00 38.17 2.41
3268 3684 7.491372 GCTAGCAGTGTTATGTTTCATACTGTA 59.509 37.037 10.63 0.00 38.17 2.74
3269 3685 6.313905 GCTAGCAGTGTTATGTTTCATACTGT 59.686 38.462 10.63 0.00 38.17 3.55
3270 3686 6.313658 TGCTAGCAGTGTTATGTTTCATACTG 59.686 38.462 14.93 0.00 38.74 2.74
3271 3687 6.406370 TGCTAGCAGTGTTATGTTTCATACT 58.594 36.000 14.93 0.00 0.00 2.12
3272 3688 6.662414 TGCTAGCAGTGTTATGTTTCATAC 57.338 37.500 14.93 0.00 0.00 2.39
3273 3689 6.652900 TGTTGCTAGCAGTGTTATGTTTCATA 59.347 34.615 18.45 0.00 0.00 2.15
3274 3690 5.473162 TGTTGCTAGCAGTGTTATGTTTCAT 59.527 36.000 18.45 0.00 0.00 2.57
3275 3691 4.819088 TGTTGCTAGCAGTGTTATGTTTCA 59.181 37.500 18.45 0.00 0.00 2.69
3276 3692 5.179368 TCTGTTGCTAGCAGTGTTATGTTTC 59.821 40.000 18.45 0.00 35.60 2.78
3277 3693 5.063204 TCTGTTGCTAGCAGTGTTATGTTT 58.937 37.500 18.45 0.00 35.60 2.83
3278 3694 4.641396 TCTGTTGCTAGCAGTGTTATGTT 58.359 39.130 18.45 0.00 35.60 2.71
3279 3695 4.248859 CTCTGTTGCTAGCAGTGTTATGT 58.751 43.478 18.45 0.00 35.60 2.29
3280 3696 4.248859 ACTCTGTTGCTAGCAGTGTTATG 58.751 43.478 18.45 8.76 37.38 1.90
3281 3697 4.543590 ACTCTGTTGCTAGCAGTGTTAT 57.456 40.909 18.45 1.08 37.38 1.89
3282 3698 4.336889 AACTCTGTTGCTAGCAGTGTTA 57.663 40.909 18.45 0.00 44.00 2.41
3283 3699 2.918712 ACTCTGTTGCTAGCAGTGTT 57.081 45.000 18.45 0.00 37.38 3.32
3284 3700 2.918712 AACTCTGTTGCTAGCAGTGT 57.081 45.000 18.45 10.60 40.86 3.55
3285 3701 5.409520 TGATAAAACTCTGTTGCTAGCAGTG 59.590 40.000 18.45 11.86 35.60 3.66
3286 3702 5.551233 TGATAAAACTCTGTTGCTAGCAGT 58.449 37.500 18.45 9.18 35.60 4.40
3287 3703 5.447010 GCTGATAAAACTCTGTTGCTAGCAG 60.447 44.000 18.45 8.47 35.43 4.24
3288 3704 4.393062 GCTGATAAAACTCTGTTGCTAGCA 59.607 41.667 14.93 14.93 0.00 3.49
3289 3705 4.393062 TGCTGATAAAACTCTGTTGCTAGC 59.607 41.667 8.10 8.10 0.00 3.42
3290 3706 5.641209 AGTGCTGATAAAACTCTGTTGCTAG 59.359 40.000 0.00 0.00 0.00 3.42
3291 3707 5.551233 AGTGCTGATAAAACTCTGTTGCTA 58.449 37.500 0.00 0.00 0.00 3.49
3292 3708 4.392940 AGTGCTGATAAAACTCTGTTGCT 58.607 39.130 0.00 0.00 0.00 3.91
3293 3709 4.756084 AGTGCTGATAAAACTCTGTTGC 57.244 40.909 0.00 0.00 0.00 4.17
3294 3710 5.009010 ACCAAGTGCTGATAAAACTCTGTTG 59.991 40.000 0.00 0.00 0.00 3.33
3295 3711 5.009010 CACCAAGTGCTGATAAAACTCTGTT 59.991 40.000 0.00 0.00 0.00 3.16
3296 3712 4.516698 CACCAAGTGCTGATAAAACTCTGT 59.483 41.667 0.00 0.00 0.00 3.41
3297 3713 4.083110 CCACCAAGTGCTGATAAAACTCTG 60.083 45.833 0.00 0.00 31.34 3.35
3298 3714 4.074970 CCACCAAGTGCTGATAAAACTCT 58.925 43.478 0.00 0.00 31.34 3.24
3299 3715 3.191371 CCCACCAAGTGCTGATAAAACTC 59.809 47.826 0.00 0.00 31.34 3.01
3300 3716 3.157087 CCCACCAAGTGCTGATAAAACT 58.843 45.455 0.00 0.00 31.34 2.66
3301 3717 3.057526 GTCCCACCAAGTGCTGATAAAAC 60.058 47.826 0.00 0.00 31.34 2.43
3302 3718 3.153919 GTCCCACCAAGTGCTGATAAAA 58.846 45.455 0.00 0.00 31.34 1.52
3303 3719 2.375174 AGTCCCACCAAGTGCTGATAAA 59.625 45.455 0.00 0.00 31.34 1.40
3304 3720 1.985159 AGTCCCACCAAGTGCTGATAA 59.015 47.619 0.00 0.00 31.34 1.75
3305 3721 1.656587 AGTCCCACCAAGTGCTGATA 58.343 50.000 0.00 0.00 31.34 2.15
3306 3722 0.773644 AAGTCCCACCAAGTGCTGAT 59.226 50.000 0.00 0.00 31.34 2.90
3307 3723 1.429930 TAAGTCCCACCAAGTGCTGA 58.570 50.000 0.00 0.00 31.34 4.26
3308 3724 2.496899 ATAAGTCCCACCAAGTGCTG 57.503 50.000 0.00 0.00 31.34 4.41
3309 3725 4.567747 CCTTAATAAGTCCCACCAAGTGCT 60.568 45.833 0.00 0.00 31.34 4.40
3310 3726 3.694566 CCTTAATAAGTCCCACCAAGTGC 59.305 47.826 0.00 0.00 31.34 4.40
3311 3727 4.270008 CCCTTAATAAGTCCCACCAAGTG 58.730 47.826 0.00 0.00 0.00 3.16
3312 3728 3.268595 CCCCTTAATAAGTCCCACCAAGT 59.731 47.826 0.00 0.00 0.00 3.16
3313 3729 3.268595 ACCCCTTAATAAGTCCCACCAAG 59.731 47.826 0.00 0.00 0.00 3.61
3314 3730 3.010808 CACCCCTTAATAAGTCCCACCAA 59.989 47.826 0.00 0.00 0.00 3.67
3315 3731 2.578940 CACCCCTTAATAAGTCCCACCA 59.421 50.000 0.00 0.00 0.00 4.17
3316 3732 2.848071 TCACCCCTTAATAAGTCCCACC 59.152 50.000 0.00 0.00 0.00 4.61
3317 3733 4.412528 AGATCACCCCTTAATAAGTCCCAC 59.587 45.833 0.00 0.00 0.00 4.61
3318 3734 4.641868 AGATCACCCCTTAATAAGTCCCA 58.358 43.478 0.00 0.00 0.00 4.37
3319 3735 5.648330 AAGATCACCCCTTAATAAGTCCC 57.352 43.478 0.00 0.00 0.00 4.46
3320 3736 8.272889 ACTAAAAGATCACCCCTTAATAAGTCC 58.727 37.037 0.00 0.00 0.00 3.85
3321 3737 9.682465 AACTAAAAGATCACCCCTTAATAAGTC 57.318 33.333 0.00 0.00 0.00 3.01
3322 3738 9.682465 GAACTAAAAGATCACCCCTTAATAAGT 57.318 33.333 0.00 0.00 0.00 2.24
3323 3739 9.907229 AGAACTAAAAGATCACCCCTTAATAAG 57.093 33.333 0.00 0.00 0.00 1.73
3324 3740 9.901172 GAGAACTAAAAGATCACCCCTTAATAA 57.099 33.333 0.00 0.00 0.00 1.40
3325 3741 9.280456 AGAGAACTAAAAGATCACCCCTTAATA 57.720 33.333 0.00 0.00 0.00 0.98
3326 3742 8.164057 AGAGAACTAAAAGATCACCCCTTAAT 57.836 34.615 0.00 0.00 0.00 1.40
3327 3743 7.569599 AGAGAACTAAAAGATCACCCCTTAA 57.430 36.000 0.00 0.00 0.00 1.85
3328 3744 7.569599 AAGAGAACTAAAAGATCACCCCTTA 57.430 36.000 0.00 0.00 0.00 2.69
3329 3745 6.455690 AAGAGAACTAAAAGATCACCCCTT 57.544 37.500 0.00 0.00 0.00 3.95
3330 3746 6.044404 TGAAAGAGAACTAAAAGATCACCCCT 59.956 38.462 0.00 0.00 0.00 4.79
3331 3747 6.238648 TGAAAGAGAACTAAAAGATCACCCC 58.761 40.000 0.00 0.00 0.00 4.95
3332 3748 6.372937 CCTGAAAGAGAACTAAAAGATCACCC 59.627 42.308 0.00 0.00 34.07 4.61
3333 3749 7.162082 TCCTGAAAGAGAACTAAAAGATCACC 58.838 38.462 0.00 0.00 34.07 4.02
3334 3750 8.785329 ATCCTGAAAGAGAACTAAAAGATCAC 57.215 34.615 0.00 0.00 34.07 3.06
3335 3751 9.799106 AAATCCTGAAAGAGAACTAAAAGATCA 57.201 29.630 0.00 0.00 34.07 2.92
3353 3769 9.919416 TCCAATTTGTTATCATAGAAATCCTGA 57.081 29.630 0.00 0.00 0.00 3.86
3364 3780 9.646522 ACCTAGCTAAATCCAATTTGTTATCAT 57.353 29.630 0.00 0.00 33.82 2.45
3365 3781 9.474313 AACCTAGCTAAATCCAATTTGTTATCA 57.526 29.630 0.00 0.00 33.82 2.15
3366 3782 9.952188 GAACCTAGCTAAATCCAATTTGTTATC 57.048 33.333 0.00 0.00 33.82 1.75
3367 3783 9.474313 TGAACCTAGCTAAATCCAATTTGTTAT 57.526 29.630 0.00 0.00 33.82 1.89
3368 3784 8.871629 TGAACCTAGCTAAATCCAATTTGTTA 57.128 30.769 0.00 0.00 33.82 2.41
3369 3785 7.775053 TGAACCTAGCTAAATCCAATTTGTT 57.225 32.000 0.00 0.00 33.82 2.83
3370 3786 7.775053 TTGAACCTAGCTAAATCCAATTTGT 57.225 32.000 0.00 0.00 33.82 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.