Multiple sequence alignment - TraesCS1B01G478500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G478500 chr1B 100.000 2738 0 0 1 2738 686847540 686844803 0.000000e+00 5057
1 TraesCS1B01G478500 chr1D 87.833 2030 137 55 294 2290 493773751 493771799 0.000000e+00 2279
2 TraesCS1B01G478500 chr1A 87.837 1225 63 27 709 1889 592092816 592091634 0.000000e+00 1358
3 TraesCS1B01G478500 chr3D 88.800 125 13 1 89 212 289105250 289105374 4.720000e-33 152
4 TraesCS1B01G478500 chr3B 88.800 125 13 1 89 212 381756323 381756447 4.720000e-33 152
5 TraesCS1B01G478500 chr3A 88.000 125 14 1 89 212 379823191 379823315 2.200000e-31 147
6 TraesCS1B01G478500 chr3A 89.815 108 10 1 92 198 384188724 384188617 1.320000e-28 137
7 TraesCS1B01G478500 chr7D 87.273 110 13 1 107 215 153632311 153632202 1.030000e-24 124
8 TraesCS1B01G478500 chr7A 87.156 109 14 0 108 216 138180186 138180294 1.030000e-24 124
9 TraesCS1B01G478500 chr4A 83.193 119 20 0 98 216 585593741 585593623 2.880000e-20 110
10 TraesCS1B01G478500 chr2A 83.193 119 20 0 98 216 195742170 195742052 2.880000e-20 110
11 TraesCS1B01G478500 chr5D 82.353 119 21 0 98 216 20754334 20754216 1.340000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G478500 chr1B 686844803 686847540 2737 True 5057 5057 100.000 1 2738 1 chr1B.!!$R1 2737
1 TraesCS1B01G478500 chr1D 493771799 493773751 1952 True 2279 2279 87.833 294 2290 1 chr1D.!!$R1 1996
2 TraesCS1B01G478500 chr1A 592091634 592092816 1182 True 1358 1358 87.837 709 1889 1 chr1A.!!$R1 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.179006 CTATTGGGAGGCAAGAGGGC 60.179 60.0 0.0 0.0 43.8 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2303 2387 0.034896 CACACCTCGCCCTTACAGTT 59.965 55.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.280628 CCAAGCTTGGTCGTTAGATCC 58.719 52.381 33.46 0.00 43.43 3.36
32 33 2.280628 CAAGCTTGGTCGTTAGATCCC 58.719 52.381 19.14 0.00 0.00 3.85
33 34 1.568504 AGCTTGGTCGTTAGATCCCA 58.431 50.000 0.00 0.00 0.00 4.37
34 35 2.119495 AGCTTGGTCGTTAGATCCCAT 58.881 47.619 0.00 0.00 0.00 4.00
35 36 2.158900 AGCTTGGTCGTTAGATCCCATG 60.159 50.000 0.00 0.00 0.00 3.66
36 37 2.420129 GCTTGGTCGTTAGATCCCATGT 60.420 50.000 0.00 0.00 0.00 3.21
37 38 2.979814 TGGTCGTTAGATCCCATGTG 57.020 50.000 0.00 0.00 0.00 3.21
38 39 1.134521 TGGTCGTTAGATCCCATGTGC 60.135 52.381 0.00 0.00 0.00 4.57
39 40 1.139058 GGTCGTTAGATCCCATGTGCT 59.861 52.381 0.00 0.00 0.00 4.40
40 41 2.474816 GTCGTTAGATCCCATGTGCTC 58.525 52.381 0.00 0.00 0.00 4.26
41 42 2.101582 GTCGTTAGATCCCATGTGCTCT 59.898 50.000 0.00 0.00 0.00 4.09
42 43 2.766263 TCGTTAGATCCCATGTGCTCTT 59.234 45.455 0.00 0.00 0.00 2.85
43 44 3.126831 CGTTAGATCCCATGTGCTCTTC 58.873 50.000 0.00 0.00 0.00 2.87
44 45 3.471680 GTTAGATCCCATGTGCTCTTCC 58.528 50.000 0.00 0.00 0.00 3.46
45 46 0.842635 AGATCCCATGTGCTCTTCCC 59.157 55.000 0.00 0.00 0.00 3.97
46 47 0.842635 GATCCCATGTGCTCTTCCCT 59.157 55.000 0.00 0.00 0.00 4.20
47 48 1.213926 GATCCCATGTGCTCTTCCCTT 59.786 52.381 0.00 0.00 0.00 3.95
48 49 0.620556 TCCCATGTGCTCTTCCCTTC 59.379 55.000 0.00 0.00 0.00 3.46
49 50 0.745845 CCCATGTGCTCTTCCCTTCG 60.746 60.000 0.00 0.00 0.00 3.79
50 51 0.250234 CCATGTGCTCTTCCCTTCGA 59.750 55.000 0.00 0.00 0.00 3.71
51 52 1.339055 CCATGTGCTCTTCCCTTCGAA 60.339 52.381 0.00 0.00 0.00 3.71
52 53 2.426522 CATGTGCTCTTCCCTTCGAAA 58.573 47.619 0.00 0.00 0.00 3.46
53 54 2.631160 TGTGCTCTTCCCTTCGAAAA 57.369 45.000 0.00 0.00 0.00 2.29
54 55 2.925724 TGTGCTCTTCCCTTCGAAAAA 58.074 42.857 0.00 0.00 0.00 1.94
55 56 2.616842 TGTGCTCTTCCCTTCGAAAAAC 59.383 45.455 0.00 0.00 0.00 2.43
56 57 2.879026 GTGCTCTTCCCTTCGAAAAACT 59.121 45.455 0.00 0.00 0.00 2.66
57 58 3.315470 GTGCTCTTCCCTTCGAAAAACTT 59.685 43.478 0.00 0.00 0.00 2.66
58 59 3.564225 TGCTCTTCCCTTCGAAAAACTTC 59.436 43.478 0.00 0.00 0.00 3.01
59 60 3.564225 GCTCTTCCCTTCGAAAAACTTCA 59.436 43.478 0.00 0.00 0.00 3.02
60 61 4.216472 GCTCTTCCCTTCGAAAAACTTCAT 59.784 41.667 0.00 0.00 0.00 2.57
61 62 5.278512 GCTCTTCCCTTCGAAAAACTTCATT 60.279 40.000 0.00 0.00 0.00 2.57
62 63 6.072673 GCTCTTCCCTTCGAAAAACTTCATTA 60.073 38.462 0.00 0.00 0.00 1.90
63 64 7.521585 GCTCTTCCCTTCGAAAAACTTCATTAA 60.522 37.037 0.00 0.00 0.00 1.40
64 65 8.228035 TCTTCCCTTCGAAAAACTTCATTAAA 57.772 30.769 0.00 0.00 0.00 1.52
65 66 8.688151 TCTTCCCTTCGAAAAACTTCATTAAAA 58.312 29.630 0.00 0.00 0.00 1.52
66 67 9.476202 CTTCCCTTCGAAAAACTTCATTAAAAT 57.524 29.630 0.00 0.00 0.00 1.82
67 68 9.471084 TTCCCTTCGAAAAACTTCATTAAAATC 57.529 29.630 0.00 0.00 0.00 2.17
68 69 8.634444 TCCCTTCGAAAAACTTCATTAAAATCA 58.366 29.630 0.00 0.00 0.00 2.57
69 70 8.699749 CCCTTCGAAAAACTTCATTAAAATCAC 58.300 33.333 0.00 0.00 0.00 3.06
70 71 8.699749 CCTTCGAAAAACTTCATTAAAATCACC 58.300 33.333 0.00 0.00 0.00 4.02
71 72 9.243637 CTTCGAAAAACTTCATTAAAATCACCA 57.756 29.630 0.00 0.00 0.00 4.17
72 73 9.757227 TTCGAAAAACTTCATTAAAATCACCAT 57.243 25.926 0.00 0.00 0.00 3.55
73 74 9.757227 TCGAAAAACTTCATTAAAATCACCATT 57.243 25.926 0.00 0.00 0.00 3.16
74 75 9.796062 CGAAAAACTTCATTAAAATCACCATTG 57.204 29.630 0.00 0.00 0.00 2.82
75 76 9.597999 GAAAAACTTCATTAAAATCACCATTGC 57.402 29.630 0.00 0.00 0.00 3.56
76 77 8.674263 AAAACTTCATTAAAATCACCATTGCA 57.326 26.923 0.00 0.00 0.00 4.08
77 78 7.656707 AACTTCATTAAAATCACCATTGCAC 57.343 32.000 0.00 0.00 0.00 4.57
78 79 6.757237 ACTTCATTAAAATCACCATTGCACA 58.243 32.000 0.00 0.00 0.00 4.57
79 80 7.388437 ACTTCATTAAAATCACCATTGCACAT 58.612 30.769 0.00 0.00 0.00 3.21
80 81 7.879160 ACTTCATTAAAATCACCATTGCACATT 59.121 29.630 0.00 0.00 0.00 2.71
81 82 8.618702 TTCATTAAAATCACCATTGCACATTT 57.381 26.923 0.00 0.00 0.00 2.32
82 83 9.716531 TTCATTAAAATCACCATTGCACATTTA 57.283 25.926 0.00 0.00 0.00 1.40
83 84 9.149225 TCATTAAAATCACCATTGCACATTTAC 57.851 29.630 0.00 0.00 0.00 2.01
84 85 8.933807 CATTAAAATCACCATTGCACATTTACA 58.066 29.630 0.00 0.00 0.00 2.41
85 86 9.669887 ATTAAAATCACCATTGCACATTTACAT 57.330 25.926 0.00 0.00 0.00 2.29
86 87 6.971527 AAATCACCATTGCACATTTACATG 57.028 33.333 0.00 0.00 36.34 3.21
87 88 5.918426 ATCACCATTGCACATTTACATGA 57.082 34.783 0.00 0.00 34.11 3.07
88 89 5.918426 TCACCATTGCACATTTACATGAT 57.082 34.783 0.00 0.00 34.11 2.45
89 90 5.893687 TCACCATTGCACATTTACATGATC 58.106 37.500 0.00 0.00 34.11 2.92
90 91 4.736307 CACCATTGCACATTTACATGATCG 59.264 41.667 0.00 0.00 34.11 3.69
91 92 4.398988 ACCATTGCACATTTACATGATCGT 59.601 37.500 0.00 0.00 34.11 3.73
92 93 4.971830 CCATTGCACATTTACATGATCGTC 59.028 41.667 0.00 0.00 34.11 4.20
93 94 5.220912 CCATTGCACATTTACATGATCGTCT 60.221 40.000 0.00 0.00 34.11 4.18
94 95 5.878332 TTGCACATTTACATGATCGTCTT 57.122 34.783 0.00 0.00 34.11 3.01
95 96 5.469373 TGCACATTTACATGATCGTCTTC 57.531 39.130 0.00 0.00 34.11 2.87
96 97 5.178061 TGCACATTTACATGATCGTCTTCT 58.822 37.500 0.00 0.00 34.11 2.85
97 98 5.643348 TGCACATTTACATGATCGTCTTCTT 59.357 36.000 0.00 0.00 34.11 2.52
98 99 6.183360 TGCACATTTACATGATCGTCTTCTTC 60.183 38.462 0.00 0.00 34.11 2.87
99 100 6.036517 GCACATTTACATGATCGTCTTCTTCT 59.963 38.462 0.00 0.00 34.11 2.85
100 101 7.413438 GCACATTTACATGATCGTCTTCTTCTT 60.413 37.037 0.00 0.00 34.11 2.52
101 102 8.113062 CACATTTACATGATCGTCTTCTTCTTC 58.887 37.037 0.00 0.00 34.11 2.87
102 103 8.037758 ACATTTACATGATCGTCTTCTTCTTCT 58.962 33.333 0.00 0.00 34.11 2.85
103 104 8.877779 CATTTACATGATCGTCTTCTTCTTCTT 58.122 33.333 0.00 0.00 31.07 2.52
104 105 8.467402 TTTACATGATCGTCTTCTTCTTCTTC 57.533 34.615 0.00 0.00 0.00 2.87
105 106 6.279513 ACATGATCGTCTTCTTCTTCTTCT 57.720 37.500 0.00 0.00 0.00 2.85
106 107 6.696411 ACATGATCGTCTTCTTCTTCTTCTT 58.304 36.000 0.00 0.00 0.00 2.52
107 108 6.589523 ACATGATCGTCTTCTTCTTCTTCTTG 59.410 38.462 0.00 0.00 0.00 3.02
108 109 6.332735 TGATCGTCTTCTTCTTCTTCTTGA 57.667 37.500 0.00 0.00 0.00 3.02
109 110 6.929625 TGATCGTCTTCTTCTTCTTCTTGAT 58.070 36.000 0.00 0.00 0.00 2.57
110 111 7.032580 TGATCGTCTTCTTCTTCTTCTTGATC 58.967 38.462 0.00 0.00 0.00 2.92
111 112 6.332735 TCGTCTTCTTCTTCTTCTTGATCA 57.667 37.500 0.00 0.00 0.00 2.92
112 113 6.749139 TCGTCTTCTTCTTCTTCTTGATCAA 58.251 36.000 8.12 8.12 0.00 2.57
113 114 6.642950 TCGTCTTCTTCTTCTTCTTGATCAAC 59.357 38.462 3.38 0.00 0.00 3.18
114 115 6.422100 CGTCTTCTTCTTCTTCTTGATCAACA 59.578 38.462 3.38 0.00 0.00 3.33
115 116 7.042456 CGTCTTCTTCTTCTTCTTGATCAACAA 60.042 37.037 3.38 0.00 36.97 2.83
116 117 8.067189 GTCTTCTTCTTCTTCTTGATCAACAAC 58.933 37.037 3.38 0.00 34.56 3.32
117 118 6.867662 TCTTCTTCTTCTTGATCAACAACC 57.132 37.500 3.38 0.00 34.56 3.77
118 119 6.356556 TCTTCTTCTTCTTGATCAACAACCA 58.643 36.000 3.38 0.00 34.56 3.67
119 120 6.828273 TCTTCTTCTTCTTGATCAACAACCAA 59.172 34.615 3.38 0.00 34.56 3.67
120 121 7.339212 TCTTCTTCTTCTTGATCAACAACCAAA 59.661 33.333 3.38 0.00 34.56 3.28
121 122 6.795399 TCTTCTTCTTGATCAACAACCAAAC 58.205 36.000 3.38 0.00 34.56 2.93
122 123 6.603201 TCTTCTTCTTGATCAACAACCAAACT 59.397 34.615 3.38 0.00 34.56 2.66
123 124 6.377327 TCTTCTTGATCAACAACCAAACTC 57.623 37.500 3.38 0.00 34.56 3.01
124 125 6.122277 TCTTCTTGATCAACAACCAAACTCT 58.878 36.000 3.38 0.00 34.56 3.24
125 126 6.603201 TCTTCTTGATCAACAACCAAACTCTT 59.397 34.615 3.38 0.00 34.56 2.85
126 127 6.377327 TCTTGATCAACAACCAAACTCTTC 57.623 37.500 3.38 0.00 34.56 2.87
127 128 6.122277 TCTTGATCAACAACCAAACTCTTCT 58.878 36.000 3.38 0.00 34.56 2.85
128 129 6.603201 TCTTGATCAACAACCAAACTCTTCTT 59.397 34.615 3.38 0.00 34.56 2.52
129 130 6.377327 TGATCAACAACCAAACTCTTCTTC 57.623 37.500 0.00 0.00 0.00 2.87
130 131 5.299279 TGATCAACAACCAAACTCTTCTTCC 59.701 40.000 0.00 0.00 0.00 3.46
131 132 4.855340 TCAACAACCAAACTCTTCTTCCT 58.145 39.130 0.00 0.00 0.00 3.36
132 133 4.881850 TCAACAACCAAACTCTTCTTCCTC 59.118 41.667 0.00 0.00 0.00 3.71
133 134 3.467803 ACAACCAAACTCTTCTTCCTCG 58.532 45.455 0.00 0.00 0.00 4.63
134 135 2.808543 CAACCAAACTCTTCTTCCTCGG 59.191 50.000 0.00 0.00 0.00 4.63
135 136 2.326428 ACCAAACTCTTCTTCCTCGGA 58.674 47.619 0.00 0.00 0.00 4.55
136 137 2.300437 ACCAAACTCTTCTTCCTCGGAG 59.700 50.000 0.00 0.00 0.00 4.63
137 138 2.342179 CAAACTCTTCTTCCTCGGAGC 58.658 52.381 0.00 0.00 0.00 4.70
138 139 1.931635 AACTCTTCTTCCTCGGAGCT 58.068 50.000 0.00 0.00 0.00 4.09
139 140 1.931635 ACTCTTCTTCCTCGGAGCTT 58.068 50.000 0.00 0.00 0.00 3.74
140 141 1.822371 ACTCTTCTTCCTCGGAGCTTC 59.178 52.381 0.00 0.00 0.00 3.86
141 142 1.821753 CTCTTCTTCCTCGGAGCTTCA 59.178 52.381 0.00 0.00 0.00 3.02
142 143 2.430332 CTCTTCTTCCTCGGAGCTTCAT 59.570 50.000 0.00 0.00 0.00 2.57
143 144 2.167281 TCTTCTTCCTCGGAGCTTCATG 59.833 50.000 0.00 0.00 0.00 3.07
144 145 1.852633 TCTTCCTCGGAGCTTCATGA 58.147 50.000 0.00 0.00 0.00 3.07
145 146 1.753649 TCTTCCTCGGAGCTTCATGAG 59.246 52.381 0.00 0.00 0.00 2.90
157 158 3.191078 CTTCATGAGCTTCCCGATTCT 57.809 47.619 0.00 0.00 0.00 2.40
158 159 3.539604 CTTCATGAGCTTCCCGATTCTT 58.460 45.455 0.00 0.00 0.00 2.52
159 160 3.185246 TCATGAGCTTCCCGATTCTTC 57.815 47.619 0.00 0.00 0.00 2.87
160 161 2.158900 TCATGAGCTTCCCGATTCTTCC 60.159 50.000 0.00 0.00 0.00 3.46
161 162 1.275666 TGAGCTTCCCGATTCTTCCA 58.724 50.000 0.00 0.00 0.00 3.53
162 163 1.066143 TGAGCTTCCCGATTCTTCCAC 60.066 52.381 0.00 0.00 0.00 4.02
163 164 1.208293 GAGCTTCCCGATTCTTCCACT 59.792 52.381 0.00 0.00 0.00 4.00
164 165 1.630878 AGCTTCCCGATTCTTCCACTT 59.369 47.619 0.00 0.00 0.00 3.16
165 166 2.010497 GCTTCCCGATTCTTCCACTTC 58.990 52.381 0.00 0.00 0.00 3.01
166 167 2.355209 GCTTCCCGATTCTTCCACTTCT 60.355 50.000 0.00 0.00 0.00 2.85
167 168 3.526534 CTTCCCGATTCTTCCACTTCTC 58.473 50.000 0.00 0.00 0.00 2.87
168 169 1.831736 TCCCGATTCTTCCACTTCTCC 59.168 52.381 0.00 0.00 0.00 3.71
169 170 1.834263 CCCGATTCTTCCACTTCTCCT 59.166 52.381 0.00 0.00 0.00 3.69
170 171 2.159028 CCCGATTCTTCCACTTCTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
171 172 2.497675 CCGATTCTTCCACTTCTCCTCA 59.502 50.000 0.00 0.00 0.00 3.86
172 173 3.133721 CCGATTCTTCCACTTCTCCTCAT 59.866 47.826 0.00 0.00 0.00 2.90
173 174 4.367450 CGATTCTTCCACTTCTCCTCATC 58.633 47.826 0.00 0.00 0.00 2.92
174 175 4.702831 GATTCTTCCACTTCTCCTCATCC 58.297 47.826 0.00 0.00 0.00 3.51
175 176 3.481559 TCTTCCACTTCTCCTCATCCT 57.518 47.619 0.00 0.00 0.00 3.24
176 177 3.796111 TCTTCCACTTCTCCTCATCCTT 58.204 45.455 0.00 0.00 0.00 3.36
177 178 3.517100 TCTTCCACTTCTCCTCATCCTTG 59.483 47.826 0.00 0.00 0.00 3.61
178 179 3.190383 TCCACTTCTCCTCATCCTTGA 57.810 47.619 0.00 0.00 0.00 3.02
180 181 2.419851 CCACTTCTCCTCATCCTTGAGC 60.420 54.545 0.00 0.00 46.76 4.26
181 182 2.500910 CACTTCTCCTCATCCTTGAGCT 59.499 50.000 0.00 0.00 46.76 4.09
182 183 2.765699 ACTTCTCCTCATCCTTGAGCTC 59.234 50.000 6.82 6.82 46.76 4.09
183 184 2.844654 TCTCCTCATCCTTGAGCTCT 57.155 50.000 16.19 0.00 46.76 4.09
184 185 3.113191 TCTCCTCATCCTTGAGCTCTT 57.887 47.619 16.19 0.00 46.76 2.85
185 186 3.448934 TCTCCTCATCCTTGAGCTCTTT 58.551 45.455 16.19 0.00 46.76 2.52
186 187 3.197333 TCTCCTCATCCTTGAGCTCTTTG 59.803 47.826 16.19 4.82 46.76 2.77
187 188 2.909006 TCCTCATCCTTGAGCTCTTTGT 59.091 45.455 16.19 0.00 46.76 2.83
188 189 4.096681 TCCTCATCCTTGAGCTCTTTGTA 58.903 43.478 16.19 0.00 46.76 2.41
189 190 4.161189 TCCTCATCCTTGAGCTCTTTGTAG 59.839 45.833 16.19 4.57 46.76 2.74
190 191 3.866651 TCATCCTTGAGCTCTTTGTAGC 58.133 45.455 16.19 0.00 43.11 3.58
191 192 3.261643 TCATCCTTGAGCTCTTTGTAGCA 59.738 43.478 16.19 0.00 45.30 3.49
192 193 3.769739 TCCTTGAGCTCTTTGTAGCAA 57.230 42.857 16.19 0.00 45.30 3.91
193 194 4.292186 TCCTTGAGCTCTTTGTAGCAAT 57.708 40.909 16.19 0.00 45.30 3.56
194 195 4.005650 TCCTTGAGCTCTTTGTAGCAATG 58.994 43.478 16.19 0.00 45.30 2.82
195 196 4.005650 CCTTGAGCTCTTTGTAGCAATGA 58.994 43.478 16.19 0.00 45.30 2.57
196 197 4.639310 CCTTGAGCTCTTTGTAGCAATGAT 59.361 41.667 16.19 0.00 45.30 2.45
197 198 5.448768 CCTTGAGCTCTTTGTAGCAATGATG 60.449 44.000 16.19 0.00 45.30 3.07
198 199 4.835678 TGAGCTCTTTGTAGCAATGATGA 58.164 39.130 16.19 0.00 45.30 2.92
199 200 5.247862 TGAGCTCTTTGTAGCAATGATGAA 58.752 37.500 16.19 0.00 45.30 2.57
200 201 5.706833 TGAGCTCTTTGTAGCAATGATGAAA 59.293 36.000 16.19 0.00 45.30 2.69
201 202 6.207221 TGAGCTCTTTGTAGCAATGATGAAAA 59.793 34.615 16.19 0.00 45.30 2.29
202 203 6.985117 AGCTCTTTGTAGCAATGATGAAAAA 58.015 32.000 0.00 0.00 45.30 1.94
203 204 7.609056 AGCTCTTTGTAGCAATGATGAAAAAT 58.391 30.769 0.00 0.00 45.30 1.82
204 205 7.544566 AGCTCTTTGTAGCAATGATGAAAAATG 59.455 33.333 0.00 0.00 45.30 2.32
205 206 7.543172 GCTCTTTGTAGCAATGATGAAAAATGA 59.457 33.333 0.00 0.00 42.30 2.57
206 207 9.414295 CTCTTTGTAGCAATGATGAAAAATGAA 57.586 29.630 0.00 0.00 0.00 2.57
207 208 9.414295 TCTTTGTAGCAATGATGAAAAATGAAG 57.586 29.630 0.00 0.00 0.00 3.02
208 209 8.537049 TTTGTAGCAATGATGAAAAATGAAGG 57.463 30.769 0.00 0.00 0.00 3.46
209 210 7.230849 TGTAGCAATGATGAAAAATGAAGGT 57.769 32.000 0.00 0.00 0.00 3.50
210 211 7.669427 TGTAGCAATGATGAAAAATGAAGGTT 58.331 30.769 0.00 0.00 0.00 3.50
211 212 8.149647 TGTAGCAATGATGAAAAATGAAGGTTT 58.850 29.630 0.00 0.00 0.00 3.27
212 213 8.992073 GTAGCAATGATGAAAAATGAAGGTTTT 58.008 29.630 0.00 0.00 32.94 2.43
213 214 8.454570 AGCAATGATGAAAAATGAAGGTTTTT 57.545 26.923 0.00 0.00 42.29 1.94
219 220 5.900339 GAAAAATGAAGGTTTTTCCCGAC 57.100 39.130 11.73 0.00 45.56 4.79
220 221 3.636282 AAATGAAGGTTTTTCCCGACG 57.364 42.857 0.00 0.00 36.75 5.12
221 222 1.530323 ATGAAGGTTTTTCCCGACGG 58.470 50.000 6.99 6.99 36.75 4.79
222 223 0.180878 TGAAGGTTTTTCCCGACGGT 59.819 50.000 13.94 0.00 36.75 4.83
223 224 0.589708 GAAGGTTTTTCCCGACGGTG 59.410 55.000 13.94 4.52 36.75 4.94
224 225 0.820482 AAGGTTTTTCCCGACGGTGG 60.820 55.000 13.94 0.00 36.75 4.61
225 226 2.640989 GTTTTTCCCGACGGTGGC 59.359 61.111 13.94 0.00 0.00 5.01
226 227 2.973600 TTTTTCCCGACGGTGGCG 60.974 61.111 13.94 0.00 0.00 5.69
237 238 4.629523 GGTGGCGGTGTCGGGAAA 62.630 66.667 0.00 0.00 36.79 3.13
238 239 3.047877 GTGGCGGTGTCGGGAAAG 61.048 66.667 0.00 0.00 36.79 2.62
239 240 4.323477 TGGCGGTGTCGGGAAAGG 62.323 66.667 0.00 0.00 36.79 3.11
240 241 4.324991 GGCGGTGTCGGGAAAGGT 62.325 66.667 0.00 0.00 36.79 3.50
241 242 3.047877 GCGGTGTCGGGAAAGGTG 61.048 66.667 0.00 0.00 36.79 4.00
242 243 2.358247 CGGTGTCGGGAAAGGTGG 60.358 66.667 0.00 0.00 0.00 4.61
243 244 2.033602 GGTGTCGGGAAAGGTGGG 59.966 66.667 0.00 0.00 0.00 4.61
244 245 2.522367 GGTGTCGGGAAAGGTGGGA 61.522 63.158 0.00 0.00 0.00 4.37
245 246 1.003718 GTGTCGGGAAAGGTGGGAG 60.004 63.158 0.00 0.00 0.00 4.30
246 247 2.046217 GTCGGGAAAGGTGGGAGC 60.046 66.667 0.00 0.00 0.00 4.70
247 248 3.327404 TCGGGAAAGGTGGGAGCC 61.327 66.667 0.00 0.00 0.00 4.70
248 249 4.426313 CGGGAAAGGTGGGAGCCC 62.426 72.222 0.00 0.00 35.40 5.19
249 250 3.264845 GGGAAAGGTGGGAGCCCA 61.265 66.667 3.58 3.58 45.02 5.36
296 297 4.545706 CGGCGGCAGCTATTGGGA 62.546 66.667 10.53 0.00 44.37 4.37
297 298 2.592861 GGCGGCAGCTATTGGGAG 60.593 66.667 9.17 0.00 44.37 4.30
300 301 2.597340 GGCAGCTATTGGGAGGCA 59.403 61.111 0.00 0.00 0.00 4.75
307 308 0.179006 CTATTGGGAGGCAAGAGGGC 60.179 60.000 0.00 0.00 43.80 5.19
327 328 2.671963 GCGGGTGGTGGGAAGTTC 60.672 66.667 0.00 0.00 0.00 3.01
385 387 1.428370 TACATCATGCGCGGTCAAGC 61.428 55.000 8.83 0.00 0.00 4.01
398 400 3.799035 CGGTCAAGCGATGTATATTTGC 58.201 45.455 0.00 0.00 0.00 3.68
481 483 1.133025 GCATCATTTGTTGGAGGGACG 59.867 52.381 0.00 0.00 0.00 4.79
511 513 8.836268 TTAACCAAAGTGACGTATATTTCTGT 57.164 30.769 0.00 0.00 0.00 3.41
539 542 1.043116 TAGGAGACGCACCCATGGAG 61.043 60.000 15.22 6.55 0.00 3.86
557 560 2.159282 GGAGCTGCCAAGAATGAATGTG 60.159 50.000 0.00 0.00 36.34 3.21
559 562 2.895404 AGCTGCCAAGAATGAATGTGTT 59.105 40.909 0.00 0.00 0.00 3.32
602 605 4.809426 GTGAGGATATAAGAAACACACCCG 59.191 45.833 0.00 0.00 0.00 5.28
630 633 2.827322 TCTGGGCCTGTCAAAAATGATG 59.173 45.455 4.53 0.00 0.00 3.07
632 635 3.443052 TGGGCCTGTCAAAAATGATGAT 58.557 40.909 4.53 0.00 0.00 2.45
634 637 5.022122 TGGGCCTGTCAAAAATGATGATTA 58.978 37.500 4.53 0.00 0.00 1.75
635 638 5.105392 TGGGCCTGTCAAAAATGATGATTAC 60.105 40.000 4.53 0.00 0.00 1.89
636 639 5.127682 GGGCCTGTCAAAAATGATGATTACT 59.872 40.000 0.84 0.00 0.00 2.24
637 640 6.268566 GGCCTGTCAAAAATGATGATTACTC 58.731 40.000 0.00 0.00 0.00 2.59
638 641 6.096001 GGCCTGTCAAAAATGATGATTACTCT 59.904 38.462 0.00 0.00 0.00 3.24
639 642 7.192232 GCCTGTCAAAAATGATGATTACTCTC 58.808 38.462 0.00 0.00 0.00 3.20
649 652 8.797350 AATGATGATTACTCTCAAATGACACA 57.203 30.769 0.00 0.00 0.00 3.72
650 653 7.601073 TGATGATTACTCTCAAATGACACAC 57.399 36.000 0.00 0.00 0.00 3.82
651 654 6.595326 TGATGATTACTCTCAAATGACACACC 59.405 38.462 0.00 0.00 0.00 4.16
652 655 5.245531 TGATTACTCTCAAATGACACACCC 58.754 41.667 0.00 0.00 0.00 4.61
653 656 4.698201 TTACTCTCAAATGACACACCCA 57.302 40.909 0.00 0.00 0.00 4.51
654 657 2.851195 ACTCTCAAATGACACACCCAC 58.149 47.619 0.00 0.00 0.00 4.61
655 658 1.800586 CTCTCAAATGACACACCCACG 59.199 52.381 0.00 0.00 0.00 4.94
656 659 1.140052 TCTCAAATGACACACCCACGT 59.860 47.619 0.00 0.00 0.00 4.49
657 660 1.264020 CTCAAATGACACACCCACGTG 59.736 52.381 9.08 9.08 46.11 4.49
693 696 2.451167 CGAGCGAGGCAGCAAAGAG 61.451 63.158 7.67 0.00 40.15 2.85
705 708 3.587923 CAGCAAAGAGAGAGGAAGACAG 58.412 50.000 0.00 0.00 0.00 3.51
706 709 2.028203 AGCAAAGAGAGAGGAAGACAGC 60.028 50.000 0.00 0.00 0.00 4.40
774 777 1.901833 GGCCCACAGGAAATGATTTGT 59.098 47.619 0.00 0.00 33.47 2.83
781 784 5.106396 CCACAGGAAATGATTTGTCTGAGAC 60.106 44.000 18.51 5.47 0.00 3.36
783 786 5.222007 ACAGGAAATGATTTGTCTGAGACCT 60.222 40.000 18.51 5.20 0.00 3.85
784 787 5.123502 CAGGAAATGATTTGTCTGAGACCTG 59.876 44.000 10.52 2.19 35.02 4.00
785 788 4.397417 GGAAATGATTTGTCTGAGACCTGG 59.603 45.833 10.52 0.00 0.00 4.45
786 789 3.641434 ATGATTTGTCTGAGACCTGGG 57.359 47.619 10.52 0.00 0.00 4.45
787 790 2.619931 TGATTTGTCTGAGACCTGGGA 58.380 47.619 10.52 0.00 0.00 4.37
788 791 2.568956 TGATTTGTCTGAGACCTGGGAG 59.431 50.000 10.52 0.00 0.00 4.30
789 792 2.398754 TTTGTCTGAGACCTGGGAGA 57.601 50.000 10.52 0.00 0.00 3.71
790 793 1.930251 TTGTCTGAGACCTGGGAGAG 58.070 55.000 10.52 0.00 0.00 3.20
791 794 1.076438 TGTCTGAGACCTGGGAGAGA 58.924 55.000 10.52 0.00 0.00 3.10
792 795 1.005332 TGTCTGAGACCTGGGAGAGAG 59.995 57.143 10.52 0.00 0.00 3.20
793 796 1.283613 GTCTGAGACCTGGGAGAGAGA 59.716 57.143 0.00 0.00 0.00 3.10
828 832 1.688772 CAGCATCCAATTCTGGGGAG 58.311 55.000 0.00 0.00 43.71 4.30
829 833 1.064166 CAGCATCCAATTCTGGGGAGT 60.064 52.381 0.00 0.00 43.71 3.85
830 834 1.064166 AGCATCCAATTCTGGGGAGTG 60.064 52.381 0.00 0.00 43.71 3.51
831 835 1.396653 CATCCAATTCTGGGGAGTGC 58.603 55.000 0.00 0.00 43.71 4.40
832 836 1.002069 ATCCAATTCTGGGGAGTGCA 58.998 50.000 0.00 0.00 43.71 4.57
906 914 3.980646 ACGCATGCAAGTTTAAGACAA 57.019 38.095 19.57 0.00 0.00 3.18
907 915 3.888934 ACGCATGCAAGTTTAAGACAAG 58.111 40.909 19.57 0.00 0.00 3.16
908 916 2.658325 CGCATGCAAGTTTAAGACAAGC 59.342 45.455 19.57 0.00 0.00 4.01
909 917 2.658325 GCATGCAAGTTTAAGACAAGCG 59.342 45.455 14.21 0.00 34.30 4.68
910 918 2.399396 TGCAAGTTTAAGACAAGCGC 57.601 45.000 0.00 0.00 34.30 5.92
911 919 1.318251 GCAAGTTTAAGACAAGCGCG 58.682 50.000 0.00 0.00 0.00 6.86
912 920 1.318251 CAAGTTTAAGACAAGCGCGC 58.682 50.000 26.66 26.66 0.00 6.86
953 961 4.602259 CATACGGCCGGCCACGAT 62.602 66.667 42.78 28.91 44.60 3.73
981 989 3.175724 CGCAGCAAGCAAGGAGAG 58.824 61.111 0.00 0.00 46.13 3.20
982 990 2.396955 CGCAGCAAGCAAGGAGAGG 61.397 63.158 0.00 0.00 46.13 3.69
984 992 1.025647 GCAGCAAGCAAGGAGAGGAG 61.026 60.000 0.00 0.00 44.79 3.69
986 994 1.209990 CAGCAAGCAAGGAGAGGAGAT 59.790 52.381 0.00 0.00 0.00 2.75
994 1016 3.367292 GCAAGGAGAGGAGATCGATCATC 60.367 52.174 26.47 19.54 0.00 2.92
999 1021 4.381825 GGAGAGGAGATCGATCATCCATTG 60.382 50.000 29.55 0.00 35.45 2.82
1086 1108 3.630148 CACATCGACATCGCGGCC 61.630 66.667 6.13 0.00 39.60 6.13
1158 1180 3.580895 ACAAGTCTTCTTCTTCCTCCTCC 59.419 47.826 0.00 0.00 0.00 4.30
1159 1181 2.452505 AGTCTTCTTCTTCCTCCTCCG 58.547 52.381 0.00 0.00 0.00 4.63
1160 1182 2.172679 GTCTTCTTCTTCCTCCTCCGT 58.827 52.381 0.00 0.00 0.00 4.69
1204 1226 3.136123 CGACCTACCTTCCGCCGA 61.136 66.667 0.00 0.00 0.00 5.54
1205 1227 2.703798 CGACCTACCTTCCGCCGAA 61.704 63.158 0.00 0.00 0.00 4.30
1207 1229 2.202892 CCTACCTTCCGCCGAAGC 60.203 66.667 9.06 0.00 43.66 3.86
1219 1262 0.742635 GCCGAAGCAGAAGGAGAAGG 60.743 60.000 0.00 0.00 39.53 3.46
1224 1267 1.655372 AGCAGAAGGAGAAGGCTTCT 58.345 50.000 28.94 28.94 44.21 2.85
1241 1284 1.743252 CTCCTTCTTGGCCAGACGC 60.743 63.158 5.11 0.00 35.26 5.19
1293 1336 3.569200 GAAGGGGCTGCGGTCCTTT 62.569 63.158 14.26 14.26 40.61 3.11
1470 1513 1.003839 GATGCACTCGGTGGGTTCA 60.004 57.895 0.00 0.00 33.64 3.18
1632 1675 3.718210 GATCGTCTGGCGGACCACC 62.718 68.421 20.34 5.95 42.67 4.61
1747 1790 7.429636 GTGCCGCTCACCTAATTATAATTAA 57.570 36.000 16.69 3.93 39.79 1.40
1750 1793 9.727859 TGCCGCTCACCTAATTATAATTAATTA 57.272 29.630 16.69 10.27 38.61 1.40
1775 1827 2.315720 AGAAGCCCATTTGCCTCTTT 57.684 45.000 0.00 0.00 27.48 2.52
1900 1966 8.943909 ACTTAATTTACTCGATTTGGGACTAG 57.056 34.615 0.00 0.00 0.00 2.57
1925 1991 2.698855 TTTGATCTGCCAGGCTCTAC 57.301 50.000 14.15 2.73 0.00 2.59
1927 1993 0.826715 TGATCTGCCAGGCTCTACAC 59.173 55.000 14.15 0.16 0.00 2.90
1972 2039 6.347402 GCGACACTCAATTTTAGCTTTCAGTA 60.347 38.462 0.00 0.00 0.00 2.74
1973 2040 7.010023 CGACACTCAATTTTAGCTTTCAGTAC 58.990 38.462 0.00 0.00 0.00 2.73
1975 2042 8.089115 ACACTCAATTTTAGCTTTCAGTACTC 57.911 34.615 0.00 0.00 0.00 2.59
1977 2044 9.424319 CACTCAATTTTAGCTTTCAGTACTCTA 57.576 33.333 0.00 0.00 0.00 2.43
1978 2045 9.425577 ACTCAATTTTAGCTTTCAGTACTCTAC 57.574 33.333 0.00 0.00 0.00 2.59
1979 2046 8.462143 TCAATTTTAGCTTTCAGTACTCTACG 57.538 34.615 0.00 0.00 0.00 3.51
1980 2047 6.889019 ATTTTAGCTTTCAGTACTCTACGC 57.111 37.500 0.00 0.00 0.00 4.42
1981 2048 5.381174 TTTAGCTTTCAGTACTCTACGCA 57.619 39.130 0.00 0.00 0.00 5.24
1999 2078 5.933187 ACGCATACTTTTTACATCACACA 57.067 34.783 0.00 0.00 0.00 3.72
2002 2081 7.021196 ACGCATACTTTTTACATCACACAATC 58.979 34.615 0.00 0.00 0.00 2.67
2058 2137 8.458052 TCAACAATATACGAAAATGATGCACTT 58.542 29.630 0.00 0.00 0.00 3.16
2059 2138 8.736742 CAACAATATACGAAAATGATGCACTTC 58.263 33.333 0.00 0.00 0.00 3.01
2060 2139 7.984391 ACAATATACGAAAATGATGCACTTCA 58.016 30.769 0.00 0.00 0.00 3.02
2061 2140 8.458052 ACAATATACGAAAATGATGCACTTCAA 58.542 29.630 0.00 0.00 0.00 2.69
2081 2160 7.706607 ACTTCAATTCCTTGCTCAACTAAAAAC 59.293 33.333 0.00 0.00 32.11 2.43
2123 2202 4.801330 TGAGTTCCAGTACACACCATAG 57.199 45.455 0.00 0.00 0.00 2.23
2205 2289 2.119495 GGAGAGAGTGGGAATTGGCTA 58.881 52.381 0.00 0.00 0.00 3.93
2223 2307 3.495001 GGCTAGTTAATTTGCGGCTAGAG 59.505 47.826 0.00 0.00 33.05 2.43
2246 2330 4.517285 CACCAAGTACATGGATTGTAGCT 58.483 43.478 23.41 0.00 43.54 3.32
2287 2371 3.247173 GCATCGTCTTCATCACTTGATCC 59.753 47.826 0.00 0.00 33.34 3.36
2290 2374 6.453943 CATCGTCTTCATCACTTGATCCTAT 58.546 40.000 0.00 0.00 33.34 2.57
2291 2375 5.836347 TCGTCTTCATCACTTGATCCTATG 58.164 41.667 0.00 0.00 33.34 2.23
2292 2376 4.987285 CGTCTTCATCACTTGATCCTATGG 59.013 45.833 0.00 0.00 33.34 2.74
2293 2377 4.754114 GTCTTCATCACTTGATCCTATGGC 59.246 45.833 0.00 0.00 33.34 4.40
2294 2378 3.391506 TCATCACTTGATCCTATGGCG 57.608 47.619 0.00 0.00 31.21 5.69
2295 2379 2.700371 TCATCACTTGATCCTATGGCGT 59.300 45.455 0.00 0.00 31.21 5.68
2296 2380 2.602257 TCACTTGATCCTATGGCGTG 57.398 50.000 0.00 0.00 0.00 5.34
2297 2381 2.107366 TCACTTGATCCTATGGCGTGA 58.893 47.619 0.00 0.00 0.00 4.35
2298 2382 2.159099 TCACTTGATCCTATGGCGTGAC 60.159 50.000 0.00 0.00 0.00 3.67
2299 2383 1.831106 ACTTGATCCTATGGCGTGACA 59.169 47.619 0.00 0.00 0.00 3.58
2300 2384 2.435805 ACTTGATCCTATGGCGTGACAT 59.564 45.455 0.00 0.00 34.90 3.06
2301 2385 2.531522 TGATCCTATGGCGTGACATG 57.468 50.000 0.00 0.00 32.39 3.21
2302 2386 2.038659 TGATCCTATGGCGTGACATGA 58.961 47.619 0.00 0.00 32.39 3.07
2303 2387 2.433970 TGATCCTATGGCGTGACATGAA 59.566 45.455 0.00 0.00 32.39 2.57
2304 2388 3.118445 TGATCCTATGGCGTGACATGAAA 60.118 43.478 0.00 0.00 32.39 2.69
2305 2389 2.627945 TCCTATGGCGTGACATGAAAC 58.372 47.619 0.00 0.00 32.39 2.78
2306 2390 2.236146 TCCTATGGCGTGACATGAAACT 59.764 45.455 0.00 0.00 32.39 2.66
2307 2391 2.352651 CCTATGGCGTGACATGAAACTG 59.647 50.000 0.00 0.00 32.39 3.16
2308 2392 1.896220 ATGGCGTGACATGAAACTGT 58.104 45.000 0.00 0.00 0.00 3.55
2309 2393 2.535012 TGGCGTGACATGAAACTGTA 57.465 45.000 0.00 0.00 0.00 2.74
2310 2394 2.839975 TGGCGTGACATGAAACTGTAA 58.160 42.857 0.00 0.00 0.00 2.41
2311 2395 2.805671 TGGCGTGACATGAAACTGTAAG 59.194 45.455 0.00 0.00 42.29 2.34
2312 2396 2.159627 GGCGTGACATGAAACTGTAAGG 59.840 50.000 0.00 0.00 39.30 2.69
2313 2397 2.159627 GCGTGACATGAAACTGTAAGGG 59.840 50.000 0.00 0.00 39.30 3.95
2314 2398 2.159627 CGTGACATGAAACTGTAAGGGC 59.840 50.000 0.00 0.00 39.30 5.19
2315 2399 2.159627 GTGACATGAAACTGTAAGGGCG 59.840 50.000 0.00 0.00 39.30 6.13
2316 2400 2.037902 TGACATGAAACTGTAAGGGCGA 59.962 45.455 0.00 0.00 39.30 5.54
2317 2401 2.673368 GACATGAAACTGTAAGGGCGAG 59.327 50.000 0.00 0.00 39.30 5.03
2318 2402 2.009774 CATGAAACTGTAAGGGCGAGG 58.990 52.381 0.00 0.00 39.30 4.63
2319 2403 1.053424 TGAAACTGTAAGGGCGAGGT 58.947 50.000 0.00 0.00 39.30 3.85
2320 2404 1.270625 TGAAACTGTAAGGGCGAGGTG 60.271 52.381 0.00 0.00 39.30 4.00
2321 2405 0.763035 AAACTGTAAGGGCGAGGTGT 59.237 50.000 0.00 0.00 39.30 4.16
2322 2406 0.034896 AACTGTAAGGGCGAGGTGTG 59.965 55.000 0.00 0.00 39.30 3.82
2323 2407 1.741770 CTGTAAGGGCGAGGTGTGC 60.742 63.158 0.00 0.00 0.00 4.57
2324 2408 2.172483 CTGTAAGGGCGAGGTGTGCT 62.172 60.000 0.00 0.00 0.00 4.40
2325 2409 1.448013 GTAAGGGCGAGGTGTGCTC 60.448 63.158 0.00 0.00 0.00 4.26
2326 2410 1.911269 TAAGGGCGAGGTGTGCTCA 60.911 57.895 0.00 0.00 34.43 4.26
2327 2411 2.167398 TAAGGGCGAGGTGTGCTCAC 62.167 60.000 10.44 10.44 43.19 3.51
2331 2415 3.680786 CGAGGTGTGCTCACGGGA 61.681 66.667 12.43 0.00 44.68 5.14
2332 2416 2.048127 GAGGTGTGCTCACGGGAC 60.048 66.667 12.43 0.00 44.68 4.46
2333 2417 3.591254 GAGGTGTGCTCACGGGACC 62.591 68.421 12.43 0.00 44.68 4.46
2334 2418 3.626924 GGTGTGCTCACGGGACCT 61.627 66.667 12.43 0.00 44.68 3.85
2335 2419 2.426023 GTGTGCTCACGGGACCTT 59.574 61.111 2.72 0.00 35.29 3.50
2336 2420 1.668151 GTGTGCTCACGGGACCTTC 60.668 63.158 2.72 0.00 35.29 3.46
2337 2421 1.837051 TGTGCTCACGGGACCTTCT 60.837 57.895 0.00 0.00 35.29 2.85
2338 2422 0.541063 TGTGCTCACGGGACCTTCTA 60.541 55.000 0.00 0.00 35.29 2.10
2339 2423 0.824759 GTGCTCACGGGACCTTCTAT 59.175 55.000 0.00 0.00 0.00 1.98
2340 2424 1.207329 GTGCTCACGGGACCTTCTATT 59.793 52.381 0.00 0.00 0.00 1.73
2341 2425 1.906574 TGCTCACGGGACCTTCTATTT 59.093 47.619 0.00 0.00 0.00 1.40
2342 2426 2.280628 GCTCACGGGACCTTCTATTTG 58.719 52.381 0.00 0.00 0.00 2.32
2343 2427 2.093658 GCTCACGGGACCTTCTATTTGA 60.094 50.000 0.00 0.00 0.00 2.69
2344 2428 3.522553 CTCACGGGACCTTCTATTTGAC 58.477 50.000 0.00 0.00 0.00 3.18
2345 2429 2.094390 TCACGGGACCTTCTATTTGACG 60.094 50.000 0.00 0.00 0.00 4.35
2346 2430 1.287425 CGGGACCTTCTATTTGACGC 58.713 55.000 0.00 0.00 0.00 5.19
2347 2431 1.134788 CGGGACCTTCTATTTGACGCT 60.135 52.381 0.00 0.00 0.00 5.07
2348 2432 2.552031 GGGACCTTCTATTTGACGCTC 58.448 52.381 0.00 0.00 0.00 5.03
2349 2433 2.168728 GGGACCTTCTATTTGACGCTCT 59.831 50.000 0.00 0.00 0.00 4.09
2350 2434 3.383825 GGGACCTTCTATTTGACGCTCTA 59.616 47.826 0.00 0.00 0.00 2.43
2351 2435 4.039366 GGGACCTTCTATTTGACGCTCTAT 59.961 45.833 0.00 0.00 0.00 1.98
2352 2436 5.453480 GGGACCTTCTATTTGACGCTCTATT 60.453 44.000 0.00 0.00 0.00 1.73
2353 2437 5.692654 GGACCTTCTATTTGACGCTCTATTC 59.307 44.000 0.00 0.00 0.00 1.75
2354 2438 5.282510 ACCTTCTATTTGACGCTCTATTCG 58.717 41.667 0.00 0.00 0.00 3.34
2355 2439 5.163540 ACCTTCTATTTGACGCTCTATTCGT 60.164 40.000 0.00 0.00 43.49 3.85
2365 2449 4.307432 ACGCTCTATTCGTCAAATATGGG 58.693 43.478 0.00 0.00 34.84 4.00
2366 2450 3.123621 CGCTCTATTCGTCAAATATGGGC 59.876 47.826 0.00 0.00 0.00 5.36
2367 2451 3.123621 GCTCTATTCGTCAAATATGGGCG 59.876 47.826 0.00 0.00 0.00 6.13
2368 2452 4.307432 CTCTATTCGTCAAATATGGGCGT 58.693 43.478 2.17 0.00 0.00 5.68
2369 2453 4.055360 TCTATTCGTCAAATATGGGCGTG 58.945 43.478 2.17 0.00 0.00 5.34
2370 2454 2.388310 TTCGTCAAATATGGGCGTGA 57.612 45.000 2.17 0.00 0.00 4.35
2371 2455 2.613026 TCGTCAAATATGGGCGTGAT 57.387 45.000 2.17 0.00 0.00 3.06
2372 2456 2.209273 TCGTCAAATATGGGCGTGATG 58.791 47.619 2.17 0.00 0.00 3.07
2373 2457 1.334059 CGTCAAATATGGGCGTGATGC 60.334 52.381 0.00 0.00 45.38 3.91
2393 2477 3.109044 CATAGAGTGCATCCTGACTGG 57.891 52.381 0.00 0.00 37.10 4.00
2394 2478 1.489481 TAGAGTGCATCCTGACTGGG 58.511 55.000 0.00 0.00 36.20 4.45
2395 2479 1.451028 GAGTGCATCCTGACTGGGC 60.451 63.158 0.00 0.00 36.20 5.36
2396 2480 2.439156 GTGCATCCTGACTGGGCC 60.439 66.667 0.00 0.00 36.20 5.80
2397 2481 4.100084 TGCATCCTGACTGGGCCG 62.100 66.667 0.00 0.00 36.20 6.13
2398 2482 3.785859 GCATCCTGACTGGGCCGA 61.786 66.667 0.00 0.00 36.20 5.54
2399 2483 2.187946 CATCCTGACTGGGCCGAC 59.812 66.667 0.00 0.00 36.20 4.79
2400 2484 3.083997 ATCCTGACTGGGCCGACC 61.084 66.667 0.00 0.00 40.81 4.79
2412 2496 2.676121 CCGACCCATTGCCTGCAA 60.676 61.111 7.06 7.06 40.47 4.08
2413 2497 2.568090 CGACCCATTGCCTGCAAC 59.432 61.111 6.72 0.00 38.88 4.17
2414 2498 2.267351 CGACCCATTGCCTGCAACA 61.267 57.895 6.72 0.00 38.88 3.33
2415 2499 1.597797 CGACCCATTGCCTGCAACAT 61.598 55.000 6.72 0.00 38.88 2.71
2416 2500 0.609662 GACCCATTGCCTGCAACATT 59.390 50.000 6.72 0.00 38.88 2.71
2417 2501 0.322322 ACCCATTGCCTGCAACATTG 59.678 50.000 6.72 1.97 38.88 2.82
2418 2502 0.322322 CCCATTGCCTGCAACATTGT 59.678 50.000 6.72 0.00 38.88 2.71
2419 2503 1.673626 CCCATTGCCTGCAACATTGTC 60.674 52.381 6.72 0.00 38.88 3.18
2420 2504 1.342555 CATTGCCTGCAACATTGTCG 58.657 50.000 6.72 0.00 38.88 4.35
2421 2505 0.388907 ATTGCCTGCAACATTGTCGC 60.389 50.000 6.72 0.00 38.88 5.19
2422 2506 2.502510 GCCTGCAACATTGTCGCG 60.503 61.111 0.00 0.00 0.00 5.87
2423 2507 2.965147 GCCTGCAACATTGTCGCGA 61.965 57.895 3.71 3.71 0.00 5.87
2424 2508 1.796151 CCTGCAACATTGTCGCGAT 59.204 52.632 14.06 0.00 0.00 4.58
2425 2509 0.521867 CCTGCAACATTGTCGCGATG 60.522 55.000 14.06 9.74 0.00 3.84
2426 2510 0.166597 CTGCAACATTGTCGCGATGT 59.833 50.000 14.06 10.53 39.87 3.06
2427 2511 0.110283 TGCAACATTGTCGCGATGTG 60.110 50.000 14.06 14.17 38.36 3.21
2428 2512 1.398022 GCAACATTGTCGCGATGTGC 61.398 55.000 14.06 14.69 38.36 4.57
2438 2522 2.577644 CGATGTGCGCATTGTGCC 60.578 61.111 15.91 10.95 41.12 5.01
2439 2523 2.567569 GATGTGCGCATTGTGCCA 59.432 55.556 15.91 15.73 41.12 4.92
2440 2524 1.080637 GATGTGCGCATTGTGCCAA 60.081 52.632 15.91 7.93 41.12 4.52
2441 2525 0.666880 GATGTGCGCATTGTGCCAAA 60.667 50.000 15.91 5.50 41.12 3.28
2442 2526 0.249784 ATGTGCGCATTGTGCCAAAA 60.250 45.000 15.91 3.10 41.12 2.44
2443 2527 0.875040 TGTGCGCATTGTGCCAAAAG 60.875 50.000 15.91 0.00 41.12 2.27
2444 2528 0.875474 GTGCGCATTGTGCCAAAAGT 60.875 50.000 15.91 0.00 41.12 2.66
2445 2529 0.179089 TGCGCATTGTGCCAAAAGTT 60.179 45.000 18.87 0.00 41.12 2.66
2446 2530 0.936600 GCGCATTGTGCCAAAAGTTT 59.063 45.000 11.14 0.00 41.12 2.66
2447 2531 1.330213 GCGCATTGTGCCAAAAGTTTT 59.670 42.857 11.14 0.00 41.12 2.43
2448 2532 2.223226 GCGCATTGTGCCAAAAGTTTTT 60.223 40.909 11.14 0.00 41.12 1.94
2555 2639 7.885297 AGCTAACTATTTGAAAATGCTTGTCA 58.115 30.769 0.00 0.00 0.00 3.58
2556 2640 8.359642 AGCTAACTATTTGAAAATGCTTGTCAA 58.640 29.630 0.00 0.00 0.00 3.18
2557 2641 8.977505 GCTAACTATTTGAAAATGCTTGTCAAA 58.022 29.630 13.26 13.26 43.36 2.69
2594 2678 8.756864 TGTCTGCGAAAATTTTAAATAAACACC 58.243 29.630 2.75 0.00 0.00 4.16
2595 2679 7.942538 GTCTGCGAAAATTTTAAATAAACACCG 59.057 33.333 2.75 0.48 0.00 4.94
2596 2680 7.861372 TCTGCGAAAATTTTAAATAAACACCGA 59.139 29.630 2.75 0.00 0.00 4.69
2597 2681 8.522178 TGCGAAAATTTTAAATAAACACCGAT 57.478 26.923 2.75 0.00 0.00 4.18
2598 2682 9.622004 TGCGAAAATTTTAAATAAACACCGATA 57.378 25.926 2.75 0.00 0.00 2.92
2720 2804 6.487689 AAAAACGAATTTCCAAAACTGCAA 57.512 29.167 0.00 0.00 0.00 4.08
2721 2805 6.487689 AAAACGAATTTCCAAAACTGCAAA 57.512 29.167 0.00 0.00 0.00 3.68
2722 2806 6.676237 AAACGAATTTCCAAAACTGCAAAT 57.324 29.167 0.00 0.00 0.00 2.32
2723 2807 6.676237 AACGAATTTCCAAAACTGCAAATT 57.324 29.167 0.00 0.00 32.38 1.82
2724 2808 6.285790 ACGAATTTCCAAAACTGCAAATTC 57.714 33.333 4.77 4.77 39.95 2.17
2725 2809 5.814705 ACGAATTTCCAAAACTGCAAATTCA 59.185 32.000 12.38 0.00 41.96 2.57
2726 2810 6.018832 ACGAATTTCCAAAACTGCAAATTCAG 60.019 34.615 12.38 8.62 41.96 3.02
2727 2811 6.200665 CGAATTTCCAAAACTGCAAATTCAGA 59.799 34.615 12.38 0.24 41.96 3.27
2728 2812 6.849588 ATTTCCAAAACTGCAAATTCAGAC 57.150 33.333 1.40 0.00 37.51 3.51
2729 2813 4.998671 TCCAAAACTGCAAATTCAGACA 57.001 36.364 1.40 0.00 37.51 3.41
2730 2814 4.935702 TCCAAAACTGCAAATTCAGACAG 58.064 39.130 1.40 0.00 37.51 3.51
2731 2815 4.402155 TCCAAAACTGCAAATTCAGACAGT 59.598 37.500 1.40 0.00 44.96 3.55
2732 2816 4.741676 CCAAAACTGCAAATTCAGACAGTC 59.258 41.667 1.40 0.00 42.34 3.51
2733 2817 4.574599 AAACTGCAAATTCAGACAGTCC 57.425 40.909 0.00 0.00 42.34 3.85
2734 2818 2.508526 ACTGCAAATTCAGACAGTCCC 58.491 47.619 0.00 0.00 39.04 4.46
2735 2819 2.158623 ACTGCAAATTCAGACAGTCCCA 60.159 45.455 0.00 0.00 39.04 4.37
2736 2820 2.886523 CTGCAAATTCAGACAGTCCCAA 59.113 45.455 0.00 0.00 36.19 4.12
2737 2821 3.295093 TGCAAATTCAGACAGTCCCAAA 58.705 40.909 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.280628 GGGATCTAACGACCAAGCTTG 58.719 52.381 19.93 19.93 0.00 4.01
13 14 1.906574 TGGGATCTAACGACCAAGCTT 59.093 47.619 0.00 0.00 0.00 3.74
14 15 1.568504 TGGGATCTAACGACCAAGCT 58.431 50.000 0.00 0.00 0.00 3.74
15 16 2.213499 CATGGGATCTAACGACCAAGC 58.787 52.381 0.00 0.00 36.44 4.01
16 17 3.198068 CACATGGGATCTAACGACCAAG 58.802 50.000 0.00 0.00 36.44 3.61
17 18 2.679639 GCACATGGGATCTAACGACCAA 60.680 50.000 0.00 0.00 36.44 3.67
18 19 1.134521 GCACATGGGATCTAACGACCA 60.135 52.381 0.00 0.00 37.41 4.02
19 20 1.139058 AGCACATGGGATCTAACGACC 59.861 52.381 0.00 0.00 0.00 4.79
20 21 2.101582 AGAGCACATGGGATCTAACGAC 59.898 50.000 15.53 0.00 0.00 4.34
21 22 2.388735 AGAGCACATGGGATCTAACGA 58.611 47.619 15.53 0.00 0.00 3.85
22 23 2.898729 AGAGCACATGGGATCTAACG 57.101 50.000 15.53 0.00 0.00 3.18
23 24 3.471680 GGAAGAGCACATGGGATCTAAC 58.528 50.000 17.60 13.37 0.00 2.34
24 25 2.439507 GGGAAGAGCACATGGGATCTAA 59.560 50.000 17.60 0.00 0.00 2.10
25 26 2.050144 GGGAAGAGCACATGGGATCTA 58.950 52.381 17.60 0.00 0.00 1.98
26 27 0.842635 GGGAAGAGCACATGGGATCT 59.157 55.000 10.66 10.66 0.00 2.75
27 28 0.842635 AGGGAAGAGCACATGGGATC 59.157 55.000 4.67 4.67 0.00 3.36
28 29 1.213926 GAAGGGAAGAGCACATGGGAT 59.786 52.381 0.00 0.00 0.00 3.85
29 30 0.620556 GAAGGGAAGAGCACATGGGA 59.379 55.000 0.00 0.00 0.00 4.37
30 31 0.745845 CGAAGGGAAGAGCACATGGG 60.746 60.000 0.00 0.00 0.00 4.00
31 32 0.250234 TCGAAGGGAAGAGCACATGG 59.750 55.000 0.00 0.00 0.00 3.66
32 33 2.099141 TTCGAAGGGAAGAGCACATG 57.901 50.000 0.00 0.00 0.00 3.21
33 34 2.859165 TTTCGAAGGGAAGAGCACAT 57.141 45.000 0.00 0.00 35.70 3.21
34 35 2.616842 GTTTTTCGAAGGGAAGAGCACA 59.383 45.455 0.00 0.00 35.70 4.57
35 36 2.879026 AGTTTTTCGAAGGGAAGAGCAC 59.121 45.455 0.00 0.00 35.70 4.40
36 37 3.208747 AGTTTTTCGAAGGGAAGAGCA 57.791 42.857 0.00 0.00 35.70 4.26
37 38 3.564225 TGAAGTTTTTCGAAGGGAAGAGC 59.436 43.478 0.00 0.00 35.70 4.09
38 39 5.948992 ATGAAGTTTTTCGAAGGGAAGAG 57.051 39.130 0.00 0.00 35.70 2.85
39 40 7.811117 TTAATGAAGTTTTTCGAAGGGAAGA 57.189 32.000 0.00 0.00 35.70 2.87
40 41 8.865590 TTTTAATGAAGTTTTTCGAAGGGAAG 57.134 30.769 0.00 0.00 35.70 3.46
41 42 9.471084 GATTTTAATGAAGTTTTTCGAAGGGAA 57.529 29.630 0.00 0.00 36.04 3.97
42 43 8.634444 TGATTTTAATGAAGTTTTTCGAAGGGA 58.366 29.630 0.00 0.00 36.04 4.20
43 44 8.699749 GTGATTTTAATGAAGTTTTTCGAAGGG 58.300 33.333 0.00 0.00 36.04 3.95
44 45 8.699749 GGTGATTTTAATGAAGTTTTTCGAAGG 58.300 33.333 0.00 0.00 36.04 3.46
45 46 9.243637 TGGTGATTTTAATGAAGTTTTTCGAAG 57.756 29.630 0.00 0.00 36.04 3.79
46 47 9.757227 ATGGTGATTTTAATGAAGTTTTTCGAA 57.243 25.926 0.00 0.00 36.04 3.71
47 48 9.757227 AATGGTGATTTTAATGAAGTTTTTCGA 57.243 25.926 0.00 0.00 36.04 3.71
48 49 9.796062 CAATGGTGATTTTAATGAAGTTTTTCG 57.204 29.630 0.00 0.00 36.04 3.46
49 50 9.597999 GCAATGGTGATTTTAATGAAGTTTTTC 57.402 29.630 0.00 0.00 0.00 2.29
50 51 9.118300 TGCAATGGTGATTTTAATGAAGTTTTT 57.882 25.926 0.00 0.00 0.00 1.94
51 52 8.558700 GTGCAATGGTGATTTTAATGAAGTTTT 58.441 29.630 0.00 0.00 0.00 2.43
52 53 7.714377 TGTGCAATGGTGATTTTAATGAAGTTT 59.286 29.630 0.00 0.00 0.00 2.66
53 54 7.215789 TGTGCAATGGTGATTTTAATGAAGTT 58.784 30.769 0.00 0.00 0.00 2.66
54 55 6.757237 TGTGCAATGGTGATTTTAATGAAGT 58.243 32.000 0.00 0.00 0.00 3.01
55 56 7.837202 ATGTGCAATGGTGATTTTAATGAAG 57.163 32.000 0.00 0.00 0.00 3.02
56 57 8.618702 AAATGTGCAATGGTGATTTTAATGAA 57.381 26.923 0.00 0.00 0.00 2.57
57 58 9.149225 GTAAATGTGCAATGGTGATTTTAATGA 57.851 29.630 0.00 0.00 0.00 2.57
58 59 8.933807 TGTAAATGTGCAATGGTGATTTTAATG 58.066 29.630 0.00 0.00 0.00 1.90
59 60 9.669887 ATGTAAATGTGCAATGGTGATTTTAAT 57.330 25.926 0.00 0.00 0.00 1.40
60 61 8.933807 CATGTAAATGTGCAATGGTGATTTTAA 58.066 29.630 0.00 0.00 0.00 1.52
61 62 8.309656 TCATGTAAATGTGCAATGGTGATTTTA 58.690 29.630 0.00 0.00 0.00 1.52
62 63 7.160049 TCATGTAAATGTGCAATGGTGATTTT 58.840 30.769 0.00 0.00 0.00 1.82
63 64 6.699366 TCATGTAAATGTGCAATGGTGATTT 58.301 32.000 0.00 0.00 0.00 2.17
64 65 6.283544 TCATGTAAATGTGCAATGGTGATT 57.716 33.333 0.00 0.00 0.00 2.57
65 66 5.918426 TCATGTAAATGTGCAATGGTGAT 57.082 34.783 0.00 0.00 0.00 3.06
66 67 5.448904 CGATCATGTAAATGTGCAATGGTGA 60.449 40.000 0.00 0.00 0.00 4.02
67 68 4.736307 CGATCATGTAAATGTGCAATGGTG 59.264 41.667 0.00 0.00 0.00 4.17
68 69 4.398988 ACGATCATGTAAATGTGCAATGGT 59.601 37.500 0.00 0.00 0.00 3.55
69 70 4.923893 ACGATCATGTAAATGTGCAATGG 58.076 39.130 0.00 0.00 0.00 3.16
70 71 5.813717 AGACGATCATGTAAATGTGCAATG 58.186 37.500 0.00 0.00 0.00 2.82
71 72 6.317140 AGAAGACGATCATGTAAATGTGCAAT 59.683 34.615 0.00 0.00 0.00 3.56
72 73 5.643348 AGAAGACGATCATGTAAATGTGCAA 59.357 36.000 0.00 0.00 0.00 4.08
73 74 5.178061 AGAAGACGATCATGTAAATGTGCA 58.822 37.500 0.00 0.00 0.00 4.57
74 75 5.725110 AGAAGACGATCATGTAAATGTGC 57.275 39.130 0.00 0.00 0.00 4.57
75 76 7.531280 AGAAGAAGACGATCATGTAAATGTG 57.469 36.000 0.00 0.00 0.00 3.21
76 77 8.037758 AGAAGAAGAAGACGATCATGTAAATGT 58.962 33.333 0.00 0.00 0.00 2.71
77 78 8.417780 AGAAGAAGAAGACGATCATGTAAATG 57.582 34.615 0.00 0.00 0.00 2.32
78 79 9.092876 GAAGAAGAAGAAGACGATCATGTAAAT 57.907 33.333 0.00 0.00 0.00 1.40
79 80 8.307483 AGAAGAAGAAGAAGACGATCATGTAAA 58.693 33.333 0.00 0.00 0.00 2.01
80 81 7.831753 AGAAGAAGAAGAAGACGATCATGTAA 58.168 34.615 0.00 0.00 0.00 2.41
81 82 7.397892 AGAAGAAGAAGAAGACGATCATGTA 57.602 36.000 0.00 0.00 0.00 2.29
82 83 6.279513 AGAAGAAGAAGAAGACGATCATGT 57.720 37.500 0.00 0.00 0.00 3.21
83 84 6.810676 TCAAGAAGAAGAAGAAGACGATCATG 59.189 38.462 0.00 0.00 0.00 3.07
84 85 6.929625 TCAAGAAGAAGAAGAAGACGATCAT 58.070 36.000 0.00 0.00 0.00 2.45
85 86 6.332735 TCAAGAAGAAGAAGAAGACGATCA 57.667 37.500 0.00 0.00 0.00 2.92
86 87 7.032580 TGATCAAGAAGAAGAAGAAGACGATC 58.967 38.462 0.00 0.00 0.00 3.69
87 88 6.929625 TGATCAAGAAGAAGAAGAAGACGAT 58.070 36.000 0.00 0.00 0.00 3.73
88 89 6.332735 TGATCAAGAAGAAGAAGAAGACGA 57.667 37.500 0.00 0.00 0.00 4.20
89 90 6.422100 TGTTGATCAAGAAGAAGAAGAAGACG 59.578 38.462 8.80 0.00 0.00 4.18
90 91 7.721286 TGTTGATCAAGAAGAAGAAGAAGAC 57.279 36.000 8.80 0.00 0.00 3.01
91 92 7.227512 GGTTGTTGATCAAGAAGAAGAAGAAGA 59.772 37.037 17.60 0.00 36.66 2.87
92 93 7.012704 TGGTTGTTGATCAAGAAGAAGAAGAAG 59.987 37.037 17.60 0.00 36.66 2.85
93 94 6.828273 TGGTTGTTGATCAAGAAGAAGAAGAA 59.172 34.615 17.60 0.00 36.66 2.52
94 95 6.356556 TGGTTGTTGATCAAGAAGAAGAAGA 58.643 36.000 17.60 0.00 36.66 2.87
95 96 6.624352 TGGTTGTTGATCAAGAAGAAGAAG 57.376 37.500 17.60 0.00 36.66 2.85
96 97 7.122650 AGTTTGGTTGTTGATCAAGAAGAAGAA 59.877 33.333 17.60 8.31 36.66 2.52
97 98 6.603201 AGTTTGGTTGTTGATCAAGAAGAAGA 59.397 34.615 17.60 2.89 36.66 2.87
98 99 6.799512 AGTTTGGTTGTTGATCAAGAAGAAG 58.200 36.000 17.60 0.00 36.66 2.85
99 100 6.603201 AGAGTTTGGTTGTTGATCAAGAAGAA 59.397 34.615 17.60 10.98 36.66 2.52
100 101 6.122277 AGAGTTTGGTTGTTGATCAAGAAGA 58.878 36.000 17.60 5.69 36.66 2.87
101 102 6.382869 AGAGTTTGGTTGTTGATCAAGAAG 57.617 37.500 17.60 0.00 36.66 2.85
102 103 6.603201 AGAAGAGTTTGGTTGTTGATCAAGAA 59.397 34.615 13.63 13.63 36.66 2.52
103 104 6.122277 AGAAGAGTTTGGTTGTTGATCAAGA 58.878 36.000 8.80 4.42 36.66 3.02
104 105 6.382869 AGAAGAGTTTGGTTGTTGATCAAG 57.617 37.500 8.80 0.00 36.66 3.02
105 106 6.183360 GGAAGAAGAGTTTGGTTGTTGATCAA 60.183 38.462 3.38 3.38 0.00 2.57
106 107 5.299279 GGAAGAAGAGTTTGGTTGTTGATCA 59.701 40.000 0.00 0.00 0.00 2.92
107 108 5.532779 AGGAAGAAGAGTTTGGTTGTTGATC 59.467 40.000 0.00 0.00 0.00 2.92
108 109 5.449553 AGGAAGAAGAGTTTGGTTGTTGAT 58.550 37.500 0.00 0.00 0.00 2.57
109 110 4.855340 AGGAAGAAGAGTTTGGTTGTTGA 58.145 39.130 0.00 0.00 0.00 3.18
110 111 4.260784 CGAGGAAGAAGAGTTTGGTTGTTG 60.261 45.833 0.00 0.00 0.00 3.33
111 112 3.877508 CGAGGAAGAAGAGTTTGGTTGTT 59.122 43.478 0.00 0.00 0.00 2.83
112 113 3.467803 CGAGGAAGAAGAGTTTGGTTGT 58.532 45.455 0.00 0.00 0.00 3.32
113 114 2.808543 CCGAGGAAGAAGAGTTTGGTTG 59.191 50.000 0.00 0.00 0.00 3.77
114 115 2.704065 TCCGAGGAAGAAGAGTTTGGTT 59.296 45.455 0.00 0.00 0.00 3.67
115 116 2.300437 CTCCGAGGAAGAAGAGTTTGGT 59.700 50.000 0.00 0.00 0.00 3.67
116 117 2.933056 GCTCCGAGGAAGAAGAGTTTGG 60.933 54.545 0.00 0.00 0.00 3.28
117 118 2.028567 AGCTCCGAGGAAGAAGAGTTTG 60.029 50.000 0.00 0.00 0.00 2.93
118 119 2.252714 AGCTCCGAGGAAGAAGAGTTT 58.747 47.619 0.00 0.00 0.00 2.66
119 120 1.931635 AGCTCCGAGGAAGAAGAGTT 58.068 50.000 0.00 0.00 0.00 3.01
120 121 1.822371 GAAGCTCCGAGGAAGAAGAGT 59.178 52.381 0.00 0.00 0.00 3.24
121 122 1.821753 TGAAGCTCCGAGGAAGAAGAG 59.178 52.381 0.00 0.00 0.00 2.85
122 123 1.924731 TGAAGCTCCGAGGAAGAAGA 58.075 50.000 0.00 0.00 0.00 2.87
123 124 2.167281 TCATGAAGCTCCGAGGAAGAAG 59.833 50.000 0.00 0.00 0.00 2.85
124 125 2.167281 CTCATGAAGCTCCGAGGAAGAA 59.833 50.000 0.00 0.00 0.00 2.52
125 126 1.753649 CTCATGAAGCTCCGAGGAAGA 59.246 52.381 0.00 0.00 0.00 2.87
126 127 2.222007 CTCATGAAGCTCCGAGGAAG 57.778 55.000 0.00 0.00 0.00 3.46
137 138 3.191078 AGAATCGGGAAGCTCATGAAG 57.809 47.619 0.00 0.00 0.00 3.02
138 139 3.535561 GAAGAATCGGGAAGCTCATGAA 58.464 45.455 0.00 0.00 0.00 2.57
139 140 2.158900 GGAAGAATCGGGAAGCTCATGA 60.159 50.000 0.00 0.00 0.00 3.07
140 141 2.216898 GGAAGAATCGGGAAGCTCATG 58.783 52.381 0.00 0.00 0.00 3.07
141 142 1.839994 TGGAAGAATCGGGAAGCTCAT 59.160 47.619 0.00 0.00 0.00 2.90
142 143 1.066143 GTGGAAGAATCGGGAAGCTCA 60.066 52.381 0.00 0.00 0.00 4.26
143 144 1.208293 AGTGGAAGAATCGGGAAGCTC 59.792 52.381 0.00 0.00 0.00 4.09
144 145 1.280457 AGTGGAAGAATCGGGAAGCT 58.720 50.000 0.00 0.00 0.00 3.74
145 146 2.010497 GAAGTGGAAGAATCGGGAAGC 58.990 52.381 0.00 0.00 0.00 3.86
146 147 3.526534 GAGAAGTGGAAGAATCGGGAAG 58.473 50.000 0.00 0.00 0.00 3.46
147 148 2.236395 GGAGAAGTGGAAGAATCGGGAA 59.764 50.000 0.00 0.00 0.00 3.97
148 149 1.831736 GGAGAAGTGGAAGAATCGGGA 59.168 52.381 0.00 0.00 0.00 5.14
149 150 1.834263 AGGAGAAGTGGAAGAATCGGG 59.166 52.381 0.00 0.00 0.00 5.14
150 151 2.497675 TGAGGAGAAGTGGAAGAATCGG 59.502 50.000 0.00 0.00 0.00 4.18
151 152 3.876274 TGAGGAGAAGTGGAAGAATCG 57.124 47.619 0.00 0.00 0.00 3.34
152 153 4.408596 AGGATGAGGAGAAGTGGAAGAATC 59.591 45.833 0.00 0.00 0.00 2.52
153 154 4.369872 AGGATGAGGAGAAGTGGAAGAAT 58.630 43.478 0.00 0.00 0.00 2.40
154 155 3.796111 AGGATGAGGAGAAGTGGAAGAA 58.204 45.455 0.00 0.00 0.00 2.52
155 156 3.481559 AGGATGAGGAGAAGTGGAAGA 57.518 47.619 0.00 0.00 0.00 2.87
156 157 3.517100 TCAAGGATGAGGAGAAGTGGAAG 59.483 47.826 0.00 0.00 0.00 3.46
157 158 3.520696 TCAAGGATGAGGAGAAGTGGAA 58.479 45.455 0.00 0.00 0.00 3.53
158 159 3.190383 TCAAGGATGAGGAGAAGTGGA 57.810 47.619 0.00 0.00 0.00 4.02
169 170 3.261643 TGCTACAAAGAGCTCAAGGATGA 59.738 43.478 17.77 0.00 43.27 2.92
170 171 3.603532 TGCTACAAAGAGCTCAAGGATG 58.396 45.455 17.77 9.32 43.27 3.51
171 172 3.988976 TGCTACAAAGAGCTCAAGGAT 57.011 42.857 17.77 0.00 43.27 3.24
172 173 3.769739 TTGCTACAAAGAGCTCAAGGA 57.230 42.857 17.77 3.46 43.27 3.36
173 174 4.005650 TCATTGCTACAAAGAGCTCAAGG 58.994 43.478 17.77 6.74 43.27 3.61
174 175 5.353400 TCATCATTGCTACAAAGAGCTCAAG 59.647 40.000 17.77 7.51 43.27 3.02
175 176 5.247862 TCATCATTGCTACAAAGAGCTCAA 58.752 37.500 17.77 0.00 43.27 3.02
176 177 4.835678 TCATCATTGCTACAAAGAGCTCA 58.164 39.130 17.77 0.00 43.27 4.26
177 178 5.808042 TTCATCATTGCTACAAAGAGCTC 57.192 39.130 5.27 5.27 43.27 4.09
178 179 6.579666 TTTTCATCATTGCTACAAAGAGCT 57.420 33.333 0.00 0.00 43.27 4.09
179 180 7.543172 TCATTTTTCATCATTGCTACAAAGAGC 59.457 33.333 0.00 0.00 43.16 4.09
180 181 8.975410 TCATTTTTCATCATTGCTACAAAGAG 57.025 30.769 0.00 0.00 0.00 2.85
181 182 9.414295 CTTCATTTTTCATCATTGCTACAAAGA 57.586 29.630 0.00 0.00 0.00 2.52
182 183 8.653338 CCTTCATTTTTCATCATTGCTACAAAG 58.347 33.333 0.00 0.00 0.00 2.77
183 184 8.149647 ACCTTCATTTTTCATCATTGCTACAAA 58.850 29.630 0.00 0.00 0.00 2.83
184 185 7.669427 ACCTTCATTTTTCATCATTGCTACAA 58.331 30.769 0.00 0.00 0.00 2.41
185 186 7.230849 ACCTTCATTTTTCATCATTGCTACA 57.769 32.000 0.00 0.00 0.00 2.74
186 187 8.538409 AAACCTTCATTTTTCATCATTGCTAC 57.462 30.769 0.00 0.00 0.00 3.58
187 188 9.558396 AAAAACCTTCATTTTTCATCATTGCTA 57.442 25.926 0.00 0.00 37.21 3.49
188 189 8.454570 AAAAACCTTCATTTTTCATCATTGCT 57.545 26.923 0.00 0.00 37.21 3.91
198 199 4.364860 CGTCGGGAAAAACCTTCATTTTT 58.635 39.130 0.00 0.00 42.94 1.94
199 200 3.243602 CCGTCGGGAAAAACCTTCATTTT 60.244 43.478 2.34 0.00 38.98 1.82
200 201 2.295070 CCGTCGGGAAAAACCTTCATTT 59.705 45.455 2.34 0.00 38.98 2.32
201 202 1.883926 CCGTCGGGAAAAACCTTCATT 59.116 47.619 2.34 0.00 38.98 2.57
202 203 1.202842 ACCGTCGGGAAAAACCTTCAT 60.203 47.619 17.28 0.00 38.98 2.57
203 204 0.180878 ACCGTCGGGAAAAACCTTCA 59.819 50.000 17.28 0.00 38.98 3.02
204 205 0.589708 CACCGTCGGGAAAAACCTTC 59.410 55.000 17.28 0.00 38.98 3.46
205 206 0.820482 CCACCGTCGGGAAAAACCTT 60.820 55.000 17.28 0.00 38.98 3.50
206 207 1.228033 CCACCGTCGGGAAAAACCT 60.228 57.895 17.28 0.00 38.98 3.50
207 208 2.911484 GCCACCGTCGGGAAAAACC 61.911 63.158 17.28 0.00 36.97 3.27
208 209 2.640989 GCCACCGTCGGGAAAAAC 59.359 61.111 17.28 0.00 36.97 2.43
209 210 2.973600 CGCCACCGTCGGGAAAAA 60.974 61.111 17.28 0.00 36.97 1.94
210 211 4.992511 CCGCCACCGTCGGGAAAA 62.993 66.667 17.28 0.00 42.99 2.29
220 221 4.629523 TTTCCCGACACCGCCACC 62.630 66.667 0.00 0.00 0.00 4.61
221 222 3.047877 CTTTCCCGACACCGCCAC 61.048 66.667 0.00 0.00 0.00 5.01
222 223 4.323477 CCTTTCCCGACACCGCCA 62.323 66.667 0.00 0.00 0.00 5.69
223 224 4.324991 ACCTTTCCCGACACCGCC 62.325 66.667 0.00 0.00 0.00 6.13
224 225 3.047877 CACCTTTCCCGACACCGC 61.048 66.667 0.00 0.00 0.00 5.68
225 226 2.358247 CCACCTTTCCCGACACCG 60.358 66.667 0.00 0.00 0.00 4.94
226 227 2.033602 CCCACCTTTCCCGACACC 59.966 66.667 0.00 0.00 0.00 4.16
227 228 1.003718 CTCCCACCTTTCCCGACAC 60.004 63.158 0.00 0.00 0.00 3.67
228 229 2.890766 GCTCCCACCTTTCCCGACA 61.891 63.158 0.00 0.00 0.00 4.35
229 230 2.046217 GCTCCCACCTTTCCCGAC 60.046 66.667 0.00 0.00 0.00 4.79
230 231 3.327404 GGCTCCCACCTTTCCCGA 61.327 66.667 0.00 0.00 0.00 5.14
231 232 4.426313 GGGCTCCCACCTTTCCCG 62.426 72.222 0.00 0.00 35.81 5.14
232 233 3.264845 TGGGCTCCCACCTTTCCC 61.265 66.667 2.93 0.00 41.89 3.97
233 234 2.356667 CTGGGCTCCCACCTTTCC 59.643 66.667 2.93 0.00 41.89 3.13
234 235 2.356667 CCTGGGCTCCCACCTTTC 59.643 66.667 2.93 0.00 41.89 2.62
235 236 3.984732 GCCTGGGCTCCCACCTTT 61.985 66.667 2.93 0.00 41.89 3.11
258 259 2.125310 TAACGCACCTCGCCATGG 60.125 61.111 7.63 7.63 43.23 3.66
259 260 2.173669 CCTAACGCACCTCGCCATG 61.174 63.158 0.00 0.00 43.23 3.66
260 261 2.186903 CCTAACGCACCTCGCCAT 59.813 61.111 0.00 0.00 43.23 4.40
261 262 4.752879 GCCTAACGCACCTCGCCA 62.753 66.667 0.00 0.00 43.23 5.69
279 280 4.545706 TCCCAATAGCTGCCGCCG 62.546 66.667 0.00 0.00 36.60 6.46
280 281 2.592861 CTCCCAATAGCTGCCGCC 60.593 66.667 0.00 0.00 36.60 6.13
281 282 2.592861 CCTCCCAATAGCTGCCGC 60.593 66.667 0.00 0.00 0.00 6.53
282 283 2.592861 GCCTCCCAATAGCTGCCG 60.593 66.667 0.00 0.00 0.00 5.69
283 284 1.076777 TTGCCTCCCAATAGCTGCC 60.077 57.895 0.00 0.00 0.00 4.85
284 285 0.107017 TCTTGCCTCCCAATAGCTGC 60.107 55.000 0.00 0.00 31.91 5.25
285 286 1.476471 CCTCTTGCCTCCCAATAGCTG 60.476 57.143 0.00 0.00 31.91 4.24
286 287 0.842635 CCTCTTGCCTCCCAATAGCT 59.157 55.000 0.00 0.00 31.91 3.32
287 288 0.179006 CCCTCTTGCCTCCCAATAGC 60.179 60.000 0.00 0.00 31.91 2.97
288 289 0.179006 GCCCTCTTGCCTCCCAATAG 60.179 60.000 0.00 0.00 31.91 1.73
289 290 1.922821 GCCCTCTTGCCTCCCAATA 59.077 57.895 0.00 0.00 31.91 1.90
290 291 2.685999 GCCCTCTTGCCTCCCAAT 59.314 61.111 0.00 0.00 31.91 3.16
291 292 4.033776 CGCCCTCTTGCCTCCCAA 62.034 66.667 0.00 0.00 0.00 4.12
351 353 0.881118 ATGTAAACAACCAGCAGCCG 59.119 50.000 0.00 0.00 0.00 5.52
353 355 3.504863 CATGATGTAAACAACCAGCAGC 58.495 45.455 0.00 0.00 29.55 5.25
362 364 0.724549 GACCGCGCATGATGTAAACA 59.275 50.000 8.75 0.00 0.00 2.83
385 387 6.138088 CACCAAGTGATGCAAATATACATCG 58.862 40.000 0.00 0.00 44.57 3.84
398 400 3.389925 AAAATGCACCACCAAGTGATG 57.610 42.857 0.00 0.00 40.34 3.07
522 525 2.187946 CTCCATGGGTGCGTCTCC 59.812 66.667 13.02 0.00 0.00 3.71
525 528 2.821366 CAGCTCCATGGGTGCGTC 60.821 66.667 13.02 0.00 45.53 5.19
539 542 2.991190 CAACACATTCATTCTTGGCAGC 59.009 45.455 0.00 0.00 0.00 5.25
543 546 7.161773 AGTATTCCAACACATTCATTCTTGG 57.838 36.000 0.00 0.00 33.89 3.61
559 562 9.527157 TCCTCACATGAAATTTTAAGTATTCCA 57.473 29.630 0.00 0.00 0.00 3.53
630 633 5.122396 GTGGGTGTGTCATTTGAGAGTAATC 59.878 44.000 0.00 0.00 0.00 1.75
632 635 4.385825 GTGGGTGTGTCATTTGAGAGTAA 58.614 43.478 0.00 0.00 0.00 2.24
634 637 2.806745 CGTGGGTGTGTCATTTGAGAGT 60.807 50.000 0.00 0.00 0.00 3.24
635 638 1.800586 CGTGGGTGTGTCATTTGAGAG 59.199 52.381 0.00 0.00 0.00 3.20
636 639 1.140052 ACGTGGGTGTGTCATTTGAGA 59.860 47.619 0.00 0.00 0.00 3.27
637 640 1.264020 CACGTGGGTGTGTCATTTGAG 59.736 52.381 7.95 0.00 39.38 3.02
638 641 1.304254 CACGTGGGTGTGTCATTTGA 58.696 50.000 7.95 0.00 39.38 2.69
639 642 3.843632 CACGTGGGTGTGTCATTTG 57.156 52.632 7.95 0.00 39.38 2.32
649 652 0.250166 GGCTCTTTACACACGTGGGT 60.250 55.000 28.83 28.83 34.93 4.51
650 653 0.953960 GGGCTCTTTACACACGTGGG 60.954 60.000 18.21 18.21 34.19 4.61
651 654 0.953960 GGGGCTCTTTACACACGTGG 60.954 60.000 21.57 11.39 34.19 4.94
652 655 0.250124 TGGGGCTCTTTACACACGTG 60.250 55.000 15.48 15.48 0.00 4.49
653 656 0.470766 TTGGGGCTCTTTACACACGT 59.529 50.000 0.00 0.00 0.00 4.49
654 657 1.156736 CTTGGGGCTCTTTACACACG 58.843 55.000 0.00 0.00 0.00 4.49
655 658 0.881796 GCTTGGGGCTCTTTACACAC 59.118 55.000 0.00 0.00 38.06 3.82
656 659 0.251165 GGCTTGGGGCTCTTTACACA 60.251 55.000 0.00 0.00 41.46 3.72
657 660 1.305930 CGGCTTGGGGCTCTTTACAC 61.306 60.000 0.00 0.00 41.46 2.90
658 661 1.002624 CGGCTTGGGGCTCTTTACA 60.003 57.895 0.00 0.00 41.46 2.41
659 662 0.744771 CTCGGCTTGGGGCTCTTTAC 60.745 60.000 0.00 0.00 41.46 2.01
660 663 1.602237 CTCGGCTTGGGGCTCTTTA 59.398 57.895 0.00 0.00 41.46 1.85
661 664 2.352805 CTCGGCTTGGGGCTCTTT 59.647 61.111 0.00 0.00 41.46 2.52
662 665 4.416738 GCTCGGCTTGGGGCTCTT 62.417 66.667 0.00 0.00 41.46 2.85
682 685 1.277557 TCTTCCTCTCTCTTTGCTGCC 59.722 52.381 0.00 0.00 0.00 4.85
693 696 1.552337 TCACATGGCTGTCTTCCTCTC 59.448 52.381 0.00 0.00 31.62 3.20
705 708 0.664761 CCGGTCAATCATCACATGGC 59.335 55.000 0.00 0.00 0.00 4.40
706 709 1.942657 GACCGGTCAATCATCACATGG 59.057 52.381 29.75 0.00 0.00 3.66
774 777 1.563879 CTCTCTCTCCCAGGTCTCAGA 59.436 57.143 0.00 0.00 0.00 3.27
781 784 0.396974 CACCCTCTCTCTCTCCCAGG 60.397 65.000 0.00 0.00 0.00 4.45
783 786 1.149782 ACCACCCTCTCTCTCTCCCA 61.150 60.000 0.00 0.00 0.00 4.37
784 787 0.686112 CACCACCCTCTCTCTCTCCC 60.686 65.000 0.00 0.00 0.00 4.30
785 788 1.326951 GCACCACCCTCTCTCTCTCC 61.327 65.000 0.00 0.00 0.00 3.71
786 789 0.613292 TGCACCACCCTCTCTCTCTC 60.613 60.000 0.00 0.00 0.00 3.20
787 790 0.042431 ATGCACCACCCTCTCTCTCT 59.958 55.000 0.00 0.00 0.00 3.10
788 791 0.177604 CATGCACCACCCTCTCTCTC 59.822 60.000 0.00 0.00 0.00 3.20
789 792 1.270414 CCATGCACCACCCTCTCTCT 61.270 60.000 0.00 0.00 0.00 3.10
790 793 1.222936 CCATGCACCACCCTCTCTC 59.777 63.158 0.00 0.00 0.00 3.20
791 794 2.976490 GCCATGCACCACCCTCTCT 61.976 63.158 0.00 0.00 0.00 3.10
792 795 2.439156 GCCATGCACCACCCTCTC 60.439 66.667 0.00 0.00 0.00 3.20
793 796 3.259314 TGCCATGCACCACCCTCT 61.259 61.111 0.00 0.00 31.71 3.69
887 891 2.658325 GCTTGTCTTAAACTTGCATGCG 59.342 45.455 14.09 1.59 0.00 4.73
906 914 0.721718 GATCAAACTTACTGCGCGCT 59.278 50.000 33.29 16.10 0.00 5.92
907 915 0.247695 GGATCAAACTTACTGCGCGC 60.248 55.000 27.26 27.26 0.00 6.86
908 916 1.075542 TGGATCAAACTTACTGCGCG 58.924 50.000 0.00 0.00 0.00 6.86
909 917 3.487544 GGAATGGATCAAACTTACTGCGC 60.488 47.826 0.00 0.00 0.00 6.09
910 918 3.689161 TGGAATGGATCAAACTTACTGCG 59.311 43.478 0.00 0.00 0.00 5.18
911 919 4.702131 AGTGGAATGGATCAAACTTACTGC 59.298 41.667 0.00 0.00 0.00 4.40
912 920 5.392380 GCAGTGGAATGGATCAAACTTACTG 60.392 44.000 10.26 10.26 35.99 2.74
953 961 1.560004 CTTGCTGCGCTTTGTCTCGA 61.560 55.000 9.73 0.00 0.00 4.04
978 986 4.414677 TCAATGGATGATCGATCTCCTCT 58.585 43.478 28.60 19.64 31.50 3.69
979 987 4.797800 TCAATGGATGATCGATCTCCTC 57.202 45.455 28.60 21.13 31.50 3.71
1086 1108 4.069232 TGCGAGTGGAAGAGGGCG 62.069 66.667 0.00 0.00 0.00 6.13
1092 1114 2.022129 GTGGTCGTGCGAGTGGAAG 61.022 63.158 0.00 0.00 0.00 3.46
1127 1149 3.135530 AGAAGAAGACTTGTCCTTGTGCT 59.864 43.478 0.00 0.00 36.39 4.40
1128 1150 3.471680 AGAAGAAGACTTGTCCTTGTGC 58.528 45.455 0.00 0.00 36.39 4.57
1129 1151 4.513318 GGAAGAAGAAGACTTGTCCTTGTG 59.487 45.833 0.00 0.00 35.61 3.33
1182 1204 4.867599 GGAAGGTAGGTCGCGGCG 62.868 72.222 17.70 17.70 0.00 6.46
1204 1226 1.984424 AGAAGCCTTCTCCTTCTGCTT 59.016 47.619 0.00 0.00 45.31 3.91
1205 1227 1.655372 AGAAGCCTTCTCCTTCTGCT 58.345 50.000 0.00 0.00 45.31 4.24
1219 1262 0.326264 TCTGGCCAAGAAGGAGAAGC 59.674 55.000 7.01 0.00 41.22 3.86
1224 1267 0.902984 TAGCGTCTGGCCAAGAAGGA 60.903 55.000 7.01 0.00 45.17 3.36
1225 1268 0.036388 TTAGCGTCTGGCCAAGAAGG 60.036 55.000 7.01 2.16 45.17 3.46
1226 1269 1.079503 GTTAGCGTCTGGCCAAGAAG 58.920 55.000 7.01 10.13 45.17 2.85
1227 1270 0.669318 CGTTAGCGTCTGGCCAAGAA 60.669 55.000 7.01 0.00 45.17 2.52
1228 1271 1.080093 CGTTAGCGTCTGGCCAAGA 60.080 57.895 7.01 3.54 45.17 3.02
1229 1272 2.740714 GCGTTAGCGTCTGGCCAAG 61.741 63.158 7.01 2.02 45.17 3.61
1230 1273 2.740826 GCGTTAGCGTCTGGCCAA 60.741 61.111 7.01 0.00 45.17 4.52
1241 1284 0.300789 GAAGAAATCCGCGGCGTTAG 59.699 55.000 23.51 6.19 0.00 2.34
1311 1354 1.395954 TCCGTCGTCATCGTCTTGTAG 59.604 52.381 0.00 0.00 38.33 2.74
1632 1675 3.179265 CCGCAGCCGACGTACTTG 61.179 66.667 0.00 0.00 36.29 3.16
1744 1787 8.856103 GGCAAATGGGCTTCTACTATTAATTAA 58.144 33.333 0.00 0.00 39.42 1.40
1746 1789 7.290110 GGCAAATGGGCTTCTACTATTAATT 57.710 36.000 0.00 0.00 39.42 1.40
1747 1790 6.901081 GGCAAATGGGCTTCTACTATTAAT 57.099 37.500 0.00 0.00 39.42 1.40
1775 1827 2.080336 GCCCAGCCCAGCCCAATATA 62.080 60.000 0.00 0.00 0.00 0.86
1800 1862 8.934023 AAATGAAAATTAGAGGTGTAGTCCAA 57.066 30.769 0.00 0.00 0.00 3.53
1841 1903 6.752351 TCGAGTAAATTAAGACAAGCTAGCTG 59.248 38.462 20.16 14.74 0.00 4.24
1843 1905 6.752815 AGTCGAGTAAATTAAGACAAGCTAGC 59.247 38.462 6.62 6.62 34.56 3.42
1917 1983 7.268586 CAAAGATATTACACAGTGTAGAGCCT 58.731 38.462 13.20 7.51 33.92 4.58
1919 1985 6.018669 GCCAAAGATATTACACAGTGTAGAGC 60.019 42.308 13.20 8.78 33.92 4.09
1925 1991 3.312421 CGGGCCAAAGATATTACACAGTG 59.688 47.826 4.39 0.00 0.00 3.66
1927 1993 2.290641 GCGGGCCAAAGATATTACACAG 59.709 50.000 4.39 0.00 0.00 3.66
1972 2039 7.063074 GTGTGATGTAAAAAGTATGCGTAGAGT 59.937 37.037 0.00 0.00 0.00 3.24
1973 2040 7.062956 TGTGTGATGTAAAAAGTATGCGTAGAG 59.937 37.037 0.00 0.00 0.00 2.43
1975 2042 7.056002 TGTGTGATGTAAAAAGTATGCGTAG 57.944 36.000 0.00 0.00 0.00 3.51
1977 2044 5.933187 TGTGTGATGTAAAAAGTATGCGT 57.067 34.783 0.00 0.00 0.00 5.24
1978 2045 7.243487 AGATTGTGTGATGTAAAAAGTATGCG 58.757 34.615 0.00 0.00 0.00 4.73
1979 2046 8.236586 TGAGATTGTGTGATGTAAAAAGTATGC 58.763 33.333 0.00 0.00 0.00 3.14
1980 2047 9.546909 GTGAGATTGTGTGATGTAAAAAGTATG 57.453 33.333 0.00 0.00 0.00 2.39
1981 2048 8.730680 GGTGAGATTGTGTGATGTAAAAAGTAT 58.269 33.333 0.00 0.00 0.00 2.12
2051 2130 3.159472 TGAGCAAGGAATTGAAGTGCAT 58.841 40.909 0.00 0.00 37.68 3.96
2053 2132 3.005155 AGTTGAGCAAGGAATTGAAGTGC 59.995 43.478 0.00 0.00 35.41 4.40
2058 2137 7.106439 TGTTTTTAGTTGAGCAAGGAATTGA 57.894 32.000 0.00 0.00 0.00 2.57
2059 2138 7.254421 GGTTGTTTTTAGTTGAGCAAGGAATTG 60.254 37.037 0.00 0.00 0.00 2.32
2060 2139 6.761242 GGTTGTTTTTAGTTGAGCAAGGAATT 59.239 34.615 0.00 0.00 0.00 2.17
2061 2140 6.280643 GGTTGTTTTTAGTTGAGCAAGGAAT 58.719 36.000 0.00 0.00 0.00 3.01
2095 2174 4.879545 GTGTGTACTGGAACTCAAAAGGAA 59.120 41.667 0.00 0.00 0.00 3.36
2097 2176 3.564225 GGTGTGTACTGGAACTCAAAAGG 59.436 47.826 0.00 0.00 0.00 3.11
2098 2177 4.196193 TGGTGTGTACTGGAACTCAAAAG 58.804 43.478 0.00 0.00 0.00 2.27
2102 2181 3.513912 CCTATGGTGTGTACTGGAACTCA 59.486 47.826 0.00 0.00 0.00 3.41
2105 2184 2.236395 AGCCTATGGTGTGTACTGGAAC 59.764 50.000 0.00 0.00 0.00 3.62
2111 2190 3.718815 GCTTCTAGCCTATGGTGTGTAC 58.281 50.000 0.00 0.00 34.48 2.90
2205 2289 2.678336 GTGCTCTAGCCGCAAATTAACT 59.322 45.455 7.92 0.00 39.39 2.24
2223 2307 3.065371 GCTACAATCCATGTACTTGGTGC 59.935 47.826 23.17 15.58 43.63 5.01
2260 2344 0.807275 TGATGAAGACGATGCCTGCG 60.807 55.000 0.00 0.00 0.00 5.18
2266 2350 4.691175 AGGATCAAGTGATGAAGACGATG 58.309 43.478 0.00 0.00 42.54 3.84
2267 2351 6.453943 CATAGGATCAAGTGATGAAGACGAT 58.546 40.000 0.00 0.00 42.54 3.73
2268 2352 5.221322 CCATAGGATCAAGTGATGAAGACGA 60.221 44.000 0.00 0.00 42.54 4.20
2287 2371 3.002791 ACAGTTTCATGTCACGCCATAG 58.997 45.455 0.00 0.00 0.00 2.23
2290 2374 2.535012 TACAGTTTCATGTCACGCCA 57.465 45.000 0.00 0.00 34.56 5.69
2291 2375 2.159627 CCTTACAGTTTCATGTCACGCC 59.840 50.000 0.00 0.00 34.56 5.68
2292 2376 2.159627 CCCTTACAGTTTCATGTCACGC 59.840 50.000 0.00 0.00 34.56 5.34
2293 2377 2.159627 GCCCTTACAGTTTCATGTCACG 59.840 50.000 0.00 0.00 34.56 4.35
2294 2378 2.159627 CGCCCTTACAGTTTCATGTCAC 59.840 50.000 0.00 0.00 34.56 3.67
2295 2379 2.037902 TCGCCCTTACAGTTTCATGTCA 59.962 45.455 0.00 0.00 34.56 3.58
2296 2380 2.673368 CTCGCCCTTACAGTTTCATGTC 59.327 50.000 0.00 0.00 34.56 3.06
2297 2381 2.615493 CCTCGCCCTTACAGTTTCATGT 60.615 50.000 0.00 0.00 37.19 3.21
2298 2382 2.009774 CCTCGCCCTTACAGTTTCATG 58.990 52.381 0.00 0.00 0.00 3.07
2299 2383 1.628846 ACCTCGCCCTTACAGTTTCAT 59.371 47.619 0.00 0.00 0.00 2.57
2300 2384 1.053424 ACCTCGCCCTTACAGTTTCA 58.947 50.000 0.00 0.00 0.00 2.69
2301 2385 1.270678 ACACCTCGCCCTTACAGTTTC 60.271 52.381 0.00 0.00 0.00 2.78
2302 2386 0.763035 ACACCTCGCCCTTACAGTTT 59.237 50.000 0.00 0.00 0.00 2.66
2303 2387 0.034896 CACACCTCGCCCTTACAGTT 59.965 55.000 0.00 0.00 0.00 3.16
2304 2388 1.671742 CACACCTCGCCCTTACAGT 59.328 57.895 0.00 0.00 0.00 3.55
2305 2389 1.741770 GCACACCTCGCCCTTACAG 60.742 63.158 0.00 0.00 0.00 2.74
2306 2390 2.167398 GAGCACACCTCGCCCTTACA 62.167 60.000 0.00 0.00 0.00 2.41
2307 2391 1.448013 GAGCACACCTCGCCCTTAC 60.448 63.158 0.00 0.00 0.00 2.34
2308 2392 1.911269 TGAGCACACCTCGCCCTTA 60.911 57.895 0.00 0.00 43.82 2.69
2309 2393 3.241530 TGAGCACACCTCGCCCTT 61.242 61.111 0.00 0.00 43.82 3.95
2310 2394 4.008933 GTGAGCACACCTCGCCCT 62.009 66.667 2.45 0.00 43.70 5.19
2314 2398 3.680786 TCCCGTGAGCACACCTCG 61.681 66.667 8.77 0.00 43.82 4.63
2315 2399 2.048127 GTCCCGTGAGCACACCTC 60.048 66.667 8.77 0.00 43.34 3.85
2316 2400 3.626924 GGTCCCGTGAGCACACCT 61.627 66.667 8.77 0.00 43.34 4.00
2317 2401 3.178540 AAGGTCCCGTGAGCACACC 62.179 63.158 8.77 1.38 43.34 4.16
2318 2402 1.668151 GAAGGTCCCGTGAGCACAC 60.668 63.158 3.95 3.95 41.53 3.82
2319 2403 0.541063 TAGAAGGTCCCGTGAGCACA 60.541 55.000 0.00 0.00 41.53 4.57
2320 2404 0.824759 ATAGAAGGTCCCGTGAGCAC 59.175 55.000 0.00 0.00 41.53 4.40
2321 2405 1.568504 AATAGAAGGTCCCGTGAGCA 58.431 50.000 0.00 0.00 41.53 4.26
2322 2406 2.093658 TCAAATAGAAGGTCCCGTGAGC 60.094 50.000 0.00 0.00 39.33 4.26
2323 2407 3.522553 GTCAAATAGAAGGTCCCGTGAG 58.477 50.000 0.00 0.00 0.00 3.51
2324 2408 2.094390 CGTCAAATAGAAGGTCCCGTGA 60.094 50.000 0.00 0.00 0.00 4.35
2325 2409 2.268298 CGTCAAATAGAAGGTCCCGTG 58.732 52.381 0.00 0.00 0.00 4.94
2326 2410 1.405121 GCGTCAAATAGAAGGTCCCGT 60.405 52.381 0.00 0.00 0.00 5.28
2327 2411 1.134788 AGCGTCAAATAGAAGGTCCCG 60.135 52.381 0.00 0.00 30.55 5.14
2328 2412 2.552031 GAGCGTCAAATAGAAGGTCCC 58.448 52.381 0.00 0.00 44.17 4.46
2331 2415 5.163540 ACGAATAGAGCGTCAAATAGAAGGT 60.164 40.000 0.00 0.00 37.42 3.50
2332 2416 5.282510 ACGAATAGAGCGTCAAATAGAAGG 58.717 41.667 0.00 0.00 37.42 3.46
2343 2427 4.307432 CCCATATTTGACGAATAGAGCGT 58.693 43.478 1.72 0.00 45.79 5.07
2344 2428 3.123621 GCCCATATTTGACGAATAGAGCG 59.876 47.826 1.72 0.00 33.87 5.03
2345 2429 3.123621 CGCCCATATTTGACGAATAGAGC 59.876 47.826 1.72 3.57 33.87 4.09
2346 2430 4.150627 CACGCCCATATTTGACGAATAGAG 59.849 45.833 1.72 0.00 33.87 2.43
2347 2431 4.055360 CACGCCCATATTTGACGAATAGA 58.945 43.478 1.72 0.00 33.87 1.98
2348 2432 4.055360 TCACGCCCATATTTGACGAATAG 58.945 43.478 1.72 0.00 33.87 1.73
2349 2433 4.061357 TCACGCCCATATTTGACGAATA 57.939 40.909 0.00 0.00 34.82 1.75
2350 2434 2.912771 TCACGCCCATATTTGACGAAT 58.087 42.857 0.00 0.00 0.00 3.34
2351 2435 2.388310 TCACGCCCATATTTGACGAA 57.612 45.000 0.00 0.00 0.00 3.85
2352 2436 2.209273 CATCACGCCCATATTTGACGA 58.791 47.619 0.00 0.00 0.00 4.20
2353 2437 1.334059 GCATCACGCCCATATTTGACG 60.334 52.381 0.00 0.00 32.94 4.35
2354 2438 1.675483 TGCATCACGCCCATATTTGAC 59.325 47.619 0.00 0.00 41.33 3.18
2355 2439 2.049888 TGCATCACGCCCATATTTGA 57.950 45.000 0.00 0.00 41.33 2.69
2356 2440 3.752747 TCTATGCATCACGCCCATATTTG 59.247 43.478 0.19 0.00 41.33 2.32
2357 2441 4.005650 CTCTATGCATCACGCCCATATTT 58.994 43.478 0.19 0.00 41.33 1.40
2358 2442 3.008375 ACTCTATGCATCACGCCCATATT 59.992 43.478 0.19 0.00 41.33 1.28
2359 2443 2.568956 ACTCTATGCATCACGCCCATAT 59.431 45.455 0.19 0.00 41.33 1.78
2360 2444 1.970640 ACTCTATGCATCACGCCCATA 59.029 47.619 0.19 0.00 41.33 2.74
2361 2445 0.761187 ACTCTATGCATCACGCCCAT 59.239 50.000 0.19 0.00 41.33 4.00
2362 2446 0.179076 CACTCTATGCATCACGCCCA 60.179 55.000 0.19 0.00 41.33 5.36
2363 2447 2.609825 CACTCTATGCATCACGCCC 58.390 57.895 0.19 0.00 41.33 6.13
2373 2457 2.224233 CCCAGTCAGGATGCACTCTATG 60.224 54.545 0.00 0.00 41.22 2.23
2374 2458 2.045524 CCCAGTCAGGATGCACTCTAT 58.954 52.381 0.00 0.00 41.22 1.98
2375 2459 1.489481 CCCAGTCAGGATGCACTCTA 58.511 55.000 0.00 0.00 41.22 2.43
2376 2460 1.908340 GCCCAGTCAGGATGCACTCT 61.908 60.000 0.00 0.00 41.22 3.24
2377 2461 1.451028 GCCCAGTCAGGATGCACTC 60.451 63.158 0.00 0.00 41.22 3.51
2378 2462 2.673523 GCCCAGTCAGGATGCACT 59.326 61.111 0.00 0.00 41.22 4.40
2379 2463 2.439156 GGCCCAGTCAGGATGCAC 60.439 66.667 0.00 0.00 41.22 4.57
2380 2464 4.100084 CGGCCCAGTCAGGATGCA 62.100 66.667 0.00 0.00 41.22 3.96
2381 2465 3.785859 TCGGCCCAGTCAGGATGC 61.786 66.667 0.00 0.00 41.22 3.91
2382 2466 2.187946 GTCGGCCCAGTCAGGATG 59.812 66.667 0.00 0.00 41.22 3.51
2383 2467 3.083997 GGTCGGCCCAGTCAGGAT 61.084 66.667 0.00 0.00 41.22 3.24
2395 2479 2.676121 TTGCAGGCAATGGGTCGG 60.676 61.111 1.93 0.00 0.00 4.79
2396 2480 1.597797 ATGTTGCAGGCAATGGGTCG 61.598 55.000 10.21 0.00 38.28 4.79
2397 2481 0.609662 AATGTTGCAGGCAATGGGTC 59.390 50.000 10.21 0.00 38.28 4.46
2398 2482 0.322322 CAATGTTGCAGGCAATGGGT 59.678 50.000 10.21 0.00 38.28 4.51
2399 2483 0.322322 ACAATGTTGCAGGCAATGGG 59.678 50.000 10.21 3.62 38.28 4.00
2400 2484 1.717194 GACAATGTTGCAGGCAATGG 58.283 50.000 10.21 3.29 38.28 3.16
2401 2485 1.342555 CGACAATGTTGCAGGCAATG 58.657 50.000 10.21 7.21 38.28 2.82
2402 2486 0.388907 GCGACAATGTTGCAGGCAAT 60.389 50.000 19.92 0.00 42.10 3.56
2403 2487 1.007502 GCGACAATGTTGCAGGCAA 60.008 52.632 19.92 1.93 42.10 4.52
2404 2488 2.644418 GCGACAATGTTGCAGGCA 59.356 55.556 19.92 0.00 42.10 4.75
2405 2489 2.257286 ATCGCGACAATGTTGCAGGC 62.257 55.000 23.66 5.52 42.60 4.85
2406 2490 0.521867 CATCGCGACAATGTTGCAGG 60.522 55.000 23.66 9.87 42.60 4.85
2407 2491 0.166597 ACATCGCGACAATGTTGCAG 59.833 50.000 23.66 16.25 42.60 4.41
2408 2492 0.110283 CACATCGCGACAATGTTGCA 60.110 50.000 23.66 12.20 42.60 4.08
2409 2493 1.398022 GCACATCGCGACAATGTTGC 61.398 55.000 12.93 15.34 39.38 4.17
2410 2494 2.628972 GCACATCGCGACAATGTTG 58.371 52.632 12.93 7.38 35.19 3.33
2421 2505 2.577644 GGCACAATGCGCACATCG 60.578 61.111 14.90 3.57 46.21 3.84
2422 2506 2.567569 TGGCACAATGCGCACATC 59.432 55.556 14.90 0.00 46.21 3.06
2529 2613 9.008965 TGACAAGCATTTTCAAATAGTTAGCTA 57.991 29.630 0.00 0.00 0.00 3.32
2530 2614 7.885297 TGACAAGCATTTTCAAATAGTTAGCT 58.115 30.769 0.00 0.00 0.00 3.32
2531 2615 8.519492 TTGACAAGCATTTTCAAATAGTTAGC 57.481 30.769 0.00 0.00 0.00 3.09
2568 2652 8.756864 GGTGTTTATTTAAAATTTTCGCAGACA 58.243 29.630 6.72 4.58 34.32 3.41
2569 2653 7.942538 CGGTGTTTATTTAAAATTTTCGCAGAC 59.057 33.333 6.72 2.13 34.32 3.51
2570 2654 7.861372 TCGGTGTTTATTTAAAATTTTCGCAGA 59.139 29.630 6.72 1.77 0.00 4.26
2571 2655 7.998141 TCGGTGTTTATTTAAAATTTTCGCAG 58.002 30.769 6.72 0.00 0.00 5.18
2572 2656 7.925703 TCGGTGTTTATTTAAAATTTTCGCA 57.074 28.000 6.72 0.00 0.00 5.10
2697 2781 6.487689 TTGCAGTTTTGGAAATTCGTTTTT 57.512 29.167 0.00 0.00 31.17 1.94
2698 2782 6.487689 TTTGCAGTTTTGGAAATTCGTTTT 57.512 29.167 0.00 0.00 39.34 2.43
2706 2790 5.728471 TGTCTGAATTTGCAGTTTTGGAAA 58.272 33.333 0.00 0.00 46.53 3.13
2707 2791 5.105392 ACTGTCTGAATTTGCAGTTTTGGAA 60.105 36.000 0.00 0.00 38.86 3.53
2708 2792 4.402155 ACTGTCTGAATTTGCAGTTTTGGA 59.598 37.500 0.00 0.00 38.86 3.53
2709 2793 4.685924 ACTGTCTGAATTTGCAGTTTTGG 58.314 39.130 0.00 0.00 38.86 3.28
2710 2794 4.741676 GGACTGTCTGAATTTGCAGTTTTG 59.258 41.667 7.85 0.00 41.59 2.44
2711 2795 4.202151 GGGACTGTCTGAATTTGCAGTTTT 60.202 41.667 7.85 0.00 41.59 2.43
2712 2796 3.319122 GGGACTGTCTGAATTTGCAGTTT 59.681 43.478 7.85 0.00 41.59 2.66
2713 2797 2.887152 GGGACTGTCTGAATTTGCAGTT 59.113 45.455 7.85 0.00 41.59 3.16
2714 2798 2.158623 TGGGACTGTCTGAATTTGCAGT 60.159 45.455 7.85 0.00 43.85 4.40
2715 2799 2.507484 TGGGACTGTCTGAATTTGCAG 58.493 47.619 7.85 0.00 37.24 4.41
2716 2800 2.655090 TGGGACTGTCTGAATTTGCA 57.345 45.000 7.85 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.