>input_sequence_70092
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------------ATGGCCACCTCCACCTTCTCGCTCTTCTTCCCGCCGCTGCCCAGCAGCAAAGGCCAGTGGCCGTCGGT
GGAGGAGGCTGCCTACTCGTACGACGACCACAGCACCGTCACCACCCTCTCTCCCTCCTCCCCGGCCTCCTCTGCTTCCT
CGGGCTCACTCGTGGACTGCACGCTCTCCCTCGGCACGCCCTCCTCGCGCTGCCCAGAGCCGGACCGCAGGCCG------
---CCGCCGCAGGCGTACCAGTCCGTGTCCGCCGCGGCCGACCCCTGCTACTACCACCAGCAGCAGGGCAGGAGCGGCGC
CGCCGGCCACGAGCAGCTCCTGGACCGCCGCTGCGCCAACTGCGGCACCGCGTCCACGCCGCTCTGGAGGAACGGCCCTC
GCGGACCCAAGGTACG----AATGCACCCTCGCGCATTGTCTACTTTGTCTCCGCGTTCTTGCATTCCATTGATCTCTCG
TTGTCTTGTGACAT----------------------TGTCCCAGTCGCTGTGCAACGCCTGCGGCATAAGGTTCAAGAAG
GAGGAGCGCCGCGCGGCGGAGACCAATGCCGGCGGCGGGTGCGGCTACGTCGCGCAGCGGGCACCCATGTCGGCCCCTCG
CGCCGTGCCGTACGCGGAGGAGGCGCCGCTTCCTTACGCCGGCGCCGTCGACGCGCCGTTCCTGGCGTGGCGGCTGAACG
GCGTCCCGCCGGCCCCGGCGTTCTCGGCGTGGCCCGACAGGCAGCACGGCGTGTACCAGTACAACTAG------------
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>chr1B_1_TraesCS1B01G448200
CCATCCCACCGCACCCCGTCACATGGCTCGCTGCCTAGCTTTTGACCGCGCCCGGGCCAAGCAAGCAACGGGGCCATCAG
CCATGGCAGCCATGGCTGGCAGTGAGTGAGATGTT---------------------------------------------
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------------------------------------------------------GCTACTGTCAAGATACTACCAGTACT
------------------CCGGGCTGTCAGTGTCAGGGAG---GCCTGCGTCGCCACCTCTGGCATGCATGCGTACCTTT
GGCTGGCGGGATCTCCGGTATACTGTTATGATGTCAAAGG-CCAGCGCCGGAACGGTCACTC------GCCGTCGCTCTA
TATGACACCCCTGGCCGAG------CCGGCAGGCAGTTTCCCAACCGGGCAGCATCTTTGCTTTGCCTC---CTCCGTGA
TCGCCCATTTGATTCCTGAGGCAACGTGCGTGCTTGCATGGGCTCGCTCGC------------------TGTAGCTCCGG
GATAAGCGCGGCAGATCGTCGGCCTCTGCCCCTCTGCTCCGAGCAGTCACCCATCCATCCAGCCTCCCGTCGTCCGGCCG
C-----------------CCAAGCCGAGCCAAGACTGCCATCCACAGGAGCAGAGCGGCAG----------GGCGCAGCC
AGCCAGTCCAACCGCGCACTCATTGGCCGCC------------CTGCTCCGCCGGTCTTGGCTTGCCTCTGTAGCCGTGC
ACAATCTTTTGTTCCATTGCATGGAGCATGCATCCTAGCGTAGCCTAGCTAGTGGCGACGCATGTA-----TGCGACCGA
GGCGGCTGCTGTTCAAAGCAAAGCAAACCAGCGCCTCGATTACTACCACTCCAGCAAGCAAAGCAAAGCAAAGCACC---
--AGATGAGATGGATGCAAATCTAAAATCAAGTTTTGCGCATCTCGGGCACCCTATAAATCCTAGCTGCCGCGGCCTACC
TCCA-------GTAGCTCACCACCAGCTTCACTCTGCTCTGCTAGCAGCAAGCCAGCTAGCTCCTCGCCTCCTCCTCGAC
AC--ACTGCTAGCAGCTTCTCTTCTCTTCTCTCTAAATAACAGAGCGCCCGCCCAAGCTAGGTGGCACTAGAACGTCGCA
AGCTCCGGCGCTATGGCCACCTCCACCTTCTCGCTCTTCTTCCCGCCGCTGCCCAGCAGCAAAGGCCAGTGGCCGTCGGT
GGAGGAGGCTGCCTACTCGTACGACGACCACAGCACCGTCACCACCCTCTCTCCCTCCTCCCCGGCCTCCTCTGCTTCCT
CGGGCTCACTCGTGGACTGCACGCTCTCCCTCGGCACGCCCTCCTCGCGCTGCCCAGAGCCGGACCGCAGGCCG------
---CCGCCGCAGGCGTACCAGTCCGTGTCCGCCGCGGCCGACCCCTGCTACTACCACCAGCAGCAGGGCAGGAGCGGCGC
CGCCGGCCACGAGCAGCTCCTGGACCGCCGCTGCGCCAACTGCGGCACCGCGTCCACGCCGCTCTGGAGGAACGGCCCTC
GCGGACCCAAGGTACG----AATGCACCCTCGCGCATTGTCTACTTTGTCTCCGCGTTCTTGCATTCCATTGATCTCTCG
TTGTCTTGTGACAT----------------------TGTCCCAGTCGCTGTGCAACGCCTGCGGCATAAGGTTCAAGAAG
GAGGAGCGCCGCGCGGCGGAGACCAATGCCGGCGGCGGGTGCGGCTACGTCGCGCAGCGGGCACCCATGTCGGCCCCTCG
CGCCGTGCCGTACGCGGAGGAGGCGCCGCTTCCTTACGCCGGCGCCGTCGACGCGCCGTTCCTGGCGTGGCGGCTGAACG
GCGTCCCGCCGGCCCCGGCGTTCTCGGCGTGGCCCGACAGGCAGCACGGCGTGTACCAGTACAACTAGCC--TAGTACTA
GTGGGTAGTACGTGTAGGTACGTG-TTAGGGCATGGAACGCGGTTGGTGGGCGCTGCAACGTTTTTTTGGGGATTTTGTT
GGGGACGTACGGTTGCACGCGGCCGGTGGGATATGCATGTGCAGTAGTGCTCTAGTACTGTATTTTGTCTGACATTATCG
TTGAGCAAGCCTGCAAAACATATGAATTATGAAC------TAGTGCATGTCTTGTTTCTCATGTTTCAGTTGCACCCTTG
TGTACC----ATCGATCGATGCGCCTGGGCTATGAATTTCGTCCCACAATATAACT------------------------
--------------------------------------------------GACAACTTTTAAGTCCGAAGCTGACAACGG
CGACGCGAGCTCTGGAGGCGTTGTTTTGGCCCTGATCTTGTGCTTGGGGAAACTTGTGGTCTGACCTGCAGACTAGGC--
--GCGGTGCCATGTCGTCGCTTCCTCCTTGGAGGTATT---GTGTTCATGCTTGAGGAACTCCGATGGTGCGGCGTGAGT
CGGTATCGGCTACTACTTTGGGCGTGAGCCTTTGGGGCGCAATGTAC---------------------------------
-----ATCATCGTCGGCGCTCTTTCTTGACGACGCCTTATCTAGGTTTGCCCAGGCCCTGCCATGCACTTGCCAAATTTC
TCTTGACACGATGGATAG-GGGTATGTTGGTCTGTATTTTCCTCGGGTCTTCTAATATCGTAGAGGTCTTTGACGTTGGG
TGTGGCGCTGGTTTGGTTGCTGTATGGTTTGCCTTCATATTGTAAAGGTCTTCGACATTGGTTGTGACGCTGGTTGGTTG
ATCTATGGTTTGCTTCATTGTCATTGGCATGAGGTTGGTCTAGATGTTGCTTGTCTTGTGGTATGATGTGGTGTGTGGTT
GCTAATTCTAGTGTTAGCGTTGTAACGGCCGAAAGGCGTCTCTTCTCTAATGCAATGATACACATGCTTATGCCCTTTCT
AGGAATTCACAAGTTTTAACTTTTTTTTTGAGAGGGCAAATGGGTTTTATTCATAACCGTAGGAGTACAATCAAGTAGGA
A
>chr1A_1
CCATCCCACCACGCCCCGTCACATGGCTCTCTACCTAGCTTTTGACCGCGCCCGGGCCAAGCAAGCAACGGGGCCATCAG
CCATGGCTGCCATGGCTGCCACTGAGTGAGATGTGGGGATGTTTGGTTTGTGACTAACTTAGCCAAAAATTGCCATAACT
AAGGTTAGACAAGTTTGACCAACTTAGGTGAGTGTTTGGTTCATGTCACACCTTAGGCAAGCCACACTTAGACCCCACAT
GGCATACACACAAAAAGTGTGGCAAGATTTCCTTAGGCTTGCCAACTTGTGGCTCTTATTTTGATAAACTAATCTTAGGC
AAGCTTGACAAAAATGTGTGGTAAGATGTGGCAATGCTAGTTCTAAAACCAAAAGCCACTGTCAAGATACTACTACTAGT
GCTAGTAGCTAGCTAGGCCCGGGCTGTCAGTGTCAGGGACGCCGCCTGCGTCGCCCCCTCTGGCATGCATGCGTACCTTT
GGCTGGCGGGATCTCCGGTATACTGTTATGATGTCAAATGACCAGCGCCGGAACGGTCAC------TCGCCGTCGCTATA
TATGACACCCCTGGCCGAGGGACGACCGGCAGGCAGTTTCCCAACCGGGCAGCATCTTTGCTTTGCCTCCGTCTCCGTGA
TCGCTCATTTGATTCTTGAGGCGA----CGTGCTTGCATGGGCTCGCTCGC------------------TGTAGCTCCGG
GATAAGCGCGGCAGATCGTCGGCCTCTGC--------TTCGAGCAGTCACCCATCCATCCAACCTCCCGTCGAGACGTCC
GTCGTCCGGCCACCCG-----AGCCGAGCCAAGACTGTCATCCACAGGAGCAGAGCGGCAGGGCTGGCTTCGGCGCAGCC
AGCCAGTCCAACCGAGCACTCATTGGCCGCCCTGCTGTGCCGCCTGCTCTGCTGGTCTTGCCTTGCCTCTGTAGTCGTGC
ACAATCTTTTGTTCCATTGCATGGAGCATGCATCCTAGCGTAGCCTAGCTAGTGGCGACGCATGTA-----TGCGACCGA
GGCGGCTGCTGTTCAAAGCAAAGCAAACCAGCGCCTCGATTACTACCACTCCAGCAAGCAAAGCAAAGCAAAGCAGC---
--AGACG-GATGGATGCAAATCTAA--TCAAGTTTTGCGCATCTCGGTCACCCTATAAATCCTAGCTGCCGCTGCCTACC
TCCA-------GTAGCTCACCACCACCTTCACTCTCCA-TGCTCGCAGCAAGCCAGCTAGCTCCTCGCCTCCTCTCGTCA
CACTACTACTAGCAGCTTCTCTTCTCTTCTCTTTAAGTAACAGAGA----GCCCAAGCTAGGTGACACTAGAGCGTCTCA
AGCACCCGCGCCATGGCCACCTCCACCTTCTCGCTCTTCTTCCCGCCGCTGCCCAGCAGCAAAGGCCAGTGGCCGTCTGT
AGAGGAGGCTGCCTACTCCTACGATGACCACAGCTCCGTCACCACCCTCTCCCCTTCCTCCCCGGCCTCCTCTGCTTCCT
CGGGATCCCTGGTGGACTGCACGCTCTCCCTCGGCACGCCGTCGACGCGCCGCCCCGAGCCAGACCGTACTAGGCACGGG
GCTCCGCCGCAGGCCTACCCGTCCGTGTCTGCCGGGGCCGAGCCCTGCTACTACCACCAGCAGCAGGGCAGGGGCGGCGC
CGCCGGGCACGAGCAGCTCCTGGACCGCCGCTGCGCCAACTGCGGCACGGCGTCCACGCCGCTCTGGCGGAACGGCCCTC
GCGGACCCAAGGTAAG----CATACACCCTCGCGCATTCTCCACTTTGTCATCGTGTTCTTGCATTACATTGATCTCTCC
TTGTCTTGTGACAT----------------------TGTCGCAGTCCCTCTGCAACGCCTGCGGCATCAGGTTCAAGAAG
GAGGAGCGCCGCGCGGCGGAGACCAATGCCGGCGGCGGGTGCGGCTACGTCGCGCAGCGGGCGCACGTGTCGGCCCCTCG
TGCCGTGCCGTACGCGGAGGAGG---CGCTTCCTTACGCCGGCGCCGTCGACGCGCCCTTCCTGGCGTGGCGGCTGAACG
GCGTCCCGCCGGCCCCGGCGTTCTCGTCGTGGCCCGACAGGCAGCACGGCGTGTACCAGTACAACTAGCTAGTAGTACTA
GTGAGTAGTACGTGTAGGTACGTG-TTAGGGCATGGAACGCGGTTGGTGGGCGCTGCAACGTTTTTTTGGGGATCTTGTT
GGGGACGTACGGTTGCACGCGGCCGGTGGGATATGCATGTGCAGTAGTAGC-----ACTGTATTTTGTCTGACATTATCG
TTGAGCAAGCCTGCCAAACATATGAATTATGAAG------TAGTACATGTCTTGTTTCTCATGTTTGAATAGCACCCTTG
TGTACCATCTATCGATCGATGCGCTTGGGCTATGAACTTCGTCCCACAATATAACC------------------------
--------------------------------------------------CACAAGTTTTAATTCCGAAGCTGACAACGG
CGACGCGAGCTCTGGAGGTGTTGTTTTGGCATGATCTTG------GGGGAAATTTTTGGTTTGACCCTCAGACCAGGAGG
TGGCCTTGCCATGTCGTCGTTTCCTTCTTGGAGCTATCATC-----------TGAGGAATTCCG----------------
-------GGCTACTATTTTGGGCATGGGCCTTCCAGGCGCAATGTACATCATCGTTGGCGCATGGGCCTTCCAGGCACAA
TGTACATAATCGTTGGCGCTCTCTCTTGACGACGCCTTGTCTAGGTCTGCCCATGCCCTGCCACCCACTTGTCAACGTTC
TCTTGATGCAATGGAT-G-GGGTACGTTGCTTTGTGTTGTCGTCGGGTCTTGTCATG-----------------------
---------------------------------------TTGTAGAGGTTTTCGATGTTGGTTGTAACGTTGGTTGGTTG
--CTGTGGTTTGCCTCAT--------------------------------------------------------------
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>chr1D_1
CCATCCCCCCGCACCCCGTCACATGGCTCGCTACCTACCTTTTGACCGCGCCCGGGC----CAAGCAACGGGGCCATCAG
CCATGGCTGCCA---------GTGAGTGAGATGTT---------------------------------------------
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------------------------------------------------------GCCACTGTCAAGATACTACTAGTACG
---AGTAGCTAGCTAGGCCCGGGCTGTCAGTGTCAGGGACGCC---TGCGTCGCCACCTCTGGCATGCATGCGTACCTTT
GGCTGACGGGATCTCCGGTATACTGTTATGATGTCAAAGG-CCAGCGCCGGAACGGTCACTCGCCGTCGCCGTCGCTATA
TATGACACCCCTGGCCGAG------CCCGCAGGCAGTTTCCCAACCGGGCAGCATCTTTGCTTTGCCTC---CTCCGTGA
TCGCTCATTTGATTCTTGAGGCGA----CGTGCTTGCATGGGCTCGCTCGCTGCAGCGGCAGCTGTAGCTGTAGCTCCGG
GATAAGCGCGGCAGATCGTCGGCCTCTGCCCCTCTGCTTCGAGCAGTCACCCATCCATCCAACCTCCCGTCGAGACGTCC
GTCGTCCGGCGAGGCCAGCCAAGCGGAGCCAAGACTGTCATCCACAGGAGCAGAGGGGCAGGGCTGGCTTCGGCGCAGCC
AGCCAGTCCAACCGCGCACTCATTGGCCGCCCTGCTGTGCCGCCTGCTCTGCTGGTCTTGGCTTGCCTCTGTAGCCGTGC
ACAATCTTTTGTTCCATTGCATGGAGCATGCATCCTAGCGTAGCCTAGCTAGTGGCGACGCATGTACGCGGTGCGACCGA
GGCGGCTGCTGTTCAAAGCAAAGCAAACCAGGGCCTCGATTACTACCACTCCAGCAAGCAAAGCAAAGCAAGGCACCAGA
TGAGATG-GATGGATGCAAATCTAA--TCAAGTTTTGCGCATCTCGGTCACCCTATAAATCCTAGCTGCCGCTGCCTACC
TCCACTCTCCAGTAGCTCACCACTAGCTTCACTCTGCTCGGCTAGCAGCAAGCCAGCTAGCTCCTCGCCTCCTCCTCGAC
AC--ACTGCTAGCAGCTTCTCCTCTCTT-----TAAATAACAGAGC----GCCCAAGCTAGGTGACACTAGAACGTCGCA
AGCTCCGGCGCCATGGCCACCTCCACCTTCTCGCTCTTCTTCCCGCCGCTGCCAAGCAGCAAGGGCCAGTGGCCGGTGGC
TGAGGAAACTGCCTACTCGTACGACGACCACAGCACCGTCACCACCCTCTCTCCTTCCTCCCCGGCCTCCTCTGCTTCCT
CGGGATACCTCGTGGACTGCACGCTCTCCCTCGGCACGCCGTCGACACGCCAACCCGAGCTGGACCGCACCAAGCACGGG
GCTCCGCCGCAGGCCTACCCGTCCGTGTCCGCCGGGGCCGAGCCCTGCTACTACCACCAGCAGCAGGGCAGGGGCGGCGC
CGCCGGGCACGACCAGCTCCTCGACCGCCGCTGCGCCAACTGCGGCACCGCGTCCACGCCGCTCTGGAGGAACGGCCCCC
GCGGACCCAAGGTACACAAACATTTACCCTCGCCCATGCTC-ACTTTGTCAGTGCGCTCTTCAAGTAGCTGCAACTGCGT
TTGGATTGATCTTCGTTGCCATGTATGTGCATTGTCTGTCGCAGTCGCTGTGCAACGCGTGCGGCATCCGGTTCAAGAAG
GAGGAGCGCCGCGCGGCGGAGACCAATGCCGGCGGCGGGTGCGGCTACGTCGCGCAGCGGGCGCACGTGTCGGCCCCTCG
CGCCGTGCCGTACGCGGAGGAGG---CGCTTCCTTACGCCGGCGCCGTCGACGGGCCGTTCCTGGCGTGGCGGCTGAACG
GCGTCCCGCCGGCCCCGGCGTTCTCGGCGTGGCCCGACAGGCAGCACGGAGTGTACCAGTACAACTAGCTAGTAGTACTA
GTGACTAGTACGTGTAGGTACGTGGTTAGGGCATGGAACGCGGTTGGTGGGCGCTGCAACGTTTTTTTGGGGATTTTGTT
GGGGACGTACGGTTGCACGCGGCCGGTGGGATATGCATGTGCAGTAGTGCT--AGTACTGTATTTTGTCTGACATTATCG
TTGAGCAAGCCTGCTAAACATATGAATTACTATGAAGTACTAGTACATGCCT---------TGTTTCAGTTGCACCCTTG
T--ACC----ATCGATCGATGCG-TTGGGCTATGAACTTCGTCCCACAATTATCGAAAAAGGCTTTCGCCCCGTTTTATA
TATAAAGCACCGATCATTAAACATTCGGTACAAACACACGACACCGCATTCATAAGTTTTAAGTCCGAAGCTGACAACGG
CGACGCGAGCTCTGGAGGCGTTGTTTTGGCCGTGATCTCGC----GGGGAAATTTTTGGTCCGACCTCCGGACCAGGAGG
TGGCCGTGCCATGTCGTCGTTTCCTCCTTGGAGCTATCGTCGTCTTCCTGCTCGAGGAATTCCGATGGTGTGGCTCGAGT
CGGTGTCGGCTACTACTTTGGGCGTGGGCCTTCGG--------------------------------------GGCACAG
TGTACATCATCGTTGGCGCGCTCTCTCGACGACGCCTTATCTAGGTCTCCCCAGGCCCTGCCACCCACTT-CCAACTTTC
TCTTGATGCAATGGGT-GAGGGTACGTTGCTCCGTGTTGTCCTCGGGTCTTGTCATA-----------------------
---------------------------------------TTGTAGAGGTTTTTGGCATTGGTTGTGATGCTGGTTGGTTG
CTCTGTGGTTTGCCTCAT--------------------------------------------------------------
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>SNPs
--------------------------------S-----------------------------------------------
-------S----------S-------------------------------------------------------------
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--------------------------------------------------------S----------------S------
---------------------------------------S----------------------------------------
-----------------------------------------------------------------------------S--
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----S----------S------S-SSSS----------------------------------------------------
--------------------------------------S----------------------S----------SSSS-S-S
S------------------------------------S------------------------------------------
-------------------------------------------------S--S---------------------------
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-------S-----------------SS--------------------S------------------------S-------
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--------------------------------S-------------SSSS--------------S---------------
-----------S--------------------------------------------------------------------
S-----------------------------------------------------S-------------------------
----S--S--------------------------------S--SS-----S----S-------------SSSS-------
--------------S----S--------------S------S------------------------------S-------
------S-------------------------------------------------------------------------
--------------------S--S--------------S--S--------SS--------------S------------S
----------------------------------------S--------------------------S------------
--------------------------------------------------------------S-S-S-------------
-----------------------SSS------------------------------------------------------
---------------------------------------------------------------------S----------
---S----------------------------------------------------------------------------
---------------------------------------------------SS---------------------------
--------------S------------------S----------S-----------------------------------
------------------------S-----------S------------------S------------------------
--------------------------------------------------S----S------------------------
-------------------------------S------S-SSSSS-------S--S-----------S-----S---S--
----S--------------S-------------S---S-----S---S-----------S----------S---SS----
----S---------------------S-----S-----------------------------------------------
-------------S--------S-----------------------S----------------SS----------S----
------SS-S------S-------S----S-----S--S------------S-S---SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S------------------------------
S---S--------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_1168
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----------------------------CAAGTTTTGCGCATCTCGGG--------------------------------
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>reverse_2601
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----------------------------------------TGCTTGGGGAAACTTGTGGT--------------------
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