Multiple sequence alignment - TraesCS1D01G007100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G007100 chr1D 100.000 4070 0 0 1 4070 3474536 3470467 0.000000e+00 7516.0
1 TraesCS1D01G007100 chr1D 92.605 1190 78 4 869 2052 4635203 4636388 0.000000e+00 1701.0
2 TraesCS1D01G007100 chr1D 94.843 543 25 1 2675 3214 4636812 4637354 0.000000e+00 845.0
3 TraesCS1D01G007100 chr1D 90.190 316 23 4 217 527 4632048 4632360 4.900000e-109 405.0
4 TraesCS1D01G007100 chr1D 96.450 169 5 1 2053 2220 4636646 4636814 1.110000e-70 278.0
5 TraesCS1D01G007100 chr1D 87.097 217 25 3 1 216 4631648 4631862 4.060000e-60 243.0
6 TraesCS1D01G007100 chr1D 90.805 87 8 0 565 651 4632360 4632446 2.570000e-22 117.0
7 TraesCS1D01G007100 chr1D 100.000 31 0 0 2198 2228 4636663 4636693 1.580000e-04 58.4
8 TraesCS1D01G007100 chrUn 93.562 1165 64 4 1397 2559 76614590 76615745 0.000000e+00 1725.0
9 TraesCS1D01G007100 chrUn 93.333 975 59 6 2876 3848 76615846 76616816 0.000000e+00 1435.0
10 TraesCS1D01G007100 chrUn 91.287 505 40 2 869 1370 76613968 76614471 0.000000e+00 686.0
11 TraesCS1D01G007100 chrUn 90.249 441 34 5 217 652 76612083 76612519 5.900000e-158 568.0
12 TraesCS1D01G007100 chrUn 93.878 49 3 0 230 278 47880382 47880430 1.570000e-09 75.0
13 TraesCS1D01G007100 chr1B 86.585 492 53 9 2635 3118 6747898 6748384 7.750000e-147 531.0
14 TraesCS1D01G007100 chr1B 91.758 182 13 1 688 867 423945380 423945561 6.750000e-63 252.0
15 TraesCS1D01G007100 chr3A 91.935 186 14 1 682 866 456442168 456441983 4.040000e-65 259.0
16 TraesCS1D01G007100 chr2B 92.350 183 13 1 679 860 202905918 202906100 4.040000e-65 259.0
17 TraesCS1D01G007100 chr2B 91.071 56 4 1 230 285 135236672 135236726 1.570000e-09 75.0
18 TraesCS1D01G007100 chr6A 91.398 186 15 1 682 866 537871707 537871892 1.880000e-63 254.0
19 TraesCS1D01G007100 chr4B 92.222 180 13 1 688 866 7476246 7476425 1.880000e-63 254.0
20 TraesCS1D01G007100 chr4A 91.667 180 14 1 688 866 743762437 743762258 8.740000e-62 248.0
21 TraesCS1D01G007100 chr3B 92.529 174 12 1 688 860 24818125 24818298 8.740000e-62 248.0
22 TraesCS1D01G007100 chr3B 90.909 55 4 1 229 282 749311100 749311154 5.640000e-09 73.1
23 TraesCS1D01G007100 chr5A 90.811 185 16 1 684 867 42698882 42699066 3.140000e-61 246.0
24 TraesCS1D01G007100 chr6D 91.160 181 15 1 688 867 11574513 11574693 1.130000e-60 244.0
25 TraesCS1D01G007100 chr6D 91.489 47 4 0 229 275 472904056 472904102 9.440000e-07 65.8
26 TraesCS1D01G007100 chr5B 90.909 55 4 1 229 283 470276531 470276584 5.640000e-09 73.1
27 TraesCS1D01G007100 chr5B 92.000 50 4 0 229 278 347975570 347975521 2.030000e-08 71.3
28 TraesCS1D01G007100 chr7B 93.617 47 3 0 229 275 744317753 744317799 2.030000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G007100 chr1D 3470467 3474536 4069 True 7516.000000 7516 100.000000 1 4070 1 chr1D.!!$R1 4069
1 TraesCS1D01G007100 chr1D 4631648 4637354 5706 False 521.057143 1701 93.141429 1 3214 7 chr1D.!!$F1 3213
2 TraesCS1D01G007100 chrUn 76612083 76616816 4733 False 1103.500000 1725 92.107750 217 3848 4 chrUn.!!$F2 3631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
750 2134 0.035439 AGGCAACGTGTAGGATTGGG 60.035 55.0 0.0 0.0 46.39 4.12 F
1296 4122 0.035317 TCTTGCTCGTCACCATTGCT 59.965 50.0 0.0 0.0 0.00 3.91 F
1966 4884 0.258774 ACTTTGTTGGGGAGCACAGT 59.741 50.0 0.0 0.0 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 4875 0.034616 AGTTGCTCTGACTGTGCTCC 59.965 55.0 7.72 0.0 36.27 4.70 R
2260 5436 0.394216 TGACATGCCCACTATGGTGC 60.394 55.0 3.19 0.0 41.75 5.01 R
3855 7037 0.031857 CAATGTGCCCGTGCTCAAAA 59.968 50.0 0.00 0.0 43.51 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.791327 AACTCTTTTGTTTCATCAAACCAATT 57.209 26.923 0.00 0.00 41.25 2.32
71 72 2.221055 GTCTCCAACGTGTGTTTAGCAG 59.779 50.000 0.00 0.00 35.72 4.24
82 83 6.148811 ACGTGTGTTTAGCAGCTACAATTAAT 59.851 34.615 0.00 0.00 0.00 1.40
102 103 1.176527 AATGTGGCCAACAGGAATCG 58.823 50.000 7.24 0.00 43.64 3.34
108 109 1.876156 GGCCAACAGGAATCGATCATC 59.124 52.381 0.00 0.00 0.00 2.92
119 120 2.208326 TCGATCATCGACCATGTGTG 57.792 50.000 5.39 0.00 44.82 3.82
120 121 1.202405 TCGATCATCGACCATGTGTGG 60.202 52.381 5.39 0.00 44.82 4.17
121 122 3.528227 TCGATCATCGACCATGTGTGGA 61.528 50.000 5.39 0.00 45.56 4.02
122 123 4.809614 TCGATCATCGACCATGTGTGGAT 61.810 47.826 5.39 6.17 45.56 3.41
131 132 2.624316 CATGTGTGGATGCAGAACAC 57.376 50.000 17.80 17.80 43.57 3.32
133 134 2.275134 TGTGTGGATGCAGAACACAT 57.725 45.000 21.50 0.00 46.81 3.21
141 142 0.890542 TGCAGAACACATGCCTGTCC 60.891 55.000 0.00 0.00 43.18 4.02
145 146 1.228552 AACACATGCCTGTCCACCC 60.229 57.895 0.00 0.00 31.62 4.61
186 187 6.884295 TGTTCTTTGTAAAGCATAGCCTACAT 59.116 34.615 0.00 0.00 35.99 2.29
208 209 7.081976 ACATTATTTTACTCCACTTTCAACGC 58.918 34.615 0.00 0.00 0.00 4.84
210 211 5.767816 ATTTTACTCCACTTTCAACGCTT 57.232 34.783 0.00 0.00 0.00 4.68
230 416 5.402398 GCTTAAATTGACCTTGTTAGCCTG 58.598 41.667 0.00 0.00 0.00 4.85
307 493 5.930569 ACCGAAATCTAGTGACCAAAGTAAC 59.069 40.000 0.00 0.00 0.00 2.50
390 581 6.987404 GGGTGAACTAGAAAGATCTTCATACC 59.013 42.308 8.78 8.73 37.10 2.73
402 593 2.203139 CATACCATCGGCCGCCAA 60.203 61.111 23.51 3.06 0.00 4.52
411 602 0.523966 TCGGCCGCCAAAACAATTAG 59.476 50.000 23.51 0.00 0.00 1.73
463 654 0.532115 ATGCCGGCAAAAGTCATTCC 59.468 50.000 36.33 0.00 0.00 3.01
486 677 2.800736 GGCACGCTAAATGGCCAG 59.199 61.111 13.05 0.00 45.70 4.85
527 756 2.177580 CACGTGTTTGCTCGGGTGT 61.178 57.895 7.58 0.00 36.10 4.16
529 758 1.010125 CGTGTTTGCTCGGGTGTTG 60.010 57.895 0.00 0.00 0.00 3.33
530 759 1.711060 CGTGTTTGCTCGGGTGTTGT 61.711 55.000 0.00 0.00 0.00 3.32
531 760 1.301423 GTGTTTGCTCGGGTGTTGTA 58.699 50.000 0.00 0.00 0.00 2.41
532 761 1.263217 GTGTTTGCTCGGGTGTTGTAG 59.737 52.381 0.00 0.00 0.00 2.74
533 762 1.134340 TGTTTGCTCGGGTGTTGTAGT 60.134 47.619 0.00 0.00 0.00 2.73
534 763 2.102757 TGTTTGCTCGGGTGTTGTAGTA 59.897 45.455 0.00 0.00 0.00 1.82
535 764 3.132925 GTTTGCTCGGGTGTTGTAGTAA 58.867 45.455 0.00 0.00 0.00 2.24
536 765 2.443887 TGCTCGGGTGTTGTAGTAAC 57.556 50.000 0.00 0.00 0.00 2.50
537 766 1.687660 TGCTCGGGTGTTGTAGTAACA 59.312 47.619 0.00 0.00 0.00 2.41
547 776 5.728351 TGTTGTAGTAACACAGTGCTTTC 57.272 39.130 0.00 0.00 34.61 2.62
548 777 5.424757 TGTTGTAGTAACACAGTGCTTTCT 58.575 37.500 0.00 1.04 34.61 2.52
549 778 5.293324 TGTTGTAGTAACACAGTGCTTTCTG 59.707 40.000 0.00 0.00 40.80 3.02
550 779 3.807622 TGTAGTAACACAGTGCTTTCTGC 59.192 43.478 0.00 2.78 38.84 4.26
551 780 2.222027 AGTAACACAGTGCTTTCTGCC 58.778 47.619 0.00 0.00 42.00 4.85
552 781 1.946768 GTAACACAGTGCTTTCTGCCA 59.053 47.619 0.00 0.00 42.00 4.92
553 782 1.027357 AACACAGTGCTTTCTGCCAG 58.973 50.000 0.00 0.00 42.00 4.85
554 783 0.820891 ACACAGTGCTTTCTGCCAGG 60.821 55.000 0.00 0.00 42.00 4.45
555 784 1.900498 ACAGTGCTTTCTGCCAGGC 60.900 57.895 3.66 3.66 42.00 4.85
556 785 1.900016 CAGTGCTTTCTGCCAGGCA 60.900 57.895 15.23 15.23 42.00 4.75
557 786 1.152694 AGTGCTTTCTGCCAGGCAA 60.153 52.632 17.03 3.77 38.41 4.52
558 787 0.756442 AGTGCTTTCTGCCAGGCAAA 60.756 50.000 17.03 7.01 38.41 3.68
559 788 0.598419 GTGCTTTCTGCCAGGCAAAC 60.598 55.000 17.03 3.77 38.41 2.93
560 789 1.005748 GCTTTCTGCCAGGCAAACC 60.006 57.895 17.03 0.00 38.41 3.27
562 791 4.736307 TGCTTTCTGCCAGGCAAACCTA 62.736 50.000 17.03 0.00 42.96 3.08
610 839 2.838202 TCCGGAAGCTACTTTCCTTCAT 59.162 45.455 0.00 0.00 43.64 2.57
614 843 4.568760 CGGAAGCTACTTTCCTTCATCTTC 59.431 45.833 0.83 0.00 43.64 2.87
619 848 6.639563 AGCTACTTTCCTTCATCTTCTTCTC 58.360 40.000 0.00 0.00 0.00 2.87
621 850 6.312672 GCTACTTTCCTTCATCTTCTTCTCAC 59.687 42.308 0.00 0.00 0.00 3.51
622 851 6.432403 ACTTTCCTTCATCTTCTTCTCACT 57.568 37.500 0.00 0.00 0.00 3.41
628 857 1.392853 CATCTTCTTCTCACTGCGTGC 59.607 52.381 4.15 0.00 32.98 5.34
642 871 1.592081 TGCGTGCTTTCATTTTTGTGC 59.408 42.857 0.00 0.00 0.00 4.57
652 881 1.518102 CATTTTTGTGCTCACGTGTGC 59.482 47.619 30.24 30.24 35.32 4.57
653 882 0.523519 TTTTTGTGCTCACGTGTGCA 59.476 45.000 34.25 34.25 41.53 4.57
659 888 2.337170 CTCACGTGTGCACCGGTA 59.663 61.111 24.76 14.62 0.00 4.02
660 889 1.733041 CTCACGTGTGCACCGGTAG 60.733 63.158 24.76 18.55 0.00 3.18
661 890 3.411351 CACGTGTGCACCGGTAGC 61.411 66.667 24.76 14.59 0.00 3.58
662 891 4.675029 ACGTGTGCACCGGTAGCC 62.675 66.667 24.76 14.71 0.00 3.93
664 893 4.323477 GTGTGCACCGGTAGCCCA 62.323 66.667 21.23 15.56 0.00 5.36
665 894 4.323477 TGTGCACCGGTAGCCCAC 62.323 66.667 21.23 18.40 0.00 4.61
666 895 4.323477 GTGCACCGGTAGCCCACA 62.323 66.667 21.23 6.14 0.00 4.17
667 896 3.326578 TGCACCGGTAGCCCACAT 61.327 61.111 21.23 0.00 0.00 3.21
668 897 2.513897 GCACCGGTAGCCCACATC 60.514 66.667 6.87 0.00 0.00 3.06
669 898 2.986290 CACCGGTAGCCCACATCA 59.014 61.111 6.87 0.00 0.00 3.07
670 899 1.298340 CACCGGTAGCCCACATCAA 59.702 57.895 6.87 0.00 0.00 2.57
671 900 1.024579 CACCGGTAGCCCACATCAAC 61.025 60.000 6.87 0.00 0.00 3.18
672 901 1.813753 CCGGTAGCCCACATCAACG 60.814 63.158 0.00 0.00 0.00 4.10
673 902 1.079405 CGGTAGCCCACATCAACGT 60.079 57.895 0.00 0.00 0.00 3.99
674 903 1.082117 CGGTAGCCCACATCAACGTC 61.082 60.000 0.00 0.00 0.00 4.34
675 904 0.743345 GGTAGCCCACATCAACGTCC 60.743 60.000 0.00 0.00 0.00 4.79
677 906 0.249120 TAGCCCACATCAACGTCCAG 59.751 55.000 0.00 0.00 0.00 3.86
679 908 0.036765 GCCCACATCAACGTCCAGTA 60.037 55.000 0.00 0.00 0.00 2.74
680 909 1.406887 GCCCACATCAACGTCCAGTAT 60.407 52.381 0.00 0.00 0.00 2.12
683 912 4.509616 CCCACATCAACGTCCAGTATAAA 58.490 43.478 0.00 0.00 0.00 1.40
684 913 4.938832 CCCACATCAACGTCCAGTATAAAA 59.061 41.667 0.00 0.00 0.00 1.52
685 914 5.064707 CCCACATCAACGTCCAGTATAAAAG 59.935 44.000 0.00 0.00 0.00 2.27
686 915 5.642063 CCACATCAACGTCCAGTATAAAAGT 59.358 40.000 0.00 0.00 0.00 2.66
687 916 6.402118 CCACATCAACGTCCAGTATAAAAGTG 60.402 42.308 0.00 0.00 0.00 3.16
688 917 5.121768 ACATCAACGTCCAGTATAAAAGTGC 59.878 40.000 0.00 0.00 0.00 4.40
689 918 4.633175 TCAACGTCCAGTATAAAAGTGCA 58.367 39.130 0.00 0.00 0.00 4.57
691 920 5.703592 TCAACGTCCAGTATAAAAGTGCAAT 59.296 36.000 0.00 0.00 0.00 3.56
692 921 5.545658 ACGTCCAGTATAAAAGTGCAATG 57.454 39.130 0.00 0.00 0.00 2.82
693 922 4.142687 ACGTCCAGTATAAAAGTGCAATGC 60.143 41.667 0.00 0.00 0.00 3.56
694 923 4.094887 CGTCCAGTATAAAAGTGCAATGCT 59.905 41.667 6.82 0.00 0.00 3.79
696 925 6.487103 GTCCAGTATAAAAGTGCAATGCTAC 58.513 40.000 6.82 3.21 0.00 3.58
698 927 6.093495 TCCAGTATAAAAGTGCAATGCTACAC 59.907 38.462 6.82 0.00 37.05 2.90
699 928 6.258160 CAGTATAAAAGTGCAATGCTACACC 58.742 40.000 6.82 0.00 37.51 4.16
702 931 6.683974 ATAAAAGTGCAATGCTACACCTAG 57.316 37.500 6.82 0.00 37.51 3.02
703 932 2.698855 AGTGCAATGCTACACCTAGG 57.301 50.000 7.41 7.41 37.51 3.02
705 934 2.571653 AGTGCAATGCTACACCTAGGAA 59.428 45.455 17.98 0.00 37.51 3.36
706 935 3.009033 AGTGCAATGCTACACCTAGGAAA 59.991 43.478 17.98 0.00 37.51 3.13
707 936 3.756434 GTGCAATGCTACACCTAGGAAAA 59.244 43.478 17.98 0.00 0.00 2.29
708 937 4.009675 TGCAATGCTACACCTAGGAAAAG 58.990 43.478 17.98 10.03 0.00 2.27
709 938 4.010349 GCAATGCTACACCTAGGAAAAGT 58.990 43.478 17.98 10.65 0.00 2.66
710 939 4.459337 GCAATGCTACACCTAGGAAAAGTT 59.541 41.667 17.98 0.00 0.00 2.66
711 940 5.646360 GCAATGCTACACCTAGGAAAAGTTA 59.354 40.000 17.98 3.65 0.00 2.24
712 941 6.150474 GCAATGCTACACCTAGGAAAAGTTAA 59.850 38.462 17.98 0.61 0.00 2.01
713 942 7.626452 GCAATGCTACACCTAGGAAAAGTTAAG 60.626 40.741 17.98 5.06 0.00 1.85
727 1570 9.551734 AGGAAAAGTTAAGTACAGAATTTACGT 57.448 29.630 0.00 0.00 0.00 3.57
733 1576 9.415544 AGTTAAGTACAGAATTTACGTAACAGG 57.584 33.333 18.47 0.00 42.26 4.00
734 1577 6.716898 AAGTACAGAATTTACGTAACAGGC 57.283 37.500 7.70 0.00 0.00 4.85
744 2128 1.065358 CGTAACAGGCAACGTGTAGG 58.935 55.000 0.00 0.00 46.39 3.18
746 2130 2.673043 CGTAACAGGCAACGTGTAGGAT 60.673 50.000 0.00 0.00 46.39 3.24
748 2132 1.808411 ACAGGCAACGTGTAGGATTG 58.192 50.000 0.00 0.00 46.39 2.67
750 2134 0.035439 AGGCAACGTGTAGGATTGGG 60.035 55.000 0.00 0.00 46.39 4.12
760 2144 3.138283 GTGTAGGATTGGGATTGGATGGA 59.862 47.826 0.00 0.00 0.00 3.41
761 2145 3.790976 TGTAGGATTGGGATTGGATGGAA 59.209 43.478 0.00 0.00 0.00 3.53
762 2146 3.607490 AGGATTGGGATTGGATGGAAG 57.393 47.619 0.00 0.00 0.00 3.46
763 2147 2.178544 AGGATTGGGATTGGATGGAAGG 59.821 50.000 0.00 0.00 0.00 3.46
764 2148 2.601905 GATTGGGATTGGATGGAAGGG 58.398 52.381 0.00 0.00 0.00 3.95
765 2149 1.392407 TTGGGATTGGATGGAAGGGT 58.608 50.000 0.00 0.00 0.00 4.34
766 2150 0.630673 TGGGATTGGATGGAAGGGTG 59.369 55.000 0.00 0.00 0.00 4.61
769 2153 1.686115 GGATTGGATGGAAGGGTGTGG 60.686 57.143 0.00 0.00 0.00 4.17
770 2154 0.324645 ATTGGATGGAAGGGTGTGGC 60.325 55.000 0.00 0.00 0.00 5.01
773 2157 1.379044 GATGGAAGGGTGTGGCAGG 60.379 63.158 0.00 0.00 0.00 4.85
774 2158 2.843912 GATGGAAGGGTGTGGCAGGG 62.844 65.000 0.00 0.00 0.00 4.45
775 2159 4.366684 GGAAGGGTGTGGCAGGGG 62.367 72.222 0.00 0.00 0.00 4.79
789 2173 4.041762 GGGGCCCACACGGATGAA 62.042 66.667 26.86 0.00 0.00 2.57
791 2175 1.605165 GGGCCCACACGGATGAAAA 60.605 57.895 19.95 0.00 0.00 2.29
793 2177 0.455815 GGCCCACACGGATGAAAATC 59.544 55.000 0.00 0.00 0.00 2.17
794 2178 1.173043 GCCCACACGGATGAAAATCA 58.827 50.000 0.00 0.00 0.00 2.57
796 2180 1.745087 CCCACACGGATGAAAATCAGG 59.255 52.381 0.00 0.00 0.00 3.86
798 2182 1.745087 CACACGGATGAAAATCAGGGG 59.255 52.381 0.00 0.00 0.00 4.79
799 2183 1.340991 ACACGGATGAAAATCAGGGGG 60.341 52.381 0.00 0.00 0.00 5.40
818 2202 2.486548 GGGGCGATAGATTTGTTAGGCA 60.487 50.000 0.00 0.00 39.76 4.75
819 2203 2.808543 GGGCGATAGATTTGTTAGGCAG 59.191 50.000 0.00 0.00 39.76 4.85
820 2204 2.808543 GGCGATAGATTTGTTAGGCAGG 59.191 50.000 0.00 0.00 39.76 4.85
821 2205 3.467803 GCGATAGATTTGTTAGGCAGGT 58.532 45.455 0.00 0.00 39.76 4.00
823 2207 5.054477 GCGATAGATTTGTTAGGCAGGTTA 58.946 41.667 0.00 0.00 39.76 2.85
824 2208 5.050295 GCGATAGATTTGTTAGGCAGGTTAC 60.050 44.000 0.00 0.00 39.76 2.50
825 2209 5.175126 CGATAGATTTGTTAGGCAGGTTACG 59.825 44.000 0.00 0.00 39.76 3.18
827 2211 5.410355 AGATTTGTTAGGCAGGTTACGTA 57.590 39.130 0.00 0.00 0.00 3.57
828 2212 5.797051 AGATTTGTTAGGCAGGTTACGTAA 58.203 37.500 3.29 3.29 0.00 3.18
829 2213 5.640783 AGATTTGTTAGGCAGGTTACGTAAC 59.359 40.000 26.72 26.72 38.33 2.50
830 2214 4.605640 TTGTTAGGCAGGTTACGTAACT 57.394 40.909 31.35 17.64 38.53 2.24
831 2215 4.178545 TGTTAGGCAGGTTACGTAACTC 57.821 45.455 31.35 22.79 38.53 3.01
833 2217 4.281688 TGTTAGGCAGGTTACGTAACTCTT 59.718 41.667 31.35 20.63 38.53 2.85
834 2218 3.589495 AGGCAGGTTACGTAACTCTTC 57.411 47.619 31.35 21.70 36.47 2.87
835 2219 2.094854 AGGCAGGTTACGTAACTCTTCG 60.095 50.000 31.35 18.45 36.47 3.79
836 2220 2.352127 GGCAGGTTACGTAACTCTTCGT 60.352 50.000 31.35 9.77 42.82 3.85
841 2225 4.213482 AGGTTACGTAACTCTTCGTACGTT 59.787 41.667 31.35 4.17 45.30 3.99
842 2226 4.318332 GGTTACGTAACTCTTCGTACGTTG 59.682 45.833 31.35 9.37 45.30 4.10
843 2227 2.310577 ACGTAACTCTTCGTACGTTGC 58.689 47.619 16.05 4.44 45.30 4.17
844 2228 2.031682 ACGTAACTCTTCGTACGTTGCT 60.032 45.455 16.05 0.00 45.30 3.91
845 2229 2.975851 CGTAACTCTTCGTACGTTGCTT 59.024 45.455 16.05 4.44 0.00 3.91
846 2230 3.423206 CGTAACTCTTCGTACGTTGCTTT 59.577 43.478 16.05 7.21 0.00 3.51
847 2231 4.430830 CGTAACTCTTCGTACGTTGCTTTC 60.431 45.833 16.05 1.00 0.00 2.62
851 2235 3.228749 TCTTCGTACGTTGCTTTCGTAG 58.771 45.455 16.05 0.00 42.88 3.51
854 2238 1.384409 CGTACGTTGCTTTCGTAGGTG 59.616 52.381 7.22 5.24 42.88 4.00
855 2239 2.397549 GTACGTTGCTTTCGTAGGTGT 58.602 47.619 0.00 0.00 42.88 4.16
859 2243 3.253188 ACGTTGCTTTCGTAGGTGTAGTA 59.747 43.478 0.30 0.00 39.78 1.82
860 2244 4.229096 CGTTGCTTTCGTAGGTGTAGTAA 58.771 43.478 0.00 0.00 0.00 2.24
861 2245 4.860907 CGTTGCTTTCGTAGGTGTAGTAAT 59.139 41.667 0.00 0.00 0.00 1.89
864 2248 7.221452 CGTTGCTTTCGTAGGTGTAGTAATATT 59.779 37.037 0.00 0.00 0.00 1.28
865 2249 7.997107 TGCTTTCGTAGGTGTAGTAATATTG 57.003 36.000 0.00 0.00 0.00 1.90
866 2250 7.774134 TGCTTTCGTAGGTGTAGTAATATTGA 58.226 34.615 0.00 0.00 0.00 2.57
867 2251 7.919091 TGCTTTCGTAGGTGTAGTAATATTGAG 59.081 37.037 0.00 0.00 0.00 3.02
892 3715 0.613777 AATGAGTGGAGAACCGGACC 59.386 55.000 9.46 6.63 39.42 4.46
893 3716 0.544357 ATGAGTGGAGAACCGGACCA 60.544 55.000 9.46 9.47 39.42 4.02
894 3717 0.761323 TGAGTGGAGAACCGGACCAA 60.761 55.000 9.46 0.00 39.42 3.67
895 3718 0.395312 GAGTGGAGAACCGGACCAAA 59.605 55.000 9.46 0.00 39.42 3.28
907 3730 1.742750 CGGACCAAAAGCTAGCTACCC 60.743 57.143 19.70 11.52 0.00 3.69
910 3733 1.429148 CCAAAAGCTAGCTACCCGCG 61.429 60.000 19.70 0.00 45.59 6.46
911 3734 1.153429 AAAAGCTAGCTACCCGCGG 60.153 57.895 21.04 21.04 45.59 6.46
979 3805 5.009410 AGTGAAAGAAGTGAATTGAAGCCAG 59.991 40.000 0.00 0.00 0.00 4.85
990 3816 1.266178 TGAAGCCAGAATCCGTCTCA 58.734 50.000 0.00 0.00 32.70 3.27
996 3822 0.176680 CAGAATCCGTCTCAGGGGTG 59.823 60.000 0.00 0.00 32.70 4.61
1230 4056 4.659172 CTGCAGCCCCGGGTGAAA 62.659 66.667 21.85 3.29 45.42 2.69
1296 4122 0.035317 TCTTGCTCGTCACCATTGCT 59.965 50.000 0.00 0.00 0.00 3.91
1328 4154 0.671251 GTCTCCTATCCTGCCGTCAG 59.329 60.000 0.00 0.00 40.02 3.51
1329 4155 0.259065 TCTCCTATCCTGCCGTCAGT 59.741 55.000 0.00 0.00 38.66 3.41
1372 4198 9.613428 ACATAAAAAGACTACATATGCTTGCTA 57.387 29.630 1.58 0.00 0.00 3.49
1425 4343 0.806868 CCATTTGCTGTGTGCTCGAT 59.193 50.000 0.00 0.00 43.37 3.59
1437 4355 2.664185 CTCGATGGGCAGATGGCG 60.664 66.667 0.00 0.00 46.16 5.69
1542 4460 1.688772 GCTACTGGATCCACCGTCTA 58.311 55.000 11.44 0.00 42.61 2.59
1549 4467 0.525668 GATCCACCGTCTACTGCACG 60.526 60.000 0.00 0.00 36.99 5.34
1695 4613 1.819903 TCCATTGTGCCATGTCACATG 59.180 47.619 10.83 11.18 45.26 3.21
1766 4684 3.417069 CCACAGTGGGTAAAGTCATCA 57.583 47.619 12.40 0.00 32.67 3.07
1791 4709 5.571285 TCTCAGCTCTTAGTCTTACCTTCA 58.429 41.667 0.00 0.00 0.00 3.02
1832 4750 6.019075 CGATGCAACAATCTTCTTACGGATTA 60.019 38.462 0.00 0.00 31.86 1.75
1855 4773 6.882458 AAGAATTACCTCGTAAACATCGAC 57.118 37.500 0.00 0.00 31.56 4.20
1862 4780 3.561503 CTCGTAAACATCGACTGTGTCA 58.438 45.455 0.00 0.00 38.39 3.58
1870 4788 0.317854 TCGACTGTGTCAGAACTGCG 60.318 55.000 3.70 0.00 35.18 5.18
1957 4875 2.742053 CGACTACCATCACTTTGTTGGG 59.258 50.000 7.92 0.00 40.62 4.12
1966 4884 0.258774 ACTTTGTTGGGGAGCACAGT 59.741 50.000 0.00 0.00 0.00 3.55
2155 5331 4.108570 TGTTTCAGGGATACAGGTACCAT 58.891 43.478 15.94 4.10 39.74 3.55
2228 5404 4.470304 ACCTCACATTCCTTACTAGTTCCC 59.530 45.833 0.00 0.00 0.00 3.97
2230 5406 5.416271 TCACATTCCTTACTAGTTCCCAC 57.584 43.478 0.00 0.00 0.00 4.61
2231 5407 5.091552 TCACATTCCTTACTAGTTCCCACT 58.908 41.667 0.00 0.00 36.99 4.00
2260 5436 9.435688 TCCATAATTTCATCATATTCCGTACTG 57.564 33.333 0.00 0.00 0.00 2.74
2263 5439 5.984233 TTTCATCATATTCCGTACTGCAC 57.016 39.130 0.00 0.00 0.00 4.57
2284 5460 2.159393 CCATAGTGGGCATGTCAAAACG 60.159 50.000 0.00 0.00 32.67 3.60
2288 5464 0.466372 TGGGCATGTCAAAACGTGGA 60.466 50.000 0.00 0.00 41.81 4.02
2293 5469 3.003897 GGCATGTCAAAACGTGGACTTTA 59.996 43.478 14.04 0.00 41.81 1.85
2301 5477 5.292589 TCAAAACGTGGACTTTAGAACAGAC 59.707 40.000 0.00 0.00 0.00 3.51
2326 5502 6.938542 GTTCTCACGATTTTTATCTGCCTAG 58.061 40.000 0.00 0.00 0.00 3.02
2328 5504 6.273825 TCTCACGATTTTTATCTGCCTAGTC 58.726 40.000 0.00 0.00 0.00 2.59
2341 5517 4.020751 TCTGCCTAGTCAATCCTGATATGC 60.021 45.833 0.00 0.00 33.05 3.14
2342 5518 3.008375 TGCCTAGTCAATCCTGATATGCC 59.992 47.826 0.00 0.00 33.05 4.40
2353 5529 5.628797 TCCTGATATGCCAGAATTGTGTA 57.371 39.130 1.49 0.00 36.29 2.90
2432 5609 4.153986 GCACATGAATCTTTCTTGACACG 58.846 43.478 0.00 0.00 38.00 4.49
2444 5621 4.794278 TCTTGACACGAGCTAAATGGTA 57.206 40.909 0.00 0.00 0.00 3.25
2455 5632 3.052036 GCTAAATGGTAATGCATTGCGG 58.948 45.455 22.27 8.14 0.00 5.69
2505 5682 8.085909 GCTTAAATGTTTGTACCACCATAGTTT 58.914 33.333 0.00 0.00 0.00 2.66
2513 5690 7.589958 TTGTACCACCATAGTTTGTGAATTT 57.410 32.000 0.00 0.00 34.37 1.82
2523 5700 8.011106 CCATAGTTTGTGAATTTGTGAAAATGC 58.989 33.333 0.00 0.00 0.00 3.56
2559 5736 9.421806 TCTCAAAATATGCAAAATCGAAACAAT 57.578 25.926 0.00 0.00 0.00 2.71
2569 5746 9.753669 TGCAAAATCGAAACAATATATATAGCG 57.246 29.630 0.00 0.00 0.00 4.26
2570 5747 9.967245 GCAAAATCGAAACAATATATATAGCGA 57.033 29.630 0.00 2.46 0.00 4.93
2576 5753 9.396938 TCGAAACAATATATATAGCGAAACGAA 57.603 29.630 0.00 0.00 0.00 3.85
2590 5767 7.772332 AGCGAAACGAAAACTATTATCTCAT 57.228 32.000 0.00 0.00 0.00 2.90
2593 5770 8.753175 GCGAAACGAAAACTATTATCTCATACT 58.247 33.333 0.00 0.00 0.00 2.12
2597 5774 7.668492 ACGAAAACTATTATCTCATACTCCCC 58.332 38.462 0.00 0.00 0.00 4.81
2599 5776 7.038941 CGAAAACTATTATCTCATACTCCCCCT 60.039 40.741 0.00 0.00 0.00 4.79
2601 5778 5.844601 ACTATTATCTCATACTCCCCCTCC 58.155 45.833 0.00 0.00 0.00 4.30
2602 5779 4.785173 ATTATCTCATACTCCCCCTCCA 57.215 45.455 0.00 0.00 0.00 3.86
2604 5781 2.961536 TCTCATACTCCCCCTCCAAA 57.038 50.000 0.00 0.00 0.00 3.28
2605 5782 3.438131 TCTCATACTCCCCCTCCAAAT 57.562 47.619 0.00 0.00 0.00 2.32
2606 5783 3.048600 TCTCATACTCCCCCTCCAAATG 58.951 50.000 0.00 0.00 0.00 2.32
2608 5785 3.459598 CTCATACTCCCCCTCCAAATGAA 59.540 47.826 0.00 0.00 0.00 2.57
2610 5787 4.293634 TCATACTCCCCCTCCAAATGAAAA 59.706 41.667 0.00 0.00 0.00 2.29
2611 5788 2.889512 ACTCCCCCTCCAAATGAAAAC 58.110 47.619 0.00 0.00 0.00 2.43
2612 5789 2.450886 ACTCCCCCTCCAAATGAAAACT 59.549 45.455 0.00 0.00 0.00 2.66
2614 5791 4.294970 ACTCCCCCTCCAAATGAAAACTAT 59.705 41.667 0.00 0.00 0.00 2.12
2615 5792 5.222547 ACTCCCCCTCCAAATGAAAACTATT 60.223 40.000 0.00 0.00 0.00 1.73
2616 5793 6.011096 ACTCCCCCTCCAAATGAAAACTATTA 60.011 38.462 0.00 0.00 0.00 0.98
2617 5794 6.992235 TCCCCCTCCAAATGAAAACTATTAT 58.008 36.000 0.00 0.00 0.00 1.28
2618 5795 7.066781 TCCCCCTCCAAATGAAAACTATTATC 58.933 38.462 0.00 0.00 0.00 1.75
2619 5796 7.069344 CCCCCTCCAAATGAAAACTATTATCT 58.931 38.462 0.00 0.00 0.00 1.98
2620 5797 7.231519 CCCCCTCCAAATGAAAACTATTATCTC 59.768 40.741 0.00 0.00 0.00 2.75
2622 5799 9.359653 CCCTCCAAATGAAAACTATTATCTCAT 57.640 33.333 0.00 0.00 0.00 2.90
2630 5807 7.974504 TGAAAACTATTATCTCATACTCCCCC 58.025 38.462 0.00 0.00 0.00 5.40
2631 5808 7.794683 TGAAAACTATTATCTCATACTCCCCCT 59.205 37.037 0.00 0.00 0.00 4.79
2632 5809 7.800300 AAACTATTATCTCATACTCCCCCTC 57.200 40.000 0.00 0.00 0.00 4.30
2633 5810 5.844601 ACTATTATCTCATACTCCCCCTCC 58.155 45.833 0.00 0.00 0.00 4.30
2634 5811 4.785173 ATTATCTCATACTCCCCCTCCA 57.215 45.455 0.00 0.00 0.00 3.86
2636 5813 2.961536 TCTCATACTCCCCCTCCAAA 57.038 50.000 0.00 0.00 0.00 3.28
2637 5814 3.438131 TCTCATACTCCCCCTCCAAAT 57.562 47.619 0.00 0.00 0.00 2.32
2638 5815 3.747852 TCTCATACTCCCCCTCCAAATT 58.252 45.455 0.00 0.00 0.00 1.82
2640 5817 5.486332 TCTCATACTCCCCCTCCAAATTAT 58.514 41.667 0.00 0.00 0.00 1.28
2641 5818 5.548056 TCTCATACTCCCCCTCCAAATTATC 59.452 44.000 0.00 0.00 0.00 1.75
2642 5819 5.486332 TCATACTCCCCCTCCAAATTATCT 58.514 41.667 0.00 0.00 0.00 1.98
2643 5820 5.310594 TCATACTCCCCCTCCAAATTATCTG 59.689 44.000 0.00 0.00 0.00 2.90
2645 5822 1.499007 TCCCCCTCCAAATTATCTGGC 59.501 52.381 0.00 0.00 33.63 4.85
2646 5823 1.217689 CCCCCTCCAAATTATCTGGCA 59.782 52.381 0.00 0.00 33.63 4.92
2648 5825 3.373830 CCCCTCCAAATTATCTGGCAAA 58.626 45.455 0.00 0.00 33.63 3.68
2649 5826 3.969312 CCCCTCCAAATTATCTGGCAAAT 59.031 43.478 0.00 0.00 33.63 2.32
2650 5827 4.409901 CCCCTCCAAATTATCTGGCAAATT 59.590 41.667 0.00 0.00 33.63 1.82
2651 5828 5.362263 CCCTCCAAATTATCTGGCAAATTG 58.638 41.667 0.00 0.00 33.63 2.32
2652 5829 5.104817 CCCTCCAAATTATCTGGCAAATTGT 60.105 40.000 0.00 0.00 33.63 2.71
2653 5830 6.408869 CCTCCAAATTATCTGGCAAATTGTT 58.591 36.000 0.00 0.00 33.63 2.83
2655 5832 7.391275 CCTCCAAATTATCTGGCAAATTGTTTT 59.609 33.333 0.00 0.00 33.63 2.43
2657 5834 8.782144 TCCAAATTATCTGGCAAATTGTTTTTC 58.218 29.630 0.00 0.00 33.63 2.29
2664 5841 8.962884 ATCTGGCAAATTGTTTTTCTAAAACT 57.037 26.923 14.07 0.00 0.00 2.66
2665 5842 8.419076 TCTGGCAAATTGTTTTTCTAAAACTC 57.581 30.769 14.07 0.38 0.00 3.01
2666 5843 8.037758 TCTGGCAAATTGTTTTTCTAAAACTCA 58.962 29.630 14.07 4.12 0.00 3.41
2667 5844 8.553459 TGGCAAATTGTTTTTCTAAAACTCAA 57.447 26.923 14.07 9.54 31.56 3.02
2668 5845 9.003658 TGGCAAATTGTTTTTCTAAAACTCAAA 57.996 25.926 14.07 3.64 31.14 2.69
2669 5846 9.272901 GGCAAATTGTTTTTCTAAAACTCAAAC 57.727 29.630 14.07 0.00 31.14 2.93
2670 5847 9.818796 GCAAATTGTTTTTCTAAAACTCAAACA 57.181 25.926 14.07 0.00 35.94 2.83
2698 5875 6.698359 TGTGTTTGCTCAAGTTTTGTAAAC 57.302 33.333 9.87 9.87 34.26 2.01
2701 5878 7.224753 TGTGTTTGCTCAAGTTTTGTAAACAAA 59.775 29.630 16.78 12.05 43.36 2.83
2743 5920 8.678199 ACTTGGTCTTTGCTTTATCTATTAAGC 58.322 33.333 6.72 6.72 45.36 3.09
2762 5939 2.165437 AGCAAAACGAAAGCCTGTTTCA 59.835 40.909 0.00 0.00 37.31 2.69
2809 5986 5.351405 ACCCTTAGAAGAGGAGGTTGTATT 58.649 41.667 4.41 0.00 39.25 1.89
3093 6273 4.240888 CCACATCGACTATCTATGCTTGG 58.759 47.826 0.00 0.00 0.00 3.61
3183 6363 7.938563 TTTAAAATGTATGCCTTGTGACAAC 57.061 32.000 0.00 0.00 0.00 3.32
3310 6491 3.071892 ACGTTCCCACAAGGTTCTTATGA 59.928 43.478 0.00 0.00 36.75 2.15
3311 6492 3.684788 CGTTCCCACAAGGTTCTTATGAG 59.315 47.826 0.00 0.00 36.75 2.90
3334 6515 3.522553 GAACACATAAGGGAACTCTCGG 58.477 50.000 0.00 0.00 42.68 4.63
3377 6558 7.651027 AGCCTTGTATTCTTAATCAGCAAAT 57.349 32.000 0.00 0.00 0.00 2.32
3408 6589 5.105106 TGTTCAATACACGGTCTGGACATAT 60.105 40.000 3.10 0.00 0.00 1.78
3417 6598 3.552068 CGGTCTGGACATATATCAACGCA 60.552 47.826 3.10 0.00 0.00 5.24
3427 6608 5.799936 ACATATATCAACGCAAAAACACAGC 59.200 36.000 0.00 0.00 0.00 4.40
3437 6618 2.935849 CAAAAACACAGCCAAAAGTCCC 59.064 45.455 0.00 0.00 0.00 4.46
3453 6634 5.695424 AAGTCCCAGAATAGAACCCTAAC 57.305 43.478 0.00 0.00 0.00 2.34
3463 6644 7.655328 CAGAATAGAACCCTAACTAATGCTGAG 59.345 40.741 0.00 0.00 0.00 3.35
3465 6646 7.676683 ATAGAACCCTAACTAATGCTGAGAA 57.323 36.000 0.00 0.00 0.00 2.87
3536 6718 7.134815 GTGAATTGGATTATCTTTGATGTCCG 58.865 38.462 0.00 0.00 0.00 4.79
3544 6726 4.766404 ATCTTTGATGTCCGGTTGAAAC 57.234 40.909 0.00 0.00 0.00 2.78
3549 6731 2.616376 TGATGTCCGGTTGAAACTGTTG 59.384 45.455 0.00 0.00 33.38 3.33
3552 6734 2.162608 TGTCCGGTTGAAACTGTTGTTG 59.837 45.455 0.00 0.00 36.39 3.33
3564 6746 2.684881 ACTGTTGTTGCTCAAGAACCAG 59.315 45.455 16.58 15.27 42.00 4.00
3603 6785 4.414852 CATTAGCAATGTGGTTAGTGTGC 58.585 43.478 0.00 0.00 34.18 4.57
3605 6787 1.881973 AGCAATGTGGTTAGTGTGCAG 59.118 47.619 0.00 0.00 34.44 4.41
3636 6818 3.581755 GTGTGTACAATGACCTAGCGAA 58.418 45.455 0.00 0.00 0.00 4.70
3644 6826 1.170442 TGACCTAGCGAATGTCGACA 58.830 50.000 22.48 22.48 43.74 4.35
3661 6843 7.112528 TGTCGACATACATTAACAAAGTGAC 57.887 36.000 15.76 0.00 0.00 3.67
3706 6888 3.131709 AGAGTCATTGAGGTTGGTGTG 57.868 47.619 0.00 0.00 0.00 3.82
3707 6889 2.439507 AGAGTCATTGAGGTTGGTGTGT 59.560 45.455 0.00 0.00 0.00 3.72
3708 6890 3.117888 AGAGTCATTGAGGTTGGTGTGTT 60.118 43.478 0.00 0.00 0.00 3.32
3709 6891 3.214328 AGTCATTGAGGTTGGTGTGTTC 58.786 45.455 0.00 0.00 0.00 3.18
3710 6892 2.948979 GTCATTGAGGTTGGTGTGTTCA 59.051 45.455 0.00 0.00 0.00 3.18
3712 6894 1.388547 TTGAGGTTGGTGTGTTCAGC 58.611 50.000 0.00 0.00 41.77 4.26
3724 6906 0.546122 TGTTCAGCACTGGGAACACT 59.454 50.000 3.31 0.00 46.01 3.55
3767 6949 0.039074 CCCACGACACTCACAGTCTC 60.039 60.000 0.00 0.00 33.89 3.36
3788 6970 2.635427 CAGAGCCTTAATAGGTCCCTCC 59.365 54.545 0.00 0.00 44.00 4.30
3794 6976 2.267174 TAATAGGTCCCTCCGACGAG 57.733 55.000 0.00 0.00 42.99 4.18
3795 6977 0.258194 AATAGGTCCCTCCGACGAGT 59.742 55.000 0.00 0.00 42.99 4.18
3835 7017 1.127343 CCTTGGCTCTAGGAAGGGAG 58.873 60.000 0.00 0.00 34.56 4.30
3848 7030 0.252284 AAGGGAGTGAGTGACCGGAT 60.252 55.000 9.46 0.00 0.00 4.18
3849 7031 0.972983 AGGGAGTGAGTGACCGGATG 60.973 60.000 9.46 0.00 0.00 3.51
3850 7032 1.517832 GGAGTGAGTGACCGGATGG 59.482 63.158 9.46 0.00 42.84 3.51
3862 7044 0.804989 CCGGATGGTGACTTTTGAGC 59.195 55.000 0.00 0.00 0.00 4.26
3863 7045 1.522668 CGGATGGTGACTTTTGAGCA 58.477 50.000 0.00 0.00 0.00 4.26
3864 7046 1.197721 CGGATGGTGACTTTTGAGCAC 59.802 52.381 0.00 0.00 0.00 4.40
3865 7047 1.197721 GGATGGTGACTTTTGAGCACG 59.802 52.381 0.00 0.00 33.48 5.34
3866 7048 1.197721 GATGGTGACTTTTGAGCACGG 59.802 52.381 0.00 0.00 33.48 4.94
3867 7049 0.817634 TGGTGACTTTTGAGCACGGG 60.818 55.000 0.00 0.00 33.48 5.28
3868 7050 1.282875 GTGACTTTTGAGCACGGGC 59.717 57.895 0.00 0.00 41.61 6.13
3869 7051 1.153066 TGACTTTTGAGCACGGGCA 60.153 52.632 14.57 0.00 44.61 5.36
3870 7052 1.282875 GACTTTTGAGCACGGGCAC 59.717 57.895 14.57 6.16 44.61 5.01
3871 7053 1.444119 GACTTTTGAGCACGGGCACA 61.444 55.000 14.57 9.87 44.61 4.57
3872 7054 0.823356 ACTTTTGAGCACGGGCACAT 60.823 50.000 14.57 0.00 44.61 3.21
3873 7055 0.314935 CTTTTGAGCACGGGCACATT 59.685 50.000 14.57 0.00 44.61 2.71
3874 7056 0.031857 TTTTGAGCACGGGCACATTG 59.968 50.000 14.57 0.00 44.61 2.82
3875 7057 0.821301 TTTGAGCACGGGCACATTGA 60.821 50.000 14.57 0.00 44.61 2.57
3876 7058 1.236616 TTGAGCACGGGCACATTGAG 61.237 55.000 14.57 0.00 44.61 3.02
3877 7059 3.044059 GAGCACGGGCACATTGAGC 62.044 63.158 14.57 0.00 44.61 4.26
3883 7065 4.118584 GGCACATTGAGCCCCTTT 57.881 55.556 13.55 0.00 46.50 3.11
3884 7066 2.365410 GGCACATTGAGCCCCTTTT 58.635 52.632 13.55 0.00 46.50 2.27
3885 7067 0.686789 GGCACATTGAGCCCCTTTTT 59.313 50.000 13.55 0.00 46.50 1.94
3923 7105 5.904362 ATGGATTCTTACAACCAAAGAGC 57.096 39.130 0.00 0.00 34.59 4.09
3924 7106 4.724399 TGGATTCTTACAACCAAAGAGCA 58.276 39.130 0.00 0.00 34.59 4.26
3925 7107 5.324409 TGGATTCTTACAACCAAAGAGCAT 58.676 37.500 0.00 0.00 34.59 3.79
3926 7108 5.183713 TGGATTCTTACAACCAAAGAGCATG 59.816 40.000 0.00 0.00 34.59 4.06
3927 7109 4.503741 TTCTTACAACCAAAGAGCATGC 57.496 40.909 10.51 10.51 34.59 4.06
3928 7110 3.485394 TCTTACAACCAAAGAGCATGCA 58.515 40.909 21.98 0.00 0.00 3.96
3929 7111 4.081406 TCTTACAACCAAAGAGCATGCAT 58.919 39.130 21.98 4.82 0.00 3.96
3930 7112 2.736144 ACAACCAAAGAGCATGCATG 57.264 45.000 22.70 22.70 0.00 4.06
3950 7132 6.742999 CATGCATGCATATTTCACAAGTAC 57.257 37.500 31.73 0.00 34.91 2.73
3951 7133 6.500910 CATGCATGCATATTTCACAAGTACT 58.499 36.000 31.73 2.95 34.91 2.73
3952 7134 7.641760 CATGCATGCATATTTCACAAGTACTA 58.358 34.615 31.73 0.00 34.91 1.82
3953 7135 7.622893 TGCATGCATATTTCACAAGTACTAA 57.377 32.000 18.46 0.00 0.00 2.24
3954 7136 7.696755 TGCATGCATATTTCACAAGTACTAAG 58.303 34.615 18.46 0.00 0.00 2.18
3955 7137 7.552330 TGCATGCATATTTCACAAGTACTAAGA 59.448 33.333 18.46 0.00 0.00 2.10
3956 7138 7.852945 GCATGCATATTTCACAAGTACTAAGAC 59.147 37.037 14.21 0.00 0.00 3.01
3957 7139 7.843490 TGCATATTTCACAAGTACTAAGACC 57.157 36.000 0.00 0.00 0.00 3.85
3958 7140 7.390823 TGCATATTTCACAAGTACTAAGACCA 58.609 34.615 0.00 0.00 0.00 4.02
3959 7141 7.333423 TGCATATTTCACAAGTACTAAGACCAC 59.667 37.037 0.00 0.00 0.00 4.16
3960 7142 7.333423 GCATATTTCACAAGTACTAAGACCACA 59.667 37.037 0.00 0.00 0.00 4.17
3961 7143 9.383519 CATATTTCACAAGTACTAAGACCACAT 57.616 33.333 0.00 0.00 0.00 3.21
3962 7144 7.672983 ATTTCACAAGTACTAAGACCACATG 57.327 36.000 0.00 0.00 0.00 3.21
3963 7145 4.566004 TCACAAGTACTAAGACCACATGC 58.434 43.478 0.00 0.00 0.00 4.06
3964 7146 4.039852 TCACAAGTACTAAGACCACATGCA 59.960 41.667 0.00 0.00 0.00 3.96
3965 7147 4.937620 CACAAGTACTAAGACCACATGCAT 59.062 41.667 0.00 0.00 0.00 3.96
3966 7148 4.937620 ACAAGTACTAAGACCACATGCATG 59.062 41.667 25.09 25.09 0.00 4.06
3967 7149 3.535561 AGTACTAAGACCACATGCATGC 58.464 45.455 26.53 11.82 0.00 4.06
3968 7150 2.495155 ACTAAGACCACATGCATGCA 57.505 45.000 26.53 25.04 0.00 3.96
3969 7151 3.008835 ACTAAGACCACATGCATGCAT 57.991 42.857 27.46 27.46 37.08 3.96
3970 7152 4.155063 ACTAAGACCACATGCATGCATA 57.845 40.909 31.73 13.59 34.91 3.14
3971 7153 4.722220 ACTAAGACCACATGCATGCATAT 58.278 39.130 31.73 20.24 34.91 1.78
3972 7154 5.135383 ACTAAGACCACATGCATGCATATT 58.865 37.500 31.73 19.21 34.91 1.28
3973 7155 5.595542 ACTAAGACCACATGCATGCATATTT 59.404 36.000 31.73 15.04 34.91 1.40
3974 7156 4.579454 AGACCACATGCATGCATATTTC 57.421 40.909 31.73 22.99 34.91 2.17
3975 7157 3.955551 AGACCACATGCATGCATATTTCA 59.044 39.130 31.73 3.08 34.91 2.69
3976 7158 4.587262 AGACCACATGCATGCATATTTCAT 59.413 37.500 31.73 15.64 34.91 2.57
3977 7159 4.627058 ACCACATGCATGCATATTTCATG 58.373 39.130 31.73 21.39 43.02 3.07
3978 7160 4.100344 ACCACATGCATGCATATTTCATGT 59.900 37.500 31.73 22.05 45.82 3.21
3979 7161 4.684242 CCACATGCATGCATATTTCATGTC 59.316 41.667 31.73 8.36 43.88 3.06
3980 7162 5.285651 CACATGCATGCATATTTCATGTCA 58.714 37.500 31.73 0.00 43.88 3.58
3981 7163 5.751028 CACATGCATGCATATTTCATGTCAA 59.249 36.000 31.73 0.00 43.88 3.18
3982 7164 6.256757 CACATGCATGCATATTTCATGTCAAA 59.743 34.615 31.73 0.00 43.88 2.69
3983 7165 6.819146 ACATGCATGCATATTTCATGTCAAAA 59.181 30.769 31.73 0.00 42.63 2.44
3984 7166 7.334671 ACATGCATGCATATTTCATGTCAAAAA 59.665 29.630 31.73 0.00 42.63 1.94
4014 7196 9.388506 TCAAAATCTTTTAAGCACCAATTTTGA 57.611 25.926 16.71 16.71 43.66 2.69
4015 7197 9.654417 CAAAATCTTTTAAGCACCAATTTTGAG 57.346 29.630 14.72 0.00 41.60 3.02
4016 7198 7.967890 AATCTTTTAAGCACCAATTTTGAGG 57.032 32.000 0.00 0.00 0.00 3.86
4017 7199 6.478512 TCTTTTAAGCACCAATTTTGAGGT 57.521 33.333 0.00 0.00 39.10 3.85
4045 7227 2.068837 AAAACATGCTCCAATGCACG 57.931 45.000 0.00 0.00 46.33 5.34
4046 7228 0.388907 AAACATGCTCCAATGCACGC 60.389 50.000 0.00 0.00 46.33 5.34
4047 7229 2.277692 CATGCTCCAATGCACGCG 60.278 61.111 3.53 3.53 46.33 6.01
4048 7230 2.747460 ATGCTCCAATGCACGCGT 60.747 55.556 5.58 5.58 46.33 6.01
4049 7231 3.042842 ATGCTCCAATGCACGCGTG 62.043 57.895 34.01 34.01 46.33 5.34
4059 7241 2.355126 CACGCGTGCACTGAGAGT 60.355 61.111 28.16 4.46 0.00 3.24
4060 7242 2.049985 ACGCGTGCACTGAGAGTC 60.050 61.111 12.93 0.00 0.00 3.36
4061 7243 2.050077 CGCGTGCACTGAGAGTCA 60.050 61.111 16.19 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.206750 GCTAAACACACGTTGGAGACA 58.793 47.619 0.00 0.00 34.86 3.41
55 56 2.542178 TGTAGCTGCTAAACACACGTTG 59.458 45.455 11.57 0.00 34.86 4.10
58 59 4.404507 AATTGTAGCTGCTAAACACACG 57.595 40.909 11.57 0.00 0.00 4.49
71 72 6.568869 TGTTGGCCACATTATTAATTGTAGC 58.431 36.000 3.88 0.00 0.00 3.58
82 83 2.026729 TCGATTCCTGTTGGCCACATTA 60.027 45.455 3.88 0.00 33.76 1.90
88 89 1.876156 GATGATCGATTCCTGTTGGCC 59.124 52.381 0.00 0.00 0.00 5.36
102 103 2.804527 CATCCACACATGGTCGATGATC 59.195 50.000 13.03 0.00 44.87 2.92
119 120 0.454600 CAGGCATGTGTTCTGCATCC 59.545 55.000 0.00 0.00 41.47 3.51
120 121 1.131883 GACAGGCATGTGTTCTGCATC 59.868 52.381 9.62 0.00 40.68 3.91
121 122 1.171308 GACAGGCATGTGTTCTGCAT 58.829 50.000 9.62 0.00 40.68 3.96
122 123 0.890542 GGACAGGCATGTGTTCTGCA 60.891 55.000 9.62 0.00 40.68 4.41
123 124 0.890542 TGGACAGGCATGTGTTCTGC 60.891 55.000 9.62 0.00 40.68 4.26
124 125 0.877071 GTGGACAGGCATGTGTTCTG 59.123 55.000 9.62 0.00 40.68 3.02
125 126 0.250901 GGTGGACAGGCATGTGTTCT 60.251 55.000 9.62 0.00 40.68 3.01
126 127 1.244019 GGGTGGACAGGCATGTGTTC 61.244 60.000 9.62 0.00 40.68 3.18
127 128 1.228552 GGGTGGACAGGCATGTGTT 60.229 57.895 9.62 0.00 40.68 3.32
129 130 2.747460 CGGGTGGACAGGCATGTG 60.747 66.667 9.62 0.00 40.68 3.21
130 131 4.033776 CCGGGTGGACAGGCATGT 62.034 66.667 2.33 2.33 44.31 3.21
141 142 0.179094 TACTAATGCTTCGCCGGGTG 60.179 55.000 2.18 0.00 0.00 4.61
145 146 3.123804 AGAACATACTAATGCTTCGCCG 58.876 45.455 0.00 0.00 36.50 6.46
148 149 9.478019 CTTTACAAAGAACATACTAATGCTTCG 57.522 33.333 0.00 0.00 38.28 3.79
164 165 9.627123 AATAATGTAGGCTATGCTTTACAAAGA 57.373 29.630 5.89 0.00 38.28 2.52
186 187 6.870971 AGCGTTGAAAGTGGAGTAAAATAA 57.129 33.333 0.00 0.00 0.00 1.40
208 209 6.381801 CACAGGCTAACAAGGTCAATTTAAG 58.618 40.000 0.00 0.00 0.00 1.85
210 211 4.764823 CCACAGGCTAACAAGGTCAATTTA 59.235 41.667 0.00 0.00 0.00 1.40
278 464 5.769484 TGGTCACTAGATTTCGGTCTATC 57.231 43.478 0.00 0.00 30.75 2.08
328 514 6.833933 TGTCATATGTAGAGTACATCAGTGGT 59.166 38.462 1.90 0.00 45.83 4.16
350 536 6.068473 AGTTCACCCGATTAAGTTTTTGTC 57.932 37.500 0.00 0.00 0.00 3.18
390 581 0.389687 AATTGTTTTGGCGGCCGATG 60.390 50.000 33.48 0.00 0.00 3.84
402 593 4.064388 GTTTGTGCCATGGCTAATTGTTT 58.936 39.130 35.53 0.00 42.51 2.83
411 602 1.005867 CACCTGTTTGTGCCATGGC 60.006 57.895 30.54 30.54 42.35 4.40
463 654 2.437716 ATTTAGCGTGCCGTGGGG 60.438 61.111 0.00 0.00 0.00 4.96
479 670 2.359107 CACACACTCGCTGGCCAT 60.359 61.111 5.51 0.00 0.00 4.40
486 677 1.002366 CAGCTATTCCACACACTCGC 58.998 55.000 0.00 0.00 0.00 5.03
527 756 4.272504 GCAGAAAGCACTGTGTTACTACAA 59.727 41.667 9.86 0.00 44.79 2.41
529 758 4.391140 GCAGAAAGCACTGTGTTACTAC 57.609 45.455 9.86 0.00 44.79 2.73
541 770 4.736307 TAGGTTTGCCTGGCAGAAAGCA 62.736 50.000 27.51 18.96 46.47 3.91
542 771 1.005748 GGTTTGCCTGGCAGAAAGC 60.006 57.895 22.17 19.04 40.61 3.51
543 772 1.909700 TAGGTTTGCCTGGCAGAAAG 58.090 50.000 22.17 0.00 46.47 2.62
544 773 2.238521 CTTAGGTTTGCCTGGCAGAAA 58.761 47.619 22.17 11.69 46.47 2.52
545 774 1.909700 CTTAGGTTTGCCTGGCAGAA 58.090 50.000 22.17 15.53 46.47 3.02
546 775 0.609131 GCTTAGGTTTGCCTGGCAGA 60.609 55.000 22.17 15.35 46.47 4.26
547 776 0.610232 AGCTTAGGTTTGCCTGGCAG 60.610 55.000 22.17 7.75 46.47 4.85
548 777 0.609131 GAGCTTAGGTTTGCCTGGCA 60.609 55.000 19.30 19.30 46.47 4.92
549 778 1.648467 CGAGCTTAGGTTTGCCTGGC 61.648 60.000 12.87 12.87 46.47 4.85
550 779 1.648467 GCGAGCTTAGGTTTGCCTGG 61.648 60.000 0.00 0.00 46.47 4.45
551 780 1.648467 GGCGAGCTTAGGTTTGCCTG 61.648 60.000 17.39 0.00 45.94 4.85
552 781 1.377333 GGCGAGCTTAGGTTTGCCT 60.377 57.895 17.39 0.00 45.94 4.75
553 782 3.188011 GGCGAGCTTAGGTTTGCC 58.812 61.111 11.65 11.65 44.02 4.52
554 783 0.378610 GATGGCGAGCTTAGGTTTGC 59.621 55.000 0.00 1.82 33.13 3.68
555 784 1.737838 TGATGGCGAGCTTAGGTTTG 58.262 50.000 0.00 0.00 0.00 2.93
556 785 2.084546 GTTGATGGCGAGCTTAGGTTT 58.915 47.619 0.00 0.00 0.00 3.27
557 786 1.003118 TGTTGATGGCGAGCTTAGGTT 59.997 47.619 0.00 0.00 0.00 3.50
558 787 0.613260 TGTTGATGGCGAGCTTAGGT 59.387 50.000 0.00 0.00 0.00 3.08
559 788 1.959042 ATGTTGATGGCGAGCTTAGG 58.041 50.000 0.00 0.00 0.00 2.69
560 789 4.993584 AGATAATGTTGATGGCGAGCTTAG 59.006 41.667 0.00 0.00 0.00 2.18
561 790 4.960938 AGATAATGTTGATGGCGAGCTTA 58.039 39.130 0.00 0.00 0.00 3.09
562 791 3.812053 GAGATAATGTTGATGGCGAGCTT 59.188 43.478 0.00 0.00 0.00 3.74
563 792 3.397482 GAGATAATGTTGATGGCGAGCT 58.603 45.455 0.00 0.00 0.00 4.09
564 793 2.481952 GGAGATAATGTTGATGGCGAGC 59.518 50.000 0.00 0.00 0.00 5.03
565 794 3.744942 CAGGAGATAATGTTGATGGCGAG 59.255 47.826 0.00 0.00 0.00 5.03
566 795 3.732212 CAGGAGATAATGTTGATGGCGA 58.268 45.455 0.00 0.00 0.00 5.54
567 796 2.225019 GCAGGAGATAATGTTGATGGCG 59.775 50.000 0.00 0.00 0.00 5.69
568 797 3.484407 AGCAGGAGATAATGTTGATGGC 58.516 45.455 0.00 0.00 0.00 4.40
569 798 4.070716 GGAGCAGGAGATAATGTTGATGG 58.929 47.826 0.00 0.00 0.00 3.51
621 850 2.347846 GCACAAAAATGAAAGCACGCAG 60.348 45.455 0.00 0.00 0.00 5.18
622 851 1.592081 GCACAAAAATGAAAGCACGCA 59.408 42.857 0.00 0.00 0.00 5.24
628 857 4.027458 CACACGTGAGCACAAAAATGAAAG 60.027 41.667 25.01 0.00 0.00 2.62
642 871 1.733041 CTACCGGTGCACACGTGAG 60.733 63.158 25.01 16.59 0.00 3.51
652 881 1.024579 GTTGATGTGGGCTACCGGTG 61.025 60.000 19.93 8.61 40.75 4.94
653 882 1.298667 GTTGATGTGGGCTACCGGT 59.701 57.895 13.98 13.98 40.75 5.28
654 883 1.813753 CGTTGATGTGGGCTACCGG 60.814 63.158 0.00 0.00 40.75 5.28
655 884 1.079405 ACGTTGATGTGGGCTACCG 60.079 57.895 0.00 0.00 40.75 4.02
657 886 0.036765 TGGACGTTGATGTGGGCTAC 60.037 55.000 0.00 0.00 0.00 3.58
659 888 1.003355 CTGGACGTTGATGTGGGCT 60.003 57.895 0.00 0.00 0.00 5.19
660 889 0.036765 TACTGGACGTTGATGTGGGC 60.037 55.000 0.00 0.00 0.00 5.36
661 890 2.691409 ATACTGGACGTTGATGTGGG 57.309 50.000 0.00 0.00 0.00 4.61
662 891 5.642063 ACTTTTATACTGGACGTTGATGTGG 59.358 40.000 0.00 0.00 0.00 4.17
663 892 6.534059 CACTTTTATACTGGACGTTGATGTG 58.466 40.000 0.00 0.00 0.00 3.21
664 893 5.121768 GCACTTTTATACTGGACGTTGATGT 59.878 40.000 0.00 0.00 0.00 3.06
665 894 5.121611 TGCACTTTTATACTGGACGTTGATG 59.878 40.000 0.00 0.00 0.00 3.07
666 895 5.242434 TGCACTTTTATACTGGACGTTGAT 58.758 37.500 0.00 0.00 0.00 2.57
667 896 4.633175 TGCACTTTTATACTGGACGTTGA 58.367 39.130 0.00 0.00 0.00 3.18
668 897 5.351233 TTGCACTTTTATACTGGACGTTG 57.649 39.130 0.00 0.00 0.00 4.10
669 898 5.619086 GCATTGCACTTTTATACTGGACGTT 60.619 40.000 3.15 0.00 0.00 3.99
670 899 4.142687 GCATTGCACTTTTATACTGGACGT 60.143 41.667 3.15 0.00 0.00 4.34
671 900 4.094887 AGCATTGCACTTTTATACTGGACG 59.905 41.667 11.91 0.00 0.00 4.79
672 901 5.567138 AGCATTGCACTTTTATACTGGAC 57.433 39.130 11.91 0.00 0.00 4.02
673 902 6.093495 GTGTAGCATTGCACTTTTATACTGGA 59.907 38.462 11.91 0.00 37.02 3.86
674 903 6.258160 GTGTAGCATTGCACTTTTATACTGG 58.742 40.000 11.91 0.00 37.02 4.00
675 904 6.094048 AGGTGTAGCATTGCACTTTTATACTG 59.906 38.462 11.91 0.00 39.55 2.74
677 906 6.436843 AGGTGTAGCATTGCACTTTTATAC 57.563 37.500 11.91 3.43 39.55 1.47
679 908 5.590259 CCTAGGTGTAGCATTGCACTTTTAT 59.410 40.000 11.91 0.00 39.55 1.40
680 909 4.941263 CCTAGGTGTAGCATTGCACTTTTA 59.059 41.667 11.91 0.00 39.55 1.52
683 912 2.571653 TCCTAGGTGTAGCATTGCACTT 59.428 45.455 11.91 0.00 39.55 3.16
684 913 2.187958 TCCTAGGTGTAGCATTGCACT 58.812 47.619 11.91 3.58 39.55 4.40
685 914 2.691409 TCCTAGGTGTAGCATTGCAC 57.309 50.000 11.91 7.73 38.97 4.57
686 915 3.712016 TTTCCTAGGTGTAGCATTGCA 57.288 42.857 11.91 0.00 0.00 4.08
687 916 4.010349 ACTTTTCCTAGGTGTAGCATTGC 58.990 43.478 9.08 0.00 0.00 3.56
688 917 7.390718 ACTTAACTTTTCCTAGGTGTAGCATTG 59.609 37.037 9.08 0.00 0.00 2.82
689 918 7.459234 ACTTAACTTTTCCTAGGTGTAGCATT 58.541 34.615 9.08 0.00 0.00 3.56
691 920 6.429521 ACTTAACTTTTCCTAGGTGTAGCA 57.570 37.500 9.08 0.00 0.00 3.49
692 921 7.381323 TGTACTTAACTTTTCCTAGGTGTAGC 58.619 38.462 9.08 0.00 0.00 3.58
693 922 8.800332 TCTGTACTTAACTTTTCCTAGGTGTAG 58.200 37.037 9.08 6.93 0.00 2.74
694 923 8.710749 TCTGTACTTAACTTTTCCTAGGTGTA 57.289 34.615 9.08 0.00 0.00 2.90
696 925 9.503399 AATTCTGTACTTAACTTTTCCTAGGTG 57.497 33.333 9.08 0.68 0.00 4.00
707 936 9.415544 CCTGTTACGTAAATTCTGTACTTAACT 57.584 33.333 10.11 0.00 37.22 2.24
708 937 8.164790 GCCTGTTACGTAAATTCTGTACTTAAC 58.835 37.037 10.11 7.64 37.01 2.01
709 938 7.871973 TGCCTGTTACGTAAATTCTGTACTTAA 59.128 33.333 10.11 0.00 0.00 1.85
710 939 7.377398 TGCCTGTTACGTAAATTCTGTACTTA 58.623 34.615 10.11 0.00 0.00 2.24
711 940 6.225318 TGCCTGTTACGTAAATTCTGTACTT 58.775 36.000 10.11 0.00 0.00 2.24
712 941 5.786311 TGCCTGTTACGTAAATTCTGTACT 58.214 37.500 10.11 0.00 0.00 2.73
713 942 6.301861 GTTGCCTGTTACGTAAATTCTGTAC 58.698 40.000 10.11 0.00 0.00 2.90
725 1568 1.065358 CCTACACGTTGCCTGTTACG 58.935 55.000 0.00 0.00 43.08 3.18
726 1569 2.443887 TCCTACACGTTGCCTGTTAC 57.556 50.000 0.00 0.00 0.00 2.50
727 1570 3.331150 CAATCCTACACGTTGCCTGTTA 58.669 45.455 0.00 0.00 0.00 2.41
729 1572 1.610624 CCAATCCTACACGTTGCCTGT 60.611 52.381 0.00 0.00 0.00 4.00
731 1574 0.035439 CCCAATCCTACACGTTGCCT 60.035 55.000 0.00 0.00 0.00 4.75
733 1576 2.038387 ATCCCAATCCTACACGTTGC 57.962 50.000 0.00 0.00 0.00 4.17
734 1577 2.682856 CCAATCCCAATCCTACACGTTG 59.317 50.000 0.00 0.00 0.00 4.10
741 2125 3.398967 CCTTCCATCCAATCCCAATCCTA 59.601 47.826 0.00 0.00 0.00 2.94
744 2128 2.091111 ACCCTTCCATCCAATCCCAATC 60.091 50.000 0.00 0.00 0.00 2.67
746 2130 1.006998 CACCCTTCCATCCAATCCCAA 59.993 52.381 0.00 0.00 0.00 4.12
748 2132 0.631212 ACACCCTTCCATCCAATCCC 59.369 55.000 0.00 0.00 0.00 3.85
750 2134 1.767759 CCACACCCTTCCATCCAATC 58.232 55.000 0.00 0.00 0.00 2.67
770 2154 4.802051 CATCCGTGTGGGCCCCTG 62.802 72.222 22.27 5.95 35.24 4.45
773 2157 0.970427 ATTTTCATCCGTGTGGGCCC 60.970 55.000 17.59 17.59 35.24 5.80
774 2158 0.455815 GATTTTCATCCGTGTGGGCC 59.544 55.000 0.00 0.00 35.24 5.80
775 2159 1.133025 CTGATTTTCATCCGTGTGGGC 59.867 52.381 0.00 0.00 35.24 5.36
777 2161 1.745087 CCCTGATTTTCATCCGTGTGG 59.255 52.381 0.00 0.00 0.00 4.17
779 2163 1.340991 CCCCCTGATTTTCATCCGTGT 60.341 52.381 0.00 0.00 0.00 4.49
781 2165 3.903208 CCCCCTGATTTTCATCCGT 57.097 52.632 0.00 0.00 0.00 4.69
796 2180 2.779506 CCTAACAAATCTATCGCCCCC 58.220 52.381 0.00 0.00 0.00 5.40
798 2182 2.808543 CTGCCTAACAAATCTATCGCCC 59.191 50.000 0.00 0.00 0.00 6.13
799 2183 2.808543 CCTGCCTAACAAATCTATCGCC 59.191 50.000 0.00 0.00 0.00 5.54
800 2184 3.467803 ACCTGCCTAACAAATCTATCGC 58.532 45.455 0.00 0.00 0.00 4.58
801 2185 5.175126 CGTAACCTGCCTAACAAATCTATCG 59.825 44.000 0.00 0.00 0.00 2.92
802 2186 6.047231 ACGTAACCTGCCTAACAAATCTATC 58.953 40.000 0.00 0.00 0.00 2.08
803 2187 5.985911 ACGTAACCTGCCTAACAAATCTAT 58.014 37.500 0.00 0.00 0.00 1.98
804 2188 5.410355 ACGTAACCTGCCTAACAAATCTA 57.590 39.130 0.00 0.00 0.00 1.98
806 2190 5.640783 AGTTACGTAACCTGCCTAACAAATC 59.359 40.000 29.87 4.35 36.88 2.17
809 2193 4.281688 AGAGTTACGTAACCTGCCTAACAA 59.718 41.667 29.87 0.00 36.88 2.83
810 2194 3.828451 AGAGTTACGTAACCTGCCTAACA 59.172 43.478 29.87 0.00 36.88 2.41
811 2195 4.446994 AGAGTTACGTAACCTGCCTAAC 57.553 45.455 29.87 9.16 36.88 2.34
813 2197 3.127548 CGAAGAGTTACGTAACCTGCCTA 59.872 47.826 29.87 0.00 36.88 3.93
815 2199 2.257034 CGAAGAGTTACGTAACCTGCC 58.743 52.381 29.87 18.31 36.88 4.85
818 2202 3.746492 ACGTACGAAGAGTTACGTAACCT 59.254 43.478 29.87 23.44 45.65 3.50
819 2203 4.066710 ACGTACGAAGAGTTACGTAACC 57.933 45.455 29.87 21.88 45.65 2.85
820 2204 4.201307 GCAACGTACGAAGAGTTACGTAAC 60.201 45.833 27.23 27.23 46.59 2.50
821 2205 3.906008 GCAACGTACGAAGAGTTACGTAA 59.094 43.478 24.41 3.29 46.59 3.18
824 2208 2.578495 AGCAACGTACGAAGAGTTACG 58.422 47.619 24.41 0.00 41.18 3.18
825 2209 4.430830 CGAAAGCAACGTACGAAGAGTTAC 60.431 45.833 24.41 0.00 0.00 2.50
827 2211 2.470257 CGAAAGCAACGTACGAAGAGTT 59.530 45.455 24.41 9.95 0.00 3.01
828 2212 2.049228 CGAAAGCAACGTACGAAGAGT 58.951 47.619 24.41 1.85 0.00 3.24
829 2213 2.049228 ACGAAAGCAACGTACGAAGAG 58.951 47.619 24.41 9.29 42.17 2.85
830 2214 2.124011 ACGAAAGCAACGTACGAAGA 57.876 45.000 24.41 0.00 42.17 2.87
831 2215 2.340577 CCTACGAAAGCAACGTACGAAG 59.659 50.000 24.41 14.47 43.62 3.79
833 2217 1.266718 ACCTACGAAAGCAACGTACGA 59.733 47.619 24.41 0.00 43.62 3.43
834 2218 1.384409 CACCTACGAAAGCAACGTACG 59.616 52.381 15.01 15.01 43.62 3.67
835 2219 2.397549 ACACCTACGAAAGCAACGTAC 58.602 47.619 0.00 0.00 43.62 3.67
836 2220 2.798976 ACACCTACGAAAGCAACGTA 57.201 45.000 0.00 0.00 43.62 3.57
840 2224 8.252417 TCAATATTACTACACCTACGAAAGCAA 58.748 33.333 0.00 0.00 0.00 3.91
841 2225 7.774134 TCAATATTACTACACCTACGAAAGCA 58.226 34.615 0.00 0.00 0.00 3.91
842 2226 7.919621 ACTCAATATTACTACACCTACGAAAGC 59.080 37.037 0.00 0.00 0.00 3.51
861 2245 9.832445 GGTTCTCCACTCATTTTATACTCAATA 57.168 33.333 0.00 0.00 0.00 1.90
864 2248 6.338146 CGGTTCTCCACTCATTTTATACTCA 58.662 40.000 0.00 0.00 0.00 3.41
865 2249 5.753921 CCGGTTCTCCACTCATTTTATACTC 59.246 44.000 0.00 0.00 0.00 2.59
866 2250 5.424252 TCCGGTTCTCCACTCATTTTATACT 59.576 40.000 0.00 0.00 0.00 2.12
867 2251 5.522824 GTCCGGTTCTCCACTCATTTTATAC 59.477 44.000 0.00 0.00 0.00 1.47
876 3699 0.395312 TTTGGTCCGGTTCTCCACTC 59.605 55.000 0.00 0.00 0.00 3.51
886 3709 1.653151 GTAGCTAGCTTTTGGTCCGG 58.347 55.000 24.88 0.00 0.00 5.14
892 3715 1.429148 CCGCGGGTAGCTAGCTTTTG 61.429 60.000 24.88 11.73 45.59 2.44
893 3716 1.153429 CCGCGGGTAGCTAGCTTTT 60.153 57.895 24.88 0.39 45.59 2.27
894 3717 2.499685 CCGCGGGTAGCTAGCTTT 59.500 61.111 24.88 1.27 45.59 3.51
895 3718 4.222847 GCCGCGGGTAGCTAGCTT 62.223 66.667 29.38 7.25 45.59 3.74
907 3730 1.286501 TATTAGCTTGAGTTGCCGCG 58.713 50.000 0.00 0.00 0.00 6.46
910 3733 2.539750 GCGCTTATTAGCTTGAGTTGCC 60.540 50.000 0.00 0.00 45.51 4.52
911 3734 2.709636 GCGCTTATTAGCTTGAGTTGC 58.290 47.619 0.00 0.00 45.51 4.17
979 3805 0.976073 TCCACCCCTGAGACGGATTC 60.976 60.000 0.00 0.00 0.00 2.52
990 3816 1.912862 AAGGAAGCATATCCACCCCT 58.087 50.000 6.07 0.00 42.27 4.79
996 3822 3.566523 CGTCGAGTAAGGAAGCATATCC 58.433 50.000 0.00 0.00 39.96 2.59
1048 3874 2.279517 CTCCGCGTAGGACATGGC 60.280 66.667 4.92 0.00 45.98 4.40
1203 4029 2.711924 GGCTGCAGCTTGTATCGC 59.288 61.111 35.82 14.76 41.70 4.58
1228 4054 4.736896 GGCGGACGGCGAGAGTTT 62.737 66.667 16.62 0.00 44.92 2.66
1273 4099 2.435059 GGTGACGAGCAAGAGGCC 60.435 66.667 0.00 0.00 46.50 5.19
1296 4122 1.824329 GGAGACGAGATGGAGCGGA 60.824 63.158 0.00 0.00 0.00 5.54
1392 4218 5.755375 ACAGCAAATGGATCAATACTACTCG 59.245 40.000 0.00 0.00 0.00 4.18
1542 4460 4.954970 CCCCACTTGGCGTGCAGT 62.955 66.667 0.00 0.00 42.42 4.40
1549 4467 0.035820 TTGTCGTATCCCCACTTGGC 60.036 55.000 0.00 0.00 0.00 4.52
1620 4538 2.423898 ATCGGACCAGTGCCCGTAG 61.424 63.158 17.82 0.00 45.48 3.51
1695 4613 1.298014 CCAGAGCCAGAGGGTTGTC 59.702 63.158 0.00 0.00 36.17 3.18
1766 4684 6.665680 TGAAGGTAAGACTAAGAGCTGAGATT 59.334 38.462 0.00 0.00 0.00 2.40
1791 4709 1.258445 ATCGTCGAAGCCACTTCCCT 61.258 55.000 0.00 0.00 37.20 4.20
1798 4716 0.882484 TTGTTGCATCGTCGAAGCCA 60.882 50.000 18.78 6.07 0.00 4.75
1832 4750 6.530534 CAGTCGATGTTTACGAGGTAATTCTT 59.469 38.462 0.00 0.00 40.37 2.52
1838 4756 3.503363 ACACAGTCGATGTTTACGAGGTA 59.497 43.478 0.00 0.00 41.41 3.08
1855 4773 1.153597 TGCACGCAGTTCTGACACAG 61.154 55.000 3.84 0.00 41.61 3.66
1862 4780 1.873591 CTTAAACCTGCACGCAGTTCT 59.126 47.619 17.31 4.13 41.61 3.01
1870 4788 1.601166 ACGGGAACTTAAACCTGCAC 58.399 50.000 0.00 0.00 36.12 4.57
1957 4875 0.034616 AGTTGCTCTGACTGTGCTCC 59.965 55.000 7.72 0.00 36.27 4.70
1966 4884 2.544721 AGGGATGAGAAGTTGCTCTGA 58.455 47.619 0.00 0.00 35.91 3.27
2078 5253 6.253758 TCAGGAACTAGTAAGGAATGTGAGA 58.746 40.000 0.00 0.00 36.02 3.27
2155 5331 6.990349 GCTATACCTTCACTAAGTTTGCCATA 59.010 38.462 0.00 0.00 0.00 2.74
2260 5436 0.394216 TGACATGCCCACTATGGTGC 60.394 55.000 3.19 0.00 41.75 5.01
2263 5439 2.159393 CGTTTTGACATGCCCACTATGG 60.159 50.000 0.00 0.00 37.25 2.74
2341 5517 9.613428 TCAGAGGTTAATTATACACAATTCTGG 57.387 33.333 10.78 0.00 30.84 3.86
2361 5537 7.751047 TCGAGTAATTTCGTATTTTCAGAGG 57.249 36.000 0.00 0.00 41.22 3.69
2432 5609 3.976942 CGCAATGCATTACCATTTAGCTC 59.023 43.478 12.53 0.00 33.35 4.09
2455 5632 9.573133 AGCAACTAATAGTATTGAAAACAATGC 57.427 29.630 5.61 0.00 0.00 3.56
2493 5670 5.596361 TCACAAATTCACAAACTATGGTGGT 59.404 36.000 0.00 0.00 35.74 4.16
2505 5682 6.981762 AGTTTGCATTTTCACAAATTCACA 57.018 29.167 0.00 0.00 38.01 3.58
2551 5728 9.998381 TTTCGTTTCGCTATATATATTGTTTCG 57.002 29.630 0.00 0.00 0.00 3.46
2563 5740 9.955208 TGAGATAATAGTTTTCGTTTCGCTATA 57.045 29.630 0.00 0.00 0.00 1.31
2564 5741 8.867112 TGAGATAATAGTTTTCGTTTCGCTAT 57.133 30.769 0.00 0.00 0.00 2.97
2565 5742 8.867112 ATGAGATAATAGTTTTCGTTTCGCTA 57.133 30.769 0.00 0.00 0.00 4.26
2566 5743 7.772332 ATGAGATAATAGTTTTCGTTTCGCT 57.228 32.000 0.00 0.00 0.00 4.93
2567 5744 8.753175 AGTATGAGATAATAGTTTTCGTTTCGC 58.247 33.333 0.00 0.00 0.00 4.70
2570 5747 9.543783 GGGAGTATGAGATAATAGTTTTCGTTT 57.456 33.333 0.00 0.00 0.00 3.60
2572 5749 7.256225 GGGGGAGTATGAGATAATAGTTTTCGT 60.256 40.741 0.00 0.00 0.00 3.85
2573 5750 7.038941 AGGGGGAGTATGAGATAATAGTTTTCG 60.039 40.741 0.00 0.00 0.00 3.46
2574 5751 8.208575 AGGGGGAGTATGAGATAATAGTTTTC 57.791 38.462 0.00 0.00 0.00 2.29
2576 5753 6.731448 GGAGGGGGAGTATGAGATAATAGTTT 59.269 42.308 0.00 0.00 0.00 2.66
2578 5755 5.318889 TGGAGGGGGAGTATGAGATAATAGT 59.681 44.000 0.00 0.00 0.00 2.12
2579 5756 5.843469 TGGAGGGGGAGTATGAGATAATAG 58.157 45.833 0.00 0.00 0.00 1.73
2580 5757 5.896530 TGGAGGGGGAGTATGAGATAATA 57.103 43.478 0.00 0.00 0.00 0.98
2582 5759 4.569676 TTGGAGGGGGAGTATGAGATAA 57.430 45.455 0.00 0.00 0.00 1.75
2583 5760 4.569676 TTTGGAGGGGGAGTATGAGATA 57.430 45.455 0.00 0.00 0.00 1.98
2584 5761 3.438131 TTTGGAGGGGGAGTATGAGAT 57.562 47.619 0.00 0.00 0.00 2.75
2585 5762 2.961536 TTTGGAGGGGGAGTATGAGA 57.038 50.000 0.00 0.00 0.00 3.27
2587 5764 3.144068 TCATTTGGAGGGGGAGTATGA 57.856 47.619 0.00 0.00 0.00 2.15
2590 5767 3.660669 AGTTTTCATTTGGAGGGGGAGTA 59.339 43.478 0.00 0.00 0.00 2.59
2593 5770 4.965283 ATAGTTTTCATTTGGAGGGGGA 57.035 40.909 0.00 0.00 0.00 4.81
2595 5772 7.779798 TGAGATAATAGTTTTCATTTGGAGGGG 59.220 37.037 0.00 0.00 0.00 4.79
2604 5781 8.606830 GGGGGAGTATGAGATAATAGTTTTCAT 58.393 37.037 0.00 0.00 33.44 2.57
2605 5782 7.794683 AGGGGGAGTATGAGATAATAGTTTTCA 59.205 37.037 0.00 0.00 0.00 2.69
2606 5783 8.208575 AGGGGGAGTATGAGATAATAGTTTTC 57.791 38.462 0.00 0.00 0.00 2.29
2608 5785 6.731448 GGAGGGGGAGTATGAGATAATAGTTT 59.269 42.308 0.00 0.00 0.00 2.66
2610 5787 5.318889 TGGAGGGGGAGTATGAGATAATAGT 59.681 44.000 0.00 0.00 0.00 2.12
2611 5788 5.843469 TGGAGGGGGAGTATGAGATAATAG 58.157 45.833 0.00 0.00 0.00 1.73
2612 5789 5.896530 TGGAGGGGGAGTATGAGATAATA 57.103 43.478 0.00 0.00 0.00 0.98
2614 5791 4.569676 TTGGAGGGGGAGTATGAGATAA 57.430 45.455 0.00 0.00 0.00 1.75
2615 5792 4.569676 TTTGGAGGGGGAGTATGAGATA 57.430 45.455 0.00 0.00 0.00 1.98
2616 5793 3.438131 TTTGGAGGGGGAGTATGAGAT 57.562 47.619 0.00 0.00 0.00 2.75
2617 5794 2.961536 TTTGGAGGGGGAGTATGAGA 57.038 50.000 0.00 0.00 0.00 3.27
2618 5795 5.549619 AGATAATTTGGAGGGGGAGTATGAG 59.450 44.000 0.00 0.00 0.00 2.90
2619 5796 5.310594 CAGATAATTTGGAGGGGGAGTATGA 59.689 44.000 0.00 0.00 0.00 2.15
2620 5797 5.515534 CCAGATAATTTGGAGGGGGAGTATG 60.516 48.000 0.00 0.00 37.96 2.39
2622 5799 3.980698 CCAGATAATTTGGAGGGGGAGTA 59.019 47.826 0.00 0.00 37.96 2.59
2624 5801 2.489802 GCCAGATAATTTGGAGGGGGAG 60.490 54.545 0.00 0.00 37.96 4.30
2625 5802 1.499007 GCCAGATAATTTGGAGGGGGA 59.501 52.381 0.00 0.00 37.96 4.81
2626 5803 1.217689 TGCCAGATAATTTGGAGGGGG 59.782 52.381 0.00 0.00 37.96 5.40
2627 5804 2.754012 TGCCAGATAATTTGGAGGGG 57.246 50.000 0.00 0.00 37.96 4.79
2628 5805 5.104817 ACAATTTGCCAGATAATTTGGAGGG 60.105 40.000 0.00 0.00 37.96 4.30
2629 5806 5.981174 ACAATTTGCCAGATAATTTGGAGG 58.019 37.500 0.00 0.00 37.96 4.30
2630 5807 7.910441 AAACAATTTGCCAGATAATTTGGAG 57.090 32.000 0.00 0.00 37.96 3.86
2631 5808 8.688747 AAAAACAATTTGCCAGATAATTTGGA 57.311 26.923 0.00 0.00 37.96 3.53
2632 5809 8.785946 AGAAAAACAATTTGCCAGATAATTTGG 58.214 29.630 0.00 0.00 38.78 3.28
2640 5817 8.037758 TGAGTTTTAGAAAAACAATTTGCCAGA 58.962 29.630 15.43 0.00 32.81 3.86
2641 5818 8.195617 TGAGTTTTAGAAAAACAATTTGCCAG 57.804 30.769 15.43 0.00 32.81 4.85
2642 5819 8.553459 TTGAGTTTTAGAAAAACAATTTGCCA 57.447 26.923 15.43 2.26 32.81 4.92
2643 5820 9.272901 GTTTGAGTTTTAGAAAAACAATTTGCC 57.727 29.630 15.43 0.00 31.65 4.52
2667 5844 4.819769 ACTTGAGCAAACACAAACATGTT 58.180 34.783 4.92 4.92 44.76 2.71
2668 5845 4.454728 ACTTGAGCAAACACAAACATGT 57.545 36.364 0.00 0.00 0.00 3.21
2669 5846 5.783100 AAACTTGAGCAAACACAAACATG 57.217 34.783 0.00 0.00 0.00 3.21
2670 5847 5.700373 ACAAAACTTGAGCAAACACAAACAT 59.300 32.000 0.00 0.00 0.00 2.71
2671 5848 5.053145 ACAAAACTTGAGCAAACACAAACA 58.947 33.333 0.00 0.00 0.00 2.83
2672 5849 5.590104 ACAAAACTTGAGCAAACACAAAC 57.410 34.783 0.00 0.00 0.00 2.93
2673 5850 7.224753 TGTTTACAAAACTTGAGCAAACACAAA 59.775 29.630 4.35 0.00 36.48 2.83
2674 5851 6.701841 TGTTTACAAAACTTGAGCAAACACAA 59.298 30.769 4.35 0.00 36.48 3.33
2675 5852 6.216569 TGTTTACAAAACTTGAGCAAACACA 58.783 32.000 4.35 0.00 36.48 3.72
2676 5853 6.698359 TGTTTACAAAACTTGAGCAAACAC 57.302 33.333 4.35 0.00 36.48 3.32
2698 5875 8.314143 ACCAAGTCATGCATTTTCTTATTTTG 57.686 30.769 0.00 0.00 0.00 2.44
2701 5878 7.472334 AGACCAAGTCATGCATTTTCTTATT 57.528 32.000 0.00 0.00 34.60 1.40
2706 5883 4.151157 GCAAAGACCAAGTCATGCATTTTC 59.849 41.667 16.05 0.00 42.74 2.29
2712 5889 3.375782 AAAGCAAAGACCAAGTCATGC 57.624 42.857 14.15 14.15 43.18 4.06
2743 5920 4.420168 TCTTGAAACAGGCTTTCGTTTTG 58.580 39.130 3.34 0.00 35.53 2.44
2744 5921 4.398044 TCTCTTGAAACAGGCTTTCGTTTT 59.602 37.500 3.34 0.00 35.53 2.43
2748 5925 3.312421 TGTTCTCTTGAAACAGGCTTTCG 59.688 43.478 0.00 0.00 33.52 3.46
2762 5939 5.223449 TCCTTGGTCGTTTATGTTCTCTT 57.777 39.130 0.00 0.00 0.00 2.85
2809 5986 7.071196 AGACTACATGGCTTTATCTCCAACATA 59.929 37.037 0.00 0.00 35.75 2.29
2844 6024 9.719355 TTTGCAGTATGATACTAGTTTTGAGAA 57.281 29.630 4.56 0.00 39.69 2.87
3011 6191 3.049080 GCCGCCCCCTTCATCTTCT 62.049 63.158 0.00 0.00 0.00 2.85
3093 6273 2.297033 ACAATGCACAACAACTCCATCC 59.703 45.455 0.00 0.00 0.00 3.51
3214 6394 5.581126 ACGACATGGTATCATTGCAAAAT 57.419 34.783 1.71 2.85 0.00 1.82
3288 6469 3.071892 TCATAAGAACCTTGTGGGAACGT 59.928 43.478 0.00 0.00 38.76 3.99
3310 6491 2.567615 AGAGTTCCCTTATGTGTTCGCT 59.432 45.455 0.00 0.00 0.00 4.93
3311 6492 2.930682 GAGAGTTCCCTTATGTGTTCGC 59.069 50.000 0.00 0.00 0.00 4.70
3350 6531 5.163622 TGCTGATTAAGAATACAAGGCTTGC 60.164 40.000 26.45 10.61 0.00 4.01
3377 6558 5.810074 CAGACCGTGTATTGAACATCACATA 59.190 40.000 0.00 0.00 41.10 2.29
3383 6564 3.007506 TGTCCAGACCGTGTATTGAACAT 59.992 43.478 0.00 0.00 41.10 2.71
3408 6589 2.359214 TGGCTGTGTTTTTGCGTTGATA 59.641 40.909 0.00 0.00 0.00 2.15
3417 6598 2.569404 TGGGACTTTTGGCTGTGTTTTT 59.431 40.909 0.00 0.00 0.00 1.94
3427 6608 4.017126 GGGTTCTATTCTGGGACTTTTGG 58.983 47.826 0.00 0.00 0.00 3.28
3437 6618 7.500992 TCAGCATTAGTTAGGGTTCTATTCTG 58.499 38.462 0.00 0.00 0.00 3.02
3508 6690 8.352137 ACATCAAAGATAATCCAATTCACACA 57.648 30.769 0.00 0.00 0.00 3.72
3531 6713 2.116827 ACAACAGTTTCAACCGGACA 57.883 45.000 9.46 0.00 0.00 4.02
3536 6718 3.502191 TGAGCAACAACAGTTTCAACC 57.498 42.857 0.00 0.00 0.00 3.77
3544 6726 2.542411 GCTGGTTCTTGAGCAACAACAG 60.542 50.000 4.26 2.25 34.90 3.16
3549 6731 2.358898 TGAAAGCTGGTTCTTGAGCAAC 59.641 45.455 0.00 0.00 37.70 4.17
3552 6734 3.930634 ATTGAAAGCTGGTTCTTGAGC 57.069 42.857 0.00 0.00 35.28 4.26
3564 6746 4.519350 GCTAATGGTACCCCTATTGAAAGC 59.481 45.833 10.07 5.34 0.00 3.51
3581 6763 4.082841 TGCACACTAACCACATTGCTAATG 60.083 41.667 7.16 7.16 44.48 1.90
3603 6785 2.244695 TGTACACACCCCTGTCTACTG 58.755 52.381 0.00 0.00 0.00 2.74
3605 6787 3.259876 TCATTGTACACACCCCTGTCTAC 59.740 47.826 0.00 0.00 0.00 2.59
3636 6818 7.386573 TGTCACTTTGTTAATGTATGTCGACAT 59.613 33.333 31.93 31.93 41.92 3.06
3644 6826 9.393249 CGTCATTTTGTCACTTTGTTAATGTAT 57.607 29.630 0.00 0.00 0.00 2.29
3651 6833 8.522178 TTAAAACGTCATTTTGTCACTTTGTT 57.478 26.923 0.00 0.00 40.80 2.83
3685 6867 3.117888 ACACACCAACCTCAATGACTCTT 60.118 43.478 0.00 0.00 0.00 2.85
3691 6873 2.287788 GCTGAACACACCAACCTCAATG 60.288 50.000 0.00 0.00 0.00 2.82
3706 6888 1.334869 CAAGTGTTCCCAGTGCTGAAC 59.665 52.381 13.81 13.81 40.94 3.18
3707 6889 1.679139 CAAGTGTTCCCAGTGCTGAA 58.321 50.000 0.02 0.00 0.00 3.02
3708 6890 0.179020 CCAAGTGTTCCCAGTGCTGA 60.179 55.000 0.02 0.00 0.00 4.26
3709 6891 0.179020 TCCAAGTGTTCCCAGTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
3710 6892 0.550914 TTCCAAGTGTTCCCAGTGCT 59.449 50.000 0.00 0.00 0.00 4.40
3712 6894 2.586425 ACATTCCAAGTGTTCCCAGTG 58.414 47.619 0.00 0.00 0.00 3.66
3713 6895 2.958355 CAACATTCCAAGTGTTCCCAGT 59.042 45.455 0.00 0.00 37.69 4.00
3724 6906 3.762407 TCGGAAGAGACAACATTCCAA 57.238 42.857 4.27 0.00 42.20 3.53
3788 6970 2.179517 GGTCAGGAGCACTCGTCG 59.820 66.667 0.00 0.00 0.00 5.12
3835 7017 0.389948 GTCACCATCCGGTCACTCAC 60.390 60.000 0.00 0.00 44.71 3.51
3848 7030 0.817634 CCCGTGCTCAAAAGTCACCA 60.818 55.000 0.00 0.00 0.00 4.17
3849 7031 1.949257 CCCGTGCTCAAAAGTCACC 59.051 57.895 0.00 0.00 0.00 4.02
3850 7032 1.282875 GCCCGTGCTCAAAAGTCAC 59.717 57.895 0.00 0.00 33.53 3.67
3851 7033 1.153066 TGCCCGTGCTCAAAAGTCA 60.153 52.632 0.00 0.00 38.71 3.41
3852 7034 1.282875 GTGCCCGTGCTCAAAAGTC 59.717 57.895 0.00 0.00 38.71 3.01
3853 7035 0.823356 ATGTGCCCGTGCTCAAAAGT 60.823 50.000 0.00 0.00 43.51 2.66
3854 7036 0.314935 AATGTGCCCGTGCTCAAAAG 59.685 50.000 0.00 0.00 43.51 2.27
3855 7037 0.031857 CAATGTGCCCGTGCTCAAAA 59.968 50.000 0.00 0.00 43.51 2.44
3856 7038 0.821301 TCAATGTGCCCGTGCTCAAA 60.821 50.000 0.00 0.00 43.51 2.69
3857 7039 1.228094 TCAATGTGCCCGTGCTCAA 60.228 52.632 0.00 0.00 43.51 3.02
3858 7040 1.672030 CTCAATGTGCCCGTGCTCA 60.672 57.895 0.00 0.00 44.31 4.26
3859 7041 3.044059 GCTCAATGTGCCCGTGCTC 62.044 63.158 0.00 0.00 38.71 4.26
3860 7042 3.058160 GCTCAATGTGCCCGTGCT 61.058 61.111 0.00 0.00 38.71 4.40
3861 7043 4.120331 GGCTCAATGTGCCCGTGC 62.120 66.667 14.87 0.00 44.32 5.34
3897 7079 7.657354 GCTCTTTGGTTGTAAGAATCCATTTTT 59.343 33.333 0.00 0.00 31.67 1.94
3898 7080 7.154656 GCTCTTTGGTTGTAAGAATCCATTTT 58.845 34.615 0.00 0.00 31.67 1.82
3899 7081 6.267471 TGCTCTTTGGTTGTAAGAATCCATTT 59.733 34.615 0.00 0.00 31.67 2.32
3900 7082 5.774690 TGCTCTTTGGTTGTAAGAATCCATT 59.225 36.000 0.00 0.00 31.67 3.16
3901 7083 5.324409 TGCTCTTTGGTTGTAAGAATCCAT 58.676 37.500 0.00 0.00 31.67 3.41
3902 7084 4.724399 TGCTCTTTGGTTGTAAGAATCCA 58.276 39.130 0.00 0.00 31.67 3.41
3903 7085 5.644644 CATGCTCTTTGGTTGTAAGAATCC 58.355 41.667 0.00 0.00 31.67 3.01
3904 7086 5.098211 GCATGCTCTTTGGTTGTAAGAATC 58.902 41.667 11.37 0.00 31.67 2.52
3905 7087 4.523943 TGCATGCTCTTTGGTTGTAAGAAT 59.476 37.500 20.33 0.00 31.67 2.40
3906 7088 3.888323 TGCATGCTCTTTGGTTGTAAGAA 59.112 39.130 20.33 0.00 31.67 2.52
3907 7089 3.485394 TGCATGCTCTTTGGTTGTAAGA 58.515 40.909 20.33 0.00 0.00 2.10
3908 7090 3.921119 TGCATGCTCTTTGGTTGTAAG 57.079 42.857 20.33 0.00 0.00 2.34
3909 7091 4.177165 CATGCATGCTCTTTGGTTGTAA 57.823 40.909 20.33 0.00 0.00 2.41
3910 7092 3.853831 CATGCATGCTCTTTGGTTGTA 57.146 42.857 20.33 0.00 0.00 2.41
3911 7093 2.736144 CATGCATGCTCTTTGGTTGT 57.264 45.000 20.33 0.00 0.00 3.32
3927 7109 6.500910 AGTACTTGTGAAATATGCATGCATG 58.499 36.000 37.43 22.70 37.82 4.06
3928 7110 6.704289 AGTACTTGTGAAATATGCATGCAT 57.296 33.333 33.92 33.92 40.19 3.96
3929 7111 7.552330 TCTTAGTACTTGTGAAATATGCATGCA 59.448 33.333 25.04 25.04 0.00 3.96
3930 7112 7.852945 GTCTTAGTACTTGTGAAATATGCATGC 59.147 37.037 11.82 11.82 0.00 4.06
3931 7113 8.338259 GGTCTTAGTACTTGTGAAATATGCATG 58.662 37.037 10.16 0.00 0.00 4.06
3932 7114 8.046708 TGGTCTTAGTACTTGTGAAATATGCAT 58.953 33.333 3.79 3.79 0.00 3.96
3933 7115 7.333423 GTGGTCTTAGTACTTGTGAAATATGCA 59.667 37.037 0.00 0.00 0.00 3.96
3934 7116 7.333423 TGTGGTCTTAGTACTTGTGAAATATGC 59.667 37.037 0.00 0.00 0.00 3.14
3935 7117 8.771920 TGTGGTCTTAGTACTTGTGAAATATG 57.228 34.615 0.00 0.00 0.00 1.78
3936 7118 9.383519 CATGTGGTCTTAGTACTTGTGAAATAT 57.616 33.333 0.00 0.00 0.00 1.28
3937 7119 7.333423 GCATGTGGTCTTAGTACTTGTGAAATA 59.667 37.037 0.00 0.00 0.00 1.40
3938 7120 6.149474 GCATGTGGTCTTAGTACTTGTGAAAT 59.851 38.462 0.00 0.00 0.00 2.17
3939 7121 5.468746 GCATGTGGTCTTAGTACTTGTGAAA 59.531 40.000 0.00 0.00 0.00 2.69
3940 7122 4.994852 GCATGTGGTCTTAGTACTTGTGAA 59.005 41.667 0.00 0.00 0.00 3.18
3941 7123 4.039852 TGCATGTGGTCTTAGTACTTGTGA 59.960 41.667 0.00 0.00 0.00 3.58
3942 7124 4.314961 TGCATGTGGTCTTAGTACTTGTG 58.685 43.478 0.00 0.00 0.00 3.33
3943 7125 4.617253 TGCATGTGGTCTTAGTACTTGT 57.383 40.909 0.00 0.00 0.00 3.16
3944 7126 4.201851 GCATGCATGTGGTCTTAGTACTTG 60.202 45.833 26.79 0.00 0.00 3.16
3945 7127 3.941483 GCATGCATGTGGTCTTAGTACTT 59.059 43.478 26.79 0.00 0.00 2.24
3946 7128 3.055167 TGCATGCATGTGGTCTTAGTACT 60.055 43.478 26.79 0.00 0.00 2.73
3947 7129 3.270027 TGCATGCATGTGGTCTTAGTAC 58.730 45.455 26.79 7.03 0.00 2.73
3948 7130 3.625649 TGCATGCATGTGGTCTTAGTA 57.374 42.857 26.79 0.00 0.00 1.82
3949 7131 2.495155 TGCATGCATGTGGTCTTAGT 57.505 45.000 26.79 0.00 0.00 2.24
3950 7132 5.700722 AATATGCATGCATGTGGTCTTAG 57.299 39.130 37.43 0.00 37.82 2.18
3951 7133 5.593502 TGAAATATGCATGCATGTGGTCTTA 59.406 36.000 37.43 19.14 37.82 2.10
3952 7134 4.403113 TGAAATATGCATGCATGTGGTCTT 59.597 37.500 37.43 23.66 37.82 3.01
3953 7135 3.955551 TGAAATATGCATGCATGTGGTCT 59.044 39.130 37.43 17.13 37.82 3.85
3954 7136 4.310357 TGAAATATGCATGCATGTGGTC 57.690 40.909 37.43 29.39 37.82 4.02
3955 7137 4.100344 ACATGAAATATGCATGCATGTGGT 59.900 37.500 37.43 24.26 45.40 4.16
3956 7138 4.627058 ACATGAAATATGCATGCATGTGG 58.373 39.130 37.43 22.32 45.40 4.17
3957 7139 5.285651 TGACATGAAATATGCATGCATGTG 58.714 37.500 37.43 25.94 46.63 3.21
3959 7141 6.836577 TTTGACATGAAATATGCATGCATG 57.163 33.333 37.43 24.87 45.32 4.06
3960 7142 7.851387 TTTTTGACATGAAATATGCATGCAT 57.149 28.000 33.92 33.92 45.32 3.96
3988 7170 9.388506 TCAAAATTGGTGCTTAAAAGATTTTGA 57.611 25.926 16.97 16.97 43.74 2.69
3989 7171 9.654417 CTCAAAATTGGTGCTTAAAAGATTTTG 57.346 29.630 14.39 14.39 41.10 2.44
3990 7172 8.839343 CCTCAAAATTGGTGCTTAAAAGATTTT 58.161 29.630 0.00 0.00 0.00 1.82
3991 7173 7.992608 ACCTCAAAATTGGTGCTTAAAAGATTT 59.007 29.630 0.00 0.00 34.90 2.17
3992 7174 7.442062 CACCTCAAAATTGGTGCTTAAAAGATT 59.558 33.333 0.15 0.00 45.68 2.40
3993 7175 6.930722 CACCTCAAAATTGGTGCTTAAAAGAT 59.069 34.615 0.15 0.00 45.68 2.40
3994 7176 6.279882 CACCTCAAAATTGGTGCTTAAAAGA 58.720 36.000 0.15 0.00 45.68 2.52
3995 7177 6.529463 CACCTCAAAATTGGTGCTTAAAAG 57.471 37.500 0.15 0.00 45.68 2.27
4032 7214 3.725459 CACGCGTGCATTGGAGCA 61.725 61.111 28.16 0.00 43.35 4.26
4042 7224 2.355126 ACTCTCAGTGCACGCGTG 60.355 61.111 34.01 34.01 0.00 5.34
4043 7225 2.049985 GACTCTCAGTGCACGCGT 60.050 61.111 5.58 5.58 0.00 6.01
4044 7226 2.050077 TGACTCTCAGTGCACGCG 60.050 61.111 12.01 3.53 0.00 6.01
4045 7227 2.378858 GCTGACTCTCAGTGCACGC 61.379 63.158 12.01 1.11 45.94 5.34
4046 7228 0.319383 AAGCTGACTCTCAGTGCACG 60.319 55.000 12.01 6.78 45.94 5.34
4047 7229 1.876322 AAAGCTGACTCTCAGTGCAC 58.124 50.000 9.40 9.40 45.94 4.57
4048 7230 3.657634 CTTAAAGCTGACTCTCAGTGCA 58.342 45.455 0.00 0.00 45.94 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.