>input_sequence_38378
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-----------------------------------------------------------------ATGCTTCCTTACTCG
ACGGCTGCCGAGGCGGAGGCCGCGCTGGGGCGGGCCATGTCCTACGCGGAGGGCGCGTGGTTTCGGTACTCGGCAGGGAT
GCCGGACTACTACCTGTACTGCCACATCGTCCCCATGCTCCTCCTCGTCTACACGCTGTCGTCGGTCCCCCTCGCACTTT
TCGAGCTCGGCGCGCCGTCCATCGCTCTGCGATACAAGCTGCAGCCCCGGGTGAAACTCTCGCCGTCCGCCTTCCTCCGG
TGCTACATGGACACCATGGGCCTCTTGCTCGTCACCATTGCTCCGCTCCATCTCGTCTCCTATCCTGCCGTCAGTGTCCA
AATATCAAGACACATAAAAAGACTACATATGCTTGCTATATATACCGAACATTAGTAC---GAG----------------
-------------------------------------------------------------------------TAGTATT
GATCCATTTGCTGTGTGCTCGATGGGCAGATGGCGGGCATCAGGACGGGGCTTCCGTTGCCGTCCGTGGGGGAGACAGTG
GCGCAGCTGGTGGTGTACTTGCTTGTGGATGACTATCTCGGCTACTGGATCCACCGTCTACTGCACGCCAAGTGGGGATA
CGACAACATCCACCGCGTCCACCATGAGTACACGGCGCCAATCGCCTTCGCCGCGCCCTACGGGCACTGGTCCGATGTGC
TCATCCTTGGAGCACCCTCCCTTGTCGGCCCGTCCATTGTGCCATGTCACATGACAACCCTCTGGCTCTGGTTGGTAATA
CGCCAGATAGAGGCCATCGACACCCACAGTGGGTAAAGTCATCAATCTCAGCTCTTAGTCTTACCTTCAGGGAAGTGGCT
TCGACGATGCAACAATCTTCTTACGGATTAAGAATTACCTCGTAAACATCGACTGTGTCAGAACTGCGTGCAGGTTTAAG
TTCCCGTTCAATCCGACAAACTATATCCCGTTCTATGGAGGAGCAGAATACCACGACTACCATCACTTTGTTGGGGAGCA
CAGTCAGAGCAACTTCTCATCCCTTTTCACCTTCTGTGATTATTTGCATGGAACGGATAAAGTAGGTGTCATGAATTTCT
TAATTAGTA-----------------------------------------------------------------------
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--------------------------TAATTAATTAAGCCAGAATGTTTCGATCTCACATTCCTTACTAGTTCCTGATCA
GTTTGCTGACATTAATTTCTTT-TTTACTGTTTCAGGGATACAGGTACCATATGGCAAACTTAGTGAAGGTATAGCTGCT
TTGCTCAACATCATGTTTCGACCTCACATTCCTTACTAGTTCCCACTTTTCCATAATTTCATCATATTCCGTACTGCACC
ATAGTGGGCATGTCAAAACGTGGACTTTAGAACAGACGTTCTCACGATTTTTATCTGCCTAGTCAATCCTGATATGCCAG
AATTGTGTATAATTAACCTCTG-AAAATACGAAATTACTCGAATATCCGTCTTCACGTGTTGAACGGCACATGAATCTTT
CTTGACACGAGCTAAATGGTAATGCATTGCGGCATTGTTTTCAATACTATTAGTTGCTTAAATGTTTGTACCACCATAGT
TTGTGAATTTGTGAAAATGCAAACTATTATCTCAAAATATGCAAAATCGAAACAATATATATAGCGAAACGAAAACTATT
ATCTCATACTCCCCCTCCAAATGAAAACTATTATCTCATACTCCCCCTCCAAATTATCTGGCAAATTGTTTTTCTAAAAC
TCAAACATGTTTGTGTTTGCTCAAGTTTTGTAAACAAAATAAGAAAATGCATGACTTGGTCTTTGCTTTATCTATTAAGC
AAAACGAAAGCCTGTTTCAAGAGAACATAAACGACCAAGGATACCCTTAGAAGAGGAGGTTGTATTATGTTGGAGATAAA
GCCATGTA---GTCTATTCTTTTTTCTCAAAACTAGTATCATACTGCAAATAAAATGCTTTTATGAAAATAAGCCATATA
ACCTTCCTTTTAAGCTACATGTAGATAATATATAGTTCTATCATGAGGGTGTGCGTTGAGAACCTAATATACTCATAGCA
ATGTTTTTTGTTGTTTACCTTAGAGTACTAAGAAGATGAAGGGGGCGGCTACGACTACTATGGCGACCCCAAGGAGTGAG
GCCAAATGA-----------------------------------------------------------------------
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---------------------------------------------------
>chr1D_1_TraesCS1D01G007100
GTTAATGTTTGTCTGAAACTCTTTTGTTTCATCAAACCAATTTTTTTTTTGTCTCCAACGTGTGTTTAGCAGCTACAATT
AATAATGTGGCCAACAGGAATCGATCATCGACCATGTGTGGATGCAGAACACATGCCTGTCCACCCGGCGAAGCATTAGT
ATGTTCTTTGTAAAGCATAGCCTACATTATTTTACTCCACTTTCAACGCTTAAATT------------------------
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-GACCTTGTTAGCCTGTGGCGGTTTGCTTTATATATAAAGCGGGGAGAAAGTTTTTTTCGATAGATAGACCGAAATCTAG
TGACCAAAGTAACTATAAGTCTAAAGATTAATAACCACTGATGTACTCTACATATGACAAAAACTTAATCGGGTGAACTA
GAAAGATCTT-----CATACCATCGGCCGCCAAAACAATTAGCCATGGCACAAACAGGTGGCTGTGATTGCTCCATGCCG
GCAAAAGTCATTCCCCCACGGCACGCTAAATGGCCAGCGAGTGTGTGGAATAGCTGTGGCACGTGTTTGCTCGGGT----
----------------------------------GTTGTAGTAACACAGTGCTTTCTGCCAGGCAAACCTAAGCTCGCCA
TCAACATTATCTCCTGCTCCGGAAGCTACTTTCCTTCATCTTCTTCTCACTGCGTGCTTTCATTTTTGTGCTCACGTGTG
CACCGGTAGCCCACATCAACGTCCAGTATAAAAGTGCAATGCTACACCTAGGAAAAGTTAAG------------------
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------------------------------------TACAGAATTTACGTAACAGGCAA---------------------
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----------------------------------------CGTGTAGGATTGGGATTGGATGGAAGGGTGTGGCAGGGGC
CCACACGGATGAAAATCAGGGGGGCGATAGATTTGTTAGGCAGGTTACGTAACTCTTCGTACGTTGCTTTCGTAGGTGTA
GTAATATTGAG---------------------------------------------------------------------
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----------TATAAAATGAGTGGAGAACCGGACCAAAAGCTAGCTACCCGCGGCAACTCAAGCTAATAAGCGCGAAGGG
TACGCAGGAAGTTAGAG---AGTGAAAGAAGTGAATTGAAGCCAGAATCCGTCTCAGGGGTGGATATGCTTCCTTACTCG
ACGGCTGCCGAGGCGGAGGCCGCGCTGGGGCGGGCCATGTCCTACGCGGAGGGCGCGTGGTTTCGGTACTCGGCAGGGAT
GCCGGACTACTACCTGTACTGCCACATCGTCCCCATGCTCCTCCTCGTCTACACGCTGTCGTCGGTCCCCCTCGCACTTT
TCGAGCTCGGCGCGCCGTCCATCGCTCTGCGATACAAGCTGCAGCCCCGGGTGAAACTCTCGCCGTCCGCCTTCCTCCGG
TGCTACATGGACACCATGGGCCTCTTGCTCGTCACCATTGCTCCGCTCCATCTCGTCTCCTATCCTGCCGTCAGTGTCCA
AATATCAAGACACATAAAAAGACTACATATGCTTGCTATATATACCGAACATTAGTAC---GAG----------------
-------------------------------------------------------------------------TAGTATT
GATCCATTTGCTGTGTGCTCGATGGGCAGATGGCGGGCATCAGGACGGGGCTTCCGTTGCCGTCCGTGGGGGAGACAGTG
GCGCAGCTGGTGGTGTACTTGCTTGTGGATGACTATCTCGGCTACTGGATCCACCGTCTACTGCACGCCAAGTGGGGATA
CGACAACATCCACCGCGTCCACCATGAGTACACGGCGCCAATCGCCTTCGCCGCGCCCTACGGGCACTGGTCCGATGTGC
TCATCCTTGGAGCACCCTCCCTTGTCGGCCCGTCCATTGTGCCATGTCACATGACAACCCTCTGGCTCTGGTTGGTAATA
CGCCAGATAGAGGCCATCGACACCCACAGTGGGTAAAGTCATCAATCTCAGCTCTTAGTCTTACCTTCAGGGAAGTGGCT
TCGACGATGCAACAATCTTCTTACGGATTAAGAATTACCTCGTAAACATCGACTGTGTCAGAACTGCGTGCAGGTTTAAG
TTCCCGTTCAATCCGACAAACTATATCCCGTTCTATGGAGGAGCAGAATACCACGACTACCATCACTTTGTTGGGGAGCA
CAGTCAGAGCAACTTCTCATCCCTTTTCACCTTCTGTGATTATTTGCATGGAACGGATAAAGTAGGTGTCATGAATTTCT
TAATTAGTA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TAATTAATTAAGCCAGAATGTTTCGATCTCACATTCCTTACTAGTTCCTGATCA
GTTTGCTGACATTAATTTCTTT-TTTACTGTTTCAGGGATACAGGTACCATATGGCAAACTTAGTGAAGGTATAGCTGCT
TTGCTCAACATCATGTTTCGACCTCACATTCCTTACTAGTTCCCACTTTTCCATAATTTCATCATATTCCGTACTGCACC
ATAGTGGGCATGTCAAAACGTGGACTTTAGAACAGACGTTCTCACGATTTTTATCTGCCTAGTCAATCCTGATATGCCAG
AATTGTGTATAATTAACCTCTG-AAAATACGAAATTACTCGAATATCCGTCTTCACGTGTTGAACGGCACATGAATCTTT
CTTGACACGAGCTAAATGGTAATGCATTGCGGCATTGTTTTCAATACTATTAGTTGCTTAAATGTTTGTACCACCATAGT
TTGTGAATTTGTGAAAATGCAAACTATTATCTCAAAATATGCAAAATCGAAACAATATATATAGCGAAACGAAAACTATT
ATCTCATACTCCCCCTCCAAATGAAAACTATTATCTCATACTCCCCCTCCAAATTATCTGGCAAATTGTTTTTCTAAAAC
TCAAACATGTTTGTGTTTGCTCAAGTTTTGTAAACAAAATAAGAAAATGCATGACTTGGTCTTTGCTTTATCTATTAAGC
AAAACGAAAGCCTGTTTCAAGAGAACATAAACGACCAAGGATACCCTTAGAAGAGGAGGTTGTATTATGTTGGAGATAAA
GCCATGTA---GTCTATTCTTTTTTCTCAAAACTAGTATCATACTGCAAATAAAATGCTTTTATGAAAATAAGCCATATA
ACCTTCCTTTTAAGCTACATGTAGATAATATATAGTTCTATCATGAGGGTGTGCGTTGAGAACCTAATATACTCATAGCA
ATGTTTTTTGTTGTTTACCTTAGAGTACTAAGAAGATGAAGGGGGCGGCTACGACTACTATGGCGACCCCAAGGAGTGAG
GCCAAATGAACCACATCGACTATCTATGCTTGGGATGGAGTTGTTGTGCATTGTTACTTTATGCTGCTTTTATGAATGTA
ATAAAAGTCATGAGACATTTTAAAATGTATGCCTTGTGACAACAATAATCAAACTTTGTAATATCTTTCTTGCA-TTTTG
CAATGATACCATGTCGTTTTATCGTCAATAAAAGATCCTGGATTGACCAAAGCAAGGTGCTAGTTTGCACGTTCCCACAA
GGTTCTTATGAGCGAACACATAAGGGAACTCTCGGTATCATGTCTCACATGCAAGCCTTGTATTCTTAATCAGCAAATAT
GTGATGTTCAATACACGGTCTGGACATATATCAACGCAAAAACACAGCCAAAAGTCCCAGAATAGAACCCTAACTAATGC
TGAGAAGAAATAGCTTT-TTTATAAAGTAAGAACAAATAACTAACAAATTGTGTGAATTGGATTATCTTTGATGTCCGGT
TGAAACTGTTGTTGCTCAAGAACCAGCTTTCAATAGGGGTACCATTAGCAATGTGGTTAGTGTGCAGTAGACAGGGGTGT
GTACAATGACCTAGCGAATGTCGACATACATTAACAAAGTGACAAAATGACGTTTTAAAATAAATAAAGAGTCATTGAGG
TTGGTGTGTTCAGCACTGGGAACACTTGGAATGTTGTCTCTTCCGAAGTCCCACGACACTCACAGTCTCAGAGCCTTAAT
AGGTCCCTCCGACGAGTGCTCCTGACCTCCGGTCTAGCCTTGGCTCTAGGAAGGGAGTGAGTGACCGGATGGTGACTTTT
GAGCACGGGCACATTGAGCCCCTTTTTTATGTTAAAGAAAAAATGGATTCTTACAACCAAAGAGCATGCATGCATGCATA
TTTCACAAGTACTAAGACCACATGCATGCATATTTCATGTCAAAAAAATTCAAAATCTTTTAAGCACCAATTTTGAGGTG
TTAAAAAAAAACATGCTCCAATGCACGCGTGCACTGAGAGTCAGCTTTAAG
>chr1D_1
GTTAATGTTTATCTGAAACTCTTTTGTTTCATCAAACCATTATTTTTTTCGTCTCTAAAGTTAGTTTAGCACCTACAATT
AACAATGTTGCCAAGAGGAATCAATCATAGACCATGTGTAATGTAGAGAAGAA-GCCTGTCGACCGGGTGAAGCATTAGT
ATGTGCTTTGTAAAGCATAGCCTACACTATTTTACTCCACTTTCAACGTTGAAATTCAAAATTTCCGACAGTTAGGGATG
GTGCAAAAAAAAAGTGGGGGGCAGGGGTACACTTAAAAAACACTCTCTTGGAAAGTCCAGTATTCTTTATGAAAATTTGT
TCAGCTGTGCCCTCAGCATAACCCATTCGTACTCCTGTTATGTATACACTGTGTGGTGTGTGTGTTGCGTTGGATTGTTT
GGACCTTGTTAGCCTATGGCGGTTTGTTTTATATATAAAGTGGGGAGAACGC-TTTTTCGACAAATAGACCGAAATCTAG
ATACCAAAGTAATTATAAGTCTAAAGATTAATATCCACTGATGTACTCTACATATTACAAAAACTTAATCGGGTGAACTA
GAAAGATCTTTGGCACATACTATCGGCCGCCAGAACAATGAACCATGGCAC-AACAGGTGGCAGTGATTGCTCCATGCCG
GCAAATGTCATTC-CCCATGGCACGCTAACTGGCCAACGAGTGTCTGGAATAGCTGTGGCATGTGTTTGCTCGGGT----
----------------------------------GCTCGT--------------------------------------CA
TCAACATTATCTCCTGCTCCGGAAGCTACTTTCCTTCACCTTTTTCTAAGAGCGTGTTTTCATTTTTGTGGTCACGTGTA
TCTTGTTTAGAAGTTGTTTGCCAAAATGAAATCAACATAAAGAATAAATGATATCTCAATTCCAGAAGAAACATATTGAG
AACTCGTTTATCAAACGGGGCAACCGTAATAAGGGTCGGTATGCCGACAAATTGAGGTTGCGACGATTCGCAAAAAGGTT
TTCATGGAAAAGAATTAATAG----------------TGCGTCGGCTAGTAA-GTACTTTTTCTGTTTGGTTTACACTTC
GATCGTAAATTAAACTAATGGCATCATATTTAT--GTAACACATGCCGATCATATACAGTTAGTTAATTTAATTGTCAGA
GTGACCCAAACAAGAAGCGGGACTTATAAACCCGGGCAGAGGAAGTATGTCTTTCTGAAACCAACTAACAAAGATATCAT
CACAAAATACTCCTACTATATAATTGTGAACATCTTAAACTAATTACTCGGCTCATGAGTATATATTAAATCATTGCTGT
TGACATAAAAATTATTGTTCATTTCACAAAGACATAGGAGTAAAACAGTCTGTTCGTTCCTTGTTTCACTTTCTGTTATG
GGCATAGCAAATGTACAAGAATCACCATCTGAAGTGTCATGTAAATGAAAAATTAAAAGATCATCTACATTAATCAGGAA
CAGTACAGATGTTCTGAGCCTTTTTTTCGTAGATCCTACAGAATTTAGCAATCTGAAAATATAGAAAGCACTCGGCATCC
CCTCAT---TTTTTTTAGAAATCAACAAAAAGGCTTGTGCCAAACGGGAAAATATCTGGTGCACCGGAGCTTGTGGTGCT
ACCGGTGCACCGAACTCACATTGTGCTTTTAAAATGTTCAAAAAAATCTGAAAAAAATTTAGCACACTCACACAACATCA
ATGTAGGTTCTCACAAAAATTCGATTCAAAATTCGAAACATAATTTGAAAAACAAAAATGACAAATTTCAACCCTGAATA
GTACATAACATAACTTGCGCTTTAGATTTGGCCCATTATCATACTGATGTCAACTTTGTCATTTTTGTATCTCAAAAAAT
ATTTCAAATTTTTATACAAAATTTTGTGACATCGTACATTGATGTCATGTTAACATGCTATTTTTCTCAGATTTTTTAAA
ATATTCTATGGCATCCGGTGCACCGGTAGCACAACAAGTCCGAGTGCACCGGATACATTCCCTGTGCCAAACCGTATCCA
GCAACGGCTGAGGCGGCAGTACGAACAGCAAAGTGTATTGCGTGCAGCAGTTGTATTGGATGGTTTCACATGATAGATTC
TCGCTGGATTGCCACTTGGAGCAAAATAATATAATTCATGCTTCCTTTTTTTTGTTAAACACGACATCCCGGTAAGTTCA
GTTTAATATTTTTCTCCTTTTATACATTATTTTACCACAGAATTAGTAGGTTTTATGTCTTATAAAATGTAAAACAAGAA
CACTCTTATGTATGGTTTTCATTAGTTTTAGTTGTTGCTAAACATCTATTTATGCATATGTTTTGAGCTCTTTTACTGTA
CCCCCGAATAGATATGGACCGTCTATTATCAAAATCTAAGGGTGCTGATGCATCCATACTGCTCAACTGCGCGAGGACCA
TCGCAGCGGTATCGGTACCACTGGCCGCTCCAGGTGCAGCAGTATACTTGTCGTGAGGGTGATTTAGGAAGAGAAAAAAG
TCAGCCCGCCTCATGACCGAGAGAACCCGTTCTCTTCACTTGTTCTGCTCGGCCGTAAGCACGCGCCCGTCGGCCAGGAT
TCCAGCGGCTGCCTCGTCACTTCCATATTGTCGACCATGCTCGTGGACCGATGCTGCTACGCCGCCGGCCATGAGCGTCC
ACCGCCTGTGCACCTGCATCGTCTTCCTCGCCGAGGCCTTCTCTCCTCCCGGCTCCCCTTCCTCTCCGCCGGCGGCCGCC
GCTGCATCTCGTCTTCTTCCGCGTCCCTTACTCAGCCATGGCCATGGACTGAGCGCGATTCCGACGAGCTCCTCTTCTTC
GGCAGACTCTATCAATCAACCAAAAACATAACATTTTCGTAGAAGGTGACCTATATTGACTAGGACGTGGACGTACAACG
AGGGTGATACGAGGCACGGCTGGAGGTTCAAGAACACGATGGTTAGGTCGACCAACGTCCGACGATCTAGGTCAAGCACG
CGGGCGGAGGCCAGTGGCAAGGGCGAGCTGTGAAGCCAGGACGTAGTGGCGAGTTCGACGACGTACGGTGGAGCCGACTA
GTCGTCGAGTGGGTGGCGGGGAACAGGGCGACAGCACAACCAGGACGAACATACCAATTGCTGACGGGTTAGCGTTATTT
TGAAAAACAGAAATCTGACGAGACTGCCCTCGTGAAATGAACGGCGTGGATGATTGTATACTGCTCACTTTCATCTATAA
CAGTATAGGGTATCATAAAAAAGCTCTATGTTTGAACACGGTTCCCTCAGGGCATCATCTAGTTCTTCCATTGGGACGCG
GTGTTCTATCGATAACGAAGTATGTGTGGTTTCTTCGTCAATCCTAAGATCTGCTTATTCATTCTCTTGGAGATAC---T
TATTGGCTAGGAGTAGAGTTTATGTGTGTGCGTTCATAA------------------------------GGACGAGCGTA
TACGTAATTAAGCACCTGTACTTGTAAGGTGTTTCTAGAAATAGAAGTGATGAAGTATATCAGAAACGTGATTTTGCTGG
ACATATTACGAATTCGATGGATGACTCCTGATCAGTGTGCACCGGTAGCACACATTTTGAGGCCCGCAAGTCAGGGACAT
CAACATCCCCTATAAAATTAGTGGAGAAGCAGA----GAGCTAGCTACCTGCCACAACTCAAGCTAATAAGCGCGAAGGG
TACACAGGAAGTTAGTGAACCGTGAAAGAAGTGATTTGAAGCCAAAATACGTCTCGGGGGTCGATATGCTTCCTTACTCG
ACGGCTTCCGAGGCGGAGGCTGCGCTGGGGCGGTCCATGTCCTACGCGGAGGGTGCGTGGTTTCGGTACTCGGCAGGGAT
GCCGGACTACTACCTCTACTGCCACATCGTCCCCATGCTCCTCATCGTCTACACGCTGTTGTCGGTCCCCCTCGCGCTTT
TCGAGCTCGGCGCGCCATCCATTGCTCTACGATACAAGCTGCAGCCCCGGGTGCAGCTCTCGCCGGCCGCCTTTCTCCGG
TGCTACATGGACACCATGCGCATCTTGCTTGTCACCATTGCCCCGCTCCATCTCGTCTCCTATCCTGCCGTCAAGGTCCA
AATATGAAGACACATTCAAAGACTACATATGCTTTCTCTATATACCGAACATTAGTAGTATGAG----------------
-------------------------------------------------------------------------TAGTATT
GATCCATTTGCTGTGTGCTTGACGGGCAGATGGCCGGTATCAGGACGGGGCTTCCGTTGCCGTCCGTGGGTGAGACAGTA
GCGCAGCTGGTGGTGTACTTGCTTGTGGAGGACTATCTCGGCTACTGGATCCACCGTCTGTTGCACACCAAGTGGGGATA
CGACAACATCCACCGCGTCCACCATGAGTACACGGCGCCAATAGCTTTCGCCGCGCCTTACGGGCACTGGTCCGATGTGC
TCATCCTTGGTGCGCCCTCACTTGTCGGTCCGTCCATTGTGCCATGTCACATAACAACCCTCTGGCTCTGGTTGGTAATA
CGCCAGATAGAGGCTGTCGACACCCACAGTGGGTAAAGTCATCTATCTCAGCTCTTAGTCTTACCTTCGCGGAAGCGGCT
TTGACGATGCAACAATCTTCTTACGGATATAGAATCACCTCGTAAACATCGATTCTGTCTGAACTGTATGCAGGTTTAAG
TTCCCGTTCAATCCGACAAACTATATCCCGTTCCATGGAGGAGCAGAATACCACGACTACCATCACTTTGTTGGAGAGCA
CAGCCAGAGCAACTTCTCATCCCTTTTCACCTTCTGTGATTATTTGCATGGAACGGATAAAGTAGGTGTCATGAATCTCT
TAATTAGTACTCCCTCCATTTCACAATGTGGTGCCTATAGATTTTTGTGGAAGTCAAACTTTGCCAACTTTGACCAAGTG
TATATAGAAAACTGTCTACATCTACAATACCAAACATGTACATTCTGAAACTATAACTCACGACGTATCCAATGATGTGC
ATTTGGTATTCTAGATGTACCCATTTTTCTCTATAAATATGGTCAAAGTTTGAAATGTTTGACTTTTGCAAAAATCTATA
GGCACTACATTATGGAACGGAGGGAGTAGTTAATTAAGCCAGAATGTTTCGACCTCACATTCCTTACTAGTTCCTGATCA
GTTTGCTGACATTAATTTCTTTATTTACTGTTTCAGGGATACAGGTACCACATGGCAAACTTAGTGAAGGTATAGCTGCT
TTGCTCAACATCAGGTTTCGACCTCACGTTCCTTA---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------TGTTTGCTCAAGTTTTGTAAATAAGATAATAAAATACATGACTTCGTCTTTGCTTTATCTATTAAGT
GAAATGAAAGCCTGTTTCGAGAGAACATAAACGACCAAGGATACCCTTAGAAGAGGAGGTTGTATCATGTTGGAGATAAA
GCCATGTATTCGTCTATTCTTTTCTCTCAAAACTAGTATGATATTGCAAATCAAATGCTTTTATGAAAATAAGCCATATA
ACCTTCATTTTAAGCTACATGTAGATAATATATAGTTCTATCATGAGGGTGTGCGTTGAGAACCTAATATACTCATAGCA
ATGTTCTTTCTTGTTTACCTTAGAGTACTATGAAGATGAAGGGGGCGGCTACGACTACTATGGCGACCCCAAGGAGTGAG
GCCAAATGAACCACATCGACTATCTATGCTTGAGATGGAGTTGTTGTGCATTGTTACTTTATGCTGCTTTTATGAATGTA
ATAAAAGTCATCACACATTTTAAAATGTATGCCTTGTGACAAGAATAACCAAACTTTGTAATGTCTTTCTTGC-------
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---------------------------------------------------
>chrUn_217
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-GACCTTGTTAGCCTATGGCGGTTTGCTTTATATATAAAGTGGGGAGAAAGCTTTTTTCGATAAATAGACCAAAATCTAG
TGACCAAAGTAATTATAAGTCTAAAGTTTATTATCCACTGATGTA-TCTACATATTACAAAAACTTAGTCGGGTGAATTA
GAAAGATCTTTGGCACATACTATCGGCGAT-AGAACAATTAACCATGGCAC-TACAGGTGGCAGTGATTGCTCCATGCCG
GCAAAAGTCATTC-CCCACGGCACGCTAACTGGCCAACGAGTGTGTGGAATAGCTGTGGCACGTGTTTGCTCGGGTGTTG
TAGTGACACTGCGCTTTCTGCCAGGCAAACCTGAGCTCGT--------------------------------------CA
TCAACATTATCTCCTGCTCCGGAAGCTACTTTCCTTAACCTTTTTCTAATAGCGTGTTTTCATTTTTGTGGTCACGTGTG
TCTTGTTTTGAAGTTGTTTGCCAAAATGAAATCAACATAAAGAATAAATAATATCTCAATTCCAGAAGAAACATATTGAG
AACTCGTTTATCAAACTGGGCAACCGTAATAAGGGTCGATATGCCGACAAATTGAAGTTGCGACGATTCGCAAAAAAG-T
TTCATGGAAAAAAATTGGTAAATAGAAGTACACTTCTTGCGTCGGCTAGTAAAGTACTTTTTCTGTTTGGTTTACACTTC
GATCGTAAATTATACTAATAGAATCATATTTATATGTAACACATACCGATCATATAAAGTTAGTTAATTTAATTGTC--A
GTGACCCAAACAAGAAGCTGGACTTATAAACCCGGGCAGAGGAAGTATGTCTTTCTGAAACCAACTAACAAAGATATCAT
CACAAAATACTCCTACTATATAATTGTGAACAACTTAAACTAATTACTCGGCTCATGAGTATATATTAAATCATTGTTGT
TGACATAAAGATTATATTTCATTTCACAAAGACATAGGTGTAAAACAGTTTGTTCGTTCCTTATTTTCCTTTCTGTTATG
GGCATAGCAAATGTACAAGAATCACCATCAGAAGTGTCCTGTAAATGAAAAATTAAAAGATCATCCACATTAATCGGGAA
CAGTACATATGTTCTGAGCCTTTTTTTCATAGATCCTACAGAATTTAGCAATCTGAAAATATAGAAAGCACTCGGCATCC
CCTCAATTATTTTTTAAGAAATCAACAAAAAGGCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGTGCCAAACCGTATCCA
GCAACGTCGGAGGCGGCAGTACGAACAGCAAAGTGTATTGCGTGCAGCAGTTGTATTGGATGGTTTCACATGATAGATTC
TCGCTGGATTGCCACTTGGAGCAAAATAATATAATTCATGCTTCCTTTT--TTGTTAAACACGACATCACGGTAAGTTCA
GTTTAATATTTTTCTCCTTTTATACATTATTTTACCACAGAATCAGTAGGTTTTATGTCTTATAAAATGTAAAACGAGAA
CACTCTTATGTATGGTTTTCATTGGTTTTAGTTGTTCCTAAACATCTATTTATGCATATGTTTT----------------
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----------------------------------AACACGGCTCCCTCGGGGCATCATCTTGTTCTTCCATTGGGACGCG
GTGTTCTATCGATAACGAGGTACGTGTGGTTTCTTCGTCAATCCTAAGATCTGCTTATTCATTCTCTTGGAGATACTTAT
TATTGGCTAGGAGTAGAGTTTATGTGTGTGCGTTCATAAGGACGAGCGTTTATGTGTGTGCGTTCATAAGGACGAGCGTA
TACGTAATTAAGCGCCTGTGCTTGTAAGGTGTTTCTAGAAAGAGAAGAGATGAAGTATATCAGAAACGTGATTTTGCTGG
ATATATTACGAGTTCGATGGATGACTCCTGATCAGTGCGTACCGGTACCGCACATTTCGGGGCCCGCAAGTCAGGGACAT
CAACATCCCCTATAAAATCAGTGGAGAAACGGACTTTGAGCTAGCTACCTGCCACAACTCAAGCTAATAAGCGCGAAGGG
TACGCAGGAAGTTAGAGAATAGTGAAAGAAGTGAATTGAAGCCAAAATCCGTCTCCGGGGTCGATATGCTTCCTTACTCG
ACGGTGGCTGAGGCAGAGGCCGCGCTGGCGCGGTCCATGTCCTATGCGGAGGGCGCGTGGTTTCGGTACACGGCAGGGAT
GCCGGACTACTACCTGTACTGCCACATCGTCCCCATGCTCCTCCTCGTCTACACACTGTCGTCGGTCCCCCTTGCACTTT
TCGAGCTCGGCGCGCCGTCCATGGCTCTCCGATACAAGCTGCAGCCCCGGGTGCAGCTCTCGCCGGCCGCGTTCCTCCGC
TGCTACATGGACACCATGTGCCTGTTGCTCGTCACCATTGCCCCGCTCCATCTCGTATCCTATCCTGCCGTGAAGGTCCA
-ATAGCAAGACAGATACAAAAACTACATATGCTTGGACGTGCTAACTTACATACTACTCCCGCCGTAAACTAATATAAAA
GCGTTTAGATCATTATATTTTAATGATCTAAACACTTTTATATTAGCCTACAGAGGGAGTATATACCTCACATTAGTATT
GATACGTTTACTGTATGCTCGACGGACAGACGGCCGGCATCAGGACAGGGCCTCCATTGCCGTCCGTGGGGGAGACAGTG
GCGCAGCTTGTGGTGTACTTGCTTGTGGATGACTATCTCGGCTACTGGATCCACCGTCTGCTGCACACCAAGTGGGGATA
CGACAACATCCACCGCGTCCACCATGAGTACACGGCGCCAATCGCCTTCGCCGCGCCGTACGGGCACTGGTCCGATGTGC
TCATCCTTGGAGCACCCTCCCTTGTCGGCCCGTCCATTGTGCCATGTCACATAACAACTCTCTGGCTCTGGTTGGTAATA
CGCCAGATAGAGGCCATCGACACCCACAGTGGGTAAAGTCATCTATCTCAGCTCTTACTCTTACCTTCGGGGAAGCGACT
TCGACGATGCAACAATCT-------GATTTAGAATCACCTCGTAAACATGGATTGTGTCTGAACTGCATGCAGGTTTAAG
TTCCCGTTCAATCCGACAAACTATATCCCGTTCTATGGAGGAGCAGAATACCACGACTATCATCACTTTGTTGGAGAGCA
CAGCCAGAGCAACTTCTCATCCCTTTTCACCTTCTGTGATTATTTGCATGGAACGGATAAAGTAGGTGTCATGAATTTCT
TAATTAGTA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATTAATTAAGCCAGAATGTTTCGACCTCACAATCCTTACTAGTTCCTGATCA
GTTTGCTGACATTAACTTCTTTATTTACTGTTTCAGGGATACAGATACCACATGGCAAACTTAGTGAAGGTATAGTTGCT
TTGCTCAACATCATGTTTTGACCTCACATTCCTTACTAGTTCCGATGTTTCCATAATTTCATCATATTCCGTACTTCAGC
ATAGTGGGCATGTCAAAACATGGCCTTTGGAACAGATGTTCTCACGATTTTTATCTGCCTAATAAATCCTGATATGGAAG
AATTGTGTGTAATTAAACTCTGCAAAATACGAAATTAATCGAATATCCGTCTTCACGTGTTGAACGGCACATGAATCTTT
CTTGACACTAGCTAAATGGTCATGCATTGCGACATTTTTTTCAATACTATTAGTTGCTTAAATGTTTGTTCCACCATAGT
TCGTGAATTCGTGAAAATGAAAACTATTATCCCAAAATATGCAAAATTGAAACAACCACACACACACACACACACACACA
CACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATAT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATGCTTTTATGAAAATAAGCCATATA
ACCTGCCTTTTAAGCTACATGTAGATAATATATAGTTCTATCGTGAGGGTGTGCGTTGAGAACCTAATATACTCATAGGA
ATGTTTTTT-TTGTTTACCTTAGAGTACTATGAAGATGAAGGGGGCGTCTACGGCTACTATGGCAACCCCAAGGAGTGAG
GCCAAATGAACCACATCGACTATCTATGCTTGAGATGTAGTTGTTGTGCATTGTTACTTTATGCTGCTTTTATTAATGTA
ATAAAAGTCATTAGACATTTTAAAATGTATGCCTTGCGACAAGAATTATCAAACTTTGTAATATCTTTCTTCGCGTTTTG
CAATGATACCATGTCGTTTTATCGTCAATAAAAGATCCTGGATTGACCAAAGCAAGGTGCTAGTTTGCGCGTTCCCACAA
GGTTCTTATGCACGAACACATAAGGGAACTCTCGATATCATGTCTCACATTCAAGCCTTGTATTCTTAATCAGCAAACAT
GTGGTGTTCAATACACGGTCTGGACATACATCAACGCGAAAACACAGTCAAAAGTCCTAGAATAGAACCCTAAATAATGC
TGAAAGGAAATAGCTTTATTTATAAAGATAGAAGAAATAGCTAACAAATCGTGTGAATTGGATTATCTTTGACGTCCCGT
TGAAAGTGTT-TTTCTCAAGAACCAACTTTCAATAGGGGTACTATTAGCAATGTGGTTAGTGTGGACTAGACAGGGGTGT
GTACAATGACCTAGCGATTGTCGACGTACATTTACAAAGTGATAAAATGACGTTTTAAAATAAATACAGAGTTATTGAGG
TTGCTGTTGGGCG--CTGGGAACACATGGAATGTTGTCTCTTCCGAAGTCCCACGACACTCACAGTCTGAGAGCCTTAAT
AGGTCCCTCGGACGACGGCTCCTGACCTCCGGTGTAGCCTTGGCTCTAGGAAGGGATTGAGTGACCGGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>SNPs
----------S----------------------------S-S-------S-----S--S--SS--------S--------
--S-----S-----S-------S-----S----------SSSSSSSSS-SSS-S-------S---S--S-----------
----S---------------------S---------------------S-S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------S------------------------S----------S-----------S----------------
------------S--------------------S---------------------S------------------------
--------------------S-----------S--------S---------S----------S-----------------
-------------S---------------S------S-------------------------------------------
-----------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------------------------S---S----S-SS-----S-------------S---------
SSSS-S-SSSSSSSSSSSSSSSSS-S-SS--SSSSSSS-SSSS-S-SS--SS-SSSSSSSSS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SSS-S-S-SS-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S--S-S-S-S---------SSSSSSS--SS--SSS-
S-S-SS-SS--SS-S-SS-S-SSSSSSS-S--SSS-S-S--SSSS-SSS-SSSSS-SSSS---SSSSSSSS---S--SS-
--SSS--SSSS---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S---------S-----SSSS-----------S--SS--------------------------
--------------------------------------------S----------S-----S------------------
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
----------------------S-----S------------------------S-S---------S--------------
------------------S----------------------S-------------------------------SS-----
----------------S--------------------S-------------------S----------------------
--------------------------------------------------------------------------------
----------------------S-----------S---------------------------------------------
-----------------------------------------------------------S------S-------------
---------------------------------------------------------S----------------------
----------------------------------------------------S---------------------------
-------------------------------------------S------------------------S------S----
-----------------------------S-----S----------------S------S-------S------------
--------------------------------------------------------------------------S-----
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------S-----------------------------
-------------------------------------------S-SS----------------------------S--S-
-------------------S---S----S-------S------------------------S-S------------SS--
--------S-------S--------------------S------------------------------------------
--------S-----------S----------S----S--------------------------------S----------
-S-------S---------S-----------S---------------S-------SSSSSSSSS-SS-SSS-S-SSS-SS
SS-S--S--S-S-S-S-SS-SSS-S-SSS-SSSSSSS-S-SSSSSSSSSSS-SSS-SSSS-SS-SSSSSS-S-S-SSSSS
SSSSSSSSSSSSS---------------------S--S----S-----S--------S---------------------S
S---S-------------S----------------------------------------------S--------------
-----------------------S---------------S---S-------S----------------------------
--------------------------------------------------------------------------------
---------S--------------------S-------------------------------------------------
--------------------------------S-----------------------------------------------
-----------S------------------------------S------------------------------S------
--------------------------------------------------------------------S-----------
----------SS----------------------S---------------S--------------------------S--
---S------------------------S--------S---------S---------S---------------S------
---S-S---------------------SS----S-----S---------S----------------------S----S--
-----S----S--S-----------S----------------S---------------------S-S-------------
-----------------S-------S------S---------S-----------------------S-----S-------
---S---SSSSS-SS----------S------------------------------------------S-----------
---------S-----SS----------------S----------------------S------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2134
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AGGCAACGTGTAGGATTGGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_4875
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAGCA
CAGTCAGAGCAACT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>forward_4122
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TCTTGCTCGTCACCATTGCT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_5436
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------------GCACC
ATAGTGGGCATGTCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------
>forward_4884
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACTTTGTTGGGGAGCA
CAGT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_7037
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTTT
GAGCACGGGCACATTG----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
