>input_sequence_70180
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-------------------------------------------------------------ATGGCGCCCGGCGGGCTTG
TGCTCCTCGGCCTCCTTCTCCTAGTGCTAGTGGACGCGCTTGCCGCCGTCCACATCGACATCGCGGCCGCCCTCTTCCAC
TCGCACGACCACCTCGGCGGCAACAAGCAGCACAAGGACAAGTCTTCTTCTTCCTCCTCCGTGCCTTCATGGCCGGACGG
CAACGCCGCGACCTACCTTCCGCCGAAGC---------------------AGAAGGAGAAGGCTTCTCCTTCTTGGCCAG
ACGCTAACGCCGCGGATTTCTTCGCGGAGGCGGCCAAGAAGGGGCTGCGGTCCTTTACCGGCGGGCGGGGCGGCTACAAG
ACGATGACGACGGAGTTCCTGGACGCGCACAACCGGGTGCGGGCCAAGTACGGCGTGCCGCCGCTGCGGTGGAGCAATAA
GCTGGCGCGGTACGCGCGGCGGTGGTCGGACGCGCGGCGGTTCGACTGCGTGATGATGCACTCGGTGGGTTCACCCTACG
GCGAGAACGTGTTCTGGGGCACCGGGTGGGACTGGAAGGCCGTGGAGGCCGTGGGCGACTGGGCCAGCGAGTCCTCCTTC
TACGACTGGCGGGCGCAGGCCTGCCACCCGGGCCAGGTCTGCGAGCACTTCACGCAGATCGTCTGGCGGACCACCAAGTA
CGTCGGCTGCGGCCGGGCCGAGTGCCTCGCCGGCGGCGTCTTCATCACCTGCTCCTACGACCCGCCCGGGAACTGGAAGG
GAGAGGTGCCGCTCACCTAA------------------------------------------------------------
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>chr1B_1_TraesCS1B01G478500
TGAATTCATGACCAAGCTTGGTCGTTAGATCCCATGTGCTCTTCCCTTCGAAAAACTTCATTAAAATCACCATTGCACAT
TTACATGATCGTCTTCTTCTTCTTCTTGATCAACAACCAAACTCTTCTTCCTCGGAGCTTCATGAGCTTCCCGATTCTTC
CACTTCTCCTCATCCTTGAGCTCTTTGTAGCAATGATGAAAAATGAAGGTTTTTCCCGACGGTGGCGGTGTCGGGAAAGG
TGGGAGCCCAGGCGGCGGCCATGGCGAGGTGCGTTAGGCCGGCGGCAGCTATTGGGAGGCAAGAGGGCGGGCGGGTGGTG
GGAAGTTCCCC-TTGGCAGTTGGGCGTCCACGCGGCTGCTGGTTGTTTACATCATGCGCGGTCAAGCGATGTATATTTGC
ATCACTTGGTGGTGCATTTTACATCAGATGTAAAATCTAAGGTTTTTTTTTTTTTTGCATCTGCATCATTTGTTGGAGGG
ACGTTTTTTAACCAAAGTGACGTATATTTCTGTATT-TTTTTTAGGAGACGCACCCATGGAGCTGCCAAGAATGAATGTG
TTGGAATACTTAAAATTTCATGTGAGGATATAAGAAACACACCCGTGGGCCTCTGGGCCTGTCAAAAATGATGATTACTC
TCAAATGACACACCCACGTGTGTAAAGAGCCCCAAGCCGAGCGAGGCAGCAAAGAGAGAGGAAGACAGCCATGTGATGAT
TGACCGGTCAACTCCTGGGAAGTCCTTAGTTTGCCGGGCCCACAGGAAATGATTTGTCTGAGACCTGGGAGAGAGAGAGG
GTGGTGCATGGCAG-CATCCAATTCTGGGGAGTGCATGCATGCTTGCTTGTTGCTTGGCAGCAAAAGGCAGGCTAATTTT
GGTACCAAAAC----GCATGCAAGTTTAAGACAAGCGCGCAGTAAGTTTGATCCATTCCACTGCATACGGCCGGCCACGA
TCGAGACAAAGCGCAGCAAGCAAGGAGAGGAGATC----------GATCAT----CCATTGATGGCGCCCGGCGGGCTTG
TGCTCCTCGGCCTCCTTCTCCTAGTGCTAGTGGACGCGCTTGCCGCCGTCCACATCGACATCGCGGCCGCCCTCTTCCAC
TCGCACGACCACCTCGGCGGCAACAAGCAGCACAAGGACAAGTCTTCTTCTTCCTCCTCCGTGCCTTCATGGCCGGACGG
CAACGCCGCGACCTACCTTCCGCCGAAGC---------------------AGAAGGAGAAGGCTTCTCCTTCTTGGCCAG
ACGCTAACGCCGCGGATTTCTTCGCGGAGGCGGCCAAGAAGGGGCTGCGGTCCTTTACCGGCGGGCGGGGCGGCTACAAG
ACGATGACGACGGAGTTCCTGGACGCGCACAACCGGGTGCGGGCCAAGTACGGCGTGCCGCCGCTGCGGTGGAGCAATAA
GCTGGCGCGGTACGCGCGGCGGTGGTCGGACGCGCGGCGGTTCGACTGCGTGATGATGCACTCGGTGGGTTCACCCTACG
GCGAGAACGTGTTCTGGGGCACCGGGTGGGACTGGAAGGCCGTGGAGGCCGTGGGCGACTGGGCCAGCGAGTCCTCCTTC
TACGACTGGCGGGCGCAGGCCTGCCACCCGGGCCAGGTCTGCGAGCACTTCACGCAGATCGTCTGGCGGACCACCAAGTA
CGTCGGCTGCGGCCGGGCCGAGTGCCTCGCCGGCGGCGTCTTCATCACCTGCTCCTACGACCCGCCCGGGAACTGGAAGG
GAGAGGTGCCGCTCACCTAATTATAATTAATTAAT---------AGTAGAAGCCCATTTGCCTCTTTATATTGGGCTGGG
CTG----------GGCTGGGCTTGGACTACACCTCTAATTTTCATTTTCTTTTTTTATTAGCCAGCTAGCTTG---TCTT
AATTTACTCGACTTTTTTT-ACTTAATTTACTCGATTTGGGACTAGCATTTTTTGATCTGCCAGGCTCTACACTGTGTAA
TATCTTTGGCCCGCGAC-ACTCAATTTTAGCTTTCAGTACTCTACGCAT------------ACTTTTTACATCACACAAT
CTCACCATGCTATGGATATAGGCATTATCTTCAACAATATACGAAAATGATGCACTTCAATTCCTTGCTCAACTAAAAAC
AACCCTTGTTTTTTTCCTTTTGAGTTCCAGTACACACCATAGGCTAGAAGCCCAAAG-ACAACACCTT----TTTTCTTA
AAAAAGACATGTCATTTTCGTTAATTAAGGAGAGAGTGGGAATTGGCTAGTTAATTTGCGGCTAGAGCACCAAGTACATG
GATTGTAGCTAGGCTGAGTGCCACGCAGGCATCGTCTTCATCACTTGATCCTATGGCGTGACATGAAACTGTAAGGGCGA
GGTGTGCTCACGGGACCTTCTATTTGACGCTCTATTCGTCAAATATGGGCGTGATGCATAGAGTGCATCCTGACTGGGCC
GACCCATTGCCTGCAACATTGTCGCGATGTGCGCATTGTGCCAAAAGTTTTTTCCTAGCGTTTTTTGTTTATTTAATGCG
TTATTTATTTAGTTTTAGAAAAAAATATTTTAAAAAGAAAACATTTTAAAAATAGCTAACTATTTGAAAATGCTTGTCAA
AAAATTTAAAATGTCTGCGAAAATTTTAAATAAACACCGATATTTAAAAAATAGAATATTTTTCAAACTTTTGAACATTT
TTTAGAAGCTGCAGACATTTTTTGAATACCAGAAAATTTTAAACATATACTGAAATTAAAAAAAACGAATTTCCAAAACT
GCAAATTCAGACAGTCCCAAA
>chr1D_294
GGGTAG--------------------------------------------------------------------------
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----------------------------------------------------------GCGAGAGGGTGGGCGGGTGGCG
GGAAGTTGCCCTTTGGCAGTTGGGCGTTCACGTGTCTGCTGGTCGTTTACATCATGCGCGGTCAAGTGATGTATATTTGT
ATCACTTGGTGGTGCATTTTACATCAGATGTAAAATCTGAG----TTTTTTTTTTTGCATCTGCATCATTTTTTGGAGGG
AC-TTTTTTAACCTAAGTGATGTATATTTCTGCATTGTTTTTTAAGAAACACACCCATGGACCTGGCAAGAATGAATGTC
TGGGAATACTTAAAATTTCATGTGAGGATATAAGAAACACACCCATGGGCCTCTGGGCCTAGCAAAAATGATTACTCACA
CGAACATAAAAGAGTGATCTATA------CCCCAAGCCGAGCGACGCAGCAAAGA-AGAGGAAGACACGCATGTGATGGT
TGAGTGGTCAACTCATGGGAAGACC-TAGTTTGGCGGGGCCACTGGAAATGATTTGCCTGAGATC-----------GAGG
GTGCTGCATGCGAGCCATCCACTTCTGGGGAC--------TGCATGCATGTTGCTTGGCAGCAAAAGGCAGGCTAATTTT
GGCAGCAAAAGGCATGCATGCAAGTTCAAGACA-------AGT----TTGATCCATTATTC--CATACGGCCA-------
-CGAGACAAAGCGCAGCAAGCAAC----------CAAGGAGAGGAGATCAT----TCATTCATGGCGCCCGGCGGGCTTG
TGCTCCTCGGCCTCCTTCTCCTAGTGCTAGTGGACGCGCCTGCCGCCGTCCACATCGACATCGCGGCGGCCTTGTTCCAC
TCGCACGACCACCTCGGCGGCAACAAGA---AGAAGGACAAGTCTTCTTCTTCCTCTTC---GCCTTCATGGCCAGACGG
CAATGCCGCGACTTACCTTCCGCCGGCGGGC---------AAGAAGGACAAGAAGGAGAAGCCTTCA------TGGCCAG
ACGGTAACGCGGCGGATTTCTTCGCGGAGGCGGCCAAGAAGGGGCTGCGGTCCTTCACGGGCGGGCGGGGCGGGTACAAG
ACGATGACGACGGAGTTCCTGGACGCGCACAACCAGGTGCGGGCCAAGTACGGCGTGCCGCCGCTGCGGTGGAGCAAGAA
GCTGGCGCGGTACGCGCGGCGGTGGTCGGACGCGCGGCGGTTCGACTGCGTGATGATGCACTCGGTGGGGTCCCCCTACG
GCGAGAACGTGTTCTGGGGCACGGGGTGGGACTGGAAGGCCGTGGAGGCCGTGGGCGACTGGGCCAGCGAGTCCTCCTTC
TACGACTGGCGGGCGCAGGCCTGCCACCCGGGCCAGGTCTGCGAGCACTTCACGCAGATCGTGTGGCGGACCACAAAGTA
CGTCGGCTGCGGCCGGGCCGAGTGCCTCGCCGGCGGCGTCTTCATCACCTGCTCCTACGACCCGCCCGGAAACTGGAAGG
GAGAGGTGCCGCTCACCTAATTCTTCA----------------CAGTAGTAACCCATTTGCCTCTTCATATTGGGCTGGG
CTG----------GGCTGGGC-TGGACTACACCTCTAATTTTCATTTTCTTTTT--ATTAGCGAACTAGCTTG---TCTT
AAGTTACTCGACTTTTTTTAACTTAATTTACTCGATTTGGGACTAACATTTTTTGATCTGCCGGACTCTATATTGTGTAA
TATCTTTGGCCCGCGACAACTCAATTTTAGCTTTCAGTCTTTTGGTTTTCATTAGTAATACACTTTTTACATCACACCAT
GTCACCATGCTATGGATATAGGC---ATCTTCAACTATATACGAAAATGGTACACT----TTCCTTGCTCAACTAAAAAT
AACCCTTGTTTTTGTT-TTTGGAATTCCAACACGCACCATAAGCTAGAAGCCCCAAACACAACACCTTTTTCTTTTCTTA
AAAAAGACATGTCATTTTCGTTAATTAAGGAGAGAGTGGGAATTGGCTGGTTAATTTGCGGCTAGACCACCAAGTACATG
GATTGTAGCCAGGCTGAGTGCCATGCAGGTGGCGTCTTCATCACTTGATCATA---------------------------
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>chr1A_709
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----------------------------------------------------------------------ATGTGATGAT
TGACCGGTCAACTCCTGGGAAGTCCTTAGTTTGCCGGGCTCACAGGAAGTGATTTGGCTG-------------------G
GTGGTGCATGGCAG-CATCCAATTCTGGGGACGTACTGCATGCATGCTTGTTGCTTGGCAGCAAAAGGCAGGCTAATTTT
GGTACCAAAAA----GCATGCAAGTTTAAGACA-------AGTAAGTTTGATCCATTCCACTGCATACGGCCGGCCACGA
--GAGACAAAGCGCAGCAAGCAAGGCAACCAAAGCAAAGCAAGGAGATCATATCATCATTCATGGCGCCCGGCGGGGTTG
TGCTCCTCGGCCTCCTTCTCCTGGCGCTGGTGGACGCGCTTGCCGCCGTCCACATCGACATCGCGGCGGCCCTGTTCCAC
TCGCACGACCACCTCGGGGGCAACAAGC---ACAAGGACAAGCAG---TCTTCTTCCTC---GCCTTCGTGGCCAGACGG
CAA---------TTACCTTCCGCCGGCGGGCAACAAGGAGAAGAAGGACAAGAAGGAGAAGCCTTCA------TGGCCGG
ACGGTAACGCCGCGGATTTCTTCGCGGAGGCTGCCAAGAAGGGGCTGCGGTCCTTCACCGGCGGGCGGGGCGGGTACAAG
ACGATGACGACGGAGTTCCTGGACGCGCATAACCAGGTGCGGGCCAAGTACGGCGTGCCGCCGCTGCGGTGGAGCAAGAA
GCTGGCGCGGTACGCGCGGCGGTGGTCGGACGCGCGGCGGTTCGACTGCGTGATGATGCACTCGGTGGGTTCCCCCTACG
GCGAGAACGTCTTCTGGGGCACCGGGTGGGACTGGAAGGCCGTGGAGGCCGTGGGCGACTGGGCCAGCGAGTCCTCCTTC
TACGACTGGCGGGCGCAGGCCTGCCACCCGGGCCAGGTCTGCGAGCACTTCACCCAGATCGTCTGGCGGACCACAAAGTA
CGTCGGCTGCGGCCGGGCCGAGTGCCTCGCCGGCGGCGTCTTCATCACCTGCTCCTACGACCCGCCCGGGAACTGGAAGG
GAGAGGTGCCGCTCACCTAATTCTTTCTTTTTGTTAATTCATTCAGTAGTAGCCCATTTGCCTCTTCATATTGGGCTGGG
CTGGGCTGGGCTGGGCTGGGC-TGGACTACACCTCAAGTTTTCATTTTCTTTTATTA---GCGGACTAGCTTGTCTTCTT
AATTTACTCGACTTTTTTTTACTTAATTTACTCG----------------------------------------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S----------S-
-------S-------------------S----S-S--------S----------------------S------------S
--------------------------------------S--SSSS--------------------------S--------
--S----------S------S-----------S-----------S--S--S----------S---S-------------S
-S------------------------------------------S---------------SS----------S-S-SSSS
SS--SSS-S-SSSSSSSSSSSSSSSSSSS---------------S----------S-----------SS-----------
--------------------------------------------------------S------S-SSSSSSSSSSS----
-------------------------------SSSSS-------S------------------------------------
----------S----------------------SSSSSSS----------------------------------------
S------------------------SS-SS-S-S---------------------S----S-------------------
-------------------------------------------------------------------S-----S------
----------------------------SSS----------------------------SSS------------S-----
---S--------S------------SS-S--------------------------------S----SSSSSSS-------
---S---------------------------------------------------S-----------------S------
----------------------------------S------------------------------------------S--
------------------------------------------------------------------------S-------
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--------------------------------------------------------------------------S-----
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----------------------S-SSS-SS--SS---------------S----------------S-------------
---------------------S----------------------------------------S-S---------------
---------------------------------------------S----------------S-S-----S-S-------
--------------------------------------SS-S-SSSSS-----------------------------S--
S----------------------SSS---------S-------------S-S----SSSS-------------------S
-------------S-SS---S--S-----SS--S-------S-----------S--S-----------------------
------------------------------------------------S-----------------S-------------
---------S-------------S-----SSS------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_308
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------------------------------------------------CTATTGGGAGGCAAGAGGGC------------
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>reverse_2387
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------------------------------------------------------------------AACTGTAAGGGCGA
GGTGTG--------------------------------------------------------------------------
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