>input_sequence_49909
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATGGCGTCCGTGGGGCCGACGCTCGAGTCCCTCGTC
GACCGTGAGCCTCCCTTCCCCTTCCTTCCTTCCTCCCTCCCTACACCT-------------------------------A
GCAGCTTGTTTCAGTTTCAATCTCACCGTCTT-----------------TCTTTCTTG-----------TTTTCTGTATG
TATGTATGTATGTATGTATGTAGAAGTGATCTCCGTCATCACCAACGACGGCCGCAACATCGTGGTAATTTAAG------
---CTCTTTTCTTTCTTTCTTTCTTTCTTTCTTG--------------GCCATTGCTCTGCTCTGCTCTCATAACAAAAA
TCAATC--------------------------CAAT----CAGGGGACTCTGCGGGGGTTCGACCAGGCCACCAACATCA
TCCTCGACGAGTCCCACGAGAGGGTCTACTCCACTAAGGT--------------------------AATACCAAAACGTC
AGTCATCATATATATACACTACTAGTAGCACTACTCTATTTACTTACATCCTCACCAAGGTAGAGGTG----CATTGCAC
TACCCTTGCCTTATGTGACACAAACAATTCTAGTCTAGGATTTATTTA--------------------------------
--------------------------------------------------------------------------------
-----TTTATTTATTTATTTATTGCCTTCAAGGACACAAAAATTG-----------TATGTACATCATGGACCAACAACC
TGCCTGCCC--------------------------CTGTGTAGCCTACCTCTGCTTCACCCACCCCTTATTAGCTCATAT
ATATGCTTATTAAGGCCTCCTTTGGTTCATAGGGTAGGAAAATCATAGGAATAGGATTTTTTTTTCCCATTAGAGTCTAG
GCTAATGTTTATTTTCCTATGAAATGT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GGAGGATCTTCTCATATACTAGGTCCAAGGAATACTCCACTTTTCTCTT
CTCTTGTATAAGTACTCCCTCCGTAAACTAATATAAGAGCATTTAGAATACTAAAGTAGTGATCTAAACACTCTTATATT
AATTTACAGAGGGAGTACCTCATTACCTCCACCTCTACTGCTTATTTGTTCACAA--GGTGTCATGCTAATGC--TAGTA
AGCTTACTCTTGTCTGTGTGCTCTGCTGCCCTGGT----TTTATTTATGAAATCAACTTTTCAGCCCCATCCTTTTT-CC
TCA------------------------TCCAGTTTCGCTGTTTCTGCTAGGCTCCTTTTTGTAATCATCATACAAGGTTT
TGGCATATGGAAATCCTACAAGACTTGCTGTCTTTCTTGCATAAATAAATAAATAAATAAATTATACGTACTAGTTCCTT
GGACACTGACTGACTCTTCTTGTTGAGT----TTTATTTATACCCTCCCTCCCTCCCTGTCAATCTCCCTGCTGACAGAC
ACTGTGTTGTGTTGCAGGAGGGAGTACAGCAGCTTGTCCTCGGACTGTACATCATCAGGGGCGACAACATGTGCGTAGTG
CCCCTTTCACTTCTGTGATATGTACTATGCATTAACTGAATTTGTATGTATGTATGTATGTATGTATGTATGTA------
--AAAATGAAGTTGTTTGTTGACGGCGTGTGCAGAGGCGTGGTGGGTGAGGTGGACGAGGAGCTGGACGCGGCGCTGGAC
ATGTCCAAGCTGAGAGCGCAGCCCCTCAAGCCGGTCATCCACTGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>chr1B_1_TraesCS1B01G478200
CTAGCCAGGCATCTCCCGTCGGGGCTGAAAGAAACGGCCAATACAGCCTCCGTGTGGCCTGCAGGCAGATGGGAACTCAG
ATTGGCATC----------------------------------------------CATCATTCCTTGCTACTGACATGAA
GCAAGCAGAGCGGAGCAGAAAGAGAAGCAGGAGT---------------------GATGGGATGGGATGGAAGTAGCGAG
GTACCTACCTGCGATTGTGGCTGAGCAGCGGTTGACGGGCCTGATGCGGAAGACGGCCTGCGGCTGGTAGACGATGCGCA
GGGTGACCTCGGCGGTGGCTGTCAAATCAAATCAAATTTTTAA-----------TTTGA----GAGAAGGAAGGATAGGA
AGA---------------------------------------------GACTGACTGACTGACTGACCGTTGTTGCGTTG
CATGAAGGCGCCGAGCTGGAGGGAGAGCTCCTCATCGCCGACGTAGAAGGCGTAGGGAAGCTTGTCCTCCTGCAATTAGC
ATCTGCATCTGTTTGAGAATCAAGGAAGAAGTAGT----GAAAAGAAGAAGAAGAAGAAGAAGAAG--AAGAAGAAGAAG
AAG---------ACGTTGTGCAGTAGTTGGTTGACGATGTCCTGGAGCTGCGGCGGTCCGACGTTGTGCGGCAGGTAGAG
CGCCGCGCCCAGCTGCTCCCCCTCCGCGCTCACCAGCTGGCACATCACGCTGCTGCTGCTGCCGTTCCCGGCGGCGGCGG
CGTCCATCTCTCCCTCTCTCTC-TTTTTCTTCTCTGGTTTG---------------------GAAGGGAGGGGAGAAGCG
GC--------GGCGGAGGAGGAGGGAAAGAGAGAGGGCGG----------CTGCTCTGCTCTGTTTGGGCCGGGTCGTCC
GTCGCCGCTCA----------TAATAATAACAGCAGGCAGCCAGAAAGGAGACACACGACGGCCCAGCCCAGCCCACCAA
GTTTCTTTCTTTCTTTCTTTCTTTCTTGTTGGTCTGGTCTGTTGTGATGGAGTCAAGTGAGGGAACCCTAGGT-------
---------CCCTCGATTCCTCTATTCGATTCGACCGCCG--CCGCCGCCGCCGCCCAAGCCCGAGGAGGA---------
-------------------------GAGGAGAGGAGAGGAGAGGATGGCGTCCGTGGGGCCGACGCTCGAGTCCCTCGTC
GACCGTGAGCCTCCCTTCCCCTTCCTTCCTTCCTCCCTCCCTACACCT-------------------------------A
GCAGCTTGTTTCAGTTTCAATCTCACCGTCTT-----------------TCTTTCTTG-----------TTTTCTGTATG
TATGTATGTATGTATGTATGTAGAAGTGATCTCCGTCATCACCAACGACGGCCGCAACATCGTGGTAATTTAAG------
---CTCTTTTCTTTCTTTCTTTCTTTCTTTCTTG--------------GCCATTGCTCTGCTCTGCTCTCATAACAAAAA
TCAATC--------------------------CAAT----CAGGGGACTCTGCGGGGGTTCGACCAGGCCACCAACATCA
TCCTCGACGAGTCCCACGAGAGGGTCTACTCCACTAAGGT--------------------------AATACCAAAACGTC
AGTCATCATATATATACACTACTAGTAGCACTACTCTATTTACTTACATCCTCACCAAGGTAGAGGTG----CATTGCAC
TACCCTTGCCTTATGTGACACAAACAATTCTAGTCTAGGATTTATTTA--------------------------------
--------------------------------------------------------------------------------
-----TTTATTTATTTATTTATTGCCTTCAAGGACACAAAAATTG-----------TATGTACATCATGGACCAACAACC
TGCCTGCCC--------------------------CTGTGTAGCCTACCTCTGCTTCACCCACCCCTTATTAGCTCATAT
ATATGCTTATTAAGGCCTCCTTTGGTTCATAGGGTAGGAAAATCATAGGAATAGGATTTTTTTTTCCCATTAGAGTCTAG
GCTAATGTTTATTTTCCTATGAAATGT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GGAGGATCTTCTCATATACTAGGTCCAAGGAATACTCCACTTTTCTCTT
CTCTTGTATAAGTACTCCCTCCGTAAACTAATATAAGAGCATTTAGAATACTAAAGTAGTGATCTAAACACTCTTATATT
AATTTACAGAGGGAGTACCTCATTACCTCCACCTCTACTGCTTATTTGTTCACAA--GGTGTCATGCTAATGC--TAGTA
AGCTTACTCTTGTCTGTGTGCTCTGCTGCCCTGGT----TTTATTTATGAAATCAACTTTTCAGCCCCATCCTTTTT-CC
TCA------------------------TCCAGTTTCGCTGTTTCTGCTAGGCTCCTTTTTGTAATCATCATACAAGGTTT
TGGCATATGGAAATCCTACAAGACTTGCTGTCTTTCTTGCATAAATAAATAAATAAATAAATTATACGTACTAGTTCCTT
GGACACTGACTGACTCTTCTTGTTGAGT----TTTATTTATACCCTCCCTCCCTCCCTGTCAATCTCCCTGCTGACAGAC
ACTGTGTTGTGTTGCAGGAGGGAGTACAGCAGCTTGTCCTCGGACTGTACATCATCAGGGGCGACAACATGTGCGTAGTG
CCCCTTTCACTTCTGTGATATGTACTATGCATTAACTGAATTTGTATGTATGTATGTATGTATGTATGTATGTA------
--AAAATGAAGTTGTTTGTTGACGGCGTGTGCAGAGGCGTGGTGGGTGAGGTGGACGAGGAGCTGGACGCGGCGCTGGAC
ATGTCCAAGCTGAGAGCGCAGCCCCTCAAGCCGGTCATCCACTGAAGATGATGAAATGTTCTATCGATCTGATCCTGATC
GCACAAGCCGAAGCTGATGTTGTTCAGTCAATCTGTACCGTAGGTTAATCGATTGATCGCTCACTCATATCTCATATCTC
ATATCATGGACCCTTGTATGATGAAAAAAAACGCGGTTTGCTGCGTCGATGGACCGGTCATGTTCTTGTATGAGAGAGAG
AGATACATGCATCTCTGTGCGCGTAAGT----------------AATGAATGAATGAAGTAGGCAATTAAATGTTTGAAG
CTACATTGATATTGTGATGATCCATTTAGTTGACAGCAGAGAAGAGAAATTGCCGAAATCGTCCAAAGGAAATTCAAATC
GATTTTTTACACAGGTACTCCGTAGTAAATATACACTATGTATGTGTGTAGATGATATACATTTGCTTGCATTGCAT---
------------------------------------------------------------GTAGAGCAGATATCTAGATA
GATAGATAGATAGATAGGTTGGTAGGTAGGTAAAAAAAGGTGGATGATGGTGCTCCGGCTCCGGCTCCGGCTCCGGCTCC
GGTGGCGGTTCAGGTGGGGTTGGAGGCGGAGGCGGTGGTGGTGTTGGGCCTAACGGCGCTGTAGTTGCAGGAGATGAAGA
ACTGGCCCTGACGGGGGCCGGTGAGGCAGGGGGCGCGGCCGCAGCCGACGTAGTGGTACGTCTTCTCGATCATGATGACG
AAGTGGCCGCAGTCGCGGAAGTCGTGGCCGGAGGTGCAGTGCTTGGTGCCCTTCTCGTAGATGTACTCCTCCCTCTCCCA
GCTGCACAGCGCGTCCTCCGCGGTGCCATTGTTGCCCACGAAGAAGCACTCGCCGTACCCCAGCGGATGGGCCTGCGGCG
AGTGCCGGGCCTGGTCGCAGTCCTGCTGTATCTGCGCCGCCCACCGCCGCGCGTACAGGGCCAGCGTCTTGTCCCACGCC
AGCGTCGGCGCGTCGTACTTGGCGCGCACCTTGTTGTGCTCGTTCACGAACTCGCGGGACATGCCCTTGTAGAACCCCGC
CCCC
>chr1D_1
CTAGCCAGACATCTCCCGTCGGGGCTGAAAGAAACGGCCAATACAGCCTCCGTGTGGCCTGCAGGCAGACGGTAAGATTG
TCATCATTCCTTGCTACTCACAAGCAAGCAGAGCAGAGACAGACGGTAAGATTGTCATCATTCCTTGCTACTCACAAGCA
--------AGCAGAGCAGAGACAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCATGGATGGGACGGGATGGAAGTAGCGAG
GTACCT----GCGATTGTTGCTGAGCATCGGTTGACGGGCCTGATGCGGAAGACGGCCTGCGGCTGGTAGACGATGCGCA
GGGTGACCTCCGCGGTGGCT-TCAAATCAAATCAAATCAAAATCAAAATCAAATTGTTTATTTGAGAAGGAAGGAAGATT
GATTGATTCGTTGTTGATTATATGCTACTATTCT-------ACTGACTGACTGACTGACTGACTGACCGTTGTTGCGTTG
CATGAAGGCGCCGAGCTGGAGGGAGAGCTCCTCATCGCCGACGTAGAAGGCGTAGGGAAGCTTGTCCTCCTT---TTGCG
TTGCATTGCATATTTGCATCAGGT---GAGGTAGG----AAAAAGAAGAGAGAGAGCAAGAAGAAGAAAAGAAGAAGAAG
AAGCAAATACGTACGTTGTGTAGTAGTTGGTTGACGATGTCCTGGAGCTGCGGCGGTCCGACGTTGTGCGGCAGGTAGAG
CGCCGCGCCCAGCTGCTCCCCCTCCGCGCTCACCAGCTGGCACATCACGCTTCCGCTGCTGCCGTTGCCGCCGGCGCCGT
CCA-----------TCTCTCTTTCTTTTCTTTTCTTTTCTTTTTCTTGTCGCTCCTGGATGAGAGGGGAGGGGCGAAGCG
GC--------GGCGGCGGAGGAGGAGGAGGAGGAAGAAGACGAGGGAGGTCTGCTCTGCTCTGTTTGGGTCGGGTCGGGT
CGTCCGTCGCAGGTTGCTTGCTAATAATAACAGAAGAAGACGGCCCA--------------GCCCATCACAGCCCACCAA
GTCTCTTTCTTTCTTGT----------------------TGGTCTGATGAAGTGAACTGAGGGAACCCTAGCTCGCTCGC
CTCCGGCCGCCCTCGATTCCTCTATTCGATTCGACCAG--------CGCCGCCGCCGAAGCCCGAGGAGGA---------
-------------------------GAGGAGGAAAGGG----GGATGGCGTCCGTGGGGCCGACGCTCGAGTCCCTCGTC
GACCGTGAGTCTCCCTG-CCCTTCCTTCCTCCCTCCACC-----------------------------------------
-TAGCTTGTTTCAATTTCCTTGGATTTCC---TCCACTCAACTCTTTTCTCCTTGTTCCAATCTTTTTCTTTTCTGTATG
TATGTATGTATGTATGTAGAG----GTGATCTCCGTCATCACCAACGACGGCCGCAACATCGTGGTAAGCTCCATCTACT
TATCTCTTTTCTTTTCTTGGCCCCGCCCGCC-----ATTGCTATTGCTGCCTCTGCTCTGCTCTGCTTCATAAC------
------------AAAAAAATTTCTTCTTTCTTGTTGTCTCCAGGGGACTCTTCGGGGGTTCGACCAGGCCACCAACATCA
TCCTCGACGAGTCCCACGAGAGGGTCTACTCCACTAAGGTAATACACCTCACTACCTACCTTACCTTGCCTTGCCTTGCC
TTGTACTCAATTACTAGCTATCCTTTTTATTACCCATATAACATACACTACATACCTAGACAGAGAG-------------
---------------------AAACAATTCTAGTCTAGGAGGTAGATATATAGAGGTGCTTCCAAATTCTGAGAGGGAGG
GAGGGAGGGAGGGACGAATATAATTGATGCTTGCAAAATTACCAGGCCTTGTTTTGCCCTCGTAACTACACTATTATTCA
TTTCCTTTATTTATTTATTTATTGCCTTCAAGGACACAAGAATTGGTATATGTATGTATGTACATAATTGACCAACAACC
TGCCTGCCTG-------------------------------------CCTCTGCTTCACCCC-------TTAGCTCATAT
GCTTACAATGTACAAGTTCTAGGATACAAGAAACAGGCTTTTTGTGACCGACCGACCGACCGACGCAGCTTGCTTGCTTG
ATGAGAAATTCGG-------AAATCCGATAAAGCACTCTATTC----------------TATCCACAAAGTTGTACAGGC
GCAGACCTT-------------CTTGTGATCCACTTGTTGACCTACGGCGCCACAGAATTAATTACTGAGGTGGCCTTTT
TCTCATGTTATCC-------AAGGAGGAATGTTCAATCTAGCCATGTCACTTACGCTTTACCGTGCAGTTTT--------
------------------ATGTATACATGAGGGAGGGTCTTCTCATGTACTAGGTCCAAGGATTACTCCGCTTTTCTCTT
CTCTTGCA------------------------------------------------------------------------
-----------------------TACCTCTACCTCTACTGCTTATTTCTTCACAAAAGGTGTCATGCTAGTTATTTAGTA
AGCTTAC-----TGTGTGTGCTCTGCTCTGCTGCCCCGGT---TTTATGAAATCAACTTTTCAGCCCCATCCTTTTTTCC
TCTGTTTGCCAATGTGGTGATCGGTTTCCCAGTTTCGGTGTTTCTGTTAGGCTCCTTTTTGTAACCAC----CAAGGTTT
TGGCATATGGAAATCCTACAAGACTTGCTGTCTTTCTTGCATA--------AATAAATAAATTATACTAGCTAGTTCCTT
GGGCACTGACT----CTTCTTGTTGAGTTTTATTTATA------------CCCTCCCTGTCAATCTCCCTGCTGACAGAC
ACTGTGTTGTGTTGCAGGAGGGAGTACAGCAGCTTGTCCTCGGACTGTACATCATCAGGGGCGACAACATGTGCGTAGTG
CCCCTTTCACTTGTGTGATATGTACTATGCATTAACTGCATTTTT-------------TGTATGTATGTATGTATGTATG
TAAAAATGAAGCTGTTTGTTGACGGCGTATGCAGAGGCGTGGTGGGTGAGGTGGACGAGGAGCTGGACGCGGCGCTGGAC
ATGTCCAAGCTGAGAGCGCAGCCCCTCAAGCCGGTCATCCACTGAAGATGATGAAATGTTCTATCGATCTGATCCTGATC
GCGCAAGCCGAAGCTGATGTTGTTCAGTCAATCTGTACCGTAGGTTAATCGATTGATCGCTCACTCAT--CTCATATCTC
ATATCATGGACCCTTGTATGATGAAAAAAA-CAGGGTTTGCTGCGTCGATGGACCGGTCATGTTCTTGTATGAGAGAGAG
AGATACATGCATCTCTGTGCACGTAAGTAATGAATGAATGAATGAATGAATGAATGAAGTAGGCAATTG-ATGTTGGAAG
CTACATTGATATTATGATGATCCATTTAGTTGACAGCAGAGAAGAGAAATCG---------TCGAAAGGAAATTGAAATC
AATTTTTTACACAGGTACTCCGTAGTAAATATACACTATGTATGTGTGTAGATGATACACATTTGCTTGCATTGCATTGC
ATTGCATGTGAGCAGATATATCTAGTC-----------------------------------------------------
----GATAGATAGATAGGTAGGTA--TAGGTAAAAAAAGGTGGATGATGGTGCTCCGGCTCCGGCT------------CC
GGTGGTGGTTCAGGAGGGGTTGGAGGCGCCAGCGGTGGTGGCGTTGGGCCTAACGGCGCTGTAGTTGCAGGAGATGAAGA
ACTGGCCCTGGCGGGGGCCGCTAAGGCAGGGGGCGCGGCCGCAGCCGACGAAGTGGTACGTCTTCTCGATCATGATGACA
AAGTGGCCGCAGTCGCGGAAGTCGTGGCCGGAGGTGCAGTGCTTGGTGCCCTTCTCGTAGATGTACTCCTCCCTCTCCCA
GCTGCACAGCGCGTCCTCCGCGGTGCCGTTGTTGCCCACGAAGAAGCACTCGCCGTAGCCCAGCGGATGGGCCTGCGGCG
AGTGCCGGGCCTGGTCGCAGTCCTGCTGTATCTGCGCCGCCCACCGCCGCGCGTACAGGGCCAGCGTCTTGTCCCACGCC
AGCGTCGGCGCGTCGTACTTGGCGCGCACCTTGTTGTGCTCGTTCACAAACTCGCGGGACATGCCCTTGTAGAACCCCGC
CCCC
>chr1A_1
CTAGCCAAGCATCTCCCGTCGGGGCTGAAAGAAACGGCCAATACAGCCTCGGTGTGGCCTGCAGGCAGG-----------
---------------------------------------CAGACGGTAAGATTGTCATCATTCCTTGCTACTGACCGGAA
AGAAGCAGAGCAGAGCAG----------------------AGAAGCAGAATCATGGATTGGATGGAAGTAGTGAGCGTAC
TGACCT----GCGATTGTGGCTGAGCATCGGTTGACGGGCCTGATGCGGAAGACGGCCTGCGGCTGGTAGACGATGCGCA
GGGTGACCTCCGCGGTGGCT-TCAAATCAAATCAAATTGTTGA-----------TTTTGATTTGAGAAGGAA--------
GATTGATTGGTTGTTGATTATATGCTACTACTATTCTACTGACTGACTGACTGACTGACTGACTGACCGTTGTTGCGTTG
CATGAAGGCGCCGAGCTGGACGGAGAGCTCCTCGTCGCCGACGTAGAAGGCGTAGGGCAGCTTGTCCTCCTGCCGTTGCG
TTGCATTGCATATTTGCATCAGGT---GAGGTAGGTAGGAAAAAGAAGAGAGCAAGAAGCAAGAAGAAGCAACAAGAAGT
AG--------GTACGTTGTGTAGTAGTTGGTTGACGATGTCCTGGAGCTGCGGCGGTCCGACGTTGTGCGGCAGGTAGAG
CGCCGCGCCCAGCTGCTCCCCCTCCGCGCTCACCAGCTGGCACATCACGCTGCTGCTGCTTCCGTTGCCGCCGGCGGCGT
CCA-----------TCTCTCTC-CTTTTCTTTTCTTTTCTG---------------------TAGGGGAGAGGAGAGGAG
GGGAGGGGAGGGTGGCGGCGGCGGCGGAGGAAGAAGAAGACGAGGGAGGGAGGGAAAGA-CTGTTTGGGCC---------
-----------GGTTGCTTGCTAATAATAACAGAAGAAGACGGCCCA--------------GCCC----------ACCAA
GTCTCTTTCTTTCTTGT----------------------TGGTCTGGTCTGATGA----AGTGAACCCTAGCTCGATTCG
ATTCCGCCGCCGCCGCCCAAGCCCGAGGAGGACGATTCGATTCCGCCGCCGCCGCCCAAGCCCGAGGAGGACGATTCGAT
TCCACCACCGCCGCCCAAGCCCGAGGAGGAGAGAAGGGGAGAGGATGGCGTCCGTGGGGCCGACCCTCGAGTCCCTCGTC
GACCGTGAGTCTCCCTG-CCCTTCCTTCCTTCCTACTCCCCTTCTCTATGCTAAAGAAGGACTCCTTCAAATCAAGAGGA
GTAGCTTGTTTCAATTTCCTTGGATTTCTTCGTCCACTCAACTCTTTTCTCCTTCTTT-----------ATGTATGTATG
TATGTATGTATGTATGCAGAG----GTGATCTCCATCATCACCAACGACGGCCGCAACATCGTGGTAATTTAAG------
---CTCTTTTCTTTCTTTCTTTCTTTCTTCTTTACTATTGCTATTGCTGCCTCTGCTCTGCTGTCT--TCATAACAAAAA
TAAATAAAAATAAAAAATATTTCTTCTTTACTCAAT----CAGGGGACTCTGCGCGGGTTCGACCAGGCCACCAACATAA
TCCTCGACGAGTCCCACGAGAGGGTCTACTCCACTAAGGTAAGGTTATCTCTTTAGTTCAACTGCCAATACCAATACATC
GTCATCATA----------------------TACTGTATTTACTTACATCCTCACTAAGGTAGATAGAGGCACATCGCAT
TGCGCTGCTGTCATGTGACACAAAAATCCATCGCCGCTTGTAATTCTCTTACGCTTGTCTTTGCCTTACTTGAAACACAC
ACCAATCAATTGTCTGCTCTGTCTGTTTTACAAATCAAATAATTCATTCATTCATGCTATGCTATGCTATGCTTCCTGCC
TGTGTGCTTGCTTGTATCATCAATCATGAAT---------------------------------TCATGATCCAACAACA
CATTCCTTCCCCCAAAATGACTTACTTATCATGCTCTGTTTACCCTGCCTCTAGTCTATCTATCTTTACAATGTCCCCTG
ATTCTGTCTGCCGTGATGTGA---------------------------------------------------------TG
ATGAGAAACAATAATAAATCAAATCCGCTAAAACAAAACACACACTCACTCTGTTCTAGTATCCACAAACATGTACTCCC
TCTGTAAACTAGTACGTACATGCTTGTGATCCTCTCTGTGCCTTGCGGCTGCACAGAATTACCAAGCTTAG----CTTTT
TCTCATGTGATTACATAAGGAAGGAGGAATCCTCGTTCTAGCCGTGCCAC----GCTTTACCATGCAACACCACAACACT
TCATCCCCCCATATGTACATGTATACATCATCTTCT--------------TAGGACCAAGGACCAGTCCAGCTTTCTATT
ATAACTCTACTGGTCT----------------------------------------------------------------
----------------------------------------CTTATTTGTTCACAA--GGTGTCATGCTAG----TTAGTA
AGCTTAC-----TCTGTGTGCTCTGCTGCCCCGGT----T---TTTATGAAATCAAATTTTCAGCCCCATCCTTTTT-CC
TCTGTCTGCCCATGCGGTGATTGGTTTTCCAGTTTCGGTATTTCTGTTAGGCTCCTTTTTGTAATCAT----CAAGGTTT
T--CATATGGAAATCCTACAAGACTTGCTGTCTTTCTTGCATA------------AATAAATTATACGTACTAGTTCCTT
GGACACTGACT----CTTCTTGTTGAGT----TTTATA------------CCCTCCCTGTCAATCTCCCTGCTGACAGAC
GCCGTGTTGTGTTGCAGGAGGGAGTACAGCAGCTTGTCCTTGGTCTGTACATCATCAGGGGTGATAACATGTGCGT---G
CCCCTTTCACTTCTGTACATG----TATGCATTAACTGAATTTTT-------------TGTATGTATGTATGTA------
--AAAATGGAGTTGTTTGTTGACTGCGTATGCAGAGGCGTGGTGGGTGAGGTGGACGAGGAGCTGGACGCGGCGCTGGAC
ATGTCGAAGCTGAGAGCGCAGCCCCTCAAGCCAGTCATCCACTGAAGATGATGAAATGTTCTATCGATCTGATCCTGATC
GCGCAAGCCGGAGCTGATGTTGCTCAGTCAATCTGTACCGTAGGTTAATCGATTGATCGCTCACTCATATCTCATATCTC
ATATCATGGACCCTTGTATGATGAAAAAAAACAGGGTTTGCTGCGTCGATGGACCGGTCATGTTCTTGTATGAG--AGAG
TGATACATGCATCTCTGTGCACGTAAGTAATGAATGAATGA------------ATGAAGTAGGCAATTG-ATGTTGGAAG
CTACATTGATATTATGATGATCCATTTAGTTGGCAGCAGAGAAGAGAAATCGCC---------CAAAGGAAATTGAAATC
GATTTTTTACACAGGTACTCCGTAGTAAATATACACTATGTATGTGTGTAGATGATACACATTT----GCATTGCAATGC
ATTGCATGTGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGGGTAATATATAATACAGTAGAGCAGATATCTAGATA
GATAGAAA---------------AGGTAGGTAAAAAAAGGTGGATGATGGTGG------TCCGGCT------------CC
GGTGGTGGTTCAGGAGGGGTTGGAGGCGCCGGCGGTGGTGGCGTTGGGCCTAACGGCGCTGTAGTTGCAGGAGATGAAGA
ACTGGCCCTGGCGGGGGCCGGTGAGGCAGGGGGCGCGGCCGCAGCCGACGTAGTGGTACGTCTTCTCGATCATGATGACG
AAGTGGCCGCAGTCGCGGAAGTCGTGGCCGGAGGTGCAGTGCTTGGTGCCCTTCTCGTAGATGTACTCCTCCCTCTCCCA
GCTGCACAGCGCGTCCTCCGCGGTGCCGTTGTTGCCCACGAAGAAGCACTCGCCGTAGCCCAGCGGATGGGCCTGCGGCG
AGTGCCGGGCCTGGTCGCAGTCCTGCTGTATCTGCGCCGCCCACCGCCGCGCGTACAAGGCCAGCGTCTTGTCCCACGCC
AGCGTCGGCGCGTCATACTTGGCGCGCACCTTGTTGTGCTCGTTCACGAACTCGCGGGACATGCCCTTGTAGAACCCCGG
CCCC
>SNPs
---------------------------------------------------------------------S--S--SSSS-
SSSSSSS---------------------------------------------------------------------S---
SS---------S-------S-S--------S--S----------------------------------------------
------SSSS-----------------S----------------------------------------------------
----------S---------S-----------------S------------------SS----------------SSSSS
SSS-----------------------------------------------------------------------------
-------------------------------------------------------------------------SS--SSS
S-SSSSSS-SSS--SSS-SSSSSSSSS--S----S----S---------SSS---SS-----------------------
--------------------S-----------------------------------------------------------
------------------------------------------------------------------S---S--------S
-SSSSSSSSSSSSS---------S-------S---SS-S-------------------------S---------------
---------------S--------SSS--SS---S-SS-S-------------------------------------SSS
SSSS-SS-S------------------------S--SSSS-SSSSS-SSSSSSSSSSSSSS-----S-S-----------
--S------------SSSSSSSSSSSSSSSSSSSSSSSS--S-S-----S---S--S--------------S--------
------------------------------------S-SS----------------------------------------
---------------------------------S--S-------------------------------------------
---------S------SS------------------SS----S-S-SS--------------------------------
-S-----------S----SS-SSSSSSS-SSS-------------------S-----S----------------------
------------------SSSSSSS-------------------------------------------------------
-----------------------------S---S-----------------SS--------------S------------
-S---S--------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
SSSS-SSSS--SSS--SSSSS-SSS-SSSSS----S-----------------------------SSS-------S---S
-S-S--SSSS-S-----------------------------S---S----------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
---------------------------------------S--S---S---------------S-SS-SS-----------
--S-S--SSS--SS-SS--SSSSSSSSS-S-SSSSS-SSSSS-SSS-SSS-SS-SSSSSSSSSSS-SSS--SSSSS--S-
SSS-SSSS----SS-SSSSSS--SSSS-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S---------S---------------S-----------------
------S-SSS-SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS------S---------------------------------------S-SS-------
-------SSSSS----------------------------SSS-------------------------------------
--S----------------------------------S--------S---------------------SSSS--------
-------------------------------------------SSSSSSSS-----------------------------
-----------SSSS----------------------SSSSSSSSSSSSS------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S-SSSSSSSSSSSSS----------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
--------------------------------SS----------------------------------------------
--------------------S-----------------------------------------------SS-----S----
-------------S------------------------------------S---SSSSSSS-------------S-----
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
-------------------S----------------------------------------------SSSSSSSSSSSS--
-----S--------S-------------SS-----------S--------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S-----------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1019
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GCCAGAAAGGAGACACACGA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_2999
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TATACCCTCCCTCCCTCCCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_1160
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TCTATTCGATTCGACCGCCG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_3006
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCCCTCCCTCCCTGTCAATC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>forward_2143
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CCTACCTCTGCTTCACCCAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>reverse_4188
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------ATTGTTGCCCACGAAGAAGC---------------------------------
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----
