Multiple sequence alignment - TraesCS1B01G448200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G448200 chr1B 100.000 2741 0 0 1 2741 667619091 667621831 0.000000e+00 5062.0
1 TraesCS1B01G448200 chr1B 89.231 455 11 15 350 780 657403686 657403246 4.020000e-148 534.0
2 TraesCS1B01G448200 chr1A 88.073 2398 160 57 142 2458 575671748 575674100 0.000000e+00 2728.0
3 TraesCS1B01G448200 chr1A 93.860 114 7 0 1 114 575671330 575671443 3.630000e-39 172.0
4 TraesCS1B01G448200 chr1D 87.795 2163 90 80 1 2030 479357858 479359979 0.000000e+00 2372.0
5 TraesCS1B01G448200 chr1D 83.568 426 56 9 2040 2458 479360063 479360481 1.190000e-103 387.0
6 TraesCS1B01G448200 chr1D 75.781 128 30 1 2460 2586 376873592 376873719 2.280000e-06 63.9
7 TraesCS1B01G448200 chr2A 86.310 168 19 4 2455 2619 421251714 421251880 2.170000e-41 180.0
8 TraesCS1B01G448200 chr5B 91.304 46 3 1 2621 2665 405792959 405793004 8.200000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G448200 chr1B 667619091 667621831 2740 False 5062.0 5062 100.0000 1 2741 1 chr1B.!!$F1 2740
1 TraesCS1B01G448200 chr1A 575671330 575674100 2770 False 1450.0 2728 90.9665 1 2458 2 chr1A.!!$F1 2457
2 TraesCS1B01G448200 chr1D 479357858 479360481 2623 False 1379.5 2372 85.6815 1 2458 2 chr1D.!!$F2 2457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 1168 0.454957 CAAGTTTTGCGCATCTCGGG 60.455 55.0 12.75 0.0 38.94 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2601 0.032615 ACCACAAGTTTCCCCAAGCA 60.033 50.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.190849 CCGTCACATGGCTCGCTG 61.191 66.667 0.00 0.00 0.00 5.18
117 377 1.610102 GGCAGTGAGTGAGATGTTGCT 60.610 52.381 0.00 0.00 0.00 3.91
134 394 5.962433 TGTTGCTACTGTCAAGATACTACC 58.038 41.667 0.00 0.00 0.00 3.18
162 440 1.294780 GGCTGTCAGTGTCAGGGAG 59.705 63.158 17.35 0.00 33.98 4.30
348 645 4.593864 GCCTCCTCCGTGATCGCC 62.594 72.222 0.00 0.00 35.54 5.54
359 656 1.002468 CGTGATCGCCCATTTGATTCC 60.002 52.381 0.00 0.00 0.00 3.01
366 663 1.961435 GCCCATTTGATTCCTGAGGCA 60.961 52.381 0.00 0.00 39.01 4.75
368 665 2.167075 CCCATTTGATTCCTGAGGCAAC 59.833 50.000 0.00 0.00 0.00 4.17
369 666 2.159338 CCATTTGATTCCTGAGGCAACG 60.159 50.000 0.00 0.00 46.39 4.10
370 667 2.270352 TTTGATTCCTGAGGCAACGT 57.730 45.000 0.00 0.00 46.39 3.99
371 668 1.522668 TTGATTCCTGAGGCAACGTG 58.477 50.000 0.00 0.00 46.39 4.49
444 759 4.173924 GCCTCTGCCCCTCTGCTC 62.174 72.222 0.00 0.00 0.00 4.26
467 782 0.465097 GCAGTCACCCATCCATCCAG 60.465 60.000 0.00 0.00 0.00 3.86
478 793 3.461773 CATCCAGCCTCCCGTCGT 61.462 66.667 0.00 0.00 0.00 4.34
479 794 3.148279 ATCCAGCCTCCCGTCGTC 61.148 66.667 0.00 0.00 0.00 4.20
506 838 2.359230 AAGCCGAGCCAAGACTGC 60.359 61.111 0.00 0.00 0.00 4.40
764 1128 1.000060 GCAAAGCAAAGCACCAGATGA 60.000 47.619 0.00 0.00 0.00 2.92
782 1146 6.489022 CCAGATGAGATGGATGCAAATCTAAA 59.511 38.462 9.23 3.46 40.51 1.85
783 1147 7.013942 CCAGATGAGATGGATGCAAATCTAAAA 59.986 37.037 9.23 1.53 40.51 1.52
804 1168 0.454957 CAAGTTTTGCGCATCTCGGG 60.455 55.000 12.75 0.00 38.94 5.14
829 1193 2.263077 CTATAAATCCTAGCTGCCGCG 58.737 52.381 0.00 0.00 42.32 6.46
940 1313 3.445096 AGCAGCTTCTCTTCTCTTCTCTC 59.555 47.826 0.00 0.00 0.00 3.20
954 1327 7.022055 TCTCTTCTCTCTAAATAACAGAGCG 57.978 40.000 0.00 0.00 39.55 5.03
955 1328 5.583495 TCTTCTCTCTAAATAACAGAGCGC 58.417 41.667 0.00 0.00 39.55 5.92
956 1329 4.308899 TCTCTCTAAATAACAGAGCGCC 57.691 45.455 2.29 0.00 39.55 6.53
957 1330 3.068307 TCTCTCTAAATAACAGAGCGCCC 59.932 47.826 2.29 0.00 39.55 6.13
1122 1495 2.352032 CGTCACCACCCTCTCTCCC 61.352 68.421 0.00 0.00 0.00 4.30
1152 1525 3.077556 TCCTCTGCTTCCTCGGGC 61.078 66.667 0.00 0.00 0.00 6.13
1155 1528 2.283894 TCTGCTTCCTCGGGCTCA 60.284 61.111 0.00 0.00 0.00 4.26
1413 1799 3.511595 ATGCACCCTCGCGCATTG 61.512 61.111 8.75 0.00 46.49 2.82
1416 1802 2.434884 CACCCTCGCGCATTGTCT 60.435 61.111 8.75 0.00 0.00 3.41
1425 1811 1.726791 CGCGCATTGTCTACTTTGTCT 59.273 47.619 8.75 0.00 0.00 3.41
1426 1812 2.222596 CGCGCATTGTCTACTTTGTCTC 60.223 50.000 8.75 0.00 0.00 3.36
1441 1827 0.095417 GTCTCCGCGTTCTTGCATTC 59.905 55.000 4.92 0.00 34.15 2.67
1454 1840 4.124970 TCTTGCATTCCATTGATCTCTCG 58.875 43.478 0.00 0.00 0.00 4.04
1742 2150 2.872370 CGTGTACCAGTACAACTAGCC 58.128 52.381 12.03 0.00 46.33 3.93
1943 2354 7.707893 AGCCTGCAAAACATATGAATTATGAAC 59.292 33.333 10.38 0.00 40.22 3.18
2016 2437 0.607489 GATGCGCCTGGGCTATGAAT 60.607 55.000 4.18 0.00 39.32 2.57
2035 2456 9.273016 CTATGAATTTCGTCCCACAATATAACT 57.727 33.333 0.00 0.00 0.00 2.24
2036 2531 7.315247 TGAATTTCGTCCCACAATATAACTG 57.685 36.000 0.00 0.00 0.00 3.16
2041 2536 5.172934 TCGTCCCACAATATAACTGACAAC 58.827 41.667 0.00 0.00 0.00 3.32
2104 2599 1.613437 CGTTGTTTTGGCCCTGATCTT 59.387 47.619 0.00 0.00 0.00 2.40
2106 2601 2.365293 GTTGTTTTGGCCCTGATCTTGT 59.635 45.455 0.00 0.00 0.00 3.16
2107 2602 1.962807 TGTTTTGGCCCTGATCTTGTG 59.037 47.619 0.00 0.00 0.00 3.33
2108 2603 0.968405 TTTTGGCCCTGATCTTGTGC 59.032 50.000 0.00 0.00 0.00 4.57
2109 2604 0.112995 TTTGGCCCTGATCTTGTGCT 59.887 50.000 0.00 0.00 0.00 4.40
2110 2605 0.112995 TTGGCCCTGATCTTGTGCTT 59.887 50.000 0.00 0.00 0.00 3.91
2118 2613 2.229784 CTGATCTTGTGCTTGGGGAAAC 59.770 50.000 0.00 0.00 0.00 2.78
2121 2616 2.031120 TCTTGTGCTTGGGGAAACTTG 58.969 47.619 0.00 0.00 0.00 3.16
2133 2628 2.222027 GGAAACTTGTGGTCTGACCTG 58.778 52.381 26.03 15.69 39.58 4.00
2146 2645 4.135153 ACCTGCAGACTAGGCGCG 62.135 66.667 17.39 0.00 38.96 6.86
2186 2688 3.009033 CCTCCTTGGAGGTATTGTGTTCA 59.991 47.826 23.92 0.00 36.53 3.18
2198 2700 3.988379 TTGTGTTCATGCTTGAGGAAC 57.012 42.857 2.23 0.00 40.91 3.62
2245 2747 0.248289 GGCTACTACTTTGGGCGTGA 59.752 55.000 0.00 0.00 0.00 4.35
2274 2814 1.070577 GGCGCAATGTACATCATCGTC 60.071 52.381 10.83 10.54 35.48 4.20
2283 2823 1.589993 CATCATCGTCGGCGCTCTT 60.590 57.895 3.52 0.00 38.14 2.85
2307 2847 2.372264 TGACGACGCCTTATCTAGGTT 58.628 47.619 0.00 0.00 46.61 3.50
2336 2876 1.368209 CTGCCATGCACTTGCCAAA 59.632 52.632 0.00 0.00 41.18 3.28
2347 2887 3.737774 GCACTTGCCAAATTTCTCTTGAC 59.262 43.478 0.00 0.00 34.31 3.18
2348 2888 4.737352 GCACTTGCCAAATTTCTCTTGACA 60.737 41.667 0.00 0.00 34.31 3.58
2350 2890 3.624326 TGCCAAATTTCTCTTGACACG 57.376 42.857 0.00 0.00 0.00 4.49
2357 2897 6.316140 CCAAATTTCTCTTGACACGATGGATA 59.684 38.462 0.00 0.00 0.00 2.59
2364 2905 3.254093 TGACACGATGGATAGGGGTAT 57.746 47.619 0.00 0.00 0.00 2.73
2369 2910 2.637872 ACGATGGATAGGGGTATGTTGG 59.362 50.000 0.00 0.00 0.00 3.77
2375 2916 4.228824 GGATAGGGGTATGTTGGTCTGTA 58.771 47.826 0.00 0.00 0.00 2.74
2378 2919 6.183361 GGATAGGGGTATGTTGGTCTGTATTT 60.183 42.308 0.00 0.00 0.00 1.40
2391 2932 4.182339 GTCTGTATTTTCCTCGGGTCTTC 58.818 47.826 0.00 0.00 0.00 2.87
2393 2934 5.126707 GTCTGTATTTTCCTCGGGTCTTCTA 59.873 44.000 0.00 0.00 0.00 2.10
2397 2938 8.258850 TGTATTTTCCTCGGGTCTTCTAATAT 57.741 34.615 0.00 0.00 0.00 1.28
2398 2939 8.365647 TGTATTTTCCTCGGGTCTTCTAATATC 58.634 37.037 0.00 0.00 0.00 1.63
2399 2940 5.449107 TTTCCTCGGGTCTTCTAATATCG 57.551 43.478 0.00 0.00 0.00 2.92
2400 2941 4.096190 TCCTCGGGTCTTCTAATATCGT 57.904 45.455 0.00 0.00 0.00 3.73
2401 2942 5.233083 TCCTCGGGTCTTCTAATATCGTA 57.767 43.478 0.00 0.00 0.00 3.43
2402 2943 5.243981 TCCTCGGGTCTTCTAATATCGTAG 58.756 45.833 0.00 0.00 0.00 3.51
2403 2944 5.012458 TCCTCGGGTCTTCTAATATCGTAGA 59.988 44.000 0.00 0.00 45.75 2.59
2404 2945 5.352016 CCTCGGGTCTTCTAATATCGTAGAG 59.648 48.000 0.00 0.00 43.63 2.43
2405 2946 5.243981 TCGGGTCTTCTAATATCGTAGAGG 58.756 45.833 0.00 0.00 43.63 3.69
2406 2947 5.002516 CGGGTCTTCTAATATCGTAGAGGT 58.997 45.833 0.00 0.00 43.63 3.85
2407 2948 5.122082 CGGGTCTTCTAATATCGTAGAGGTC 59.878 48.000 0.00 0.00 43.63 3.85
2408 2949 6.240145 GGGTCTTCTAATATCGTAGAGGTCT 58.760 44.000 0.00 0.00 43.63 3.85
2409 2950 6.716173 GGGTCTTCTAATATCGTAGAGGTCTT 59.284 42.308 0.00 0.00 43.63 3.01
2410 2951 7.231115 GGGTCTTCTAATATCGTAGAGGTCTTT 59.769 40.741 0.00 0.00 43.63 2.52
2411 2952 8.077386 GGTCTTCTAATATCGTAGAGGTCTTTG 58.923 40.741 0.00 0.00 43.63 2.77
2412 2953 8.838365 GTCTTCTAATATCGTAGAGGTCTTTGA 58.162 37.037 0.00 0.00 43.63 2.69
2413 2954 8.838365 TCTTCTAATATCGTAGAGGTCTTTGAC 58.162 37.037 0.00 0.00 43.63 3.18
2414 2955 7.187244 TCTAATATCGTAGAGGTCTTTGACG 57.813 40.000 0.00 0.00 43.63 4.35
2415 2956 5.831702 AATATCGTAGAGGTCTTTGACGT 57.168 39.130 0.00 0.00 43.63 4.34
2416 2957 5.831702 ATATCGTAGAGGTCTTTGACGTT 57.168 39.130 0.00 0.00 43.63 3.99
2417 2958 3.278367 TCGTAGAGGTCTTTGACGTTG 57.722 47.619 0.00 0.00 35.14 4.10
2418 2959 2.030540 TCGTAGAGGTCTTTGACGTTGG 60.031 50.000 0.00 0.00 35.14 3.77
2419 2960 2.685100 GTAGAGGTCTTTGACGTTGGG 58.315 52.381 0.00 0.00 32.65 4.12
2420 2961 1.129058 AGAGGTCTTTGACGTTGGGT 58.871 50.000 0.00 0.00 32.65 4.51
2421 2962 1.202651 AGAGGTCTTTGACGTTGGGTG 60.203 52.381 0.00 0.00 32.65 4.61
2422 2963 0.544697 AGGTCTTTGACGTTGGGTGT 59.455 50.000 0.00 0.00 32.65 4.16
2423 2964 0.661020 GGTCTTTGACGTTGGGTGTG 59.339 55.000 0.00 0.00 32.65 3.82
2424 2965 0.661020 GTCTTTGACGTTGGGTGTGG 59.339 55.000 0.00 0.00 0.00 4.17
2425 2966 1.098712 TCTTTGACGTTGGGTGTGGC 61.099 55.000 0.00 0.00 0.00 5.01
2426 2967 2.387125 CTTTGACGTTGGGTGTGGCG 62.387 60.000 0.00 0.00 0.00 5.69
2432 2973 4.514585 TTGGGTGTGGCGCTGGTT 62.515 61.111 7.64 0.00 0.00 3.67
2433 2974 4.514585 TGGGTGTGGCGCTGGTTT 62.515 61.111 7.64 0.00 0.00 3.27
2434 2975 3.977244 GGGTGTGGCGCTGGTTTG 61.977 66.667 7.64 0.00 0.00 2.93
2435 2976 3.977244 GGTGTGGCGCTGGTTTGG 61.977 66.667 7.64 0.00 0.00 3.28
2436 2977 3.216292 GTGTGGCGCTGGTTTGGT 61.216 61.111 7.64 0.00 0.00 3.67
2437 2978 2.441164 TGTGGCGCTGGTTTGGTT 60.441 55.556 7.64 0.00 0.00 3.67
2438 2979 2.027460 GTGGCGCTGGTTTGGTTG 59.973 61.111 7.64 0.00 0.00 3.77
2439 2980 3.910490 TGGCGCTGGTTTGGTTGC 61.910 61.111 7.64 0.00 0.00 4.17
2440 2981 3.605664 GGCGCTGGTTTGGTTGCT 61.606 61.111 7.64 0.00 0.00 3.91
2441 2982 2.355009 GCGCTGGTTTGGTTGCTG 60.355 61.111 0.00 0.00 0.00 4.41
2442 2983 3.119193 CGCTGGTTTGGTTGCTGT 58.881 55.556 0.00 0.00 0.00 4.40
2443 2984 1.791103 GCGCTGGTTTGGTTGCTGTA 61.791 55.000 0.00 0.00 0.00 2.74
2444 2985 0.881118 CGCTGGTTTGGTTGCTGTAT 59.119 50.000 0.00 0.00 0.00 2.29
2445 2986 1.401409 CGCTGGTTTGGTTGCTGTATG 60.401 52.381 0.00 0.00 0.00 2.39
2446 2987 1.067635 GCTGGTTTGGTTGCTGTATGG 60.068 52.381 0.00 0.00 0.00 2.74
2447 2988 2.238521 CTGGTTTGGTTGCTGTATGGT 58.761 47.619 0.00 0.00 0.00 3.55
2448 2989 2.627699 CTGGTTTGGTTGCTGTATGGTT 59.372 45.455 0.00 0.00 0.00 3.67
2449 2990 3.034635 TGGTTTGGTTGCTGTATGGTTT 58.965 40.909 0.00 0.00 0.00 3.27
2450 2991 3.181471 TGGTTTGGTTGCTGTATGGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
2451 2992 2.799978 GTTTGGTTGCTGTATGGTTTGC 59.200 45.455 0.00 0.00 0.00 3.68
2452 2993 0.965439 TGGTTGCTGTATGGTTTGCC 59.035 50.000 0.00 0.00 0.00 4.52
2453 2994 1.256812 GGTTGCTGTATGGTTTGCCT 58.743 50.000 0.00 0.00 35.27 4.75
2454 2995 1.618343 GGTTGCTGTATGGTTTGCCTT 59.382 47.619 0.00 0.00 35.27 4.35
2455 2996 2.352715 GGTTGCTGTATGGTTTGCCTTC 60.353 50.000 0.00 0.00 35.27 3.46
2456 2997 2.284754 TGCTGTATGGTTTGCCTTCA 57.715 45.000 0.00 0.00 35.27 3.02
2457 2998 2.806434 TGCTGTATGGTTTGCCTTCAT 58.194 42.857 0.00 0.00 35.27 2.57
2458 2999 3.961849 TGCTGTATGGTTTGCCTTCATA 58.038 40.909 0.00 0.00 35.27 2.15
2464 3005 7.416213 GCTGTATGGTTTGCCTTCATATTGTAA 60.416 37.037 0.00 0.00 35.27 2.41
2469 3010 6.071616 TGGTTTGCCTTCATATTGTAAAGGTC 60.072 38.462 2.64 0.00 41.37 3.85
2500 3041 0.393132 TTGTGACGCTGGTTGGTTGA 60.393 50.000 0.00 0.00 0.00 3.18
2504 3045 1.621317 TGACGCTGGTTGGTTGATCTA 59.379 47.619 0.00 0.00 0.00 1.98
2513 3054 3.763897 GGTTGGTTGATCTATGGTTTGCT 59.236 43.478 0.00 0.00 0.00 3.91
2518 3059 5.716228 TGGTTGATCTATGGTTTGCTTCATT 59.284 36.000 0.00 0.00 0.00 2.57
2519 3060 6.038356 GGTTGATCTATGGTTTGCTTCATTG 58.962 40.000 0.00 0.00 0.00 2.82
2520 3061 6.350445 GGTTGATCTATGGTTTGCTTCATTGT 60.350 38.462 0.00 0.00 0.00 2.71
2521 3062 6.441093 TGATCTATGGTTTGCTTCATTGTC 57.559 37.500 0.00 0.00 0.00 3.18
2522 3063 5.945191 TGATCTATGGTTTGCTTCATTGTCA 59.055 36.000 0.00 0.00 0.00 3.58
2523 3064 6.604396 TGATCTATGGTTTGCTTCATTGTCAT 59.396 34.615 0.00 0.00 0.00 3.06
2524 3065 6.839124 TCTATGGTTTGCTTCATTGTCATT 57.161 33.333 0.00 0.00 0.00 2.57
2525 3066 6.623486 TCTATGGTTTGCTTCATTGTCATTG 58.377 36.000 0.00 0.00 0.00 2.82
2526 3067 3.992643 TGGTTTGCTTCATTGTCATTGG 58.007 40.909 0.00 0.00 0.00 3.16
2527 3068 2.738314 GGTTTGCTTCATTGTCATTGGC 59.262 45.455 0.00 0.00 0.00 4.52
2528 3069 3.391965 GTTTGCTTCATTGTCATTGGCA 58.608 40.909 0.00 0.00 0.00 4.92
2529 3070 3.965379 TTGCTTCATTGTCATTGGCAT 57.035 38.095 0.00 0.00 0.00 4.40
2530 3071 3.239587 TGCTTCATTGTCATTGGCATG 57.760 42.857 0.00 0.00 0.00 4.06
2531 3072 2.826725 TGCTTCATTGTCATTGGCATGA 59.173 40.909 0.00 0.00 37.05 3.07
2532 3073 3.119280 TGCTTCATTGTCATTGGCATGAG 60.119 43.478 0.00 0.00 40.28 2.90
2533 3074 3.737047 GCTTCATTGTCATTGGCATGAGG 60.737 47.826 0.00 0.81 40.28 3.86
2534 3075 3.090210 TCATTGTCATTGGCATGAGGT 57.910 42.857 0.00 0.00 40.28 3.85
2535 3076 3.433343 TCATTGTCATTGGCATGAGGTT 58.567 40.909 0.00 0.00 40.28 3.50
2536 3077 3.193903 TCATTGTCATTGGCATGAGGTTG 59.806 43.478 0.00 0.00 40.28 3.77
2537 3078 1.548081 TGTCATTGGCATGAGGTTGG 58.452 50.000 0.00 0.00 40.28 3.77
2538 3079 1.203038 TGTCATTGGCATGAGGTTGGT 60.203 47.619 0.00 0.00 40.28 3.67
2539 3080 1.474077 GTCATTGGCATGAGGTTGGTC 59.526 52.381 0.00 0.00 40.28 4.02
2540 3081 1.355381 TCATTGGCATGAGGTTGGTCT 59.645 47.619 0.00 0.00 34.22 3.85
2541 3082 2.575735 TCATTGGCATGAGGTTGGTCTA 59.424 45.455 0.00 0.00 34.22 2.59
2542 3083 2.787473 TTGGCATGAGGTTGGTCTAG 57.213 50.000 0.00 0.00 0.00 2.43
2543 3084 1.951209 TGGCATGAGGTTGGTCTAGA 58.049 50.000 0.00 0.00 0.00 2.43
2544 3085 2.481441 TGGCATGAGGTTGGTCTAGAT 58.519 47.619 0.00 0.00 0.00 1.98
2545 3086 2.171237 TGGCATGAGGTTGGTCTAGATG 59.829 50.000 0.00 0.00 0.00 2.90
2546 3087 2.171448 GGCATGAGGTTGGTCTAGATGT 59.829 50.000 0.00 0.00 0.00 3.06
2547 3088 3.370953 GGCATGAGGTTGGTCTAGATGTT 60.371 47.826 0.00 0.00 0.00 2.71
2548 3089 3.624861 GCATGAGGTTGGTCTAGATGTTG 59.375 47.826 0.00 0.00 0.00 3.33
2549 3090 3.334583 TGAGGTTGGTCTAGATGTTGC 57.665 47.619 0.00 0.00 0.00 4.17
2550 3091 2.906389 TGAGGTTGGTCTAGATGTTGCT 59.094 45.455 0.00 0.00 0.00 3.91
2551 3092 3.327757 TGAGGTTGGTCTAGATGTTGCTT 59.672 43.478 0.00 0.00 0.00 3.91
2552 3093 3.679389 AGGTTGGTCTAGATGTTGCTTG 58.321 45.455 0.00 0.00 0.00 4.01
2553 3094 3.073062 AGGTTGGTCTAGATGTTGCTTGT 59.927 43.478 0.00 0.00 0.00 3.16
2554 3095 3.437049 GGTTGGTCTAGATGTTGCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
2555 3096 4.319177 GTTGGTCTAGATGTTGCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
2556 3097 4.623932 TGGTCTAGATGTTGCTTGTCTT 57.376 40.909 0.00 0.00 0.00 3.01
2557 3098 4.318332 TGGTCTAGATGTTGCTTGTCTTG 58.682 43.478 0.00 0.00 0.00 3.02
2558 3099 4.202357 TGGTCTAGATGTTGCTTGTCTTGT 60.202 41.667 0.00 0.00 0.00 3.16
2559 3100 4.153117 GGTCTAGATGTTGCTTGTCTTGTG 59.847 45.833 0.00 0.00 0.00 3.33
2560 3101 4.153117 GTCTAGATGTTGCTTGTCTTGTGG 59.847 45.833 0.00 0.00 0.00 4.17
2561 3102 2.936202 AGATGTTGCTTGTCTTGTGGT 58.064 42.857 0.00 0.00 0.00 4.16
2562 3103 4.085357 AGATGTTGCTTGTCTTGTGGTA 57.915 40.909 0.00 0.00 0.00 3.25
2563 3104 4.655963 AGATGTTGCTTGTCTTGTGGTAT 58.344 39.130 0.00 0.00 0.00 2.73
2564 3105 4.456911 AGATGTTGCTTGTCTTGTGGTATG 59.543 41.667 0.00 0.00 0.00 2.39
2565 3106 3.814625 TGTTGCTTGTCTTGTGGTATGA 58.185 40.909 0.00 0.00 0.00 2.15
2566 3107 4.397420 TGTTGCTTGTCTTGTGGTATGAT 58.603 39.130 0.00 0.00 0.00 2.45
2567 3108 4.216042 TGTTGCTTGTCTTGTGGTATGATG 59.784 41.667 0.00 0.00 0.00 3.07
2568 3109 4.019792 TGCTTGTCTTGTGGTATGATGT 57.980 40.909 0.00 0.00 0.00 3.06
2569 3110 3.752747 TGCTTGTCTTGTGGTATGATGTG 59.247 43.478 0.00 0.00 0.00 3.21
2570 3111 3.127548 GCTTGTCTTGTGGTATGATGTGG 59.872 47.826 0.00 0.00 0.00 4.17
2571 3112 4.326826 CTTGTCTTGTGGTATGATGTGGT 58.673 43.478 0.00 0.00 0.00 4.16
2572 3113 3.673902 TGTCTTGTGGTATGATGTGGTG 58.326 45.455 0.00 0.00 0.00 4.17
2573 3114 3.072330 TGTCTTGTGGTATGATGTGGTGT 59.928 43.478 0.00 0.00 0.00 4.16
2574 3115 3.436704 GTCTTGTGGTATGATGTGGTGTG 59.563 47.826 0.00 0.00 0.00 3.82
2575 3116 3.072330 TCTTGTGGTATGATGTGGTGTGT 59.928 43.478 0.00 0.00 0.00 3.72
2576 3117 2.777094 TGTGGTATGATGTGGTGTGTG 58.223 47.619 0.00 0.00 0.00 3.82
2577 3118 2.083774 GTGGTATGATGTGGTGTGTGG 58.916 52.381 0.00 0.00 0.00 4.17
2578 3119 1.702401 TGGTATGATGTGGTGTGTGGT 59.298 47.619 0.00 0.00 0.00 4.16
2579 3120 2.107378 TGGTATGATGTGGTGTGTGGTT 59.893 45.455 0.00 0.00 0.00 3.67
2580 3121 2.487762 GGTATGATGTGGTGTGTGGTTG 59.512 50.000 0.00 0.00 0.00 3.77
2581 3122 0.961019 ATGATGTGGTGTGTGGTTGC 59.039 50.000 0.00 0.00 0.00 4.17
2582 3123 0.106769 TGATGTGGTGTGTGGTTGCT 60.107 50.000 0.00 0.00 0.00 3.91
2583 3124 1.141858 TGATGTGGTGTGTGGTTGCTA 59.858 47.619 0.00 0.00 0.00 3.49
2584 3125 2.226330 GATGTGGTGTGTGGTTGCTAA 58.774 47.619 0.00 0.00 0.00 3.09
2585 3126 2.356665 TGTGGTGTGTGGTTGCTAAT 57.643 45.000 0.00 0.00 0.00 1.73
2586 3127 2.660572 TGTGGTGTGTGGTTGCTAATT 58.339 42.857 0.00 0.00 0.00 1.40
2587 3128 2.621055 TGTGGTGTGTGGTTGCTAATTC 59.379 45.455 0.00 0.00 0.00 2.17
2588 3129 2.884639 GTGGTGTGTGGTTGCTAATTCT 59.115 45.455 0.00 0.00 0.00 2.40
2589 3130 4.069304 GTGGTGTGTGGTTGCTAATTCTA 58.931 43.478 0.00 0.00 0.00 2.10
2590 3131 4.154195 GTGGTGTGTGGTTGCTAATTCTAG 59.846 45.833 0.00 0.00 0.00 2.43
2591 3132 4.202419 TGGTGTGTGGTTGCTAATTCTAGT 60.202 41.667 0.00 0.00 0.00 2.57
2592 3133 4.154195 GGTGTGTGGTTGCTAATTCTAGTG 59.846 45.833 0.00 0.00 0.00 2.74
2593 3134 4.755123 GTGTGTGGTTGCTAATTCTAGTGT 59.245 41.667 0.00 0.00 0.00 3.55
2594 3135 5.238650 GTGTGTGGTTGCTAATTCTAGTGTT 59.761 40.000 0.00 0.00 0.00 3.32
2595 3136 6.425721 GTGTGTGGTTGCTAATTCTAGTGTTA 59.574 38.462 0.00 0.00 0.00 2.41
2596 3137 6.649141 TGTGTGGTTGCTAATTCTAGTGTTAG 59.351 38.462 10.56 10.56 0.00 2.34
2604 3145 7.515957 GCTAATTCTAGTGTTAGCGTTGTAA 57.484 36.000 18.86 0.00 42.12 2.41
2605 3146 7.389479 GCTAATTCTAGTGTTAGCGTTGTAAC 58.611 38.462 18.86 0.00 42.12 2.50
2629 3170 3.489180 CGAAAGGCGTCTCTTCTCTAA 57.511 47.619 0.00 0.00 34.64 2.10
2630 3171 4.035278 CGAAAGGCGTCTCTTCTCTAAT 57.965 45.455 0.00 0.00 34.64 1.73
2631 3172 3.794028 CGAAAGGCGTCTCTTCTCTAATG 59.206 47.826 0.00 0.00 34.64 1.90
2632 3173 2.880963 AGGCGTCTCTTCTCTAATGC 57.119 50.000 0.00 0.00 0.00 3.56
2633 3174 2.103373 AGGCGTCTCTTCTCTAATGCA 58.897 47.619 0.00 0.00 0.00 3.96
2634 3175 2.497675 AGGCGTCTCTTCTCTAATGCAA 59.502 45.455 0.00 0.00 0.00 4.08
2635 3176 3.133721 AGGCGTCTCTTCTCTAATGCAAT 59.866 43.478 0.00 0.00 0.00 3.56
2636 3177 3.247173 GGCGTCTCTTCTCTAATGCAATG 59.753 47.826 0.00 0.00 0.00 2.82
2637 3178 4.115516 GCGTCTCTTCTCTAATGCAATGA 58.884 43.478 0.00 0.00 0.00 2.57
2638 3179 4.749099 GCGTCTCTTCTCTAATGCAATGAT 59.251 41.667 0.00 0.00 0.00 2.45
2639 3180 5.923114 GCGTCTCTTCTCTAATGCAATGATA 59.077 40.000 0.00 0.00 0.00 2.15
2640 3181 6.128956 GCGTCTCTTCTCTAATGCAATGATAC 60.129 42.308 0.00 0.00 0.00 2.24
2641 3182 6.920210 CGTCTCTTCTCTAATGCAATGATACA 59.080 38.462 0.00 0.00 0.00 2.29
2642 3183 7.096271 CGTCTCTTCTCTAATGCAATGATACAC 60.096 40.741 0.00 0.00 0.00 2.90
2643 3184 7.708322 GTCTCTTCTCTAATGCAATGATACACA 59.292 37.037 0.00 0.00 0.00 3.72
2644 3185 8.427276 TCTCTTCTCTAATGCAATGATACACAT 58.573 33.333 0.00 0.00 41.45 3.21
2645 3186 8.374327 TCTTCTCTAATGCAATGATACACATG 57.626 34.615 0.00 0.00 39.39 3.21
2646 3187 6.549912 TCTCTAATGCAATGATACACATGC 57.450 37.500 0.00 0.00 39.39 4.06
2647 3188 6.293698 TCTCTAATGCAATGATACACATGCT 58.706 36.000 0.00 0.00 39.39 3.79
2648 3189 6.769341 TCTCTAATGCAATGATACACATGCTT 59.231 34.615 0.00 0.00 39.39 3.91
2649 3190 7.933033 TCTCTAATGCAATGATACACATGCTTA 59.067 33.333 0.00 0.00 39.39 3.09
2650 3191 8.625786 TCTAATGCAATGATACACATGCTTAT 57.374 30.769 0.00 0.00 39.39 1.73
2651 3192 8.508875 TCTAATGCAATGATACACATGCTTATG 58.491 33.333 0.00 0.00 39.39 1.90
2652 3193 4.862350 TGCAATGATACACATGCTTATGC 58.138 39.130 0.00 0.00 39.39 3.14
2653 3194 4.232221 GCAATGATACACATGCTTATGCC 58.768 43.478 0.00 0.00 39.39 4.40
2654 3195 4.801891 CAATGATACACATGCTTATGCCC 58.198 43.478 0.00 0.00 39.39 5.36
2655 3196 3.862877 TGATACACATGCTTATGCCCT 57.137 42.857 0.00 0.00 38.71 5.19
2656 3197 4.169059 TGATACACATGCTTATGCCCTT 57.831 40.909 0.00 0.00 38.71 3.95
2657 3198 4.535781 TGATACACATGCTTATGCCCTTT 58.464 39.130 0.00 0.00 38.71 3.11
2658 3199 4.580167 TGATACACATGCTTATGCCCTTTC 59.420 41.667 0.00 0.00 38.71 2.62
2659 3200 3.091633 ACACATGCTTATGCCCTTTCT 57.908 42.857 0.00 0.00 38.71 2.52
2660 3201 4.235079 ACACATGCTTATGCCCTTTCTA 57.765 40.909 0.00 0.00 38.71 2.10
2661 3202 4.202441 ACACATGCTTATGCCCTTTCTAG 58.798 43.478 0.00 0.00 38.71 2.43
2662 3203 3.567164 CACATGCTTATGCCCTTTCTAGG 59.433 47.826 0.00 0.00 41.60 3.02
2663 3204 3.459598 ACATGCTTATGCCCTTTCTAGGA 59.540 43.478 0.00 0.00 41.76 2.94
2664 3205 4.079787 ACATGCTTATGCCCTTTCTAGGAA 60.080 41.667 0.00 0.00 41.76 3.36
2665 3206 4.796110 TGCTTATGCCCTTTCTAGGAAT 57.204 40.909 0.00 0.00 41.76 3.01
2666 3207 5.129368 TGCTTATGCCCTTTCTAGGAATT 57.871 39.130 0.00 0.00 41.76 2.17
2667 3208 5.133221 TGCTTATGCCCTTTCTAGGAATTC 58.867 41.667 0.00 0.00 41.76 2.17
2668 3209 5.133221 GCTTATGCCCTTTCTAGGAATTCA 58.867 41.667 7.93 0.00 45.05 2.57
2669 3210 5.009110 GCTTATGCCCTTTCTAGGAATTCAC 59.991 44.000 7.93 0.00 45.05 3.18
2670 3211 4.591321 ATGCCCTTTCTAGGAATTCACA 57.409 40.909 7.93 0.00 45.05 3.58
2671 3212 4.380843 TGCCCTTTCTAGGAATTCACAA 57.619 40.909 7.93 0.00 45.05 3.33
2672 3213 4.335416 TGCCCTTTCTAGGAATTCACAAG 58.665 43.478 7.93 1.38 45.05 3.16
2673 3214 4.202567 TGCCCTTTCTAGGAATTCACAAGT 60.203 41.667 7.93 0.00 45.05 3.16
2674 3215 4.767409 GCCCTTTCTAGGAATTCACAAGTT 59.233 41.667 7.93 0.00 45.05 2.66
2675 3216 5.243954 GCCCTTTCTAGGAATTCACAAGTTT 59.756 40.000 7.93 0.00 45.05 2.66
2676 3217 6.239317 GCCCTTTCTAGGAATTCACAAGTTTT 60.239 38.462 7.93 0.00 45.05 2.43
2677 3218 7.039993 GCCCTTTCTAGGAATTCACAAGTTTTA 60.040 37.037 7.93 0.00 45.05 1.52
2678 3219 8.856103 CCCTTTCTAGGAATTCACAAGTTTTAA 58.144 33.333 7.93 0.00 45.05 1.52
2679 3220 9.678941 CCTTTCTAGGAATTCACAAGTTTTAAC 57.321 33.333 7.93 0.00 45.05 2.01
2704 3245 2.397044 TTTTGAGAGGGCAAATGGGT 57.603 45.000 0.00 0.00 37.57 4.51
2705 3246 2.397044 TTTGAGAGGGCAAATGGGTT 57.603 45.000 0.00 0.00 33.16 4.11
2706 3247 2.397044 TTGAGAGGGCAAATGGGTTT 57.603 45.000 0.00 0.00 0.00 3.27
2707 3248 2.397044 TGAGAGGGCAAATGGGTTTT 57.603 45.000 0.00 0.00 0.00 2.43
2708 3249 3.534357 TGAGAGGGCAAATGGGTTTTA 57.466 42.857 0.00 0.00 0.00 1.52
2709 3250 4.059773 TGAGAGGGCAAATGGGTTTTAT 57.940 40.909 0.00 0.00 0.00 1.40
2710 3251 4.424842 TGAGAGGGCAAATGGGTTTTATT 58.575 39.130 0.00 0.00 0.00 1.40
2711 3252 4.466015 TGAGAGGGCAAATGGGTTTTATTC 59.534 41.667 0.00 0.00 0.00 1.75
2712 3253 4.424842 AGAGGGCAAATGGGTTTTATTCA 58.575 39.130 0.00 0.00 0.00 2.57
2713 3254 5.032170 AGAGGGCAAATGGGTTTTATTCAT 58.968 37.500 0.00 0.00 0.00 2.57
2714 3255 6.201591 AGAGGGCAAATGGGTTTTATTCATA 58.798 36.000 0.00 0.00 0.00 2.15
2715 3256 6.671779 AGAGGGCAAATGGGTTTTATTCATAA 59.328 34.615 0.00 0.00 0.00 1.90
2716 3257 6.649155 AGGGCAAATGGGTTTTATTCATAAC 58.351 36.000 0.00 0.00 0.00 1.89
2717 3258 5.820423 GGGCAAATGGGTTTTATTCATAACC 59.180 40.000 0.00 0.00 42.46 2.85
2718 3259 5.522097 GGCAAATGGGTTTTATTCATAACCG 59.478 40.000 0.00 0.00 43.79 4.44
2719 3260 6.103330 GCAAATGGGTTTTATTCATAACCGT 58.897 36.000 0.00 0.00 43.79 4.83
2720 3261 7.259161 GCAAATGGGTTTTATTCATAACCGTA 58.741 34.615 0.00 0.00 43.79 4.02
2721 3262 7.434013 GCAAATGGGTTTTATTCATAACCGTAG 59.566 37.037 0.00 0.00 43.79 3.51
2740 3281 6.446781 CGTAGGAGTACAATCAAGTAGGAA 57.553 41.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.785258 CGCGGTCAAAAGCTAGGC 59.215 61.111 0.00 0.00 0.00 3.93
98 99 1.805869 AGCAACATCTCACTCACTGC 58.194 50.000 0.00 0.00 0.00 4.40
117 377 7.052873 GGAGTACTGGTAGTATCTTGACAGTA 58.947 42.308 0.00 0.00 39.59 2.74
134 394 1.251527 ACTGACAGCCCGGAGTACTG 61.252 60.000 0.73 7.65 37.45 2.74
270 558 0.321671 CGGCCAGGGGTGTCATATAG 59.678 60.000 2.24 0.00 0.00 1.31
348 645 2.159338 CGTTGCCTCAGGAATCAAATGG 60.159 50.000 0.00 0.00 0.00 3.16
359 656 4.374702 GCACGCACGTTGCCTCAG 62.375 66.667 0.00 0.00 41.12 3.35
366 663 2.051076 CATGCAAGCACGCACGTT 60.051 55.556 1.79 0.00 46.56 3.99
368 665 4.764336 CCCATGCAAGCACGCACG 62.764 66.667 1.79 0.00 46.56 5.34
371 668 4.487412 GAGCCCATGCAAGCACGC 62.487 66.667 9.12 0.00 41.13 5.34
444 759 1.976132 ATGGATGGGTGACTGCTCGG 61.976 60.000 0.00 0.00 0.00 4.63
485 800 4.722700 TCTTGGCTCGGCTTGGGC 62.723 66.667 0.00 0.00 37.82 5.36
486 801 2.747855 GTCTTGGCTCGGCTTGGG 60.748 66.667 0.00 0.00 0.00 4.12
506 838 1.153208 GCTCTGCTCCTGTGGATGG 60.153 63.158 0.00 0.00 0.00 3.51
579 933 2.037136 CAGAGGCAAGCCAAGACCG 61.037 63.158 14.40 0.00 38.92 4.79
764 1128 8.302515 ACTTGATTTTAGATTTGCATCCATCT 57.697 30.769 8.25 8.25 34.08 2.90
782 1146 2.414559 CCGAGATGCGCAAAACTTGATT 60.415 45.455 17.11 0.00 39.11 2.57
783 1147 1.131126 CCGAGATGCGCAAAACTTGAT 59.869 47.619 17.11 0.00 39.11 2.57
804 1168 3.339141 GCAGCTAGGATTTATAGGGTGC 58.661 50.000 0.00 0.00 40.07 5.01
829 1193 0.397254 TGAGCTACTGGAGGTAGGCC 60.397 60.000 0.00 0.00 45.83 5.19
940 1313 0.582005 GCGGGCGCTCTGTTATTTAG 59.418 55.000 5.36 0.00 38.26 1.85
955 1328 4.489771 CCACCTAGCTTGGGCGGG 62.490 72.222 18.75 12.42 44.37 6.13
972 1345 1.009389 AGCTTGCGACGTTCTAGTGC 61.009 55.000 0.00 0.00 0.00 4.40
999 1372 0.253160 AGAAGGTGGAGGTGGCCATA 60.253 55.000 9.72 0.00 40.68 2.74
1068 1441 2.494530 CGAGTAGGCAGCCTCCTCC 61.495 68.421 24.63 10.11 33.74 4.30
1152 1525 4.251760 GTGCAGTCCACGAGTGAG 57.748 61.111 4.59 0.00 35.20 3.51
1233 1615 2.126189 GCGGACACGGACTGGTAC 60.126 66.667 0.00 0.00 41.36 3.34
1260 1642 1.972660 GCTGGTGGTAGTAGCAGGGG 61.973 65.000 1.37 0.00 44.23 4.79
1413 1799 1.984297 GAACGCGGAGACAAAGTAGAC 59.016 52.381 12.47 0.00 0.00 2.59
1416 1802 2.400399 CAAGAACGCGGAGACAAAGTA 58.600 47.619 12.47 0.00 0.00 2.24
1425 1811 0.676466 ATGGAATGCAAGAACGCGGA 60.676 50.000 12.47 0.00 33.35 5.54
1426 1812 0.171007 AATGGAATGCAAGAACGCGG 59.829 50.000 12.47 0.00 33.35 6.46
1441 1827 4.092529 CACAAGACAACGAGAGATCAATGG 59.907 45.833 0.00 0.00 0.00 3.16
1473 1881 4.374702 GCGTTGCACAGCGACTGG 62.375 66.667 11.18 2.65 40.50 4.00
1500 1908 1.002544 CGCTCCTCCTTCTTGAACCTT 59.997 52.381 0.00 0.00 0.00 3.50
1943 2354 5.410746 ACATGAGAAACAAGACATGCACTAG 59.589 40.000 0.00 0.00 42.28 2.57
1948 2365 5.522456 TGAAACATGAGAAACAAGACATGC 58.478 37.500 0.00 0.00 42.28 4.06
2004 2425 2.222027 GGGACGAAATTCATAGCCCAG 58.778 52.381 0.00 0.00 34.25 4.45
2016 2437 5.795972 TGTCAGTTATATTGTGGGACGAAA 58.204 37.500 0.00 0.00 0.00 3.46
2035 2456 4.272504 CAGCTTCGGACTTAAAAGTTGTCA 59.727 41.667 0.00 0.00 39.88 3.58
2036 2531 4.510340 TCAGCTTCGGACTTAAAAGTTGTC 59.490 41.667 0.00 0.00 39.88 3.18
2041 2536 4.608445 CGTTGTCAGCTTCGGACTTAAAAG 60.608 45.833 4.51 0.00 36.26 2.27
2097 2592 2.205022 TTCCCCAAGCACAAGATCAG 57.795 50.000 0.00 0.00 0.00 2.90
2104 2599 1.110442 CACAAGTTTCCCCAAGCACA 58.890 50.000 0.00 0.00 0.00 4.57
2106 2601 0.032615 ACCACAAGTTTCCCCAAGCA 60.033 50.000 0.00 0.00 0.00 3.91
2107 2602 0.673985 GACCACAAGTTTCCCCAAGC 59.326 55.000 0.00 0.00 0.00 4.01
2108 2603 1.956477 CAGACCACAAGTTTCCCCAAG 59.044 52.381 0.00 0.00 0.00 3.61
2109 2604 1.566703 TCAGACCACAAGTTTCCCCAA 59.433 47.619 0.00 0.00 0.00 4.12
2110 2605 1.133915 GTCAGACCACAAGTTTCCCCA 60.134 52.381 0.00 0.00 0.00 4.96
2118 2613 0.394192 TCTGCAGGTCAGACCACAAG 59.606 55.000 22.31 14.46 46.34 3.16
2146 2645 2.740714 GAAGCGACGACATGGCACC 61.741 63.158 0.00 0.00 33.70 5.01
2175 2674 5.182001 AGTTCCTCAAGCATGAACACAATAC 59.818 40.000 0.00 0.00 40.58 1.89
2179 2678 3.141398 GAGTTCCTCAAGCATGAACACA 58.859 45.455 0.00 0.00 40.58 3.72
2182 2684 1.734465 CGGAGTTCCTCAAGCATGAAC 59.266 52.381 0.00 0.00 38.88 3.18
2186 2688 1.134280 CCATCGGAGTTCCTCAAGCAT 60.134 52.381 0.00 0.00 31.08 3.79
2209 2711 2.352001 CGATACCGACTCACGCCG 60.352 66.667 0.00 0.00 41.07 6.46
2213 2715 1.307097 AGTAGCCGATACCGACTCAC 58.693 55.000 0.00 0.00 38.22 3.51
2214 2716 2.103771 AGTAGTAGCCGATACCGACTCA 59.896 50.000 0.00 0.00 38.22 3.41
2223 2725 0.104304 CGCCCAAAGTAGTAGCCGAT 59.896 55.000 0.00 0.00 0.00 4.18
2251 2753 0.106769 ATGATGTACATTGCGCCCCA 60.107 50.000 10.30 1.61 35.45 4.96
2274 2814 1.733041 TCGTCAAGAAAGAGCGCCG 60.733 57.895 2.29 0.00 0.00 6.46
2283 2823 3.066342 CCTAGATAAGGCGTCGTCAAGAA 59.934 47.826 0.00 0.00 38.97 2.52
2324 2864 3.384146 TCAAGAGAAATTTGGCAAGTGCA 59.616 39.130 5.52 0.00 44.36 4.57
2325 2865 3.737774 GTCAAGAGAAATTTGGCAAGTGC 59.262 43.478 0.00 0.00 41.14 4.40
2336 2876 5.453903 CCCTATCCATCGTGTCAAGAGAAAT 60.454 44.000 0.00 0.00 0.00 2.17
2347 2887 3.557054 CCAACATACCCCTATCCATCGTG 60.557 52.174 0.00 0.00 0.00 4.35
2348 2888 2.637872 CCAACATACCCCTATCCATCGT 59.362 50.000 0.00 0.00 0.00 3.73
2350 2890 3.910627 AGACCAACATACCCCTATCCATC 59.089 47.826 0.00 0.00 0.00 3.51
2357 2897 5.506708 GAAAATACAGACCAACATACCCCT 58.493 41.667 0.00 0.00 0.00 4.79
2364 2905 3.558321 CCCGAGGAAAATACAGACCAACA 60.558 47.826 0.00 0.00 0.00 3.33
2369 2910 3.889520 AGACCCGAGGAAAATACAGAC 57.110 47.619 0.00 0.00 0.00 3.51
2375 2916 6.041751 ACGATATTAGAAGACCCGAGGAAAAT 59.958 38.462 0.00 0.00 0.00 1.82
2378 2919 4.467769 ACGATATTAGAAGACCCGAGGAA 58.532 43.478 0.00 0.00 0.00 3.36
2391 2932 6.957150 ACGTCAAAGACCTCTACGATATTAG 58.043 40.000 0.00 0.00 37.04 1.73
2393 2934 5.831702 ACGTCAAAGACCTCTACGATATT 57.168 39.130 0.00 0.00 37.04 1.28
2397 2938 2.030540 CCAACGTCAAAGACCTCTACGA 60.031 50.000 0.00 0.00 37.04 3.43
2398 2939 2.325761 CCAACGTCAAAGACCTCTACG 58.674 52.381 0.00 0.00 39.37 3.51
2399 2940 2.036862 ACCCAACGTCAAAGACCTCTAC 59.963 50.000 0.00 0.00 0.00 2.59
2400 2941 2.036733 CACCCAACGTCAAAGACCTCTA 59.963 50.000 0.00 0.00 0.00 2.43
2401 2942 1.129058 ACCCAACGTCAAAGACCTCT 58.871 50.000 0.00 0.00 0.00 3.69
2402 2943 1.226746 CACCCAACGTCAAAGACCTC 58.773 55.000 0.00 0.00 0.00 3.85
2403 2944 0.544697 ACACCCAACGTCAAAGACCT 59.455 50.000 0.00 0.00 0.00 3.85
2404 2945 0.661020 CACACCCAACGTCAAAGACC 59.339 55.000 0.00 0.00 0.00 3.85
2405 2946 0.661020 CCACACCCAACGTCAAAGAC 59.339 55.000 0.00 0.00 0.00 3.01
2406 2947 1.098712 GCCACACCCAACGTCAAAGA 61.099 55.000 0.00 0.00 0.00 2.52
2407 2948 1.358759 GCCACACCCAACGTCAAAG 59.641 57.895 0.00 0.00 0.00 2.77
2408 2949 2.473760 CGCCACACCCAACGTCAAA 61.474 57.895 0.00 0.00 0.00 2.69
2409 2950 2.897846 CGCCACACCCAACGTCAA 60.898 61.111 0.00 0.00 0.00 3.18
2415 2956 4.514585 AACCAGCGCCACACCCAA 62.515 61.111 2.29 0.00 0.00 4.12
2416 2957 4.514585 AAACCAGCGCCACACCCA 62.515 61.111 2.29 0.00 0.00 4.51
2417 2958 3.977244 CAAACCAGCGCCACACCC 61.977 66.667 2.29 0.00 0.00 4.61
2418 2959 3.977244 CCAAACCAGCGCCACACC 61.977 66.667 2.29 0.00 0.00 4.16
2419 2960 2.781158 AACCAAACCAGCGCCACAC 61.781 57.895 2.29 0.00 0.00 3.82
2420 2961 2.441164 AACCAAACCAGCGCCACA 60.441 55.556 2.29 0.00 0.00 4.17
2421 2962 2.027460 CAACCAAACCAGCGCCAC 59.973 61.111 2.29 0.00 0.00 5.01
2422 2963 3.910490 GCAACCAAACCAGCGCCA 61.910 61.111 2.29 0.00 0.00 5.69
2423 2964 3.605664 AGCAACCAAACCAGCGCC 61.606 61.111 2.29 0.00 0.00 6.53
2424 2965 1.791103 TACAGCAACCAAACCAGCGC 61.791 55.000 0.00 0.00 0.00 5.92
2425 2966 0.881118 ATACAGCAACCAAACCAGCG 59.119 50.000 0.00 0.00 0.00 5.18
2426 2967 1.067635 CCATACAGCAACCAAACCAGC 60.068 52.381 0.00 0.00 0.00 4.85
2427 2968 2.238521 ACCATACAGCAACCAAACCAG 58.761 47.619 0.00 0.00 0.00 4.00
2428 2969 2.373335 ACCATACAGCAACCAAACCA 57.627 45.000 0.00 0.00 0.00 3.67
2429 2970 3.389221 CAAACCATACAGCAACCAAACC 58.611 45.455 0.00 0.00 0.00 3.27
2430 2971 2.799978 GCAAACCATACAGCAACCAAAC 59.200 45.455 0.00 0.00 0.00 2.93
2431 2972 2.224161 GGCAAACCATACAGCAACCAAA 60.224 45.455 0.00 0.00 35.26 3.28
2432 2973 1.342819 GGCAAACCATACAGCAACCAA 59.657 47.619 0.00 0.00 35.26 3.67
2433 2974 0.965439 GGCAAACCATACAGCAACCA 59.035 50.000 0.00 0.00 35.26 3.67
2434 2975 1.256812 AGGCAAACCATACAGCAACC 58.743 50.000 0.00 0.00 39.06 3.77
2435 2976 2.295909 TGAAGGCAAACCATACAGCAAC 59.704 45.455 0.00 0.00 39.06 4.17
2436 2977 2.591923 TGAAGGCAAACCATACAGCAA 58.408 42.857 0.00 0.00 39.06 3.91
2437 2978 2.284754 TGAAGGCAAACCATACAGCA 57.715 45.000 0.00 0.00 39.06 4.41
2438 2979 5.163519 ACAATATGAAGGCAAACCATACAGC 60.164 40.000 0.00 0.00 39.06 4.40
2439 2980 6.455360 ACAATATGAAGGCAAACCATACAG 57.545 37.500 0.00 0.00 39.06 2.74
2440 2981 7.946381 TTACAATATGAAGGCAAACCATACA 57.054 32.000 0.00 0.00 39.06 2.29
2441 2982 7.920682 CCTTTACAATATGAAGGCAAACCATAC 59.079 37.037 0.00 0.00 37.26 2.39
2442 2983 7.617723 ACCTTTACAATATGAAGGCAAACCATA 59.382 33.333 1.48 0.00 46.04 2.74
2443 2984 6.440328 ACCTTTACAATATGAAGGCAAACCAT 59.560 34.615 1.48 0.00 46.04 3.55
2444 2985 5.777732 ACCTTTACAATATGAAGGCAAACCA 59.222 36.000 1.48 0.00 46.04 3.67
2445 2986 6.152831 AGACCTTTACAATATGAAGGCAAACC 59.847 38.462 1.48 0.00 46.04 3.27
2446 2987 7.158099 AGACCTTTACAATATGAAGGCAAAC 57.842 36.000 1.48 0.00 46.04 2.93
2447 2988 7.361713 CGAAGACCTTTACAATATGAAGGCAAA 60.362 37.037 1.48 0.00 46.04 3.68
2448 2989 6.093495 CGAAGACCTTTACAATATGAAGGCAA 59.907 38.462 1.48 0.00 46.04 4.52
2449 2990 5.584649 CGAAGACCTTTACAATATGAAGGCA 59.415 40.000 1.48 0.00 46.04 4.75
2450 2991 5.815740 TCGAAGACCTTTACAATATGAAGGC 59.184 40.000 1.48 0.00 46.04 4.35
2469 3010 1.398451 GCGTCACAACCAATGTCGAAG 60.398 52.381 0.00 0.00 41.46 3.79
2500 3041 7.262772 CAATGACAATGAAGCAAACCATAGAT 58.737 34.615 0.00 0.00 0.00 1.98
2504 3045 4.571919 CCAATGACAATGAAGCAAACCAT 58.428 39.130 0.00 0.00 0.00 3.55
2513 3054 3.433343 ACCTCATGCCAATGACAATGAA 58.567 40.909 0.00 0.00 37.91 2.57
2518 3059 1.203038 ACCAACCTCATGCCAATGACA 60.203 47.619 0.00 0.00 37.91 3.58
2519 3060 1.474077 GACCAACCTCATGCCAATGAC 59.526 52.381 0.00 0.00 37.91 3.06
2520 3061 1.355381 AGACCAACCTCATGCCAATGA 59.645 47.619 0.00 0.00 40.61 2.57
2521 3062 1.843368 AGACCAACCTCATGCCAATG 58.157 50.000 0.00 0.00 34.88 2.82
2522 3063 2.846206 TCTAGACCAACCTCATGCCAAT 59.154 45.455 0.00 0.00 0.00 3.16
2523 3064 2.265367 TCTAGACCAACCTCATGCCAA 58.735 47.619 0.00 0.00 0.00 4.52
2524 3065 1.951209 TCTAGACCAACCTCATGCCA 58.049 50.000 0.00 0.00 0.00 4.92
2525 3066 2.171448 ACATCTAGACCAACCTCATGCC 59.829 50.000 0.00 0.00 0.00 4.40
2526 3067 3.550437 ACATCTAGACCAACCTCATGC 57.450 47.619 0.00 0.00 0.00 4.06
2527 3068 3.624861 GCAACATCTAGACCAACCTCATG 59.375 47.826 0.00 0.00 0.00 3.07
2528 3069 3.521126 AGCAACATCTAGACCAACCTCAT 59.479 43.478 0.00 0.00 0.00 2.90
2529 3070 2.906389 AGCAACATCTAGACCAACCTCA 59.094 45.455 0.00 0.00 0.00 3.86
2530 3071 3.618690 AGCAACATCTAGACCAACCTC 57.381 47.619 0.00 0.00 0.00 3.85
2531 3072 3.073062 ACAAGCAACATCTAGACCAACCT 59.927 43.478 0.00 0.00 0.00 3.50
2532 3073 3.412386 ACAAGCAACATCTAGACCAACC 58.588 45.455 0.00 0.00 0.00 3.77
2533 3074 4.319177 AGACAAGCAACATCTAGACCAAC 58.681 43.478 0.00 0.00 0.00 3.77
2534 3075 4.623932 AGACAAGCAACATCTAGACCAA 57.376 40.909 0.00 0.00 0.00 3.67
2535 3076 4.202357 ACAAGACAAGCAACATCTAGACCA 60.202 41.667 0.00 0.00 0.00 4.02
2536 3077 4.153117 CACAAGACAAGCAACATCTAGACC 59.847 45.833 0.00 0.00 0.00 3.85
2537 3078 4.153117 CCACAAGACAAGCAACATCTAGAC 59.847 45.833 0.00 0.00 0.00 2.59
2538 3079 4.202357 ACCACAAGACAAGCAACATCTAGA 60.202 41.667 0.00 0.00 0.00 2.43
2539 3080 4.067896 ACCACAAGACAAGCAACATCTAG 58.932 43.478 0.00 0.00 0.00 2.43
2540 3081 4.085357 ACCACAAGACAAGCAACATCTA 57.915 40.909 0.00 0.00 0.00 1.98
2541 3082 2.936202 ACCACAAGACAAGCAACATCT 58.064 42.857 0.00 0.00 0.00 2.90
2542 3083 4.455533 TCATACCACAAGACAAGCAACATC 59.544 41.667 0.00 0.00 0.00 3.06
2543 3084 4.397420 TCATACCACAAGACAAGCAACAT 58.603 39.130 0.00 0.00 0.00 2.71
2544 3085 3.814625 TCATACCACAAGACAAGCAACA 58.185 40.909 0.00 0.00 0.00 3.33
2545 3086 4.216257 ACATCATACCACAAGACAAGCAAC 59.784 41.667 0.00 0.00 0.00 4.17
2546 3087 4.216042 CACATCATACCACAAGACAAGCAA 59.784 41.667 0.00 0.00 0.00 3.91
2547 3088 3.752747 CACATCATACCACAAGACAAGCA 59.247 43.478 0.00 0.00 0.00 3.91
2548 3089 3.127548 CCACATCATACCACAAGACAAGC 59.872 47.826 0.00 0.00 0.00 4.01
2549 3090 4.154737 CACCACATCATACCACAAGACAAG 59.845 45.833 0.00 0.00 0.00 3.16
2550 3091 4.071423 CACCACATCATACCACAAGACAA 58.929 43.478 0.00 0.00 0.00 3.18
2551 3092 3.072330 ACACCACATCATACCACAAGACA 59.928 43.478 0.00 0.00 0.00 3.41
2552 3093 3.436704 CACACCACATCATACCACAAGAC 59.563 47.826 0.00 0.00 0.00 3.01
2553 3094 3.072330 ACACACCACATCATACCACAAGA 59.928 43.478 0.00 0.00 0.00 3.02
2554 3095 3.189080 CACACACCACATCATACCACAAG 59.811 47.826 0.00 0.00 0.00 3.16
2555 3096 3.145286 CACACACCACATCATACCACAA 58.855 45.455 0.00 0.00 0.00 3.33
2556 3097 2.551938 CCACACACCACATCATACCACA 60.552 50.000 0.00 0.00 0.00 4.17
2557 3098 2.083774 CCACACACCACATCATACCAC 58.916 52.381 0.00 0.00 0.00 4.16
2558 3099 1.702401 ACCACACACCACATCATACCA 59.298 47.619 0.00 0.00 0.00 3.25
2559 3100 2.487762 CAACCACACACCACATCATACC 59.512 50.000 0.00 0.00 0.00 2.73
2560 3101 2.095263 GCAACCACACACCACATCATAC 60.095 50.000 0.00 0.00 0.00 2.39
2561 3102 2.158559 GCAACCACACACCACATCATA 58.841 47.619 0.00 0.00 0.00 2.15
2562 3103 0.961019 GCAACCACACACCACATCAT 59.039 50.000 0.00 0.00 0.00 2.45
2563 3104 0.106769 AGCAACCACACACCACATCA 60.107 50.000 0.00 0.00 0.00 3.07
2564 3105 1.890876 TAGCAACCACACACCACATC 58.109 50.000 0.00 0.00 0.00 3.06
2565 3106 2.356665 TTAGCAACCACACACCACAT 57.643 45.000 0.00 0.00 0.00 3.21
2566 3107 2.356665 ATTAGCAACCACACACCACA 57.643 45.000 0.00 0.00 0.00 4.17
2567 3108 2.884639 AGAATTAGCAACCACACACCAC 59.115 45.455 0.00 0.00 0.00 4.16
2568 3109 3.222173 AGAATTAGCAACCACACACCA 57.778 42.857 0.00 0.00 0.00 4.17
2569 3110 4.154195 CACTAGAATTAGCAACCACACACC 59.846 45.833 0.00 0.00 0.00 4.16
2570 3111 4.755123 ACACTAGAATTAGCAACCACACAC 59.245 41.667 0.00 0.00 0.00 3.82
2571 3112 4.968259 ACACTAGAATTAGCAACCACACA 58.032 39.130 0.00 0.00 0.00 3.72
2572 3113 5.941948 AACACTAGAATTAGCAACCACAC 57.058 39.130 0.00 0.00 0.00 3.82
2580 3121 7.389479 GTTACAACGCTAACACTAGAATTAGC 58.611 38.462 22.34 22.34 46.47 3.09
2581 3122 7.598306 CGTTACAACGCTAACACTAGAATTAG 58.402 38.462 1.04 5.14 46.06 1.73
2582 3123 7.496704 CGTTACAACGCTAACACTAGAATTA 57.503 36.000 1.04 0.00 46.06 1.40
2583 3124 6.385537 CGTTACAACGCTAACACTAGAATT 57.614 37.500 1.04 0.00 46.06 2.17
2608 3149 0.528470 AGAGAAGAGACGCCTTTCGG 59.472 55.000 0.00 0.00 43.86 4.30
2609 3150 3.489180 TTAGAGAAGAGACGCCTTTCG 57.511 47.619 0.00 0.00 45.38 3.46
2610 3151 3.553917 GCATTAGAGAAGAGACGCCTTTC 59.446 47.826 0.00 0.00 0.00 2.62
2611 3152 3.055819 TGCATTAGAGAAGAGACGCCTTT 60.056 43.478 0.00 0.00 0.00 3.11
2612 3153 2.497675 TGCATTAGAGAAGAGACGCCTT 59.502 45.455 0.00 0.00 0.00 4.35
2613 3154 2.103373 TGCATTAGAGAAGAGACGCCT 58.897 47.619 0.00 0.00 0.00 5.52
2614 3155 2.586258 TGCATTAGAGAAGAGACGCC 57.414 50.000 0.00 0.00 0.00 5.68
2615 3156 4.115516 TCATTGCATTAGAGAAGAGACGC 58.884 43.478 0.00 0.00 0.00 5.19
2616 3157 6.920210 TGTATCATTGCATTAGAGAAGAGACG 59.080 38.462 0.00 0.00 0.00 4.18
2617 3158 7.708322 TGTGTATCATTGCATTAGAGAAGAGAC 59.292 37.037 0.00 0.00 0.00 3.36
2618 3159 7.785033 TGTGTATCATTGCATTAGAGAAGAGA 58.215 34.615 0.00 0.00 0.00 3.10
2619 3160 8.496751 CATGTGTATCATTGCATTAGAGAAGAG 58.503 37.037 0.00 0.00 34.09 2.85
2620 3161 7.041576 GCATGTGTATCATTGCATTAGAGAAGA 60.042 37.037 0.00 0.00 34.09 2.87
2621 3162 7.041303 AGCATGTGTATCATTGCATTAGAGAAG 60.041 37.037 0.00 0.00 35.02 2.85
2622 3163 6.769341 AGCATGTGTATCATTGCATTAGAGAA 59.231 34.615 0.00 0.00 35.02 2.87
2623 3164 6.293698 AGCATGTGTATCATTGCATTAGAGA 58.706 36.000 0.00 0.00 35.02 3.10
2624 3165 6.555812 AGCATGTGTATCATTGCATTAGAG 57.444 37.500 0.00 0.00 35.02 2.43
2625 3166 6.947644 AAGCATGTGTATCATTGCATTAGA 57.052 33.333 0.00 0.00 35.02 2.10
2626 3167 7.272731 GCATAAGCATGTGTATCATTGCATTAG 59.727 37.037 0.00 0.00 41.58 1.73
2627 3168 7.085746 GCATAAGCATGTGTATCATTGCATTA 58.914 34.615 0.00 0.00 41.58 1.90
2628 3169 5.924254 GCATAAGCATGTGTATCATTGCATT 59.076 36.000 0.00 0.00 41.58 3.56
2629 3170 5.466819 GCATAAGCATGTGTATCATTGCAT 58.533 37.500 0.00 0.00 41.58 3.96
2630 3171 4.261698 GGCATAAGCATGTGTATCATTGCA 60.262 41.667 0.00 0.00 44.61 4.08
2631 3172 4.232221 GGCATAAGCATGTGTATCATTGC 58.768 43.478 0.00 0.00 44.61 3.56
2632 3173 4.521639 AGGGCATAAGCATGTGTATCATTG 59.478 41.667 0.00 0.00 44.61 2.82
2633 3174 4.733165 AGGGCATAAGCATGTGTATCATT 58.267 39.130 0.00 0.00 44.61 2.57
2634 3175 4.377762 AGGGCATAAGCATGTGTATCAT 57.622 40.909 0.00 0.00 44.61 2.45
2635 3176 3.862877 AGGGCATAAGCATGTGTATCA 57.137 42.857 0.00 0.00 44.61 2.15
2636 3177 4.823989 AGAAAGGGCATAAGCATGTGTATC 59.176 41.667 0.00 0.00 44.61 2.24
2637 3178 4.796606 AGAAAGGGCATAAGCATGTGTAT 58.203 39.130 0.00 0.00 44.61 2.29
2638 3179 4.235079 AGAAAGGGCATAAGCATGTGTA 57.765 40.909 0.00 0.00 44.61 2.90
2639 3180 3.091633 AGAAAGGGCATAAGCATGTGT 57.908 42.857 0.00 0.00 44.61 3.72
2640 3181 3.567164 CCTAGAAAGGGCATAAGCATGTG 59.433 47.826 0.00 0.00 44.61 3.21
2641 3182 3.459598 TCCTAGAAAGGGCATAAGCATGT 59.540 43.478 0.00 0.00 43.84 3.21
2642 3183 4.090761 TCCTAGAAAGGGCATAAGCATG 57.909 45.455 0.00 0.00 43.84 4.06
2643 3184 4.796110 TTCCTAGAAAGGGCATAAGCAT 57.204 40.909 0.00 0.00 43.84 3.79
2644 3185 4.796110 ATTCCTAGAAAGGGCATAAGCA 57.204 40.909 0.00 0.00 43.84 3.91
2645 3186 5.009110 GTGAATTCCTAGAAAGGGCATAAGC 59.991 44.000 2.27 0.00 43.84 3.09
2646 3187 6.122277 TGTGAATTCCTAGAAAGGGCATAAG 58.878 40.000 2.27 0.00 43.84 1.73
2647 3188 6.073447 TGTGAATTCCTAGAAAGGGCATAA 57.927 37.500 2.27 0.00 43.84 1.90
2648 3189 5.708736 TGTGAATTCCTAGAAAGGGCATA 57.291 39.130 2.27 0.00 43.84 3.14
2649 3190 4.591321 TGTGAATTCCTAGAAAGGGCAT 57.409 40.909 2.27 0.00 43.84 4.40
2650 3191 4.202567 ACTTGTGAATTCCTAGAAAGGGCA 60.203 41.667 2.27 0.00 43.84 5.36
2651 3192 4.336280 ACTTGTGAATTCCTAGAAAGGGC 58.664 43.478 2.27 0.00 43.84 5.19
2652 3193 6.901081 AAACTTGTGAATTCCTAGAAAGGG 57.099 37.500 2.27 0.00 43.84 3.95
2653 3194 9.678941 GTTAAAACTTGTGAATTCCTAGAAAGG 57.321 33.333 2.27 0.00 45.21 3.11
2684 3225 2.688477 ACCCATTTGCCCTCTCAAAAA 58.312 42.857 0.00 0.00 39.13 1.94
2685 3226 2.397044 ACCCATTTGCCCTCTCAAAA 57.603 45.000 0.00 0.00 39.13 2.44
2686 3227 2.397044 AACCCATTTGCCCTCTCAAA 57.603 45.000 0.00 0.00 39.87 2.69
2687 3228 2.397044 AAACCCATTTGCCCTCTCAA 57.603 45.000 0.00 0.00 0.00 3.02
2688 3229 2.397044 AAAACCCATTTGCCCTCTCA 57.603 45.000 0.00 0.00 0.00 3.27
2689 3230 4.466015 TGAATAAAACCCATTTGCCCTCTC 59.534 41.667 0.00 0.00 32.27 3.20
2690 3231 4.424842 TGAATAAAACCCATTTGCCCTCT 58.575 39.130 0.00 0.00 32.27 3.69
2691 3232 4.817318 TGAATAAAACCCATTTGCCCTC 57.183 40.909 0.00 0.00 32.27 4.30
2692 3233 6.352651 GGTTATGAATAAAACCCATTTGCCCT 60.353 38.462 0.00 0.00 39.43 5.19
2693 3234 5.820423 GGTTATGAATAAAACCCATTTGCCC 59.180 40.000 0.00 0.00 39.43 5.36
2694 3235 5.522097 CGGTTATGAATAAAACCCATTTGCC 59.478 40.000 0.00 0.00 41.81 4.52
2695 3236 6.103330 ACGGTTATGAATAAAACCCATTTGC 58.897 36.000 0.00 0.00 41.81 3.68
2696 3237 7.918562 CCTACGGTTATGAATAAAACCCATTTG 59.081 37.037 0.00 0.00 41.81 2.32
2697 3238 7.835181 TCCTACGGTTATGAATAAAACCCATTT 59.165 33.333 0.00 0.00 41.81 2.32
2698 3239 7.348033 TCCTACGGTTATGAATAAAACCCATT 58.652 34.615 0.00 0.00 41.81 3.16
2699 3240 6.902408 TCCTACGGTTATGAATAAAACCCAT 58.098 36.000 0.00 0.00 41.81 4.00
2700 3241 6.070078 ACTCCTACGGTTATGAATAAAACCCA 60.070 38.462 0.00 0.00 41.81 4.51
2701 3242 6.351711 ACTCCTACGGTTATGAATAAAACCC 58.648 40.000 0.00 0.00 41.81 4.11
2702 3243 7.981225 TGTACTCCTACGGTTATGAATAAAACC 59.019 37.037 0.00 0.00 41.48 3.27
2703 3244 8.931385 TGTACTCCTACGGTTATGAATAAAAC 57.069 34.615 0.00 0.00 0.00 2.43
2705 3246 9.754382 GATTGTACTCCTACGGTTATGAATAAA 57.246 33.333 0.00 0.00 0.00 1.40
2706 3247 8.916062 TGATTGTACTCCTACGGTTATGAATAA 58.084 33.333 0.00 0.00 0.00 1.40
2707 3248 8.467963 TGATTGTACTCCTACGGTTATGAATA 57.532 34.615 0.00 0.00 0.00 1.75
2708 3249 7.356089 TGATTGTACTCCTACGGTTATGAAT 57.644 36.000 0.00 0.00 0.00 2.57
2709 3250 6.778834 TGATTGTACTCCTACGGTTATGAA 57.221 37.500 0.00 0.00 0.00 2.57
2710 3251 6.379133 ACTTGATTGTACTCCTACGGTTATGA 59.621 38.462 0.00 0.00 0.00 2.15
2711 3252 6.570692 ACTTGATTGTACTCCTACGGTTATG 58.429 40.000 0.00 0.00 0.00 1.90
2712 3253 6.786967 ACTTGATTGTACTCCTACGGTTAT 57.213 37.500 0.00 0.00 0.00 1.89
2713 3254 6.319658 CCTACTTGATTGTACTCCTACGGTTA 59.680 42.308 0.00 0.00 0.00 2.85
2714 3255 5.126707 CCTACTTGATTGTACTCCTACGGTT 59.873 44.000 0.00 0.00 0.00 4.44
2715 3256 4.643784 CCTACTTGATTGTACTCCTACGGT 59.356 45.833 0.00 0.00 0.00 4.83
2716 3257 4.885907 TCCTACTTGATTGTACTCCTACGG 59.114 45.833 0.00 0.00 0.00 4.02
2717 3258 6.446781 TTCCTACTTGATTGTACTCCTACG 57.553 41.667 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.