Multiple sequence alignment - TraesCS1B01G478200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G478200 chr1B 100.000 3496 0 0 1 3496 686754646 686758141 0.000000e+00 6457.0
1 TraesCS1B01G478200 chr1B 100.000 46 0 0 1630 1675 489201292 489201247 6.220000e-13 86.1
2 TraesCS1B01G478200 chr1B 100.000 45 0 0 1632 1676 688132807 688132763 2.240000e-12 84.2
3 TraesCS1B01G478200 chr1D 90.180 1670 49 50 1880 3496 493711818 493713425 0.000000e+00 2069.0
4 TraesCS1B01G478200 chr1D 79.123 1140 99 91 322 1369 493710029 493711121 0.000000e+00 658.0
5 TraesCS1B01G478200 chr1D 87.850 214 8 13 90 290 493709736 493709944 5.830000e-58 235.0
6 TraesCS1B01G478200 chr1D 87.313 134 5 5 1 133 493709601 493709723 3.640000e-30 143.0
7 TraesCS1B01G478200 chr1D 96.875 64 0 2 1671 1734 374241665 374241726 4.770000e-19 106.0
8 TraesCS1B01G478200 chr1A 86.890 1045 32 26 1897 2912 591955359 591956327 0.000000e+00 1074.0
9 TraesCS1B01G478200 chr1A 97.769 493 11 0 3004 3496 591956444 591956936 0.000000e+00 850.0
10 TraesCS1B01G478200 chr1A 88.802 384 17 24 322 693 591953511 591953880 6.880000e-122 448.0
11 TraesCS1B01G478200 chr1A 87.107 318 21 14 1 311 591953159 591953463 3.340000e-90 342.0
12 TraesCS1B01G478200 chr1A 81.588 277 13 15 1128 1366 591954362 591954638 9.900000e-46 195.0
13 TraesCS1B01G478200 chr1A 94.000 100 4 2 1775 1874 544388805 544388708 2.170000e-32 150.0
14 TraesCS1B01G478200 chr1A 95.312 64 0 2 1671 1734 518802419 518802479 7.990000e-17 99.0
15 TraesCS1B01G478200 chr1A 100.000 46 0 0 1631 1676 551988323 551988278 6.220000e-13 86.1
16 TraesCS1B01G478200 chr1A 92.727 55 3 1 1622 1676 580455037 580454984 1.040000e-10 78.7
17 TraesCS1B01G478200 chr7B 97.826 92 1 1 1782 1873 412543671 412543761 1.300000e-34 158.0
18 TraesCS1B01G478200 chr5A 95.918 98 2 2 1777 1873 696989247 696989151 1.300000e-34 158.0
19 TraesCS1B01G478200 chr5A 96.875 64 1 1 1671 1734 568683208 568683270 4.770000e-19 106.0
20 TraesCS1B01G478200 chr2A 95.833 96 4 0 1786 1881 20821164 20821259 4.670000e-34 156.0
21 TraesCS1B01G478200 chr2A 93.204 103 4 3 1780 1880 498195005 498194904 7.820000e-32 148.0
22 TraesCS1B01G478200 chr2A 100.000 46 0 0 1631 1676 217354797 217354752 6.220000e-13 86.1
23 TraesCS1B01G478200 chr2A 96.970 33 1 0 2984 3016 15854138 15854106 4.870000e-04 56.5
24 TraesCS1B01G478200 chrUn 95.833 96 3 1 1786 1880 132121235 132121140 1.680000e-33 154.0
25 TraesCS1B01G478200 chrUn 100.000 30 0 0 2984 3013 387380022 387380051 4.870000e-04 56.5
26 TraesCS1B01G478200 chr6B 95.833 96 3 1 1782 1876 565420961 565421056 1.680000e-33 154.0
27 TraesCS1B01G478200 chr6B 100.000 31 0 0 2984 3014 598771660 598771690 1.360000e-04 58.4
28 TraesCS1B01G478200 chr6B 100.000 30 0 0 2985 3014 598771655 598771684 4.870000e-04 56.5
29 TraesCS1B01G478200 chr3B 94.898 98 4 1 1784 1880 762449848 762449751 6.040000e-33 152.0
30 TraesCS1B01G478200 chr3D 91.667 108 6 2 1785 1890 95244020 95243914 2.810000e-31 147.0
31 TraesCS1B01G478200 chr5B 96.875 64 1 1 1671 1734 2558738 2558800 4.770000e-19 106.0
32 TraesCS1B01G478200 chr5B 96.825 63 0 2 1671 1733 283103748 283103808 1.720000e-18 104.0
33 TraesCS1B01G478200 chr5B 100.000 46 0 0 1631 1676 604794232 604794187 6.220000e-13 86.1
34 TraesCS1B01G478200 chr5D 96.825 63 0 2 1672 1734 232607300 232607360 1.720000e-18 104.0
35 TraesCS1B01G478200 chr5D 97.917 48 1 0 1629 1676 497014428 497014475 2.240000e-12 84.2
36 TraesCS1B01G478200 chr5D 100.000 32 0 0 2984 3015 431146168 431146199 3.770000e-05 60.2
37 TraesCS1B01G478200 chr4A 95.312 64 1 2 1671 1734 16174281 16174342 2.220000e-17 100.0
38 TraesCS1B01G478200 chr4A 92.982 57 3 1 1619 1674 463545737 463545681 8.040000e-12 82.4
39 TraesCS1B01G478200 chr2B 95.312 64 2 1 1671 1734 101231051 101231113 2.220000e-17 100.0
40 TraesCS1B01G478200 chr2B 98.039 51 0 1 1626 1676 548118648 548118697 1.730000e-13 87.9
41 TraesCS1B01G478200 chr6A 95.312 64 0 3 1671 1734 13077588 13077648 7.990000e-17 99.0
42 TraesCS1B01G478200 chr6A 100.000 32 0 0 2984 3015 614847677 614847646 3.770000e-05 60.2
43 TraesCS1B01G478200 chr4D 96.875 32 1 0 2984 3015 311958082 311958113 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G478200 chr1B 686754646 686758141 3495 False 6457.00 6457 100.0000 1 3496 1 chr1B.!!$F1 3495
1 TraesCS1B01G478200 chr1D 493709601 493713425 3824 False 776.25 2069 86.1165 1 3496 4 chr1D.!!$F2 3495
2 TraesCS1B01G478200 chr1A 591953159 591956936 3777 False 581.80 1074 88.4312 1 3496 5 chr1A.!!$F2 3495

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 1019 0.033504 GCCAGAAAGGAGACACACGA 59.966 55.0 0.00 0.0 41.22 4.35 F
951 1160 0.040692 TCTATTCGATTCGACCGCCG 60.041 55.0 8.55 0.0 34.89 6.46 F
1602 2143 0.250513 CCTACCTCTGCTTCACCCAC 59.749 60.0 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2999 0.025767 AGGGAGGGAGGGAGGGTATA 60.026 60.0 0.0 0.0 0.00 1.47 R
2184 3006 0.326618 GATTGACAGGGAGGGAGGGA 60.327 60.0 0.0 0.0 0.00 4.20 R
3279 4188 0.598065 GCTTCTTCGTGGGCAACAAT 59.402 50.0 0.0 0.0 39.74 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.751927 CCTGCAGGCAGATGGGAAC 60.752 63.158 22.33 0.00 46.30 3.62
76 77 1.302285 CTGCAGGCAGATGGGAACT 59.698 57.895 16.02 0.00 46.30 3.01
77 78 0.747283 CTGCAGGCAGATGGGAACTC 60.747 60.000 16.02 0.00 46.30 3.01
78 79 1.300963 GCAGGCAGATGGGAACTCA 59.699 57.895 0.00 0.00 0.00 3.41
80 81 0.907486 CAGGCAGATGGGAACTCAGA 59.093 55.000 0.00 0.00 0.00 3.27
81 82 1.489649 CAGGCAGATGGGAACTCAGAT 59.510 52.381 0.00 0.00 0.00 2.90
82 83 2.092538 CAGGCAGATGGGAACTCAGATT 60.093 50.000 0.00 0.00 0.00 2.40
83 84 2.092538 AGGCAGATGGGAACTCAGATTG 60.093 50.000 0.00 0.00 0.00 2.67
84 85 2.295885 GCAGATGGGAACTCAGATTGG 58.704 52.381 0.00 0.00 0.00 3.16
85 86 2.295885 CAGATGGGAACTCAGATTGGC 58.704 52.381 0.00 0.00 0.00 4.52
86 87 1.918262 AGATGGGAACTCAGATTGGCA 59.082 47.619 0.00 0.00 0.00 4.92
110 157 4.164796 TCCATCATTCCTTGCTACTGACAT 59.835 41.667 0.00 0.00 0.00 3.06
114 161 5.181009 TCATTCCTTGCTACTGACATGAAG 58.819 41.667 0.00 0.00 0.00 3.02
115 162 2.977914 TCCTTGCTACTGACATGAAGC 58.022 47.619 0.00 0.83 35.51 3.86
125 172 0.096628 GACATGAAGCAAGCAGAGCG 59.903 55.000 0.00 0.00 37.01 5.03
144 191 1.736612 GGAGCAGAAAGAGAAGCAGG 58.263 55.000 0.00 0.00 0.00 4.85
147 194 1.977129 AGCAGAAAGAGAAGCAGGAGT 59.023 47.619 0.00 0.00 0.00 3.85
179 247 3.484407 GATGGAAGTAGCGAGGTACCTA 58.516 50.000 16.29 0.00 0.00 3.08
180 248 2.648059 TGGAAGTAGCGAGGTACCTAC 58.352 52.381 16.29 9.59 35.33 3.18
181 249 1.952990 GGAAGTAGCGAGGTACCTACC 59.047 57.143 16.29 8.85 46.82 3.18
200 268 1.978712 CTGCGATTGTGGCTGAGCAG 61.979 60.000 6.82 0.80 44.51 4.24
291 359 6.205270 GGTGGCTGTCAAATCAAATCAAATTT 59.795 34.615 0.00 0.00 0.00 1.82
316 399 9.686683 TTTTAATTTGAGAGAAGGAAGGATAGG 57.313 33.333 0.00 0.00 0.00 2.57
317 400 8.624019 TTAATTTGAGAGAAGGAAGGATAGGA 57.376 34.615 0.00 0.00 0.00 2.94
318 401 7.516450 AATTTGAGAGAAGGAAGGATAGGAA 57.484 36.000 0.00 0.00 0.00 3.36
319 402 6.552445 TTTGAGAGAAGGAAGGATAGGAAG 57.448 41.667 0.00 0.00 0.00 3.46
320 403 5.473849 TGAGAGAAGGAAGGATAGGAAGA 57.526 43.478 0.00 0.00 0.00 2.87
426 554 1.376466 GGAAGCTTGTCCTCCTGCA 59.624 57.895 2.10 0.00 34.56 4.41
427 555 0.250901 GGAAGCTTGTCCTCCTGCAA 60.251 55.000 2.10 0.00 34.56 4.08
430 558 3.347216 GAAGCTTGTCCTCCTGCAATTA 58.653 45.455 2.10 0.00 0.00 1.40
431 559 2.996631 AGCTTGTCCTCCTGCAATTAG 58.003 47.619 0.00 0.00 0.00 1.73
432 560 1.403323 GCTTGTCCTCCTGCAATTAGC 59.597 52.381 0.00 0.00 45.96 3.09
444 572 3.984508 GCAATTAGCATCTGCATCTGT 57.015 42.857 4.79 0.00 45.16 3.41
447 575 4.503007 GCAATTAGCATCTGCATCTGTTTG 59.497 41.667 4.79 1.53 45.16 2.93
448 576 5.677852 GCAATTAGCATCTGCATCTGTTTGA 60.678 40.000 4.79 0.00 45.16 2.69
449 577 5.752892 ATTAGCATCTGCATCTGTTTGAG 57.247 39.130 4.79 0.00 45.16 3.02
451 579 3.682696 AGCATCTGCATCTGTTTGAGAA 58.317 40.909 4.79 0.00 45.16 2.87
452 580 4.270834 AGCATCTGCATCTGTTTGAGAAT 58.729 39.130 4.79 0.00 45.16 2.40
453 581 4.335874 AGCATCTGCATCTGTTTGAGAATC 59.664 41.667 4.79 0.00 45.16 2.52
454 582 4.095932 GCATCTGCATCTGTTTGAGAATCA 59.904 41.667 0.00 0.00 42.34 2.57
478 610 8.265055 TCAAGGAAGAAGTAGTGAAAAGAAGAA 58.735 33.333 0.00 0.00 0.00 2.52
479 611 8.555361 CAAGGAAGAAGTAGTGAAAAGAAGAAG 58.445 37.037 0.00 0.00 0.00 2.85
480 612 8.024145 AGGAAGAAGTAGTGAAAAGAAGAAGA 57.976 34.615 0.00 0.00 0.00 2.87
484 616 9.892130 AAGAAGTAGTGAAAAGAAGAAGAAGAA 57.108 29.630 0.00 0.00 0.00 2.52
485 617 9.541143 AGAAGTAGTGAAAAGAAGAAGAAGAAG 57.459 33.333 0.00 0.00 0.00 2.85
518 661 3.804873 AGAAGAAGAAGAAGACGTTGTGC 59.195 43.478 0.00 0.00 0.00 4.57
644 787 4.099170 CTGCTGCTGCTGCCGTTC 62.099 66.667 25.44 2.06 40.48 3.95
669 812 4.933064 CGGCGGCGTCCATCTCTC 62.933 72.222 24.74 0.00 0.00 3.20
670 813 4.593864 GGCGGCGTCCATCTCTCC 62.594 72.222 9.37 0.00 0.00 3.71
671 814 4.593864 GCGGCGTCCATCTCTCCC 62.594 72.222 9.37 0.00 0.00 4.30
680 824 2.443255 GTCCATCTCTCCCTCTCTCTCT 59.557 54.545 0.00 0.00 0.00 3.10
688 832 5.714806 TCTCTCCCTCTCTCTCTTTTTCTTC 59.285 44.000 0.00 0.00 0.00 2.87
692 836 5.480073 TCCCTCTCTCTCTTTTTCTTCTCTG 59.520 44.000 0.00 0.00 0.00 3.35
693 837 5.337491 CCCTCTCTCTCTTTTTCTTCTCTGG 60.337 48.000 0.00 0.00 0.00 3.86
695 839 6.239572 CCTCTCTCTCTTTTTCTTCTCTGGTT 60.240 42.308 0.00 0.00 0.00 3.67
700 865 6.423182 TCTCTTTTTCTTCTCTGGTTTGGAA 58.577 36.000 0.00 0.00 0.00 3.53
737 910 1.686110 GCGGAGGAGGAGGGAAAGA 60.686 63.158 0.00 0.00 0.00 2.52
738 911 1.681486 GCGGAGGAGGAGGGAAAGAG 61.681 65.000 0.00 0.00 0.00 2.85
742 915 2.666317 GAGGAGGAGGGAAAGAGAGAG 58.334 57.143 0.00 0.00 0.00 3.20
744 917 1.691163 GGAGGAGGGAAAGAGAGAGGG 60.691 61.905 0.00 0.00 0.00 4.30
745 918 0.326143 AGGAGGGAAAGAGAGAGGGC 60.326 60.000 0.00 0.00 0.00 5.19
747 920 1.681486 GAGGGAAAGAGAGAGGGCGG 61.681 65.000 0.00 0.00 0.00 6.13
775 958 4.636435 CTGTTTGGGCCGGGTCGT 62.636 66.667 2.18 0.00 0.00 4.34
776 959 4.629523 TGTTTGGGCCGGGTCGTC 62.630 66.667 2.18 0.00 0.00 4.20
801 994 3.678072 TCGCCGCTCATAATAATAACAGC 59.322 43.478 0.00 0.00 0.00 4.40
804 997 4.142816 GCCGCTCATAATAATAACAGCAGG 60.143 45.833 0.00 0.00 0.00 4.85
805 998 4.142816 CCGCTCATAATAATAACAGCAGGC 60.143 45.833 0.00 0.00 0.00 4.85
806 999 4.452114 CGCTCATAATAATAACAGCAGGCA 59.548 41.667 0.00 0.00 0.00 4.75
807 1000 5.390251 CGCTCATAATAATAACAGCAGGCAG 60.390 44.000 0.00 0.00 0.00 4.85
817 1010 2.034687 GCAGGCAGCCAGAAAGGA 59.965 61.111 15.80 0.00 41.22 3.36
818 1011 2.045131 GCAGGCAGCCAGAAAGGAG 61.045 63.158 15.80 0.00 41.22 3.69
819 1012 1.681666 CAGGCAGCCAGAAAGGAGA 59.318 57.895 15.80 0.00 41.22 3.71
820 1013 0.676151 CAGGCAGCCAGAAAGGAGAC 60.676 60.000 15.80 0.00 41.22 3.36
821 1014 1.130054 AGGCAGCCAGAAAGGAGACA 61.130 55.000 15.80 0.00 41.22 3.41
822 1015 0.957888 GGCAGCCAGAAAGGAGACAC 60.958 60.000 6.55 0.00 41.22 3.67
823 1016 0.250467 GCAGCCAGAAAGGAGACACA 60.250 55.000 0.00 0.00 41.22 3.72
824 1017 1.517242 CAGCCAGAAAGGAGACACAC 58.483 55.000 0.00 0.00 41.22 3.82
825 1018 0.034059 AGCCAGAAAGGAGACACACG 59.966 55.000 0.00 0.00 41.22 4.49
826 1019 0.033504 GCCAGAAAGGAGACACACGA 59.966 55.000 0.00 0.00 41.22 4.35
827 1020 1.784525 CCAGAAAGGAGACACACGAC 58.215 55.000 0.00 0.00 41.22 4.34
828 1021 1.409412 CAGAAAGGAGACACACGACG 58.591 55.000 0.00 0.00 0.00 5.12
834 1027 3.916392 GAGACACACGACGGCCCAG 62.916 68.421 0.00 0.00 0.00 4.45
850 1043 3.511610 AGCCCAGCCCACCAAGTT 61.512 61.111 0.00 0.00 0.00 2.66
863 1056 5.626809 GCCCACCAAGTTTCTTTCTTTCTTT 60.627 40.000 0.00 0.00 0.00 2.52
864 1057 6.042777 CCCACCAAGTTTCTTTCTTTCTTTC 58.957 40.000 0.00 0.00 0.00 2.62
865 1058 6.127338 CCCACCAAGTTTCTTTCTTTCTTTCT 60.127 38.462 0.00 0.00 0.00 2.52
866 1059 7.323420 CCACCAAGTTTCTTTCTTTCTTTCTT 58.677 34.615 0.00 0.00 0.00 2.52
867 1060 7.819415 CCACCAAGTTTCTTTCTTTCTTTCTTT 59.181 33.333 0.00 0.00 0.00 2.52
868 1061 8.864024 CACCAAGTTTCTTTCTTTCTTTCTTTC 58.136 33.333 0.00 0.00 0.00 2.62
869 1062 8.807118 ACCAAGTTTCTTTCTTTCTTTCTTTCT 58.193 29.630 0.00 0.00 0.00 2.52
870 1063 9.645059 CCAAGTTTCTTTCTTTCTTTCTTTCTT 57.355 29.630 0.00 0.00 0.00 2.52
879 1072 8.986477 TTCTTTCTTTCTTTCTTTCTTGTTGG 57.014 30.769 0.00 0.00 0.00 3.77
880 1073 8.122472 TCTTTCTTTCTTTCTTTCTTGTTGGT 57.878 30.769 0.00 0.00 0.00 3.67
881 1074 8.244113 TCTTTCTTTCTTTCTTTCTTGTTGGTC 58.756 33.333 0.00 0.00 0.00 4.02
882 1075 7.703058 TTCTTTCTTTCTTTCTTGTTGGTCT 57.297 32.000 0.00 0.00 0.00 3.85
883 1076 7.088589 TCTTTCTTTCTTTCTTGTTGGTCTG 57.911 36.000 0.00 0.00 0.00 3.51
884 1077 5.835113 TTCTTTCTTTCTTGTTGGTCTGG 57.165 39.130 0.00 0.00 0.00 3.86
885 1078 4.855340 TCTTTCTTTCTTGTTGGTCTGGT 58.145 39.130 0.00 0.00 0.00 4.00
886 1079 4.881850 TCTTTCTTTCTTGTTGGTCTGGTC 59.118 41.667 0.00 0.00 0.00 4.02
889 1082 3.199946 TCTTTCTTGTTGGTCTGGTCTGT 59.800 43.478 0.00 0.00 0.00 3.41
891 1084 2.917933 TCTTGTTGGTCTGGTCTGTTG 58.082 47.619 0.00 0.00 0.00 3.33
897 1090 1.072173 TGGTCTGGTCTGTTGTGATGG 59.928 52.381 0.00 0.00 0.00 3.51
901 1094 2.300152 TCTGGTCTGTTGTGATGGAGTC 59.700 50.000 0.00 0.00 0.00 3.36
904 1097 3.070018 GGTCTGTTGTGATGGAGTCAAG 58.930 50.000 0.00 0.00 38.90 3.02
948 1157 3.620929 TTCCTCTATTCGATTCGACCG 57.379 47.619 8.55 0.38 34.89 4.79
950 1159 1.666311 CCTCTATTCGATTCGACCGCC 60.666 57.143 8.55 0.00 34.89 6.13
951 1160 0.040692 TCTATTCGATTCGACCGCCG 60.041 55.000 8.55 0.00 34.89 6.46
989 1234 1.150536 CCGAGGAGGAGAGGAGAGG 59.849 68.421 0.00 0.00 45.00 3.69
992 1237 1.518367 GAGGAGGAGAGGAGAGGAGA 58.482 60.000 0.00 0.00 0.00 3.71
1045 1290 4.477975 CCCTCGTCGACCGTGAGC 62.478 72.222 10.58 0.00 37.94 4.26
1052 1297 3.382832 CGACCGTGAGCCTCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
1053 1298 2.579738 GACCGTGAGCCTCCCTTC 59.420 66.667 0.00 0.00 0.00 3.46
1072 1317 1.282653 CCCCTTCCTTCCTTCCTCCC 61.283 65.000 0.00 0.00 0.00 4.30
1073 1318 0.253394 CCCTTCCTTCCTTCCTCCCT 60.253 60.000 0.00 0.00 0.00 4.20
1078 1323 0.642710 CCTTCCTTCCTCCCTCCCTA 59.357 60.000 0.00 0.00 0.00 3.53
1080 1325 1.008449 CTTCCTTCCTCCCTCCCTACA 59.992 57.143 0.00 0.00 0.00 2.74
1082 1327 0.691413 CCTTCCTCCCTCCCTACACC 60.691 65.000 0.00 0.00 0.00 4.16
1083 1328 0.340208 CTTCCTCCCTCCCTACACCT 59.660 60.000 0.00 0.00 0.00 4.00
1086 1362 0.470268 CCTCCCTCCCTACACCTAGC 60.470 65.000 0.00 0.00 0.00 3.42
1098 1374 2.498167 ACACCTAGCAGCTTGTTTCAG 58.502 47.619 0.00 0.00 0.00 3.02
1103 1379 3.565482 CCTAGCAGCTTGTTTCAGTTTCA 59.435 43.478 0.00 0.00 0.00 2.69
1104 1380 4.036734 CCTAGCAGCTTGTTTCAGTTTCAA 59.963 41.667 0.00 0.00 0.00 2.69
1106 1382 4.614946 AGCAGCTTGTTTCAGTTTCAATC 58.385 39.130 0.00 0.00 0.00 2.67
1107 1383 4.340381 AGCAGCTTGTTTCAGTTTCAATCT 59.660 37.500 0.00 0.00 0.00 2.40
1108 1384 4.678742 GCAGCTTGTTTCAGTTTCAATCTC 59.321 41.667 0.00 0.00 0.00 2.75
1109 1385 5.734220 GCAGCTTGTTTCAGTTTCAATCTCA 60.734 40.000 0.00 0.00 0.00 3.27
1110 1386 5.684626 CAGCTTGTTTCAGTTTCAATCTCAC 59.315 40.000 0.00 0.00 0.00 3.51
1111 1387 4.978580 GCTTGTTTCAGTTTCAATCTCACC 59.021 41.667 0.00 0.00 0.00 4.02
1112 1388 4.811555 TGTTTCAGTTTCAATCTCACCG 57.188 40.909 0.00 0.00 0.00 4.94
1114 1390 4.272504 TGTTTCAGTTTCAATCTCACCGTC 59.727 41.667 0.00 0.00 0.00 4.79
1115 1391 4.336889 TTCAGTTTCAATCTCACCGTCT 57.663 40.909 0.00 0.00 0.00 4.18
1116 1392 4.336889 TCAGTTTCAATCTCACCGTCTT 57.663 40.909 0.00 0.00 0.00 3.01
1119 1412 4.752101 CAGTTTCAATCTCACCGTCTTTCT 59.248 41.667 0.00 0.00 0.00 2.52
1125 1418 5.466728 TCAATCTCACCGTCTTTCTTTCTTG 59.533 40.000 0.00 0.00 0.00 3.02
1245 1572 5.656416 TCTTTCTTTCTTTCTTTCTTGGCCA 59.344 36.000 0.00 0.00 0.00 5.36
1246 1573 6.324770 TCTTTCTTTCTTTCTTTCTTGGCCAT 59.675 34.615 6.09 0.00 0.00 4.40
1261 1588 1.716826 GCCATTGCTCTGCTCTGCTC 61.717 60.000 0.00 0.00 33.53 4.26
1275 1602 6.093219 TCTGCTCTGCTCTCATAACAAAAATC 59.907 38.462 0.00 0.00 0.00 2.17
1279 1606 7.431668 GCTCTGCTCTCATAACAAAAATCAATC 59.568 37.037 0.00 0.00 0.00 2.67
1372 1755 7.124750 GGTCTACTCCACTAAGGTAATACCAAA 59.875 40.741 12.54 0.00 41.95 3.28
1378 1761 5.933463 CCACTAAGGTAATACCAAAACGTCA 59.067 40.000 12.54 0.00 41.95 4.35
1379 1762 6.091713 CCACTAAGGTAATACCAAAACGTCAG 59.908 42.308 12.54 0.00 41.95 3.51
1380 1763 6.647895 CACTAAGGTAATACCAAAACGTCAGT 59.352 38.462 12.54 0.33 41.95 3.41
1381 1764 6.870439 ACTAAGGTAATACCAAAACGTCAGTC 59.130 38.462 12.54 0.00 41.95 3.51
1383 1766 5.801380 AGGTAATACCAAAACGTCAGTCAT 58.199 37.500 12.54 0.00 41.95 3.06
1384 1767 5.873164 AGGTAATACCAAAACGTCAGTCATC 59.127 40.000 12.54 0.00 41.95 2.92
1385 1768 5.640357 GGTAATACCAAAACGTCAGTCATCA 59.360 40.000 4.24 0.00 38.42 3.07
1386 1769 6.315393 GGTAATACCAAAACGTCAGTCATCAT 59.685 38.462 4.24 0.00 38.42 2.45
1390 1773 9.778741 AATACCAAAACGTCAGTCATCATATAT 57.221 29.630 0.00 0.00 0.00 0.86
1462 1849 2.266070 TGCATTGCACTACCCTTGC 58.734 52.632 7.38 0.00 40.63 4.01
1463 1850 1.250154 TGCATTGCACTACCCTTGCC 61.250 55.000 7.38 0.00 39.39 4.52
1465 1852 1.549203 CATTGCACTACCCTTGCCTT 58.451 50.000 0.00 0.00 39.39 4.35
1495 1882 8.375506 TGACACAAACAATTCTAGTCTAGGATT 58.624 33.333 7.51 7.51 34.29 3.01
1536 2040 5.860941 TTTATTGCCTTCAAGGACACAAA 57.139 34.783 7.98 5.39 37.67 2.83
1579 2120 4.290622 AACCTGCCTGCCCCTGTG 62.291 66.667 0.00 0.00 0.00 3.66
1582 2123 2.270205 CTGCCTGCCCCTGTGTAG 59.730 66.667 0.00 0.00 0.00 2.74
1586 2127 1.689233 CCTGCCCCTGTGTAGCCTA 60.689 63.158 0.00 0.00 0.00 3.93
1602 2143 0.250513 CCTACCTCTGCTTCACCCAC 59.749 60.000 0.00 0.00 0.00 4.61
1604 2145 1.198759 TACCTCTGCTTCACCCACCC 61.199 60.000 0.00 0.00 0.00 4.61
1605 2146 2.352805 CTCTGCTTCACCCACCCC 59.647 66.667 0.00 0.00 0.00 4.95
1607 2148 1.774217 TCTGCTTCACCCACCCCTT 60.774 57.895 0.00 0.00 0.00 3.95
1608 2149 0.474854 TCTGCTTCACCCACCCCTTA 60.475 55.000 0.00 0.00 0.00 2.69
1622 2163 7.347222 CACCCACCCCTTATTAGCTCATATATA 59.653 40.741 0.00 0.00 0.00 0.86
1624 2165 8.378565 CCCACCCCTTATTAGCTCATATATATG 58.621 40.741 15.47 15.47 35.04 1.78
1627 2168 9.230477 ACCCCTTATTAGCTCATATATATGCTT 57.770 33.333 16.59 7.91 37.02 3.91
1639 2180 9.717942 CTCATATATATGCTTATTAAGGCCTCC 57.282 37.037 16.59 0.00 33.76 4.30
1640 2181 9.452517 TCATATATATGCTTATTAAGGCCTCCT 57.547 33.333 16.59 0.00 33.76 3.69
1643 2184 8.814038 ATATATGCTTATTAAGGCCTCCTTTG 57.186 34.615 5.23 0.00 41.69 2.77
1644 2185 3.631250 TGCTTATTAAGGCCTCCTTTGG 58.369 45.455 5.23 0.00 41.69 3.28
1645 2186 3.011257 TGCTTATTAAGGCCTCCTTTGGT 59.989 43.478 5.23 0.00 41.69 3.67
1646 2187 4.023980 GCTTATTAAGGCCTCCTTTGGTT 58.976 43.478 5.23 0.00 41.69 3.67
1647 2188 4.098044 GCTTATTAAGGCCTCCTTTGGTTC 59.902 45.833 5.23 0.00 41.69 3.62
1649 2190 3.825908 TTAAGGCCTCCTTTGGTTCAT 57.174 42.857 5.23 0.00 41.69 2.57
1651 2192 3.372440 AAGGCCTCCTTTGGTTCATAG 57.628 47.619 5.23 0.00 41.69 2.23
1652 2193 1.566231 AGGCCTCCTTTGGTTCATAGG 59.434 52.381 0.00 0.00 34.61 2.57
1653 2194 1.410224 GGCCTCCTTTGGTTCATAGGG 60.410 57.143 0.00 0.00 34.20 3.53
1654 2195 1.285078 GCCTCCTTTGGTTCATAGGGT 59.715 52.381 4.94 0.00 34.20 4.34
1655 2196 2.508300 GCCTCCTTTGGTTCATAGGGTA 59.492 50.000 4.94 0.00 34.20 3.69
1657 2198 3.136626 CCTCCTTTGGTTCATAGGGTAGG 59.863 52.174 4.94 2.50 34.20 3.18
1658 2199 4.037927 CTCCTTTGGTTCATAGGGTAGGA 58.962 47.826 4.94 0.00 34.20 2.94
1659 2200 4.440808 TCCTTTGGTTCATAGGGTAGGAA 58.559 43.478 4.94 0.00 34.20 3.36
1660 2201 4.853276 TCCTTTGGTTCATAGGGTAGGAAA 59.147 41.667 4.94 0.00 34.20 3.13
1661 2202 5.313772 TCCTTTGGTTCATAGGGTAGGAAAA 59.686 40.000 4.94 0.00 34.20 2.29
1663 2204 6.321435 CCTTTGGTTCATAGGGTAGGAAAATC 59.679 42.308 0.00 0.00 30.68 2.17
1664 2205 6.395780 TTGGTTCATAGGGTAGGAAAATCA 57.604 37.500 0.00 0.00 29.56 2.57
1665 2206 6.590656 TGGTTCATAGGGTAGGAAAATCAT 57.409 37.500 0.00 0.00 29.56 2.45
1667 2208 7.745717 TGGTTCATAGGGTAGGAAAATCATAG 58.254 38.462 0.00 0.00 29.56 2.23
1668 2209 7.168905 GGTTCATAGGGTAGGAAAATCATAGG 58.831 42.308 0.00 0.00 29.56 2.57
1669 2210 7.017254 GGTTCATAGGGTAGGAAAATCATAGGA 59.983 40.741 0.00 0.00 29.56 2.94
1671 2212 8.757307 TCATAGGGTAGGAAAATCATAGGAAT 57.243 34.615 0.00 0.00 0.00 3.01
1672 2213 9.852784 TCATAGGGTAGGAAAATCATAGGAATA 57.147 33.333 0.00 0.00 0.00 1.75
1674 2215 7.575499 AGGGTAGGAAAATCATAGGAATAGG 57.425 40.000 0.00 0.00 0.00 2.57
1675 2216 7.321530 AGGGTAGGAAAATCATAGGAATAGGA 58.678 38.462 0.00 0.00 0.00 2.94
1676 2217 7.970061 AGGGTAGGAAAATCATAGGAATAGGAT 59.030 37.037 0.00 0.00 0.00 3.24
1677 2218 8.615705 GGGTAGGAAAATCATAGGAATAGGATT 58.384 37.037 0.00 0.00 32.61 3.01
1704 2245 7.504926 TTTTTCCCATTAGAGTCTAGGCTAA 57.495 36.000 0.00 0.01 0.00 3.09
1705 2246 7.691993 TTTTCCCATTAGAGTCTAGGCTAAT 57.308 36.000 0.00 2.49 37.70 1.73
1706 2247 6.672266 TTCCCATTAGAGTCTAGGCTAATG 57.328 41.667 21.39 21.39 46.83 1.90
1707 2248 5.716979 TCCCATTAGAGTCTAGGCTAATGT 58.283 41.667 23.73 6.67 46.29 2.71
1716 2257 8.966069 AGAGTCTAGGCTAATGTTTATTTTCC 57.034 34.615 0.00 0.00 0.00 3.13
1717 2258 8.773216 AGAGTCTAGGCTAATGTTTATTTTCCT 58.227 33.333 0.00 0.00 33.86 3.36
1732 2517 8.966868 GTTTATTTTCCTATGAAATGTGGAGGA 58.033 33.333 0.00 0.00 40.08 3.71
1742 2527 6.813293 TGAAATGTGGAGGATCTTCTCATA 57.187 37.500 4.68 0.70 35.58 2.15
1758 2543 7.592736 TCTTCTCATATACTAGGTCCAAGGAA 58.407 38.462 0.00 0.00 0.00 3.36
1782 2567 5.622346 ACTCCACTTTTCTCTTCTCTTGT 57.378 39.130 0.00 0.00 0.00 3.16
1784 2569 7.309770 ACTCCACTTTTCTCTTCTCTTGTAT 57.690 36.000 0.00 0.00 0.00 2.29
1785 2570 8.423906 ACTCCACTTTTCTCTTCTCTTGTATA 57.576 34.615 0.00 0.00 0.00 1.47
1786 2571 8.871125 ACTCCACTTTTCTCTTCTCTTGTATAA 58.129 33.333 0.00 0.00 0.00 0.98
1788 2573 8.871125 TCCACTTTTCTCTTCTCTTGTATAAGT 58.129 33.333 0.00 0.00 35.38 2.24
1794 2579 8.522542 TTCTCTTCTCTTGTATAAGTACTCCC 57.477 38.462 0.00 0.00 35.38 4.30
1795 2580 7.874252 TCTCTTCTCTTGTATAAGTACTCCCT 58.126 38.462 0.00 0.00 35.38 4.20
1796 2581 7.994334 TCTCTTCTCTTGTATAAGTACTCCCTC 59.006 40.741 0.00 0.00 35.38 4.30
1797 2582 7.061688 TCTTCTCTTGTATAAGTACTCCCTCC 58.938 42.308 0.00 0.00 35.38 4.30
1798 2583 5.374921 TCTCTTGTATAAGTACTCCCTCCG 58.625 45.833 0.00 0.00 35.38 4.63
1799 2584 5.104193 TCTCTTGTATAAGTACTCCCTCCGT 60.104 44.000 0.00 0.00 35.38 4.69
1800 2585 6.100279 TCTCTTGTATAAGTACTCCCTCCGTA 59.900 42.308 0.00 0.00 35.38 4.02
1801 2586 6.662755 TCTTGTATAAGTACTCCCTCCGTAA 58.337 40.000 0.00 0.00 35.38 3.18
1802 2587 7.118723 TCTTGTATAAGTACTCCCTCCGTAAA 58.881 38.462 0.00 0.00 35.38 2.01
1803 2588 6.699575 TGTATAAGTACTCCCTCCGTAAAC 57.300 41.667 0.00 0.00 0.00 2.01
1804 2589 6.426587 TGTATAAGTACTCCCTCCGTAAACT 58.573 40.000 0.00 0.00 0.00 2.66
1805 2590 7.573710 TGTATAAGTACTCCCTCCGTAAACTA 58.426 38.462 0.00 0.00 0.00 2.24
1806 2591 8.052748 TGTATAAGTACTCCCTCCGTAAACTAA 58.947 37.037 0.00 0.00 0.00 2.24
1807 2592 9.072375 GTATAAGTACTCCCTCCGTAAACTAAT 57.928 37.037 0.00 0.00 0.00 1.73
1809 2594 9.819754 ATAAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
1811 2596 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
1812 2597 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
1813 2598 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
1814 2599 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1815 2600 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1816 2601 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
1817 2602 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
1818 2603 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
1819 2604 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
1923 2710 3.814625 TGTTCACAAGGTGTCATGCTAA 58.185 40.909 0.00 0.00 34.79 3.09
1925 2712 4.216042 TGTTCACAAGGTGTCATGCTAATG 59.784 41.667 0.00 0.00 34.79 1.90
1926 2713 2.749076 TCACAAGGTGTCATGCTAATGC 59.251 45.455 0.00 0.00 35.85 3.56
1968 2761 2.282745 GCTCTGCTGCCCTGGTTT 60.283 61.111 0.00 0.00 0.00 3.27
1969 2762 1.905354 GCTCTGCTGCCCTGGTTTT 60.905 57.895 0.00 0.00 0.00 2.43
1970 2763 0.609131 GCTCTGCTGCCCTGGTTTTA 60.609 55.000 0.00 0.00 0.00 1.52
2009 2803 1.084018 AGCCCCATCCTTTTTCCTCA 58.916 50.000 0.00 0.00 0.00 3.86
2020 2838 3.366374 CCTTTTTCCTCATCCAGTTTCGC 60.366 47.826 0.00 0.00 0.00 4.70
2029 2847 0.944386 TCCAGTTTCGCTGTTTCTGC 59.056 50.000 0.00 0.00 43.55 4.26
2051 2869 5.590259 TGCTAGGCTCCTTTTTGTAATCATC 59.410 40.000 0.00 0.00 0.00 2.92
2052 2870 5.590259 GCTAGGCTCCTTTTTGTAATCATCA 59.410 40.000 0.00 0.00 0.00 3.07
2053 2871 6.264067 GCTAGGCTCCTTTTTGTAATCATCAT 59.736 38.462 0.00 0.00 0.00 2.45
2054 2872 7.445402 GCTAGGCTCCTTTTTGTAATCATCATA 59.555 37.037 0.00 0.00 0.00 2.15
2106 2924 5.362556 GACTTGCTGTCTTTCTTGCATAA 57.637 39.130 0.00 0.00 42.21 1.90
2107 2925 5.762045 GACTTGCTGTCTTTCTTGCATAAA 58.238 37.500 0.00 0.00 42.21 1.40
2108 2926 6.336842 ACTTGCTGTCTTTCTTGCATAAAT 57.663 33.333 0.00 0.00 35.27 1.40
2109 2927 7.452880 ACTTGCTGTCTTTCTTGCATAAATA 57.547 32.000 0.00 0.00 35.27 1.40
2110 2928 7.885297 ACTTGCTGTCTTTCTTGCATAAATAA 58.115 30.769 0.00 0.00 35.27 1.40
2111 2929 8.359642 ACTTGCTGTCTTTCTTGCATAAATAAA 58.640 29.630 0.00 0.00 35.27 1.40
2112 2930 9.362539 CTTGCTGTCTTTCTTGCATAAATAAAT 57.637 29.630 0.00 0.00 35.27 1.40
2154 2972 2.918712 AGTTCCTTGGACACTGACTG 57.081 50.000 0.00 0.00 0.00 3.51
2155 2973 2.398588 AGTTCCTTGGACACTGACTGA 58.601 47.619 0.00 0.00 0.00 3.41
2156 2974 2.103263 AGTTCCTTGGACACTGACTGAC 59.897 50.000 0.00 0.00 0.00 3.51
2157 2975 2.088104 TCCTTGGACACTGACTGACT 57.912 50.000 0.00 0.00 0.00 3.41
2176 2998 8.738645 ACTGACTCTTCTTGTTGAGTTTTATT 57.261 30.769 0.00 0.00 42.79 1.40
2177 2999 9.178758 ACTGACTCTTCTTGTTGAGTTTTATTT 57.821 29.630 0.00 0.00 42.79 1.40
2186 3008 9.457436 TCTTGTTGAGTTTTATTTATACCCTCC 57.543 33.333 0.00 0.00 0.00 4.30
2187 3009 8.584063 TTGTTGAGTTTTATTTATACCCTCCC 57.416 34.615 0.00 0.00 0.00 4.30
2188 3010 7.935405 TGTTGAGTTTTATTTATACCCTCCCT 58.065 34.615 0.00 0.00 0.00 4.20
2399 3229 0.098025 AGTTGTTTGTTGACGGCGTG 59.902 50.000 21.19 0.00 0.00 5.34
2805 3651 5.619220 AGTTGACAGCAGAGAAGAGAAATT 58.381 37.500 0.00 0.00 0.00 1.82
2809 3655 2.095532 CAGCAGAGAAGAGAAATTGCCG 59.904 50.000 0.00 0.00 32.21 5.69
2810 3656 2.027745 AGCAGAGAAGAGAAATTGCCGA 60.028 45.455 0.00 0.00 32.21 5.54
2811 3657 2.744202 GCAGAGAAGAGAAATTGCCGAA 59.256 45.455 0.00 0.00 0.00 4.30
2812 3658 3.189287 GCAGAGAAGAGAAATTGCCGAAA 59.811 43.478 0.00 0.00 0.00 3.46
2813 3659 4.142513 GCAGAGAAGAGAAATTGCCGAAAT 60.143 41.667 0.00 0.00 0.00 2.17
2814 3660 5.567552 CAGAGAAGAGAAATTGCCGAAATC 58.432 41.667 0.00 0.00 0.00 2.17
2815 3661 4.331168 AGAGAAGAGAAATTGCCGAAATCG 59.669 41.667 0.00 0.00 39.44 3.34
2829 3675 4.412207 CCGAAATCGTCCAAAGGAAATTC 58.588 43.478 1.79 0.00 37.74 2.17
3102 4011 1.556911 GAGATGAAGAACTGGCCCTGA 59.443 52.381 0.00 0.00 0.00 3.86
3309 4218 1.403972 CGAAGAAGCACTCGCCGTAC 61.404 60.000 0.00 0.00 39.83 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.064463 GGATGCCAATCTGAGTTCCCA 60.064 52.381 0.00 0.00 32.95 4.37
72 73 3.548770 TGATGGATGCCAATCTGAGTTC 58.451 45.455 0.00 0.00 36.95 3.01
75 76 3.506455 GGAATGATGGATGCCAATCTGAG 59.494 47.826 0.00 0.00 36.95 3.35
76 77 3.139584 AGGAATGATGGATGCCAATCTGA 59.860 43.478 0.00 0.00 36.95 3.27
77 78 3.497332 AGGAATGATGGATGCCAATCTG 58.503 45.455 0.00 0.00 36.95 2.90
78 79 3.895656 CAAGGAATGATGGATGCCAATCT 59.104 43.478 0.00 0.00 36.95 2.40
80 81 2.367567 GCAAGGAATGATGGATGCCAAT 59.632 45.455 0.00 0.00 36.95 3.16
81 82 1.758280 GCAAGGAATGATGGATGCCAA 59.242 47.619 0.00 0.00 36.95 4.52
82 83 1.063492 AGCAAGGAATGATGGATGCCA 60.063 47.619 0.00 0.00 38.19 4.92
83 84 1.700955 AGCAAGGAATGATGGATGCC 58.299 50.000 0.00 0.00 34.44 4.40
84 85 3.252701 CAGTAGCAAGGAATGATGGATGC 59.747 47.826 0.00 0.00 0.00 3.91
85 86 4.514441 GTCAGTAGCAAGGAATGATGGATG 59.486 45.833 0.00 0.00 0.00 3.51
86 87 4.164796 TGTCAGTAGCAAGGAATGATGGAT 59.835 41.667 0.00 0.00 0.00 3.41
110 157 1.375140 CTCCGCTCTGCTTGCTTCA 60.375 57.895 0.00 0.00 0.00 3.02
114 161 3.497932 CTGCTCCGCTCTGCTTGC 61.498 66.667 0.00 0.00 0.00 4.01
115 162 0.952497 TTTCTGCTCCGCTCTGCTTG 60.952 55.000 0.00 0.00 0.00 4.01
125 172 1.277557 TCCTGCTTCTCTTTCTGCTCC 59.722 52.381 0.00 0.00 0.00 4.70
133 180 1.558756 CCCATCACTCCTGCTTCTCTT 59.441 52.381 0.00 0.00 0.00 2.85
135 182 1.198713 TCCCATCACTCCTGCTTCTC 58.801 55.000 0.00 0.00 0.00 2.87
144 191 1.438469 TCCATCCCATCCCATCACTC 58.562 55.000 0.00 0.00 0.00 3.51
147 194 1.911454 ACTTCCATCCCATCCCATCA 58.089 50.000 0.00 0.00 0.00 3.07
179 247 1.376424 CTCAGCCACAATCGCAGGT 60.376 57.895 0.00 0.00 0.00 4.00
180 248 2.758089 GCTCAGCCACAATCGCAGG 61.758 63.158 0.00 0.00 0.00 4.85
181 249 1.978712 CTGCTCAGCCACAATCGCAG 61.979 60.000 0.00 0.00 38.86 5.18
182 250 2.032376 TGCTCAGCCACAATCGCA 59.968 55.556 0.00 0.00 0.00 5.10
200 268 4.778143 ATCAGGCCCGTCAACCGC 62.778 66.667 0.00 0.00 34.38 5.68
263 331 1.523154 TTGATTTGACAGCCACCGCC 61.523 55.000 0.00 0.00 34.57 6.13
291 359 9.057911 TCCTATCCTTCCTTCTCTCAAATTAAA 57.942 33.333 0.00 0.00 0.00 1.52
299 378 5.535030 GTCTCTTCCTATCCTTCCTTCTCTC 59.465 48.000 0.00 0.00 0.00 3.20
300 379 5.195756 AGTCTCTTCCTATCCTTCCTTCTCT 59.804 44.000 0.00 0.00 0.00 3.10
313 396 4.042311 AGTCAGTCAGTCAGTCTCTTCCTA 59.958 45.833 0.00 0.00 0.00 2.94
314 397 3.153919 GTCAGTCAGTCAGTCTCTTCCT 58.846 50.000 0.00 0.00 0.00 3.36
315 398 3.057596 CAGTCAGTCAGTCAGTCTCTTCC 60.058 52.174 0.00 0.00 0.00 3.46
316 399 3.818210 TCAGTCAGTCAGTCAGTCTCTTC 59.182 47.826 0.00 0.00 0.00 2.87
317 400 3.568007 GTCAGTCAGTCAGTCAGTCTCTT 59.432 47.826 0.00 0.00 0.00 2.85
318 401 3.146066 GTCAGTCAGTCAGTCAGTCTCT 58.854 50.000 0.00 0.00 0.00 3.10
319 402 2.227865 GGTCAGTCAGTCAGTCAGTCTC 59.772 54.545 0.00 0.00 0.00 3.36
320 403 2.235016 GGTCAGTCAGTCAGTCAGTCT 58.765 52.381 0.00 0.00 0.00 3.24
426 554 5.884232 TCTCAAACAGATGCAGATGCTAATT 59.116 36.000 6.35 0.00 42.66 1.40
427 555 5.434408 TCTCAAACAGATGCAGATGCTAAT 58.566 37.500 6.35 0.00 42.66 1.73
430 558 3.345508 TCTCAAACAGATGCAGATGCT 57.654 42.857 6.35 0.00 42.66 3.79
431 559 4.095932 TGATTCTCAAACAGATGCAGATGC 59.904 41.667 0.00 0.00 42.50 3.91
432 560 5.813080 TGATTCTCAAACAGATGCAGATG 57.187 39.130 0.00 0.00 0.00 2.90
433 561 5.357314 CCTTGATTCTCAAACAGATGCAGAT 59.643 40.000 0.00 0.00 35.73 2.90
435 563 4.698780 TCCTTGATTCTCAAACAGATGCAG 59.301 41.667 0.00 0.00 35.73 4.41
436 564 4.654915 TCCTTGATTCTCAAACAGATGCA 58.345 39.130 0.00 0.00 35.73 3.96
437 565 5.413833 TCTTCCTTGATTCTCAAACAGATGC 59.586 40.000 0.00 0.00 35.73 3.91
438 566 7.174599 ACTTCTTCCTTGATTCTCAAACAGATG 59.825 37.037 0.00 0.00 35.73 2.90
439 567 7.230027 ACTTCTTCCTTGATTCTCAAACAGAT 58.770 34.615 0.00 0.00 35.73 2.90
440 568 6.595682 ACTTCTTCCTTGATTCTCAAACAGA 58.404 36.000 0.00 0.00 35.73 3.41
442 570 7.442364 CACTACTTCTTCCTTGATTCTCAAACA 59.558 37.037 0.00 0.00 35.73 2.83
443 571 7.657761 TCACTACTTCTTCCTTGATTCTCAAAC 59.342 37.037 0.00 0.00 35.73 2.93
444 572 7.735917 TCACTACTTCTTCCTTGATTCTCAAA 58.264 34.615 0.00 0.00 35.73 2.69
447 575 8.608844 TTTTCACTACTTCTTCCTTGATTCTC 57.391 34.615 0.00 0.00 0.00 2.87
448 576 8.432805 TCTTTTCACTACTTCTTCCTTGATTCT 58.567 33.333 0.00 0.00 0.00 2.40
449 577 8.608844 TCTTTTCACTACTTCTTCCTTGATTC 57.391 34.615 0.00 0.00 0.00 2.52
451 579 8.432805 TCTTCTTTTCACTACTTCTTCCTTGAT 58.567 33.333 0.00 0.00 0.00 2.57
452 580 7.792032 TCTTCTTTTCACTACTTCTTCCTTGA 58.208 34.615 0.00 0.00 0.00 3.02
453 581 8.438676 TTCTTCTTTTCACTACTTCTTCCTTG 57.561 34.615 0.00 0.00 0.00 3.61
454 582 8.487028 TCTTCTTCTTTTCACTACTTCTTCCTT 58.513 33.333 0.00 0.00 0.00 3.36
455 583 8.024145 TCTTCTTCTTTTCACTACTTCTTCCT 57.976 34.615 0.00 0.00 0.00 3.36
456 584 8.664211 TTCTTCTTCTTTTCACTACTTCTTCC 57.336 34.615 0.00 0.00 0.00 3.46
457 585 9.535878 TCTTCTTCTTCTTTTCACTACTTCTTC 57.464 33.333 0.00 0.00 0.00 2.87
458 586 9.892130 TTCTTCTTCTTCTTTTCACTACTTCTT 57.108 29.630 0.00 0.00 0.00 2.52
459 587 9.541143 CTTCTTCTTCTTCTTTTCACTACTTCT 57.459 33.333 0.00 0.00 0.00 2.85
462 590 9.541143 CTTCTTCTTCTTCTTCTTTTCACTACT 57.459 33.333 0.00 0.00 0.00 2.57
467 595 9.672673 TTCTTCTTCTTCTTCTTCTTCTTTTCA 57.327 29.630 0.00 0.00 0.00 2.69
478 610 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
479 611 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
480 612 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
484 616 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
485 617 8.978539 GTCTTCTTCTTCTTCTTCTTCTTCTTC 58.021 37.037 0.00 0.00 0.00 2.87
518 661 2.993899 GGACATCGTCAACCAACTACTG 59.006 50.000 0.00 0.00 33.68 2.74
657 800 0.467290 AGAGAGGGAGAGATGGACGC 60.467 60.000 0.00 0.00 0.00 5.19
659 802 2.443255 AGAGAGAGAGGGAGAGATGGAC 59.557 54.545 0.00 0.00 0.00 4.02
660 803 2.787956 AGAGAGAGAGGGAGAGATGGA 58.212 52.381 0.00 0.00 0.00 3.41
661 804 3.600448 AAGAGAGAGAGGGAGAGATGG 57.400 52.381 0.00 0.00 0.00 3.51
662 805 5.658190 AGAAAAAGAGAGAGAGGGAGAGATG 59.342 44.000 0.00 0.00 0.00 2.90
663 806 5.842339 AGAAAAAGAGAGAGAGGGAGAGAT 58.158 41.667 0.00 0.00 0.00 2.75
664 807 5.269554 AGAAAAAGAGAGAGAGGGAGAGA 57.730 43.478 0.00 0.00 0.00 3.10
665 808 5.716703 AGAAGAAAAAGAGAGAGAGGGAGAG 59.283 44.000 0.00 0.00 0.00 3.20
666 809 5.650283 AGAAGAAAAAGAGAGAGAGGGAGA 58.350 41.667 0.00 0.00 0.00 3.71
667 810 5.716703 AGAGAAGAAAAAGAGAGAGAGGGAG 59.283 44.000 0.00 0.00 0.00 4.30
668 811 5.480073 CAGAGAAGAAAAAGAGAGAGAGGGA 59.520 44.000 0.00 0.00 0.00 4.20
669 812 5.337491 CCAGAGAAGAAAAAGAGAGAGAGGG 60.337 48.000 0.00 0.00 0.00 4.30
670 813 5.245977 ACCAGAGAAGAAAAAGAGAGAGAGG 59.754 44.000 0.00 0.00 0.00 3.69
671 814 6.345096 ACCAGAGAAGAAAAAGAGAGAGAG 57.655 41.667 0.00 0.00 0.00 3.20
680 824 4.649218 CCCTTCCAAACCAGAGAAGAAAAA 59.351 41.667 0.00 0.00 39.50 1.94
688 832 0.329596 CCCTCCCTTCCAAACCAGAG 59.670 60.000 0.00 0.00 0.00 3.35
692 836 0.845102 TCTCCCCTCCCTTCCAAACC 60.845 60.000 0.00 0.00 0.00 3.27
693 837 1.004862 CTTCTCCCCTCCCTTCCAAAC 59.995 57.143 0.00 0.00 0.00 2.93
695 839 1.208165 GCTTCTCCCCTCCCTTCCAA 61.208 60.000 0.00 0.00 0.00 3.53
723 896 1.290732 CCTCTCTCTTTCCCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
732 905 1.153469 CAGCCGCCCTCTCTCTTTC 60.153 63.158 0.00 0.00 0.00 2.62
733 906 2.985456 CAGCCGCCCTCTCTCTTT 59.015 61.111 0.00 0.00 0.00 2.52
734 907 3.780173 GCAGCCGCCCTCTCTCTT 61.780 66.667 0.00 0.00 0.00 2.85
737 910 4.775977 AGAGCAGCCGCCCTCTCT 62.776 66.667 5.55 3.72 39.83 3.10
738 911 4.527583 CAGAGCAGCCGCCCTCTC 62.528 72.222 7.92 2.88 39.83 3.20
744 917 4.756458 ACAGAGCAGAGCAGCCGC 62.756 66.667 0.00 0.00 38.99 6.53
745 918 1.670406 AAACAGAGCAGAGCAGCCG 60.670 57.895 0.00 0.00 34.23 5.52
747 920 1.584380 CCCAAACAGAGCAGAGCAGC 61.584 60.000 0.00 0.00 0.00 5.25
778 961 4.434330 GCTGTTATTATTATGAGCGGCGAC 60.434 45.833 12.98 4.01 0.00 5.19
779 962 3.678072 GCTGTTATTATTATGAGCGGCGA 59.322 43.478 12.98 0.00 0.00 5.54
780 963 3.431912 TGCTGTTATTATTATGAGCGGCG 59.568 43.478 0.51 0.51 0.00 6.46
781 964 4.142816 CCTGCTGTTATTATTATGAGCGGC 60.143 45.833 0.00 0.00 32.50 6.53
783 966 4.452114 TGCCTGCTGTTATTATTATGAGCG 59.548 41.667 0.00 0.00 0.00 5.03
784 967 5.618640 GCTGCCTGCTGTTATTATTATGAGC 60.619 44.000 0.00 0.00 38.95 4.26
786 969 4.761739 GGCTGCCTGCTGTTATTATTATGA 59.238 41.667 12.43 0.00 42.39 2.15
801 994 0.676151 GTCTCCTTTCTGGCTGCCTG 60.676 60.000 21.03 19.66 35.26 4.85
804 997 0.250467 TGTGTCTCCTTTCTGGCTGC 60.250 55.000 0.00 0.00 35.26 5.25
805 998 1.517242 GTGTGTCTCCTTTCTGGCTG 58.483 55.000 0.00 0.00 35.26 4.85
806 999 0.034059 CGTGTGTCTCCTTTCTGGCT 59.966 55.000 0.00 0.00 35.26 4.75
807 1000 0.033504 TCGTGTGTCTCCTTTCTGGC 59.966 55.000 0.00 0.00 35.26 4.85
809 1002 1.409412 CGTCGTGTGTCTCCTTTCTG 58.591 55.000 0.00 0.00 0.00 3.02
810 1003 0.314302 CCGTCGTGTGTCTCCTTTCT 59.686 55.000 0.00 0.00 0.00 2.52
811 1004 1.282930 GCCGTCGTGTGTCTCCTTTC 61.283 60.000 0.00 0.00 0.00 2.62
812 1005 1.300697 GCCGTCGTGTGTCTCCTTT 60.301 57.895 0.00 0.00 0.00 3.11
813 1006 2.338984 GCCGTCGTGTGTCTCCTT 59.661 61.111 0.00 0.00 0.00 3.36
815 1008 4.736896 GGGCCGTCGTGTGTCTCC 62.737 72.222 0.00 0.00 0.00 3.71
816 1009 3.916392 CTGGGCCGTCGTGTGTCTC 62.916 68.421 0.00 0.00 0.00 3.36
817 1010 3.991051 CTGGGCCGTCGTGTGTCT 61.991 66.667 0.00 0.00 0.00 3.41
834 1027 2.524148 AAACTTGGTGGGCTGGGC 60.524 61.111 0.00 0.00 0.00 5.36
836 1029 1.341209 GAAAGAAACTTGGTGGGCTGG 59.659 52.381 0.00 0.00 0.00 4.85
863 1056 4.855340 ACCAGACCAACAAGAAAGAAAGA 58.145 39.130 0.00 0.00 0.00 2.52
864 1057 4.884164 AGACCAGACCAACAAGAAAGAAAG 59.116 41.667 0.00 0.00 0.00 2.62
865 1058 4.640201 CAGACCAGACCAACAAGAAAGAAA 59.360 41.667 0.00 0.00 0.00 2.52
866 1059 4.199310 CAGACCAGACCAACAAGAAAGAA 58.801 43.478 0.00 0.00 0.00 2.52
867 1060 3.199946 ACAGACCAGACCAACAAGAAAGA 59.800 43.478 0.00 0.00 0.00 2.52
868 1061 3.545703 ACAGACCAGACCAACAAGAAAG 58.454 45.455 0.00 0.00 0.00 2.62
869 1062 3.644966 ACAGACCAGACCAACAAGAAA 57.355 42.857 0.00 0.00 0.00 2.52
870 1063 3.278574 CAACAGACCAGACCAACAAGAA 58.721 45.455 0.00 0.00 0.00 2.52
871 1064 2.238646 ACAACAGACCAGACCAACAAGA 59.761 45.455 0.00 0.00 0.00 3.02
872 1065 2.355756 CACAACAGACCAGACCAACAAG 59.644 50.000 0.00 0.00 0.00 3.16
873 1066 2.026729 TCACAACAGACCAGACCAACAA 60.027 45.455 0.00 0.00 0.00 2.83
874 1067 1.557371 TCACAACAGACCAGACCAACA 59.443 47.619 0.00 0.00 0.00 3.33
875 1068 2.325583 TCACAACAGACCAGACCAAC 57.674 50.000 0.00 0.00 0.00 3.77
876 1069 2.487086 CCATCACAACAGACCAGACCAA 60.487 50.000 0.00 0.00 0.00 3.67
877 1070 1.072173 CCATCACAACAGACCAGACCA 59.928 52.381 0.00 0.00 0.00 4.02
878 1071 1.347707 TCCATCACAACAGACCAGACC 59.652 52.381 0.00 0.00 0.00 3.85
879 1072 2.037772 ACTCCATCACAACAGACCAGAC 59.962 50.000 0.00 0.00 0.00 3.51
880 1073 2.300152 GACTCCATCACAACAGACCAGA 59.700 50.000 0.00 0.00 0.00 3.86
881 1074 2.037641 TGACTCCATCACAACAGACCAG 59.962 50.000 0.00 0.00 29.99 4.00
882 1075 2.046292 TGACTCCATCACAACAGACCA 58.954 47.619 0.00 0.00 29.99 4.02
883 1076 2.839486 TGACTCCATCACAACAGACC 57.161 50.000 0.00 0.00 29.99 3.85
884 1077 3.496130 CACTTGACTCCATCACAACAGAC 59.504 47.826 0.00 0.00 36.92 3.51
885 1078 3.387699 TCACTTGACTCCATCACAACAGA 59.612 43.478 0.00 0.00 36.92 3.41
886 1079 3.732212 TCACTTGACTCCATCACAACAG 58.268 45.455 0.00 0.00 36.92 3.16
889 1082 2.038952 CCCTCACTTGACTCCATCACAA 59.961 50.000 0.00 0.00 36.92 3.33
891 1084 1.902508 TCCCTCACTTGACTCCATCAC 59.097 52.381 0.00 0.00 36.92 3.06
897 1090 1.353091 AGGGTTCCCTCACTTGACTC 58.647 55.000 4.31 0.00 0.00 3.36
901 1094 1.555533 GACCTAGGGTTCCCTCACTTG 59.444 57.143 14.81 2.65 35.25 3.16
904 1097 0.981801 GGGACCTAGGGTTCCCTCAC 60.982 65.000 24.44 5.83 45.55 3.51
919 1112 3.147629 TCGAATAGAGGAATCGAGGGAC 58.852 50.000 0.00 0.00 40.34 4.46
989 1234 1.460273 GGACGCCATCCTCTCCTCTC 61.460 65.000 0.00 0.00 45.22 3.20
992 1237 2.835431 CGGACGCCATCCTCTCCT 60.835 66.667 0.44 0.00 46.69 3.69
1045 1290 1.282653 GGAAGGAAGGGGAAGGGAGG 61.283 65.000 0.00 0.00 0.00 4.30
1052 1297 0.253207 GGAGGAAGGAAGGAAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
1053 1298 1.282653 GGGAGGAAGGAAGGAAGGGG 61.283 65.000 0.00 0.00 0.00 4.79
1072 1317 1.137872 CAAGCTGCTAGGTGTAGGGAG 59.862 57.143 0.90 0.00 0.00 4.30
1073 1318 1.195115 CAAGCTGCTAGGTGTAGGGA 58.805 55.000 0.90 0.00 0.00 4.20
1078 1323 2.158755 ACTGAAACAAGCTGCTAGGTGT 60.159 45.455 0.90 0.23 0.00 4.16
1080 1325 2.938956 ACTGAAACAAGCTGCTAGGT 57.061 45.000 0.90 1.26 0.00 3.08
1082 1327 4.818534 TGAAACTGAAACAAGCTGCTAG 57.181 40.909 0.90 0.00 0.00 3.42
1083 1328 5.532406 AGATTGAAACTGAAACAAGCTGCTA 59.468 36.000 0.90 0.00 38.51 3.49
1086 1362 5.684626 GTGAGATTGAAACTGAAACAAGCTG 59.315 40.000 0.00 0.00 39.70 4.24
1098 1374 5.674933 AAGAAAGACGGTGAGATTGAAAC 57.325 39.130 0.00 0.00 0.00 2.78
1103 1379 5.368989 ACAAGAAAGAAAGACGGTGAGATT 58.631 37.500 0.00 0.00 0.00 2.40
1104 1380 4.962155 ACAAGAAAGAAAGACGGTGAGAT 58.038 39.130 0.00 0.00 0.00 2.75
1106 1382 5.485662 AAACAAGAAAGAAAGACGGTGAG 57.514 39.130 0.00 0.00 0.00 3.51
1107 1383 5.646360 AGAAAACAAGAAAGAAAGACGGTGA 59.354 36.000 0.00 0.00 0.00 4.02
1108 1384 5.739161 CAGAAAACAAGAAAGAAAGACGGTG 59.261 40.000 0.00 0.00 0.00 4.94
1109 1385 5.414765 ACAGAAAACAAGAAAGAAAGACGGT 59.585 36.000 0.00 0.00 0.00 4.83
1110 1386 5.880341 ACAGAAAACAAGAAAGAAAGACGG 58.120 37.500 0.00 0.00 0.00 4.79
1111 1387 8.122952 ACATACAGAAAACAAGAAAGAAAGACG 58.877 33.333 0.00 0.00 0.00 4.18
1155 1459 4.096532 GTGATGACGGAGATCACTTCTACA 59.903 45.833 13.50 0.00 44.28 2.74
1156 1460 4.498345 GGTGATGACGGAGATCACTTCTAC 60.498 50.000 17.81 3.74 46.08 2.59
1157 1461 3.632604 GGTGATGACGGAGATCACTTCTA 59.367 47.826 17.81 0.00 46.08 2.10
1158 1462 2.428890 GGTGATGACGGAGATCACTTCT 59.571 50.000 17.81 0.00 46.08 2.85
1159 1463 2.166459 TGGTGATGACGGAGATCACTTC 59.834 50.000 17.81 7.76 46.08 3.01
1160 1464 2.179427 TGGTGATGACGGAGATCACTT 58.821 47.619 17.81 0.00 46.08 3.16
1161 1465 1.852633 TGGTGATGACGGAGATCACT 58.147 50.000 17.81 0.00 46.08 3.41
1237 1550 0.679002 GAGCAGAGCAATGGCCAAGA 60.679 55.000 10.96 0.00 42.56 3.02
1241 1554 2.772691 GCAGAGCAGAGCAATGGCC 61.773 63.158 0.00 0.00 42.56 5.36
1245 1572 0.903236 TGAGAGCAGAGCAGAGCAAT 59.097 50.000 0.00 0.00 0.00 3.56
1246 1573 0.903236 ATGAGAGCAGAGCAGAGCAA 59.097 50.000 0.00 0.00 0.00 3.91
1261 1588 9.309516 CCTGATTGGATTGATTTTTGTTATGAG 57.690 33.333 0.00 0.00 38.35 2.90
1275 1602 2.928334 CAGAGTCCCCTGATTGGATTG 58.072 52.381 0.00 0.00 38.35 2.67
1279 1606 1.153289 CGCAGAGTCCCCTGATTGG 60.153 63.158 0.00 0.00 36.29 3.16
1402 1785 9.896263 GGATGTAAGTAAATAGAGTAGTGCTAC 57.104 37.037 1.33 1.33 36.35 3.58
1404 1787 8.770010 AGGATGTAAGTAAATAGAGTAGTGCT 57.230 34.615 0.00 0.00 0.00 4.40
1405 1788 8.630917 TGAGGATGTAAGTAAATAGAGTAGTGC 58.369 37.037 0.00 0.00 0.00 4.40
1406 1789 9.953697 GTGAGGATGTAAGTAAATAGAGTAGTG 57.046 37.037 0.00 0.00 0.00 2.74
1407 1790 9.134055 GGTGAGGATGTAAGTAAATAGAGTAGT 57.866 37.037 0.00 0.00 0.00 2.73
1408 1791 9.132923 TGGTGAGGATGTAAGTAAATAGAGTAG 57.867 37.037 0.00 0.00 0.00 2.57
1444 1827 1.250154 GGCAAGGGTAGTGCAATGCA 61.250 55.000 2.72 2.72 44.07 3.96
1445 1828 0.967380 AGGCAAGGGTAGTGCAATGC 60.967 55.000 0.00 0.00 44.07 3.56
1449 1836 1.633432 ACATAAGGCAAGGGTAGTGCA 59.367 47.619 0.00 0.00 44.07 4.57
1453 1840 3.270877 GTGTCACATAAGGCAAGGGTAG 58.729 50.000 0.00 0.00 0.00 3.18
1455 1842 1.423541 TGTGTCACATAAGGCAAGGGT 59.576 47.619 0.18 0.00 0.00 4.34
1457 1844 3.317711 TGTTTGTGTCACATAAGGCAAGG 59.682 43.478 6.48 0.00 0.00 3.61
1460 1847 5.301551 AGAATTGTTTGTGTCACATAAGGCA 59.698 36.000 6.48 0.00 0.00 4.75
1461 1848 5.772521 AGAATTGTTTGTGTCACATAAGGC 58.227 37.500 6.48 0.00 0.00 4.35
1462 1849 8.099364 ACTAGAATTGTTTGTGTCACATAAGG 57.901 34.615 6.48 0.00 0.00 2.69
1463 1850 8.993121 AGACTAGAATTGTTTGTGTCACATAAG 58.007 33.333 6.48 0.00 0.00 1.73
1465 1852 9.639601 CTAGACTAGAATTGTTTGTGTCACATA 57.360 33.333 6.48 0.00 0.00 2.29
1536 2040 7.395772 TGTTGGTCCATGATGTACATACAATTT 59.604 33.333 8.71 0.00 39.99 1.82
1579 2120 1.137282 GGTGAAGCAGAGGTAGGCTAC 59.863 57.143 16.40 16.40 40.01 3.58
1582 2123 1.222113 GGGTGAAGCAGAGGTAGGC 59.778 63.158 0.00 0.00 0.00 3.93
1586 2127 2.529744 GGGTGGGTGAAGCAGAGGT 61.530 63.158 0.00 0.00 0.00 3.85
1622 2163 4.218312 CCAAAGGAGGCCTTAATAAGCAT 58.782 43.478 6.77 0.00 43.92 3.79
1624 2165 3.632333 ACCAAAGGAGGCCTTAATAAGC 58.368 45.455 6.77 0.00 43.92 3.09
1627 2168 4.938575 TGAACCAAAGGAGGCCTTAATA 57.061 40.909 6.77 0.00 43.92 0.98
1628 2169 3.825908 TGAACCAAAGGAGGCCTTAAT 57.174 42.857 6.77 0.00 43.92 1.40
1629 2170 3.825908 ATGAACCAAAGGAGGCCTTAA 57.174 42.857 6.77 0.00 43.92 1.85
1632 2173 1.566231 CCTATGAACCAAAGGAGGCCT 59.434 52.381 3.86 3.86 33.87 5.19
1633 2174 1.410224 CCCTATGAACCAAAGGAGGCC 60.410 57.143 0.00 0.00 31.64 5.19
1635 2176 3.136626 CCTACCCTATGAACCAAAGGAGG 59.863 52.174 0.00 0.00 31.64 4.30
1636 2177 4.037927 TCCTACCCTATGAACCAAAGGAG 58.962 47.826 0.00 0.00 31.64 3.69
1639 2180 6.889722 TGATTTTCCTACCCTATGAACCAAAG 59.110 38.462 0.00 0.00 0.00 2.77
1640 2181 6.795590 TGATTTTCCTACCCTATGAACCAAA 58.204 36.000 0.00 0.00 0.00 3.28
1641 2182 6.395780 TGATTTTCCTACCCTATGAACCAA 57.604 37.500 0.00 0.00 0.00 3.67
1642 2183 6.590656 ATGATTTTCCTACCCTATGAACCA 57.409 37.500 0.00 0.00 0.00 3.67
1643 2184 7.017254 TCCTATGATTTTCCTACCCTATGAACC 59.983 40.741 0.00 0.00 0.00 3.62
1644 2185 7.974504 TCCTATGATTTTCCTACCCTATGAAC 58.025 38.462 0.00 0.00 0.00 3.18
1645 2186 8.575736 TTCCTATGATTTTCCTACCCTATGAA 57.424 34.615 0.00 0.00 0.00 2.57
1646 2187 8.757307 ATTCCTATGATTTTCCTACCCTATGA 57.243 34.615 0.00 0.00 0.00 2.15
1649 2190 8.470109 TCCTATTCCTATGATTTTCCTACCCTA 58.530 37.037 0.00 0.00 0.00 3.53
1651 2192 7.569599 TCCTATTCCTATGATTTTCCTACCC 57.430 40.000 0.00 0.00 0.00 3.69
1680 2221 7.504926 TTAGCCTAGACTCTAATGGGAAAAA 57.495 36.000 0.00 0.00 0.00 1.94
1681 2222 7.509546 CATTAGCCTAGACTCTAATGGGAAAA 58.490 38.462 20.12 0.00 43.93 2.29
1682 2223 7.067496 CATTAGCCTAGACTCTAATGGGAAA 57.933 40.000 20.12 0.00 43.93 3.13
1683 2224 6.672266 CATTAGCCTAGACTCTAATGGGAA 57.328 41.667 20.12 0.00 43.93 3.97
1691 2232 8.773216 AGGAAAATAAACATTAGCCTAGACTCT 58.227 33.333 0.00 0.00 0.00 3.24
1692 2233 8.966069 AGGAAAATAAACATTAGCCTAGACTC 57.034 34.615 0.00 0.00 0.00 3.36
1705 2246 8.748412 CCTCCACATTTCATAGGAAAATAAACA 58.252 33.333 6.65 0.00 45.52 2.83
1706 2247 8.966868 TCCTCCACATTTCATAGGAAAATAAAC 58.033 33.333 6.65 0.00 45.52 2.01
1707 2248 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
1712 2253 6.581388 AGATCCTCCACATTTCATAGGAAA 57.419 37.500 4.85 4.85 46.36 3.13
1713 2254 6.388100 AGAAGATCCTCCACATTTCATAGGAA 59.612 38.462 0.00 0.00 39.68 3.36
1715 2256 6.183361 TGAGAAGATCCTCCACATTTCATAGG 60.183 42.308 0.00 0.00 32.32 2.57
1716 2257 6.824553 TGAGAAGATCCTCCACATTTCATAG 58.175 40.000 0.00 0.00 32.32 2.23
1717 2258 6.813293 TGAGAAGATCCTCCACATTTCATA 57.187 37.500 0.00 0.00 32.32 2.15
1718 2259 5.705397 TGAGAAGATCCTCCACATTTCAT 57.295 39.130 0.00 0.00 32.32 2.57
1719 2260 5.705397 ATGAGAAGATCCTCCACATTTCA 57.295 39.130 0.00 0.00 32.32 2.69
1720 2261 8.592809 AGTATATGAGAAGATCCTCCACATTTC 58.407 37.037 6.84 0.00 32.32 2.17
1723 2264 7.838696 CCTAGTATATGAGAAGATCCTCCACAT 59.161 40.741 6.77 6.77 32.32 3.21
1724 2265 7.178573 CCTAGTATATGAGAAGATCCTCCACA 58.821 42.308 0.00 0.00 32.32 4.17
1725 2266 7.179269 ACCTAGTATATGAGAAGATCCTCCAC 58.821 42.308 0.00 0.00 32.32 4.02
1726 2267 7.350044 ACCTAGTATATGAGAAGATCCTCCA 57.650 40.000 0.00 0.00 32.32 3.86
1732 2517 7.770662 TCCTTGGACCTAGTATATGAGAAGAT 58.229 38.462 2.16 0.00 0.00 2.40
1742 2527 5.839606 GTGGAGTATTCCTTGGACCTAGTAT 59.160 44.000 5.79 0.00 44.36 2.12
1758 2543 7.309770 ACAAGAGAAGAGAAAAGTGGAGTAT 57.690 36.000 0.00 0.00 0.00 2.12
1785 2570 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
1786 2571 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
1788 2573 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1789 2574 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
1792 2577 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
1793 2578 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
1870 2655 3.644335 AGAGGTGGAGGTAATGAGGTAC 58.356 50.000 0.00 0.00 0.00 3.34
1871 2656 4.481280 AGTAGAGGTGGAGGTAATGAGGTA 59.519 45.833 0.00 0.00 0.00 3.08
1872 2657 2.950990 AGAGGTGGAGGTAATGAGGT 57.049 50.000 0.00 0.00 0.00 3.85
1873 2658 3.639094 CAGTAGAGGTGGAGGTAATGAGG 59.361 52.174 0.00 0.00 0.00 3.86
1874 2659 3.068873 GCAGTAGAGGTGGAGGTAATGAG 59.931 52.174 0.00 0.00 0.00 2.90
1875 2660 3.031736 GCAGTAGAGGTGGAGGTAATGA 58.968 50.000 0.00 0.00 0.00 2.57
1876 2661 3.034635 AGCAGTAGAGGTGGAGGTAATG 58.965 50.000 0.00 0.00 0.00 1.90
1877 2662 3.406512 AGCAGTAGAGGTGGAGGTAAT 57.593 47.619 0.00 0.00 0.00 1.89
1878 2663 2.921834 AGCAGTAGAGGTGGAGGTAA 57.078 50.000 0.00 0.00 0.00 2.85
1885 2670 5.700832 TGTGAACAAATAAGCAGTAGAGGTG 59.299 40.000 0.00 0.00 0.00 4.00
1925 2712 5.802956 CACAGACAAGAGTAAGCTTACTAGC 59.197 44.000 33.53 23.55 43.64 3.42
1926 2713 6.804295 CACACAGACAAGAGTAAGCTTACTAG 59.196 42.308 33.53 26.95 43.64 2.57
1939 2728 0.755079 AGCAGAGCACACAGACAAGA 59.245 50.000 0.00 0.00 0.00 3.02
1940 2729 0.866427 CAGCAGAGCACACAGACAAG 59.134 55.000 0.00 0.00 0.00 3.16
1941 2730 1.162181 GCAGCAGAGCACACAGACAA 61.162 55.000 0.00 0.00 0.00 3.18
1942 2731 1.596203 GCAGCAGAGCACACAGACA 60.596 57.895 0.00 0.00 0.00 3.41
1943 2732 2.323580 GGCAGCAGAGCACACAGAC 61.324 63.158 0.00 0.00 35.83 3.51
1968 2761 9.651913 GGGCTGAAAAGTTGATTTCATAAATAA 57.348 29.630 3.23 0.00 45.45 1.40
1969 2762 8.257306 GGGGCTGAAAAGTTGATTTCATAAATA 58.743 33.333 3.23 0.00 45.45 1.40
1970 2763 7.105588 GGGGCTGAAAAGTTGATTTCATAAAT 58.894 34.615 3.23 0.00 45.45 1.40
2020 2838 2.777832 AAGGAGCCTAGCAGAAACAG 57.222 50.000 0.00 0.00 0.00 3.16
2029 2847 7.814264 ATGATGATTACAAAAAGGAGCCTAG 57.186 36.000 0.00 0.00 0.00 3.02
2051 2869 5.850557 TCCATATGCCAAAACCTTGTATG 57.149 39.130 0.00 0.00 0.00 2.39
2052 2870 6.865834 TTTCCATATGCCAAAACCTTGTAT 57.134 33.333 0.00 0.00 0.00 2.29
2053 2871 6.127196 GGATTTCCATATGCCAAAACCTTGTA 60.127 38.462 13.31 0.00 35.64 2.41
2054 2872 5.338300 GGATTTCCATATGCCAAAACCTTGT 60.338 40.000 13.31 0.00 35.64 3.16
2176 2998 0.872449 GGGAGGGAGGGAGGGTATAA 59.128 60.000 0.00 0.00 0.00 0.98
2177 2999 0.025767 AGGGAGGGAGGGAGGGTATA 60.026 60.000 0.00 0.00 0.00 1.47
2178 3000 1.311928 AGGGAGGGAGGGAGGGTAT 60.312 63.158 0.00 0.00 0.00 2.73
2179 3001 2.134652 AGGGAGGGAGGGAGGGTA 59.865 66.667 0.00 0.00 0.00 3.69
2180 3002 3.700350 CAGGGAGGGAGGGAGGGT 61.700 72.222 0.00 0.00 0.00 4.34
2181 3003 3.700350 ACAGGGAGGGAGGGAGGG 61.700 72.222 0.00 0.00 0.00 4.30
2182 3004 2.041405 GACAGGGAGGGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
2183 3005 0.327000 ATTGACAGGGAGGGAGGGAG 60.327 60.000 0.00 0.00 0.00 4.30
2184 3006 0.326618 GATTGACAGGGAGGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
2185 3007 0.327000 AGATTGACAGGGAGGGAGGG 60.327 60.000 0.00 0.00 0.00 4.30
2186 3008 1.127343 GAGATTGACAGGGAGGGAGG 58.873 60.000 0.00 0.00 0.00 4.30
2187 3009 1.127343 GGAGATTGACAGGGAGGGAG 58.873 60.000 0.00 0.00 0.00 4.30
2188 3010 0.326618 GGGAGATTGACAGGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
2643 3473 3.788766 ATCGACGCAGCAAACCGC 61.789 61.111 0.00 0.00 42.91 5.68
2644 3474 2.096406 CATCGACGCAGCAAACCG 59.904 61.111 0.00 0.00 0.00 4.44
2711 3541 8.276325 CCTACTTCATTCATTCATTACTTACGC 58.724 37.037 0.00 0.00 0.00 4.42
2744 3590 9.577110 CACAATATCAATGTAGCTTCAAACATT 57.423 29.630 6.74 6.74 44.94 2.71
2750 3596 8.913487 ATCATCACAATATCAATGTAGCTTCA 57.087 30.769 0.00 0.00 0.00 3.02
2768 3614 5.355071 TGCTGTCAACTAAATGGATCATCAC 59.645 40.000 0.00 0.00 0.00 3.06
2809 3655 7.201350 CGATTTGAATTTCCTTTGGACGATTTC 60.201 37.037 0.00 0.00 0.00 2.17
2810 3656 6.586082 CGATTTGAATTTCCTTTGGACGATTT 59.414 34.615 0.00 0.00 0.00 2.17
2811 3657 6.072175 TCGATTTGAATTTCCTTTGGACGATT 60.072 34.615 0.00 0.00 0.00 3.34
2812 3658 5.414454 TCGATTTGAATTTCCTTTGGACGAT 59.586 36.000 0.00 0.00 0.00 3.73
2813 3659 4.757657 TCGATTTGAATTTCCTTTGGACGA 59.242 37.500 0.00 0.00 0.00 4.20
2814 3660 5.041951 TCGATTTGAATTTCCTTTGGACG 57.958 39.130 0.00 0.00 0.00 4.79
2815 3661 7.889589 AAATCGATTTGAATTTCCTTTGGAC 57.110 32.000 22.16 0.00 0.00 4.02
3017 3926 2.282180 CCAACCCCACCTGAACCG 60.282 66.667 0.00 0.00 0.00 4.44
3040 3949 2.978010 CAACACCACCACCGCCTC 60.978 66.667 0.00 0.00 0.00 4.70
3041 3950 4.579384 CCAACACCACCACCGCCT 62.579 66.667 0.00 0.00 0.00 5.52
3279 4188 0.598065 GCTTCTTCGTGGGCAACAAT 59.402 50.000 0.00 0.00 39.74 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.