Multiple sequence alignment - TraesCS1B01G417900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G417900 chr1B 100.000 4873 0 0 1 4873 642075078 642070206 0.000000e+00 8999.0
1 TraesCS1B01G417900 chr1B 88.650 326 37 0 4333 4658 183864617 183864942 9.830000e-107 398.0
2 TraesCS1B01G417900 chr1D 90.735 2871 149 53 1484 4299 465175862 465173054 0.000000e+00 3720.0
3 TraesCS1B01G417900 chr1D 96.989 930 24 1 564 1489 465176825 465175896 0.000000e+00 1559.0
4 TraesCS1B01G417900 chr1D 95.096 469 23 0 92 560 465185007 465184539 0.000000e+00 739.0
5 TraesCS1B01G417900 chr1D 89.524 210 14 3 4664 4873 465172969 465172768 4.840000e-65 259.0
6 TraesCS1B01G417900 chr1D 94.366 71 4 0 4 74 465185266 465185196 5.160000e-20 110.0
7 TraesCS1B01G417900 chr1A 91.302 1759 111 24 1484 3217 557559147 557557406 0.000000e+00 2362.0
8 TraesCS1B01G417900 chr1A 95.896 926 38 0 564 1489 557560106 557559181 0.000000e+00 1500.0
9 TraesCS1B01G417900 chr1A 84.592 993 70 32 3298 4242 557556657 557555700 0.000000e+00 909.0
10 TraesCS1B01G417900 chr1A 89.982 559 26 11 4 560 557560991 557560461 0.000000e+00 695.0
11 TraesCS1B01G417900 chr1A 89.583 48 3 2 4252 4297 557555658 557555611 5.270000e-05 60.2
12 TraesCS1B01G417900 chr5B 93.293 328 18 2 4333 4658 148995657 148995982 9.490000e-132 481.0
13 TraesCS1B01G417900 chr7D 90.274 329 32 0 4330 4658 30494501 30494829 9.690000e-117 431.0
14 TraesCS1B01G417900 chr3A 89.362 329 35 0 4330 4658 102234557 102234885 9.760000e-112 414.0
15 TraesCS1B01G417900 chr2B 87.234 329 42 0 4330 4658 39984351 39984679 4.600000e-100 375.0
16 TraesCS1B01G417900 chr3B 85.759 323 46 0 4330 4652 574359458 574359780 4.670000e-90 342.0
17 TraesCS1B01G417900 chr5D 81.308 107 19 1 4768 4873 232411940 232411834 8.690000e-13 86.1
18 TraesCS1B01G417900 chr6D 78.400 125 24 2 4751 4873 448845071 448844948 1.450000e-10 78.7
19 TraesCS1B01G417900 chr6A 78.571 126 22 4 4751 4873 594969407 594969284 1.450000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G417900 chr1B 642070206 642075078 4872 True 8999.00 8999 100.000 1 4873 1 chr1B.!!$R1 4872
1 TraesCS1B01G417900 chr1D 465172768 465176825 4057 True 1846.00 3720 92.416 564 4873 3 chr1D.!!$R1 4309
2 TraesCS1B01G417900 chr1D 465184539 465185266 727 True 424.50 739 94.731 4 560 2 chr1D.!!$R2 556
3 TraesCS1B01G417900 chr1A 557555611 557560991 5380 True 1105.24 2362 90.271 4 4297 5 chr1A.!!$R1 4293

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 701 0.529378 GGGTAGGTCGAACATCGTGT 59.471 55.0 1.87 0.0 41.35 4.49 F
1467 1996 0.240145 TGAACTACTCACTGCCGTCG 59.760 55.0 0.00 0.0 0.00 5.12 F
2288 2903 0.107703 GCGATCACCCCACAAGATCA 60.108 55.0 0.00 0.0 38.40 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1886 2497 1.006832 CCGTGTCGATGATCAAACCC 58.993 55.000 0.00 0.00 0.00 4.11 R
2872 3487 0.977395 CCTTGGGTTCGAAGAGAGGT 59.023 55.000 0.00 0.00 38.43 3.85 R
4071 5446 1.449353 CAGGATCAGTGGCCTAGGC 59.551 63.158 26.55 26.55 41.06 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.542132 CGATGTGATTTTGTTGACTTTTCATTT 58.458 29.630 0.00 0.00 0.00 2.32
45 46 2.103941 TGACTTTTCATTTTGGTGGGGC 59.896 45.455 0.00 0.00 0.00 5.80
74 75 7.651107 CGGTCGATATATATGTGTACAAAACG 58.349 38.462 0.00 0.00 0.00 3.60
83 84 2.885894 TGTGTACAAAACGGAAATCCCC 59.114 45.455 0.00 0.00 0.00 4.81
141 313 1.079543 CTGACGTTGGGAGGAGCAG 60.080 63.158 0.00 0.00 0.00 4.24
308 482 6.035220 GGATGTATGACATGTGTGCAAAATTG 59.965 38.462 1.15 0.00 39.27 2.32
323 497 4.622740 GCAAAATTGGTCTCATGTTGCTAC 59.377 41.667 5.04 0.00 0.00 3.58
449 623 4.866508 TCACTAGTGACGAGTCCAAAAT 57.133 40.909 21.74 0.00 34.14 1.82
483 657 6.468543 GTTAGCTCTATAGGAATTCCCCAAG 58.531 44.000 21.22 14.78 36.42 3.61
508 682 5.882000 TCTATCCATGTTGTTTGATGTGAGG 59.118 40.000 0.00 0.00 0.00 3.86
519 693 1.272816 TGATGTGAGGGGTAGGTCGAA 60.273 52.381 0.00 0.00 0.00 3.71
527 701 0.529378 GGGTAGGTCGAACATCGTGT 59.471 55.000 1.87 0.00 41.35 4.49
543 717 3.056328 GTGGCGAGCTTCCCCAAC 61.056 66.667 2.93 0.00 0.00 3.77
557 731 9.355916 GAGCTTCCCCAACTTTAATCTATAATT 57.644 33.333 0.00 0.00 0.00 1.40
562 736 9.983024 TCCCCAACTTTAATCTATAATTGTTCA 57.017 29.630 0.00 0.00 0.00 3.18
643 1168 6.901300 AGACTTGGATTTTAGTTAGGGGATC 58.099 40.000 0.00 0.00 0.00 3.36
704 1229 2.109128 TGTGGTTTGGGTCACATGGTAT 59.891 45.455 0.00 0.00 38.75 2.73
729 1254 5.896432 CGATCGATTGCATAAACTAACACAC 59.104 40.000 10.26 0.00 0.00 3.82
999 1524 1.122019 GGGTACGATCCCATGAGGCT 61.122 60.000 13.12 0.00 46.30 4.58
1059 1584 1.157513 GGGGAGATCCTCCTCCTCC 59.842 68.421 12.24 0.00 44.98 4.30
1125 1650 2.250939 CGTTGACAAGCCGAGGCAA 61.251 57.895 17.18 0.00 44.88 4.52
1171 1696 2.419324 CAGCTTGAGAAGATCAGGTTGC 59.581 50.000 0.00 0.00 38.91 4.17
1344 1869 6.038936 ACTTGTGTTATATTCATTAACCGGGC 59.961 38.462 6.32 0.00 0.00 6.13
1356 1881 1.568504 AACCGGGCTGTCTGATCTTA 58.431 50.000 6.32 0.00 0.00 2.10
1361 1886 3.244353 CCGGGCTGTCTGATCTTATCAAT 60.244 47.826 0.00 0.00 39.11 2.57
1467 1996 0.240145 TGAACTACTCACTGCCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
1504 2111 4.399303 CCTTCCATCCAAATCTTGTGGTAC 59.601 45.833 0.00 0.00 37.43 3.34
1518 2125 5.990386 TCTTGTGGTACGTGCAATTTTACTA 59.010 36.000 5.86 0.00 0.00 1.82
1522 2129 5.852755 GTGGTACGTGCAATTTTACTAAACC 59.147 40.000 5.86 0.00 0.00 3.27
1664 2271 4.699257 GCTCCCTAGATTAAAGATGCATGG 59.301 45.833 2.46 0.00 0.00 3.66
1711 2318 8.458843 GGTTGATTACACATAATACAGTGCTTT 58.541 33.333 0.00 0.00 39.30 3.51
1741 2348 5.994054 TCTTATCACAAAGAGCCATGCTATC 59.006 40.000 0.00 0.00 39.88 2.08
1742 2349 2.554142 TCACAAAGAGCCATGCTATCG 58.446 47.619 0.00 0.00 39.88 2.92
1770 2378 7.719483 TGATCTTTTCTGCACAATTTTCTTCT 58.281 30.769 0.00 0.00 0.00 2.85
1771 2379 8.199449 TGATCTTTTCTGCACAATTTTCTTCTT 58.801 29.630 0.00 0.00 0.00 2.52
1772 2380 7.992180 TCTTTTCTGCACAATTTTCTTCTTC 57.008 32.000 0.00 0.00 0.00 2.87
1773 2381 7.775120 TCTTTTCTGCACAATTTTCTTCTTCT 58.225 30.769 0.00 0.00 0.00 2.85
1834 2445 2.288763 GGCAACCATCCGATTTTGTGTT 60.289 45.455 0.00 0.00 0.00 3.32
1843 2454 3.044986 CCGATTTTGTGTTGTGCTTGAG 58.955 45.455 0.00 0.00 0.00 3.02
1846 2457 4.671377 GATTTTGTGTTGTGCTTGAGTCA 58.329 39.130 0.00 0.00 0.00 3.41
1867 2478 4.325204 TCATATCGTACGTGCAGTTGTTTC 59.675 41.667 16.05 0.00 0.00 2.78
1886 2497 6.893759 TGTTTCGTATGACAAATGTAAGTGG 58.106 36.000 0.00 0.00 0.00 4.00
1904 2515 1.006832 GGGGTTTGATCATCGACACG 58.993 55.000 0.00 0.00 0.00 4.49
1994 2605 2.190538 TCCAGAGATGAGTGAATGGCA 58.809 47.619 0.00 0.00 0.00 4.92
2053 2664 7.921786 TTGTACTGGATTCATCGAAATCTTT 57.078 32.000 9.17 0.00 36.19 2.52
2190 2803 5.862924 ATCATTGTTATCGCCTTAATCCG 57.137 39.130 0.00 0.00 0.00 4.18
2196 2811 0.532862 ATCGCCTTAATCCGTGGCTG 60.533 55.000 0.00 0.00 44.09 4.85
2205 2820 0.107897 ATCCGTGGCTGCGTTAATGA 60.108 50.000 0.00 0.00 0.00 2.57
2206 2821 0.107897 TCCGTGGCTGCGTTAATGAT 60.108 50.000 0.00 0.00 0.00 2.45
2207 2822 0.732571 CCGTGGCTGCGTTAATGATT 59.267 50.000 0.00 0.00 0.00 2.57
2288 2903 0.107703 GCGATCACCCCACAAGATCA 60.108 55.000 0.00 0.00 38.40 2.92
2387 3002 7.705752 GTCCCAGCAATACTTTTCTAGTAGTAC 59.294 40.741 0.00 0.00 42.44 2.73
2415 3030 4.756642 TGCTAGCTGTATCAATAATGCACC 59.243 41.667 17.23 0.00 0.00 5.01
2471 3086 1.830086 TGTATACGTGTGAATCCGCG 58.170 50.000 0.00 0.00 43.62 6.46
2805 3420 9.799106 CATATAATTAACCTTCAGATCAGGGTT 57.201 33.333 13.35 13.35 43.40 4.11
2872 3487 0.099259 CGGGTAGCGATCACACGTTA 59.901 55.000 0.00 0.00 38.01 3.18
3043 3681 5.644644 CATGAGATACTTTTTGTTGCTCCC 58.355 41.667 0.00 0.00 31.13 4.30
3092 3730 9.308000 ACAAATATTCATCTGGTAGTTTTTGGA 57.692 29.630 0.00 0.00 0.00 3.53
3244 3883 1.063183 TTTTTGGGATTGCTTGGGGG 58.937 50.000 0.00 0.00 0.00 5.40
3368 4678 6.279513 TGACATATGGGGCTTAAAGTTTTG 57.720 37.500 7.80 0.00 0.00 2.44
3375 4685 3.431626 GGGGCTTAAAGTTTTGTTGTGCT 60.432 43.478 0.00 0.00 0.00 4.40
3385 4695 7.985634 AAGTTTTGTTGTGCTAATTGTAGTG 57.014 32.000 0.00 0.00 0.00 2.74
3453 4763 1.808411 TGTCCAGTTTCCTTCATCGC 58.192 50.000 0.00 0.00 0.00 4.58
3584 4900 3.678072 CACGGTTTACTGACATGGTACTG 59.322 47.826 0.00 0.00 0.00 2.74
3604 4922 5.712152 CTGCAAACCAGTTCCTAGATTTT 57.288 39.130 0.00 0.00 36.79 1.82
3605 4923 6.089249 CTGCAAACCAGTTCCTAGATTTTT 57.911 37.500 0.00 0.00 36.79 1.94
3606 4924 6.084326 TGCAAACCAGTTCCTAGATTTTTC 57.916 37.500 0.00 0.00 0.00 2.29
3687 5021 6.128486 ACAATGTGCCATCTTATGTCCATTA 58.872 36.000 0.00 0.00 0.00 1.90
3704 5038 7.883217 TGTCCATTATAGAGTTTACTCCGATC 58.117 38.462 6.28 0.00 43.88 3.69
3710 5044 6.978674 ATAGAGTTTACTCCGATCCAATCA 57.021 37.500 6.28 0.00 43.88 2.57
3791 5125 3.985279 CCATTTGTTTCATGTGACAGCTG 59.015 43.478 13.48 13.48 0.00 4.24
3881 5215 4.078639 GCTGAAGCTATGATACCACCTT 57.921 45.455 0.00 0.00 38.21 3.50
3901 5238 4.406069 CTTGTTAAACATGTCCATGCTCG 58.594 43.478 0.00 0.00 42.39 5.03
4058 5433 7.577303 ACGGCCATGGATTTCAGAATATATAT 58.423 34.615 18.40 0.00 0.00 0.86
4071 5446 5.816258 CAGAATATATATGGCAGCTGGTCTG 59.184 44.000 17.12 0.00 45.62 3.51
4088 5463 1.003442 TGCCTAGGCCACTGATCCT 59.997 57.895 30.81 0.00 41.09 3.24
4192 5567 6.873605 TCTCGATATTAATATTGCTGGTGGTG 59.126 38.462 15.44 2.26 0.00 4.17
4218 5597 2.336945 TCGTAAGGATGCGTAGGAGA 57.663 50.000 0.00 0.00 35.99 3.71
4244 5623 4.712337 TCCTGGCTCAAAAAGGTGTTTTTA 59.288 37.500 0.00 0.00 42.78 1.52
4284 5695 6.355397 CTAGGAAGCACTTTACATCATGTG 57.645 41.667 0.00 0.00 0.00 3.21
4328 5744 6.800072 TTTTTGAGGGGTGATAAACAACTT 57.200 33.333 0.00 0.00 36.30 2.66
4329 5745 6.800072 TTTTGAGGGGTGATAAACAACTTT 57.200 33.333 0.00 0.00 36.30 2.66
4330 5746 7.899648 TTTTGAGGGGTGATAAACAACTTTA 57.100 32.000 0.00 0.00 36.30 1.85
4331 5747 8.485578 TTTTGAGGGGTGATAAACAACTTTAT 57.514 30.769 0.00 0.00 35.59 1.40
4332 5748 7.461182 TTGAGGGGTGATAAACAACTTTATG 57.539 36.000 0.00 0.00 33.44 1.90
4333 5749 5.949354 TGAGGGGTGATAAACAACTTTATGG 59.051 40.000 0.00 0.00 33.44 2.74
4334 5750 6.147437 AGGGGTGATAAACAACTTTATGGA 57.853 37.500 0.00 0.00 33.44 3.41
4335 5751 6.557568 AGGGGTGATAAACAACTTTATGGAA 58.442 36.000 0.00 0.00 33.44 3.53
4336 5752 6.436218 AGGGGTGATAAACAACTTTATGGAAC 59.564 38.462 0.00 0.00 33.44 3.62
4337 5753 6.319399 GGGTGATAAACAACTTTATGGAACG 58.681 40.000 0.00 0.00 33.44 3.95
4338 5754 5.798434 GGTGATAAACAACTTTATGGAACGC 59.202 40.000 0.00 0.00 33.44 4.84
4339 5755 5.798434 GTGATAAACAACTTTATGGAACGCC 59.202 40.000 0.00 0.00 33.44 5.68
4340 5756 9.385292 GGTGATAAACAACTTTATGGAACGCCA 62.385 40.741 0.00 0.00 39.98 5.69
4348 5764 4.150994 TGGAACGCCAAACCAGAC 57.849 55.556 0.00 0.00 42.49 3.51
4349 5765 1.890041 TGGAACGCCAAACCAGACG 60.890 57.895 0.00 0.00 42.49 4.18
4350 5766 1.890510 GGAACGCCAAACCAGACGT 60.891 57.895 0.00 0.00 41.16 4.34
4351 5767 1.278637 GAACGCCAAACCAGACGTG 59.721 57.895 0.00 0.00 39.00 4.49
4352 5768 1.153329 AACGCCAAACCAGACGTGA 60.153 52.632 0.00 0.00 39.00 4.35
4353 5769 1.433837 AACGCCAAACCAGACGTGAC 61.434 55.000 0.00 0.00 39.00 3.67
4354 5770 1.885388 CGCCAAACCAGACGTGACA 60.885 57.895 0.00 0.00 0.00 3.58
4355 5771 1.433053 CGCCAAACCAGACGTGACAA 61.433 55.000 0.00 0.00 0.00 3.18
4356 5772 0.028902 GCCAAACCAGACGTGACAAC 59.971 55.000 0.00 0.00 0.00 3.32
4357 5773 0.661020 CCAAACCAGACGTGACAACC 59.339 55.000 0.00 0.00 0.00 3.77
4358 5774 1.374560 CAAACCAGACGTGACAACCA 58.625 50.000 0.00 0.00 0.00 3.67
4359 5775 1.330521 CAAACCAGACGTGACAACCAG 59.669 52.381 0.00 0.00 0.00 4.00
4360 5776 0.179056 AACCAGACGTGACAACCAGG 60.179 55.000 0.00 0.00 36.75 4.45
4361 5777 1.046472 ACCAGACGTGACAACCAGGA 61.046 55.000 0.00 0.00 34.88 3.86
4362 5778 0.600255 CCAGACGTGACAACCAGGAC 60.600 60.000 0.00 0.00 34.88 3.85
4363 5779 0.600255 CAGACGTGACAACCAGGACC 60.600 60.000 0.00 0.00 34.88 4.46
4364 5780 0.759436 AGACGTGACAACCAGGACCT 60.759 55.000 0.00 0.00 34.88 3.85
4365 5781 0.319641 GACGTGACAACCAGGACCTC 60.320 60.000 0.00 0.00 34.88 3.85
4366 5782 0.759436 ACGTGACAACCAGGACCTCT 60.759 55.000 0.00 0.00 34.88 3.69
4367 5783 1.254026 CGTGACAACCAGGACCTCTA 58.746 55.000 0.00 0.00 32.66 2.43
4368 5784 1.202582 CGTGACAACCAGGACCTCTAG 59.797 57.143 0.00 0.00 32.66 2.43
4369 5785 2.526432 GTGACAACCAGGACCTCTAGA 58.474 52.381 0.00 0.00 0.00 2.43
4370 5786 2.897969 GTGACAACCAGGACCTCTAGAA 59.102 50.000 0.00 0.00 0.00 2.10
4371 5787 3.323979 GTGACAACCAGGACCTCTAGAAA 59.676 47.826 0.00 0.00 0.00 2.52
4372 5788 3.578716 TGACAACCAGGACCTCTAGAAAG 59.421 47.826 0.00 0.00 0.00 2.62
4373 5789 3.833070 GACAACCAGGACCTCTAGAAAGA 59.167 47.826 0.00 0.00 0.00 2.52
4374 5790 4.232091 ACAACCAGGACCTCTAGAAAGAA 58.768 43.478 0.00 0.00 0.00 2.52
4375 5791 4.846940 ACAACCAGGACCTCTAGAAAGAAT 59.153 41.667 0.00 0.00 0.00 2.40
4376 5792 5.310857 ACAACCAGGACCTCTAGAAAGAATT 59.689 40.000 0.00 0.00 0.00 2.17
4377 5793 6.183361 ACAACCAGGACCTCTAGAAAGAATTT 60.183 38.462 0.00 0.00 43.98 1.82
4378 5794 6.455690 ACCAGGACCTCTAGAAAGAATTTT 57.544 37.500 0.00 0.00 39.27 1.82
4379 5795 6.853490 ACCAGGACCTCTAGAAAGAATTTTT 58.147 36.000 0.00 0.00 39.27 1.94
4406 5822 9.787532 TTTGCTAAACTATGTGCTTCATAATTC 57.212 29.630 4.37 0.00 38.38 2.17
4407 5823 7.630026 TGCTAAACTATGTGCTTCATAATTCG 58.370 34.615 4.37 0.00 38.38 3.34
4408 5824 7.279981 TGCTAAACTATGTGCTTCATAATTCGT 59.720 33.333 4.37 0.00 38.38 3.85
4409 5825 8.761497 GCTAAACTATGTGCTTCATAATTCGTA 58.239 33.333 4.37 0.00 38.38 3.43
4412 5828 8.487313 AACTATGTGCTTCATAATTCGTAACA 57.513 30.769 4.37 0.00 38.38 2.41
4413 5829 7.906160 ACTATGTGCTTCATAATTCGTAACAC 58.094 34.615 4.37 0.00 38.38 3.32
4414 5830 5.198116 TGTGCTTCATAATTCGTAACACG 57.802 39.130 0.00 0.00 44.19 4.49
4415 5831 5.579119 ATGTGCTTCATAATTCGTAACACGA 59.421 36.000 0.00 0.00 41.05 4.35
4416 5832 6.455113 ATGTGCTTCATAATTCGTAACACGAC 60.455 38.462 0.06 0.00 41.84 4.34
4417 5833 8.736499 ATGTGCTTCATAATTCGTAACACGACA 61.736 37.037 0.06 0.00 41.84 4.35
4428 5844 6.825284 TCGTAACACGACACTCAAAAATAA 57.175 33.333 0.00 0.00 46.73 1.40
4429 5845 7.410800 TCGTAACACGACACTCAAAAATAAT 57.589 32.000 0.00 0.00 46.73 1.28
4430 5846 7.853524 TCGTAACACGACACTCAAAAATAATT 58.146 30.769 0.00 0.00 46.73 1.40
4431 5847 8.336806 TCGTAACACGACACTCAAAAATAATTT 58.663 29.630 0.00 0.00 46.73 1.82
4432 5848 8.949953 CGTAACACGACACTCAAAAATAATTTT 58.050 29.630 0.00 0.00 46.05 1.82
4435 5851 9.790389 AACACGACACTCAAAAATAATTTTACA 57.210 25.926 0.00 0.00 36.62 2.41
4436 5852 9.228636 ACACGACACTCAAAAATAATTTTACAC 57.771 29.630 0.00 0.00 36.62 2.90
4437 5853 9.445786 CACGACACTCAAAAATAATTTTACACT 57.554 29.630 0.00 0.00 36.62 3.55
4438 5854 9.445786 ACGACACTCAAAAATAATTTTACACTG 57.554 29.630 0.00 0.00 36.62 3.66
4439 5855 8.901748 CGACACTCAAAAATAATTTTACACTGG 58.098 33.333 0.00 0.00 36.62 4.00
4440 5856 9.959749 GACACTCAAAAATAATTTTACACTGGA 57.040 29.630 0.00 0.00 36.62 3.86
4441 5857 9.744468 ACACTCAAAAATAATTTTACACTGGAC 57.256 29.630 0.00 0.00 36.62 4.02
4442 5858 9.743057 CACTCAAAAATAATTTTACACTGGACA 57.257 29.630 0.00 0.00 36.62 4.02
4450 5866 8.807948 ATAATTTTACACTGGACATTAGCAGT 57.192 30.769 0.00 0.00 0.00 4.40
4451 5867 7.524717 AATTTTACACTGGACATTAGCAGTT 57.475 32.000 0.00 0.00 0.00 3.16
4452 5868 6.554334 TTTTACACTGGACATTAGCAGTTC 57.446 37.500 0.00 0.00 0.00 3.01
4453 5869 5.483685 TTACACTGGACATTAGCAGTTCT 57.516 39.130 0.00 0.00 0.00 3.01
4454 5870 6.599356 TTACACTGGACATTAGCAGTTCTA 57.401 37.500 0.00 0.00 0.00 2.10
4455 5871 5.483685 ACACTGGACATTAGCAGTTCTAA 57.516 39.130 0.00 0.00 41.17 2.10
4456 5872 5.865085 ACACTGGACATTAGCAGTTCTAAA 58.135 37.500 0.00 0.00 40.38 1.85
4457 5873 5.934625 ACACTGGACATTAGCAGTTCTAAAG 59.065 40.000 0.00 0.00 40.38 1.85
4458 5874 5.934625 CACTGGACATTAGCAGTTCTAAAGT 59.065 40.000 0.00 0.00 40.64 2.66
4459 5875 5.934625 ACTGGACATTAGCAGTTCTAAAGTG 59.065 40.000 0.00 0.00 38.77 3.16
4460 5876 6.109156 TGGACATTAGCAGTTCTAAAGTGA 57.891 37.500 0.00 0.00 38.77 3.41
4461 5877 6.530120 TGGACATTAGCAGTTCTAAAGTGAA 58.470 36.000 0.00 0.00 38.77 3.18
4462 5878 7.168219 TGGACATTAGCAGTTCTAAAGTGAAT 58.832 34.615 0.00 0.00 38.77 2.57
4463 5879 7.334421 TGGACATTAGCAGTTCTAAAGTGAATC 59.666 37.037 0.00 0.00 38.77 2.52
4464 5880 7.550906 GGACATTAGCAGTTCTAAAGTGAATCT 59.449 37.037 0.00 0.00 38.77 2.40
4465 5881 8.485976 ACATTAGCAGTTCTAAAGTGAATCTC 57.514 34.615 0.00 0.00 40.38 2.75
4466 5882 7.276658 ACATTAGCAGTTCTAAAGTGAATCTCG 59.723 37.037 0.00 0.00 40.38 4.04
4467 5883 3.929610 AGCAGTTCTAAAGTGAATCTCGC 59.070 43.478 0.00 0.00 33.58 5.03
4468 5884 3.929610 GCAGTTCTAAAGTGAATCTCGCT 59.070 43.478 0.00 0.00 39.20 4.93
4469 5885 4.201666 GCAGTTCTAAAGTGAATCTCGCTG 60.202 45.833 0.00 0.00 37.29 5.18
4470 5886 5.164233 CAGTTCTAAAGTGAATCTCGCTGA 58.836 41.667 0.00 0.00 37.29 4.26
4471 5887 5.809562 CAGTTCTAAAGTGAATCTCGCTGAT 59.190 40.000 0.00 0.00 37.29 2.90
4472 5888 6.975197 CAGTTCTAAAGTGAATCTCGCTGATA 59.025 38.462 0.00 0.00 37.29 2.15
4473 5889 7.489435 CAGTTCTAAAGTGAATCTCGCTGATAA 59.511 37.037 0.00 0.00 37.29 1.75
4474 5890 8.200792 AGTTCTAAAGTGAATCTCGCTGATAAT 58.799 33.333 0.00 0.00 37.29 1.28
4475 5891 8.821894 GTTCTAAAGTGAATCTCGCTGATAATT 58.178 33.333 0.00 0.00 37.29 1.40
4476 5892 8.357796 TCTAAAGTGAATCTCGCTGATAATTG 57.642 34.615 0.00 0.00 37.29 2.32
4477 5893 5.415415 AAGTGAATCTCGCTGATAATTGC 57.585 39.130 0.00 0.00 37.29 3.56
4478 5894 4.701765 AGTGAATCTCGCTGATAATTGCT 58.298 39.130 0.00 0.00 35.63 3.91
4479 5895 4.749099 AGTGAATCTCGCTGATAATTGCTC 59.251 41.667 0.00 0.00 35.63 4.26
4480 5896 4.060900 TGAATCTCGCTGATAATTGCTCC 58.939 43.478 0.00 0.00 34.45 4.70
4481 5897 3.758755 ATCTCGCTGATAATTGCTCCA 57.241 42.857 0.00 0.00 32.79 3.86
4482 5898 3.758755 TCTCGCTGATAATTGCTCCAT 57.241 42.857 0.00 0.00 0.00 3.41
4483 5899 4.871933 TCTCGCTGATAATTGCTCCATA 57.128 40.909 0.00 0.00 0.00 2.74
4484 5900 5.411831 TCTCGCTGATAATTGCTCCATAT 57.588 39.130 0.00 0.00 0.00 1.78
4485 5901 5.414360 TCTCGCTGATAATTGCTCCATATC 58.586 41.667 0.00 0.00 0.00 1.63
4486 5902 5.186603 TCTCGCTGATAATTGCTCCATATCT 59.813 40.000 0.00 0.00 0.00 1.98
4487 5903 5.798132 TCGCTGATAATTGCTCCATATCTT 58.202 37.500 0.00 0.00 0.00 2.40
4488 5904 5.871524 TCGCTGATAATTGCTCCATATCTTC 59.128 40.000 0.00 0.00 0.00 2.87
4489 5905 5.064452 CGCTGATAATTGCTCCATATCTTCC 59.936 44.000 0.00 0.00 0.00 3.46
4490 5906 6.179040 GCTGATAATTGCTCCATATCTTCCT 58.821 40.000 0.00 0.00 0.00 3.36
4491 5907 6.315891 GCTGATAATTGCTCCATATCTTCCTC 59.684 42.308 0.00 0.00 0.00 3.71
4492 5908 7.565190 TGATAATTGCTCCATATCTTCCTCT 57.435 36.000 0.00 0.00 0.00 3.69
4493 5909 8.670521 TGATAATTGCTCCATATCTTCCTCTA 57.329 34.615 0.00 0.00 0.00 2.43
4494 5910 8.756927 TGATAATTGCTCCATATCTTCCTCTAG 58.243 37.037 0.00 0.00 0.00 2.43
4495 5911 4.881019 TTGCTCCATATCTTCCTCTAGC 57.119 45.455 0.00 0.00 0.00 3.42
4496 5912 3.849527 TGCTCCATATCTTCCTCTAGCA 58.150 45.455 0.00 0.00 36.45 3.49
4497 5913 4.423913 TGCTCCATATCTTCCTCTAGCAT 58.576 43.478 0.00 0.00 34.05 3.79
4498 5914 4.842948 TGCTCCATATCTTCCTCTAGCATT 59.157 41.667 0.00 0.00 34.05 3.56
4499 5915 5.177326 GCTCCATATCTTCCTCTAGCATTG 58.823 45.833 0.00 0.00 0.00 2.82
4500 5916 5.279910 GCTCCATATCTTCCTCTAGCATTGT 60.280 44.000 0.00 0.00 0.00 2.71
4501 5917 6.106648 TCCATATCTTCCTCTAGCATTGTG 57.893 41.667 0.00 0.00 0.00 3.33
4502 5918 5.012458 TCCATATCTTCCTCTAGCATTGTGG 59.988 44.000 0.00 0.00 0.00 4.17
4503 5919 2.698855 TCTTCCTCTAGCATTGTGGC 57.301 50.000 0.00 0.00 0.00 5.01
4504 5920 1.210478 TCTTCCTCTAGCATTGTGGCC 59.790 52.381 0.00 0.00 0.00 5.36
4505 5921 0.991146 TTCCTCTAGCATTGTGGCCA 59.009 50.000 0.00 0.00 0.00 5.36
4506 5922 0.991146 TCCTCTAGCATTGTGGCCAA 59.009 50.000 7.24 0.00 34.45 4.52
4507 5923 1.565759 TCCTCTAGCATTGTGGCCAAT 59.434 47.619 7.24 0.00 42.03 3.16
4519 5935 4.972591 GCCAATGTCTGCCACAAC 57.027 55.556 0.00 0.00 38.97 3.32
4520 5936 1.290009 GCCAATGTCTGCCACAACC 59.710 57.895 0.00 0.00 38.97 3.77
4521 5937 1.181098 GCCAATGTCTGCCACAACCT 61.181 55.000 0.00 0.00 38.97 3.50
4522 5938 0.599558 CCAATGTCTGCCACAACCTG 59.400 55.000 0.00 0.00 38.97 4.00
4523 5939 1.321474 CAATGTCTGCCACAACCTGT 58.679 50.000 0.00 0.00 38.97 4.00
4524 5940 1.682854 CAATGTCTGCCACAACCTGTT 59.317 47.619 0.00 0.00 38.97 3.16
4525 5941 2.071778 ATGTCTGCCACAACCTGTTT 57.928 45.000 0.00 0.00 38.97 2.83
4526 5942 1.102154 TGTCTGCCACAACCTGTTTG 58.898 50.000 0.00 0.00 41.49 2.93
4527 5943 0.249031 GTCTGCCACAACCTGTTTGC 60.249 55.000 0.00 0.00 39.01 3.68
4528 5944 0.682532 TCTGCCACAACCTGTTTGCA 60.683 50.000 0.00 0.00 39.01 4.08
4529 5945 0.249155 CTGCCACAACCTGTTTGCAG 60.249 55.000 11.51 11.51 43.01 4.41
4530 5946 0.969917 TGCCACAACCTGTTTGCAGT 60.970 50.000 0.00 0.00 41.02 4.40
4531 5947 0.249031 GCCACAACCTGTTTGCAGTC 60.249 55.000 0.00 0.00 41.02 3.51
4532 5948 1.392589 CCACAACCTGTTTGCAGTCT 58.607 50.000 0.00 0.00 41.02 3.24
4533 5949 1.066002 CCACAACCTGTTTGCAGTCTG 59.934 52.381 0.00 0.00 41.02 3.51
4534 5950 2.016318 CACAACCTGTTTGCAGTCTGA 58.984 47.619 3.32 0.00 41.02 3.27
4535 5951 2.620115 CACAACCTGTTTGCAGTCTGAT 59.380 45.455 3.32 0.00 41.02 2.90
4536 5952 2.620115 ACAACCTGTTTGCAGTCTGATG 59.380 45.455 3.32 0.00 41.02 3.07
4537 5953 1.242076 ACCTGTTTGCAGTCTGATGC 58.758 50.000 3.32 5.49 46.68 3.91
4538 5954 1.202855 ACCTGTTTGCAGTCTGATGCT 60.203 47.619 3.32 0.00 46.63 3.79
4539 5955 2.038952 ACCTGTTTGCAGTCTGATGCTA 59.961 45.455 3.32 3.89 46.63 3.49
4540 5956 3.276857 CCTGTTTGCAGTCTGATGCTAT 58.723 45.455 3.32 0.00 46.63 2.97
4541 5957 3.064958 CCTGTTTGCAGTCTGATGCTATG 59.935 47.826 3.32 0.00 46.63 2.23
4542 5958 3.937079 CTGTTTGCAGTCTGATGCTATGA 59.063 43.478 3.32 0.00 46.63 2.15
4543 5959 3.686241 TGTTTGCAGTCTGATGCTATGAC 59.314 43.478 3.32 0.00 46.63 3.06
4544 5960 2.214387 TGCAGTCTGATGCTATGACG 57.786 50.000 3.32 0.00 46.63 4.35
4545 5961 1.202452 TGCAGTCTGATGCTATGACGG 60.202 52.381 3.32 0.00 46.63 4.79
4546 5962 1.067669 GCAGTCTGATGCTATGACGGA 59.932 52.381 3.32 0.00 43.07 4.69
4547 5963 2.861750 GCAGTCTGATGCTATGACGGAG 60.862 54.545 3.32 0.00 43.07 4.63
4548 5964 5.348794 GCAGTCTGATGCTATGACGGAGT 62.349 52.174 3.32 0.00 44.10 3.85
4549 5965 6.756157 GCAGTCTGATGCTATGACGGAGTT 62.756 50.000 3.32 0.00 42.22 3.01
4563 5979 4.487714 ACGGAGTTGTGGATATTCATGT 57.512 40.909 0.00 0.00 37.78 3.21
4564 5980 4.442706 ACGGAGTTGTGGATATTCATGTC 58.557 43.478 0.00 0.00 37.78 3.06
4565 5981 4.162320 ACGGAGTTGTGGATATTCATGTCT 59.838 41.667 0.00 0.00 37.78 3.41
4566 5982 5.118990 CGGAGTTGTGGATATTCATGTCTT 58.881 41.667 0.00 0.00 0.00 3.01
4567 5983 5.235186 CGGAGTTGTGGATATTCATGTCTTC 59.765 44.000 0.00 0.00 0.00 2.87
4568 5984 5.529060 GGAGTTGTGGATATTCATGTCTTCC 59.471 44.000 0.00 0.00 0.00 3.46
4569 5985 5.118990 AGTTGTGGATATTCATGTCTTCCG 58.881 41.667 0.00 0.00 0.00 4.30
4570 5986 3.466836 TGTGGATATTCATGTCTTCCGC 58.533 45.455 11.00 11.00 37.47 5.54
4571 5987 2.808543 GTGGATATTCATGTCTTCCGCC 59.191 50.000 0.00 0.00 32.13 6.13
4572 5988 2.437651 TGGATATTCATGTCTTCCGCCA 59.562 45.455 0.00 0.00 0.00 5.69
4573 5989 3.118075 TGGATATTCATGTCTTCCGCCAA 60.118 43.478 0.00 0.00 0.00 4.52
4574 5990 3.499918 GGATATTCATGTCTTCCGCCAAG 59.500 47.826 0.00 0.00 0.00 3.61
4575 5991 1.098050 ATTCATGTCTTCCGCCAAGC 58.902 50.000 0.00 0.00 31.26 4.01
4576 5992 0.250684 TTCATGTCTTCCGCCAAGCA 60.251 50.000 0.00 0.00 31.26 3.91
4577 5993 0.955428 TCATGTCTTCCGCCAAGCAC 60.955 55.000 0.00 0.00 31.26 4.40
4578 5994 1.073025 ATGTCTTCCGCCAAGCACA 59.927 52.632 0.00 0.00 31.26 4.57
4579 5995 0.537143 ATGTCTTCCGCCAAGCACAA 60.537 50.000 0.00 0.00 30.67 3.33
4580 5996 1.282875 GTCTTCCGCCAAGCACAAC 59.717 57.895 0.00 0.00 31.26 3.32
4581 5997 2.250939 TCTTCCGCCAAGCACAACG 61.251 57.895 0.00 0.00 31.26 4.10
4582 5998 3.879351 CTTCCGCCAAGCACAACGC 62.879 63.158 0.00 0.00 42.91 4.84
4585 6001 4.389576 CGCCAAGCACAACGCCTC 62.390 66.667 0.00 0.00 44.04 4.70
4586 6002 3.286751 GCCAAGCACAACGCCTCA 61.287 61.111 0.00 0.00 44.04 3.86
4587 6003 2.639286 CCAAGCACAACGCCTCAC 59.361 61.111 0.00 0.00 44.04 3.51
4588 6004 2.186160 CCAAGCACAACGCCTCACA 61.186 57.895 0.00 0.00 44.04 3.58
4589 6005 1.280746 CAAGCACAACGCCTCACAG 59.719 57.895 0.00 0.00 44.04 3.66
4590 6006 2.546494 AAGCACAACGCCTCACAGC 61.546 57.895 0.00 0.00 44.04 4.40
4591 6007 3.279116 GCACAACGCCTCACAGCA 61.279 61.111 0.00 0.00 32.94 4.41
4592 6008 2.620112 GCACAACGCCTCACAGCAT 61.620 57.895 0.00 0.00 32.94 3.79
4593 6009 1.208358 CACAACGCCTCACAGCATG 59.792 57.895 0.00 0.00 46.00 4.06
4594 6010 2.177531 CAACGCCTCACAGCATGC 59.822 61.111 10.51 10.51 42.53 4.06
4595 6011 2.033141 AACGCCTCACAGCATGCT 59.967 55.556 16.30 16.30 42.53 3.79
4596 6012 1.020861 CAACGCCTCACAGCATGCTA 61.021 55.000 22.19 3.82 42.53 3.49
4597 6013 0.107508 AACGCCTCACAGCATGCTAT 60.108 50.000 22.19 6.15 42.53 2.97
4598 6014 0.531532 ACGCCTCACAGCATGCTATC 60.532 55.000 22.19 5.04 42.53 2.08
4599 6015 1.554891 CGCCTCACAGCATGCTATCG 61.555 60.000 22.19 11.18 42.53 2.92
4600 6016 1.839598 GCCTCACAGCATGCTATCGC 61.840 60.000 22.19 13.67 42.53 4.58
4601 6017 0.249784 CCTCACAGCATGCTATCGCT 60.250 55.000 22.19 0.00 42.53 4.93
4602 6018 1.579698 CTCACAGCATGCTATCGCTT 58.420 50.000 22.19 0.00 42.53 4.68
4603 6019 1.526041 CTCACAGCATGCTATCGCTTC 59.474 52.381 22.19 0.00 42.53 3.86
4604 6020 0.585357 CACAGCATGCTATCGCTTCC 59.415 55.000 22.19 0.00 42.53 3.46
4605 6021 0.178767 ACAGCATGCTATCGCTTCCA 59.821 50.000 22.19 0.00 42.53 3.53
4606 6022 1.302366 CAGCATGCTATCGCTTCCAA 58.698 50.000 22.19 0.00 35.96 3.53
4607 6023 1.672363 CAGCATGCTATCGCTTCCAAA 59.328 47.619 22.19 0.00 35.96 3.28
4608 6024 1.945394 AGCATGCTATCGCTTCCAAAG 59.055 47.619 21.21 0.00 33.81 2.77
4609 6025 1.942657 GCATGCTATCGCTTCCAAAGA 59.057 47.619 11.37 0.00 36.97 2.52
4610 6026 2.286654 GCATGCTATCGCTTCCAAAGAC 60.287 50.000 11.37 0.00 36.97 3.01
4611 6027 1.640428 TGCTATCGCTTCCAAAGACG 58.360 50.000 0.00 0.00 36.97 4.18
4612 6028 0.301987 GCTATCGCTTCCAAAGACGC 59.698 55.000 0.00 0.00 34.04 5.19
4613 6029 1.640428 CTATCGCTTCCAAAGACGCA 58.360 50.000 0.00 0.00 37.11 5.24
4614 6030 1.590238 CTATCGCTTCCAAAGACGCAG 59.410 52.381 0.00 0.00 37.11 5.18
4615 6031 1.021390 ATCGCTTCCAAAGACGCAGG 61.021 55.000 0.00 0.00 37.11 4.85
4616 6032 2.680913 CGCTTCCAAAGACGCAGGG 61.681 63.158 0.00 0.00 37.11 4.45
4617 6033 1.600916 GCTTCCAAAGACGCAGGGT 60.601 57.895 0.00 0.00 37.24 4.34
4618 6034 1.578206 GCTTCCAAAGACGCAGGGTC 61.578 60.000 9.63 9.63 46.45 4.46
4625 6041 2.734591 GACGCAGGGTCAGTGACA 59.265 61.111 24.20 0.00 45.36 3.58
4626 6042 1.664965 GACGCAGGGTCAGTGACAC 60.665 63.158 24.20 21.43 45.36 3.67
4627 6043 2.357517 CGCAGGGTCAGTGACACC 60.358 66.667 22.01 19.77 36.49 4.16
4632 6048 3.885814 GGTCAGTGACACCCTCCA 58.114 61.111 24.20 0.00 33.68 3.86
4633 6049 2.142220 GGTCAGTGACACCCTCCAA 58.858 57.895 24.20 0.00 33.68 3.53
4634 6050 0.472471 GGTCAGTGACACCCTCCAAA 59.528 55.000 24.20 0.00 33.68 3.28
4635 6051 1.133915 GGTCAGTGACACCCTCCAAAA 60.134 52.381 24.20 0.00 33.68 2.44
4636 6052 1.947456 GTCAGTGACACCCTCCAAAAC 59.053 52.381 18.54 0.00 32.09 2.43
4637 6053 1.133915 TCAGTGACACCCTCCAAAACC 60.134 52.381 0.84 0.00 0.00 3.27
4638 6054 0.923358 AGTGACACCCTCCAAAACCA 59.077 50.000 0.84 0.00 0.00 3.67
4639 6055 1.286553 AGTGACACCCTCCAAAACCAA 59.713 47.619 0.84 0.00 0.00 3.67
4640 6056 1.407618 GTGACACCCTCCAAAACCAAC 59.592 52.381 0.00 0.00 0.00 3.77
4641 6057 0.666374 GACACCCTCCAAAACCAACG 59.334 55.000 0.00 0.00 0.00 4.10
4642 6058 1.362355 CACCCTCCAAAACCAACGC 59.638 57.895 0.00 0.00 0.00 4.84
4643 6059 1.830847 ACCCTCCAAAACCAACGCC 60.831 57.895 0.00 0.00 0.00 5.68
4644 6060 2.642700 CCTCCAAAACCAACGCCG 59.357 61.111 0.00 0.00 0.00 6.46
4645 6061 1.894756 CCTCCAAAACCAACGCCGA 60.895 57.895 0.00 0.00 0.00 5.54
4646 6062 1.574428 CTCCAAAACCAACGCCGAG 59.426 57.895 0.00 0.00 0.00 4.63
4647 6063 1.852067 CTCCAAAACCAACGCCGAGG 61.852 60.000 0.00 0.00 0.00 4.63
4648 6064 2.050442 CAAAACCAACGCCGAGGC 60.050 61.111 3.59 3.59 37.85 4.70
4649 6065 3.292159 AAAACCAACGCCGAGGCC 61.292 61.111 8.72 0.00 37.98 5.19
4655 6071 3.404438 AACGCCGAGGCCCCAATA 61.404 61.111 8.72 0.00 37.98 1.90
4656 6072 2.752807 AACGCCGAGGCCCCAATAT 61.753 57.895 8.72 0.00 37.98 1.28
4657 6073 1.412453 AACGCCGAGGCCCCAATATA 61.412 55.000 8.72 0.00 37.98 0.86
4658 6074 1.198759 ACGCCGAGGCCCCAATATAT 61.199 55.000 8.72 0.00 37.98 0.86
4659 6075 0.828022 CGCCGAGGCCCCAATATATA 59.172 55.000 8.72 0.00 37.98 0.86
4660 6076 1.416401 CGCCGAGGCCCCAATATATAT 59.584 52.381 8.72 0.00 37.98 0.86
4661 6077 2.631062 CGCCGAGGCCCCAATATATATA 59.369 50.000 8.72 0.00 37.98 0.86
4662 6078 3.260884 CGCCGAGGCCCCAATATATATAT 59.739 47.826 8.72 0.00 37.98 0.86
4663 6079 4.579869 GCCGAGGCCCCAATATATATATG 58.420 47.826 6.00 1.59 34.56 1.78
4720 6197 4.055360 CCCATTGCATGCATGAACTTATG 58.945 43.478 30.64 19.13 0.00 1.90
4721 6198 4.442332 CCCATTGCATGCATGAACTTATGT 60.442 41.667 30.64 3.65 0.00 2.29
4723 6200 6.452242 CCATTGCATGCATGAACTTATGTAT 58.548 36.000 30.64 5.36 34.34 2.29
4724 6201 6.364976 CCATTGCATGCATGAACTTATGTATG 59.635 38.462 30.64 17.05 46.99 2.39
4725 6202 6.453926 TTGCATGCATGAACTTATGTATGT 57.546 33.333 30.64 0.00 46.39 2.29
4726 6203 5.823353 TGCATGCATGAACTTATGTATGTG 58.177 37.500 30.64 0.00 46.39 3.21
4727 6204 4.678287 GCATGCATGAACTTATGTATGTGC 59.322 41.667 30.64 6.44 46.39 4.57
4728 6205 5.733937 GCATGCATGAACTTATGTATGTGCA 60.734 40.000 30.64 13.43 46.39 4.57
4729 6206 5.233957 TGCATGAACTTATGTATGTGCAC 57.766 39.130 10.75 10.75 34.30 4.57
4730 6207 4.699257 TGCATGAACTTATGTATGTGCACA 59.301 37.500 24.08 24.08 34.30 4.57
4731 6208 5.182760 TGCATGAACTTATGTATGTGCACAA 59.817 36.000 25.72 8.09 34.30 3.33
4732 6209 6.092092 GCATGAACTTATGTATGTGCACAAA 58.908 36.000 25.72 12.21 31.51 2.83
4733 6210 6.033831 GCATGAACTTATGTATGTGCACAAAC 59.966 38.462 25.72 8.64 31.51 2.93
4734 6211 5.684850 TGAACTTATGTATGTGCACAAACG 58.315 37.500 25.72 10.40 30.84 3.60
4744 6221 1.272784 TGCACAAACGCGTACGAGAG 61.273 55.000 25.90 15.90 43.93 3.20
4759 6236 4.904253 ACGAGAGCTAATGTACTTCCTC 57.096 45.455 0.00 0.00 0.00 3.71
4764 6241 6.215495 AGAGCTAATGTACTTCCTCTGTTC 57.785 41.667 0.00 0.00 29.41 3.18
4765 6242 5.717178 AGAGCTAATGTACTTCCTCTGTTCA 59.283 40.000 0.00 0.00 29.41 3.18
4766 6243 6.382570 AGAGCTAATGTACTTCCTCTGTTCAT 59.617 38.462 0.00 0.00 29.41 2.57
4795 6272 7.696618 ATAGGGCATGCATATAATTCTAGGA 57.303 36.000 21.36 0.00 0.00 2.94
4838 6315 8.955061 AAATATGCGTATATGTCATCAAAAGC 57.045 30.769 6.78 0.00 30.00 3.51
4859 6336 5.247862 AGCATATCATTGGATTCGTATGCA 58.752 37.500 15.04 1.55 41.23 3.96
4863 6340 4.135747 TCATTGGATTCGTATGCAGACA 57.864 40.909 12.67 0.00 33.37 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.216257 ACAAAATCACATCGAGGAAAGGTG 59.784 41.667 3.06 0.00 0.00 4.00
1 2 4.398319 ACAAAATCACATCGAGGAAAGGT 58.602 39.130 3.06 0.00 0.00 3.50
2 3 5.048782 TCAACAAAATCACATCGAGGAAAGG 60.049 40.000 3.06 0.00 0.00 3.11
7 8 5.362556 AAGTCAACAAAATCACATCGAGG 57.637 39.130 0.00 0.00 0.00 4.63
74 75 3.225940 GTGATCATTGGAGGGGATTTCC 58.774 50.000 0.00 0.00 35.20 3.13
83 84 2.540973 CGCAAGCATGTGATCATTGGAG 60.541 50.000 0.00 0.00 39.48 3.86
141 313 0.937699 TTACATATCGCGACCGCTGC 60.938 55.000 12.93 0.00 39.32 5.25
177 349 7.603784 GCCTAAAATGACATGGAAGAAATTGTT 59.396 33.333 0.00 0.00 0.00 2.83
308 482 3.550437 ATCCAGTAGCAACATGAGACC 57.450 47.619 0.00 0.00 0.00 3.85
323 497 7.340122 TCTTGTTGTACTCTCTCATATCCAG 57.660 40.000 0.00 0.00 0.00 3.86
403 577 6.791867 TCTACCATAATAGTGTGTTCAGCT 57.208 37.500 0.00 0.00 0.00 4.24
410 584 9.684448 CACTAGTGATTCTACCATAATAGTGTG 57.316 37.037 18.45 0.00 0.00 3.82
449 623 8.557592 TTCCTATAGAGCTAACGATCGATTTA 57.442 34.615 24.34 10.01 0.00 1.40
483 657 6.183360 CCTCACATCAAACAACATGGATAGAC 60.183 42.308 0.00 0.00 0.00 2.59
508 682 0.529378 ACACGATGTTCGACCTACCC 59.471 55.000 3.62 0.00 43.74 3.69
557 731 6.147656 GGATCATACGATTGCATACATGAACA 59.852 38.462 0.00 0.00 29.66 3.18
560 734 6.041423 AGGATCATACGATTGCATACATGA 57.959 37.500 0.00 0.00 29.66 3.07
561 735 5.292834 GGAGGATCATACGATTGCATACATG 59.707 44.000 0.00 0.00 36.25 3.21
562 736 5.046376 TGGAGGATCATACGATTGCATACAT 60.046 40.000 0.00 0.00 36.25 2.29
643 1168 1.479709 AGGGGTTCAGATCAGAGACG 58.520 55.000 0.00 0.00 0.00 4.18
704 1229 5.808030 TGTGTTAGTTTATGCAATCGATCGA 59.192 36.000 21.86 21.86 0.00 3.59
729 1254 2.592102 ATATAGTGCCATGGCCTTGG 57.408 50.000 33.44 29.23 41.09 3.61
999 1524 2.557924 CCCAAAGTTGCTTGCACTCATA 59.442 45.455 0.00 0.00 0.00 2.15
1110 1635 2.281484 GGTTGCCTCGGCTTGTCA 60.281 61.111 9.65 0.00 42.51 3.58
1187 1712 1.918800 GGAGGGTGGTGCTGGTACT 60.919 63.158 0.00 0.00 0.00 2.73
1330 1855 2.238646 TCAGACAGCCCGGTTAATGAAT 59.761 45.455 0.00 0.00 0.00 2.57
1356 1881 8.377799 TCATGCACCTAATAGACATGTATTGAT 58.622 33.333 0.00 0.00 39.27 2.57
1361 1886 8.432013 AGAAATCATGCACCTAATAGACATGTA 58.568 33.333 0.00 0.00 39.27 2.29
1440 1969 3.227147 CAGTGAGTAGTTCAACGACGAG 58.773 50.000 0.00 0.00 37.61 4.18
1467 1996 3.066233 GAAGGAGGAGGACGGCGAC 62.066 68.421 16.62 7.58 0.00 5.19
1504 2111 4.152759 TCCTCGGTTTAGTAAAATTGCACG 59.847 41.667 0.00 0.00 0.00 5.34
1518 2125 5.001874 GGTGAAGAACTTAATCCTCGGTTT 58.998 41.667 0.00 0.00 0.00 3.27
1522 2129 5.120830 CACTTGGTGAAGAACTTAATCCTCG 59.879 44.000 0.00 0.00 35.23 4.63
1664 2271 8.902806 TCAACCAAACTATCCATAATGAATGAC 58.097 33.333 0.00 0.00 37.86 3.06
1711 2318 6.053632 TGGCTCTTTGTGATAAGATTGAGA 57.946 37.500 0.00 0.00 33.89 3.27
1741 2348 7.752239 AGAAAATTGTGCAGAAAAGATCATACG 59.248 33.333 0.00 0.00 0.00 3.06
1742 2349 8.976986 AGAAAATTGTGCAGAAAAGATCATAC 57.023 30.769 0.00 0.00 0.00 2.39
1771 2379 4.026052 TGAATGGTCTGATGAGTAGCAGA 58.974 43.478 0.00 0.00 46.33 4.26
1772 2380 4.118410 GTGAATGGTCTGATGAGTAGCAG 58.882 47.826 0.00 0.00 41.62 4.24
1773 2381 3.515104 TGTGAATGGTCTGATGAGTAGCA 59.485 43.478 0.00 0.00 0.00 3.49
1834 2445 3.128068 ACGTACGATATGACTCAAGCACA 59.872 43.478 24.41 0.00 0.00 4.57
1843 2454 3.176708 ACAACTGCACGTACGATATGAC 58.823 45.455 24.41 7.00 0.00 3.06
1846 2457 3.302434 CGAAACAACTGCACGTACGATAT 59.698 43.478 24.41 0.00 0.00 1.63
1867 2478 4.258543 ACCCCACTTACATTTGTCATACG 58.741 43.478 0.00 0.00 0.00 3.06
1886 2497 1.006832 CCGTGTCGATGATCAAACCC 58.993 55.000 0.00 0.00 0.00 4.11
1904 2515 7.787725 ATAAATTGATTTCACCTACGAGACC 57.212 36.000 0.00 0.00 0.00 3.85
1966 2577 6.857437 TTCACTCATCTCTGGATTTCTGTA 57.143 37.500 0.00 0.00 0.00 2.74
2035 2646 7.880160 ATACCAAAAGATTTCGATGAATCCA 57.120 32.000 6.27 0.00 36.84 3.41
2053 2664 8.465999 CCAGTTCAGTAAAATTGCATATACCAA 58.534 33.333 0.00 0.00 0.00 3.67
2149 2762 9.590451 ACAATGATTAACTGAGCAATATTTTGG 57.410 29.630 0.00 0.00 33.22 3.28
2163 2776 8.784043 GGATTAAGGCGATAACAATGATTAACT 58.216 33.333 0.00 0.00 0.00 2.24
2190 2803 4.920376 ACAATAATCATTAACGCAGCCAC 58.080 39.130 0.00 0.00 0.00 5.01
2196 2811 8.801715 AATGAATGGACAATAATCATTAACGC 57.198 30.769 0.00 0.00 38.55 4.84
2288 2903 8.166726 AGATAGATTTTCTGTCCAACTTTTCCT 58.833 33.333 0.00 0.00 35.52 3.36
2387 3002 6.622245 GCATTATTGATACAGCTAGCACATGG 60.622 42.308 18.83 3.21 0.00 3.66
2471 3086 4.336713 GCAATGATACTCTTGTTCTTCCCC 59.663 45.833 0.00 0.00 0.00 4.81
2802 3417 3.763897 AGTTGCTCCATGGTAATTCAACC 59.236 43.478 12.58 5.53 40.19 3.77
2805 3420 4.227300 AGGTAGTTGCTCCATGGTAATTCA 59.773 41.667 12.58 1.04 0.00 2.57
2872 3487 0.977395 CCTTGGGTTCGAAGAGAGGT 59.023 55.000 0.00 0.00 38.43 3.85
2935 3550 6.758149 CAGCATGCATCATTTTTAACAGTTC 58.242 36.000 21.98 0.00 0.00 3.01
3003 3641 9.513727 GTATCTCATGCATGTGTGTATATCTAG 57.486 37.037 25.43 11.31 0.00 2.43
3134 3772 8.148351 AGGAGTAGGAAAAACAATTAAAAAGGC 58.852 33.333 0.00 0.00 0.00 4.35
3163 3801 9.962783 ATGTATACCAAATAAACTCGAGAGTAC 57.037 33.333 21.68 5.60 41.58 2.73
3229 3868 2.444696 CACCCCCAAGCAATCCCA 59.555 61.111 0.00 0.00 0.00 4.37
3231 3870 2.364186 CCCACCCCCAAGCAATCC 60.364 66.667 0.00 0.00 0.00 3.01
3244 3883 6.681865 GCATTAACACATTGTATTACCCCCAC 60.682 42.308 0.00 0.00 0.00 4.61
3375 4685 6.546972 TGAATCAAACGTGCACTACAATTA 57.453 33.333 16.19 0.00 0.00 1.40
3385 4695 7.906160 ACTAGTGTATATTGAATCAAACGTGC 58.094 34.615 0.00 0.00 0.00 5.34
3584 4900 6.332735 AGAAAAATCTAGGAACTGGTTTGC 57.667 37.500 0.00 0.00 41.52 3.68
3594 4912 6.655078 AGCAGCAAAAAGAAAAATCTAGGA 57.345 33.333 0.00 0.00 0.00 2.94
3647 4966 4.037923 CACATTGTTGGACTGGCTTTAAGT 59.962 41.667 0.00 0.00 0.00 2.24
3687 5021 6.978674 TGATTGGATCGGAGTAAACTCTAT 57.021 37.500 9.84 4.54 42.48 1.98
3754 5088 9.829507 TGAAACAAATGGAGTCAACATATTTTT 57.170 25.926 0.00 0.00 0.00 1.94
3757 5091 8.587608 ACATGAAACAAATGGAGTCAACATATT 58.412 29.630 0.00 0.00 0.00 1.28
3791 5125 3.013921 TGTCGCCATTTGATTTAGGTCC 58.986 45.455 0.00 0.00 0.00 4.46
3874 5208 3.904717 TGGACATGTTTAACAAGGTGGT 58.095 40.909 0.66 0.00 0.00 4.16
3881 5215 3.188254 CACGAGCATGGACATGTTTAACA 59.812 43.478 13.29 0.00 40.80 2.41
3901 5238 5.091910 CATCATATCGATGCATATGCCAC 57.908 43.478 24.54 16.42 44.95 5.01
3970 5322 3.317149 AGCATCCATCACCAAATCAATCG 59.683 43.478 0.00 0.00 0.00 3.34
4071 5446 1.449353 CAGGATCAGTGGCCTAGGC 59.551 63.158 26.55 26.55 41.06 3.93
4110 5485 4.927425 ACGTACCTTGTCATCATACAACAC 59.073 41.667 0.00 0.00 35.56 3.32
4192 5567 6.615088 TCCTACGCATCCTTACGATATTAAC 58.385 40.000 0.00 0.00 0.00 2.01
4218 5597 2.310538 CACCTTTTTGAGCCAGGAGTT 58.689 47.619 0.00 0.00 0.00 3.01
4306 5722 6.800072 AAAGTTGTTTATCACCCCTCAAAA 57.200 33.333 0.00 0.00 0.00 2.44
4307 5723 7.039363 CCATAAAGTTGTTTATCACCCCTCAAA 60.039 37.037 0.00 0.00 36.83 2.69
4308 5724 6.435904 CCATAAAGTTGTTTATCACCCCTCAA 59.564 38.462 0.00 0.00 36.83 3.02
4309 5725 5.949354 CCATAAAGTTGTTTATCACCCCTCA 59.051 40.000 0.00 0.00 36.83 3.86
4311 5727 6.147437 TCCATAAAGTTGTTTATCACCCCT 57.853 37.500 0.00 0.00 36.83 4.79
4312 5728 6.624204 CGTTCCATAAAGTTGTTTATCACCCC 60.624 42.308 0.00 0.00 36.83 4.95
4313 5729 6.319399 CGTTCCATAAAGTTGTTTATCACCC 58.681 40.000 0.00 0.00 36.83 4.61
4315 5731 5.798434 GGCGTTCCATAAAGTTGTTTATCAC 59.202 40.000 0.00 0.00 36.83 3.06
4316 5732 5.473846 TGGCGTTCCATAAAGTTGTTTATCA 59.526 36.000 0.00 0.00 36.83 2.15
4318 5734 5.968528 TGGCGTTCCATAAAGTTGTTTAT 57.031 34.783 0.00 0.00 39.09 1.40
4319 5735 5.769484 TTGGCGTTCCATAAAGTTGTTTA 57.231 34.783 0.00 0.00 43.05 2.01
4320 5736 4.657436 TTGGCGTTCCATAAAGTTGTTT 57.343 36.364 0.00 0.00 43.05 2.83
4322 5738 3.243602 GGTTTGGCGTTCCATAAAGTTGT 60.244 43.478 0.00 0.00 43.05 3.32
4323 5739 3.243569 TGGTTTGGCGTTCCATAAAGTTG 60.244 43.478 0.00 0.00 43.05 3.16
4324 5740 2.959707 TGGTTTGGCGTTCCATAAAGTT 59.040 40.909 0.00 0.00 43.05 2.66
4325 5741 2.556622 CTGGTTTGGCGTTCCATAAAGT 59.443 45.455 0.00 0.00 43.05 2.66
4326 5742 2.817258 TCTGGTTTGGCGTTCCATAAAG 59.183 45.455 0.00 0.00 43.05 1.85
4327 5743 2.554893 GTCTGGTTTGGCGTTCCATAAA 59.445 45.455 0.00 0.00 43.05 1.40
4328 5744 2.156098 GTCTGGTTTGGCGTTCCATAA 58.844 47.619 0.00 0.00 43.05 1.90
4329 5745 1.816074 GTCTGGTTTGGCGTTCCATA 58.184 50.000 0.00 0.00 43.05 2.74
4330 5746 1.234615 CGTCTGGTTTGGCGTTCCAT 61.235 55.000 0.00 0.00 43.05 3.41
4331 5747 1.890041 CGTCTGGTTTGGCGTTCCA 60.890 57.895 0.00 0.00 41.55 3.53
4332 5748 1.890510 ACGTCTGGTTTGGCGTTCC 60.891 57.895 0.00 0.00 33.54 3.62
4333 5749 1.155424 TCACGTCTGGTTTGGCGTTC 61.155 55.000 0.00 0.00 35.25 3.95
4334 5750 1.153329 TCACGTCTGGTTTGGCGTT 60.153 52.632 0.00 0.00 35.25 4.84
4335 5751 1.885850 GTCACGTCTGGTTTGGCGT 60.886 57.895 0.00 0.00 38.14 5.68
4336 5752 1.433053 TTGTCACGTCTGGTTTGGCG 61.433 55.000 0.00 0.00 0.00 5.69
4337 5753 0.028902 GTTGTCACGTCTGGTTTGGC 59.971 55.000 0.00 0.00 0.00 4.52
4338 5754 0.661020 GGTTGTCACGTCTGGTTTGG 59.339 55.000 0.00 0.00 0.00 3.28
4339 5755 1.330521 CTGGTTGTCACGTCTGGTTTG 59.669 52.381 0.00 0.00 0.00 2.93
4340 5756 1.663695 CTGGTTGTCACGTCTGGTTT 58.336 50.000 0.00 0.00 0.00 3.27
4341 5757 0.179056 CCTGGTTGTCACGTCTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
4342 5758 1.046472 TCCTGGTTGTCACGTCTGGT 61.046 55.000 0.00 0.00 0.00 4.00
4343 5759 0.600255 GTCCTGGTTGTCACGTCTGG 60.600 60.000 0.00 0.00 0.00 3.86
4344 5760 0.600255 GGTCCTGGTTGTCACGTCTG 60.600 60.000 0.00 0.00 0.00 3.51
4345 5761 0.759436 AGGTCCTGGTTGTCACGTCT 60.759 55.000 0.00 0.00 0.00 4.18
4346 5762 0.319641 GAGGTCCTGGTTGTCACGTC 60.320 60.000 0.00 0.00 0.00 4.34
4347 5763 0.759436 AGAGGTCCTGGTTGTCACGT 60.759 55.000 0.00 0.00 0.00 4.49
4348 5764 1.202582 CTAGAGGTCCTGGTTGTCACG 59.797 57.143 0.00 0.00 0.00 4.35
4349 5765 2.526432 TCTAGAGGTCCTGGTTGTCAC 58.474 52.381 0.00 0.00 0.00 3.67
4350 5766 2.992847 TCTAGAGGTCCTGGTTGTCA 57.007 50.000 0.00 0.00 0.00 3.58
4351 5767 3.833070 TCTTTCTAGAGGTCCTGGTTGTC 59.167 47.826 0.00 0.00 0.00 3.18
4352 5768 3.858135 TCTTTCTAGAGGTCCTGGTTGT 58.142 45.455 0.00 0.00 0.00 3.32
4353 5769 4.891992 TTCTTTCTAGAGGTCCTGGTTG 57.108 45.455 0.00 0.00 0.00 3.77
4354 5770 6.455690 AAATTCTTTCTAGAGGTCCTGGTT 57.544 37.500 0.00 0.00 0.00 3.67
4355 5771 6.455690 AAAATTCTTTCTAGAGGTCCTGGT 57.544 37.500 0.00 0.00 0.00 4.00
4380 5796 9.787532 GAATTATGAAGCACATAGTTTAGCAAA 57.212 29.630 10.91 0.00 40.03 3.68
4381 5797 8.122330 CGAATTATGAAGCACATAGTTTAGCAA 58.878 33.333 10.91 0.00 40.03 3.91
4382 5798 7.279981 ACGAATTATGAAGCACATAGTTTAGCA 59.720 33.333 10.91 0.00 40.03 3.49
4383 5799 7.630924 ACGAATTATGAAGCACATAGTTTAGC 58.369 34.615 10.91 0.00 40.03 3.09
4386 5802 8.941977 TGTTACGAATTATGAAGCACATAGTTT 58.058 29.630 10.91 6.87 40.03 2.66
4387 5803 8.388103 GTGTTACGAATTATGAAGCACATAGTT 58.612 33.333 9.91 9.91 41.70 2.24
4388 5804 7.253983 CGTGTTACGAATTATGAAGCACATAGT 60.254 37.037 0.00 0.12 46.05 2.12
4389 5805 7.057402 CGTGTTACGAATTATGAAGCACATAG 58.943 38.462 0.00 0.00 46.05 2.23
4390 5806 6.928820 CGTGTTACGAATTATGAAGCACATA 58.071 36.000 0.00 0.00 46.05 2.29
4391 5807 5.795766 CGTGTTACGAATTATGAAGCACAT 58.204 37.500 0.00 2.31 46.05 3.21
4392 5808 5.198116 CGTGTTACGAATTATGAAGCACA 57.802 39.130 0.00 0.00 46.05 4.57
4406 5822 8.483743 AAATTATTTTTGAGTGTCGTGTTACG 57.516 30.769 0.00 0.00 44.19 3.18
4409 5825 9.790389 TGTAAAATTATTTTTGAGTGTCGTGTT 57.210 25.926 8.28 0.00 35.82 3.32
4410 5826 9.228636 GTGTAAAATTATTTTTGAGTGTCGTGT 57.771 29.630 8.28 0.00 35.82 4.49
4411 5827 9.445786 AGTGTAAAATTATTTTTGAGTGTCGTG 57.554 29.630 8.28 0.00 35.82 4.35
4412 5828 9.445786 CAGTGTAAAATTATTTTTGAGTGTCGT 57.554 29.630 8.28 0.00 35.82 4.34
4413 5829 8.901748 CCAGTGTAAAATTATTTTTGAGTGTCG 58.098 33.333 8.28 0.00 35.82 4.35
4414 5830 9.959749 TCCAGTGTAAAATTATTTTTGAGTGTC 57.040 29.630 8.28 0.00 35.82 3.67
4415 5831 9.744468 GTCCAGTGTAAAATTATTTTTGAGTGT 57.256 29.630 8.28 0.00 35.82 3.55
4416 5832 9.743057 TGTCCAGTGTAAAATTATTTTTGAGTG 57.257 29.630 8.28 8.24 35.82 3.51
4424 5840 9.243105 ACTGCTAATGTCCAGTGTAAAATTATT 57.757 29.630 0.00 0.00 40.55 1.40
4425 5841 8.807948 ACTGCTAATGTCCAGTGTAAAATTAT 57.192 30.769 0.00 0.00 40.55 1.28
4426 5842 8.630054 AACTGCTAATGTCCAGTGTAAAATTA 57.370 30.769 0.00 0.00 41.16 1.40
4427 5843 7.448469 AGAACTGCTAATGTCCAGTGTAAAATT 59.552 33.333 0.00 0.00 41.16 1.82
4428 5844 6.942576 AGAACTGCTAATGTCCAGTGTAAAAT 59.057 34.615 0.00 0.00 41.16 1.82
4429 5845 6.296026 AGAACTGCTAATGTCCAGTGTAAAA 58.704 36.000 0.00 0.00 41.16 1.52
4430 5846 5.865085 AGAACTGCTAATGTCCAGTGTAAA 58.135 37.500 0.00 0.00 41.16 2.01
4431 5847 5.483685 AGAACTGCTAATGTCCAGTGTAA 57.516 39.130 0.00 0.00 41.16 2.41
4432 5848 6.599356 TTAGAACTGCTAATGTCCAGTGTA 57.401 37.500 0.00 0.00 41.16 2.90
4433 5849 5.483685 TTAGAACTGCTAATGTCCAGTGT 57.516 39.130 0.00 0.00 41.16 3.55
4434 5850 5.934625 ACTTTAGAACTGCTAATGTCCAGTG 59.065 40.000 0.00 0.00 41.15 3.66
4435 5851 5.934625 CACTTTAGAACTGCTAATGTCCAGT 59.065 40.000 0.00 0.00 42.35 4.00
4436 5852 6.166279 TCACTTTAGAACTGCTAATGTCCAG 58.834 40.000 0.00 0.00 42.35 3.86
4437 5853 6.109156 TCACTTTAGAACTGCTAATGTCCA 57.891 37.500 0.00 0.00 42.35 4.02
4438 5854 7.550906 AGATTCACTTTAGAACTGCTAATGTCC 59.449 37.037 0.00 0.00 42.35 4.02
4439 5855 8.485976 AGATTCACTTTAGAACTGCTAATGTC 57.514 34.615 0.00 0.00 42.35 3.06
4440 5856 7.276658 CGAGATTCACTTTAGAACTGCTAATGT 59.723 37.037 0.00 0.00 43.99 2.71
4441 5857 7.616673 CGAGATTCACTTTAGAACTGCTAATG 58.383 38.462 0.00 0.00 38.79 1.90
4442 5858 6.256757 GCGAGATTCACTTTAGAACTGCTAAT 59.743 38.462 0.00 0.00 38.79 1.73
4443 5859 5.577164 GCGAGATTCACTTTAGAACTGCTAA 59.423 40.000 0.00 0.00 37.30 3.09
4444 5860 5.103000 GCGAGATTCACTTTAGAACTGCTA 58.897 41.667 0.00 0.00 0.00 3.49
4445 5861 3.929610 GCGAGATTCACTTTAGAACTGCT 59.070 43.478 0.00 0.00 0.00 4.24
4446 5862 3.929610 AGCGAGATTCACTTTAGAACTGC 59.070 43.478 0.00 0.00 0.00 4.40
4447 5863 5.164233 TCAGCGAGATTCACTTTAGAACTG 58.836 41.667 0.00 0.00 0.00 3.16
4448 5864 5.392767 TCAGCGAGATTCACTTTAGAACT 57.607 39.130 0.00 0.00 0.00 3.01
4449 5865 7.757097 TTATCAGCGAGATTCACTTTAGAAC 57.243 36.000 0.03 0.00 38.19 3.01
4450 5866 8.820933 CAATTATCAGCGAGATTCACTTTAGAA 58.179 33.333 0.03 0.00 38.19 2.10
4451 5867 7.042456 GCAATTATCAGCGAGATTCACTTTAGA 60.042 37.037 0.03 0.00 38.19 2.10
4452 5868 7.042187 AGCAATTATCAGCGAGATTCACTTTAG 60.042 37.037 0.03 0.00 38.19 1.85
4453 5869 6.763135 AGCAATTATCAGCGAGATTCACTTTA 59.237 34.615 0.03 0.00 38.19 1.85
4454 5870 5.587844 AGCAATTATCAGCGAGATTCACTTT 59.412 36.000 0.03 0.00 38.19 2.66
4455 5871 5.121811 AGCAATTATCAGCGAGATTCACTT 58.878 37.500 0.03 0.00 38.19 3.16
4456 5872 4.701765 AGCAATTATCAGCGAGATTCACT 58.298 39.130 0.03 0.00 38.19 3.41
4457 5873 4.084118 GGAGCAATTATCAGCGAGATTCAC 60.084 45.833 0.03 0.00 38.19 3.18
4458 5874 4.060900 GGAGCAATTATCAGCGAGATTCA 58.939 43.478 0.03 0.00 38.19 2.57
4459 5875 4.060900 TGGAGCAATTATCAGCGAGATTC 58.939 43.478 0.03 0.00 38.19 2.52
4460 5876 4.077300 TGGAGCAATTATCAGCGAGATT 57.923 40.909 0.03 0.00 38.19 2.40
4461 5877 3.758755 TGGAGCAATTATCAGCGAGAT 57.241 42.857 0.00 0.49 40.86 2.75
4462 5878 3.758755 ATGGAGCAATTATCAGCGAGA 57.241 42.857 0.00 0.00 35.48 4.04
4463 5879 5.417811 AGATATGGAGCAATTATCAGCGAG 58.582 41.667 0.00 0.00 35.48 5.03
4464 5880 5.411831 AGATATGGAGCAATTATCAGCGA 57.588 39.130 0.00 0.00 35.48 4.93
4465 5881 5.064452 GGAAGATATGGAGCAATTATCAGCG 59.936 44.000 0.00 0.00 35.48 5.18
4466 5882 6.179040 AGGAAGATATGGAGCAATTATCAGC 58.821 40.000 0.00 0.00 0.00 4.26
4467 5883 7.622713 AGAGGAAGATATGGAGCAATTATCAG 58.377 38.462 0.00 0.00 0.00 2.90
4468 5884 7.565190 AGAGGAAGATATGGAGCAATTATCA 57.435 36.000 0.00 0.00 0.00 2.15
4469 5885 7.710475 GCTAGAGGAAGATATGGAGCAATTATC 59.290 40.741 0.00 0.00 0.00 1.75
4470 5886 7.181665 TGCTAGAGGAAGATATGGAGCAATTAT 59.818 37.037 0.00 0.00 35.85 1.28
4471 5887 6.498303 TGCTAGAGGAAGATATGGAGCAATTA 59.502 38.462 0.00 0.00 35.85 1.40
4472 5888 5.309020 TGCTAGAGGAAGATATGGAGCAATT 59.691 40.000 0.00 0.00 35.85 2.32
4473 5889 4.842948 TGCTAGAGGAAGATATGGAGCAAT 59.157 41.667 0.00 0.00 35.85 3.56
4474 5890 4.226384 TGCTAGAGGAAGATATGGAGCAA 58.774 43.478 0.00 0.00 35.85 3.91
4475 5891 3.849527 TGCTAGAGGAAGATATGGAGCA 58.150 45.455 0.00 0.00 36.39 4.26
4476 5892 5.177326 CAATGCTAGAGGAAGATATGGAGC 58.823 45.833 0.00 0.00 0.00 4.70
4477 5893 6.164876 CACAATGCTAGAGGAAGATATGGAG 58.835 44.000 0.00 0.00 0.00 3.86
4478 5894 5.012458 CCACAATGCTAGAGGAAGATATGGA 59.988 44.000 0.00 0.00 0.00 3.41
4479 5895 5.243981 CCACAATGCTAGAGGAAGATATGG 58.756 45.833 0.00 0.00 0.00 2.74
4480 5896 4.694509 GCCACAATGCTAGAGGAAGATATG 59.305 45.833 0.00 0.00 0.00 1.78
4481 5897 4.263243 GGCCACAATGCTAGAGGAAGATAT 60.263 45.833 0.00 0.00 0.00 1.63
4482 5898 3.071602 GGCCACAATGCTAGAGGAAGATA 59.928 47.826 0.00 0.00 0.00 1.98
4483 5899 2.158696 GGCCACAATGCTAGAGGAAGAT 60.159 50.000 0.00 0.00 0.00 2.40
4484 5900 1.210478 GGCCACAATGCTAGAGGAAGA 59.790 52.381 0.00 0.00 0.00 2.87
4485 5901 1.065199 TGGCCACAATGCTAGAGGAAG 60.065 52.381 0.00 0.00 0.00 3.46
4486 5902 0.991146 TGGCCACAATGCTAGAGGAA 59.009 50.000 0.00 0.00 0.00 3.36
4487 5903 0.991146 TTGGCCACAATGCTAGAGGA 59.009 50.000 3.88 0.00 0.00 3.71
4488 5904 2.062971 ATTGGCCACAATGCTAGAGG 57.937 50.000 3.88 0.00 45.27 3.69
4503 5919 0.599558 CAGGTTGTGGCAGACATTGG 59.400 55.000 0.00 0.00 33.40 3.16
4504 5920 1.321474 ACAGGTTGTGGCAGACATTG 58.679 50.000 0.00 0.00 33.40 2.82
4505 5921 2.071778 AACAGGTTGTGGCAGACATT 57.928 45.000 0.00 0.00 33.40 2.71
4506 5922 1.682854 CAAACAGGTTGTGGCAGACAT 59.317 47.619 0.00 0.00 33.40 3.06
4507 5923 1.102154 CAAACAGGTTGTGGCAGACA 58.898 50.000 0.00 0.00 32.08 3.41
4508 5924 0.249031 GCAAACAGGTTGTGGCAGAC 60.249 55.000 0.00 0.00 39.63 3.51
4509 5925 0.682532 TGCAAACAGGTTGTGGCAGA 60.683 50.000 0.00 0.00 36.83 4.26
4510 5926 0.249155 CTGCAAACAGGTTGTGGCAG 60.249 55.000 16.47 16.47 45.99 4.85
4511 5927 1.815196 CTGCAAACAGGTTGTGGCA 59.185 52.632 0.00 8.06 40.48 4.92
4512 5928 4.736165 CTGCAAACAGGTTGTGGC 57.264 55.556 0.00 0.00 40.48 5.01
4521 5937 3.686241 GTCATAGCATCAGACTGCAAACA 59.314 43.478 0.00 0.00 44.77 2.83
4522 5938 3.242220 CGTCATAGCATCAGACTGCAAAC 60.242 47.826 0.00 0.00 44.77 2.93
4523 5939 2.931969 CGTCATAGCATCAGACTGCAAA 59.068 45.455 0.00 0.00 44.77 3.68
4524 5940 2.543641 CGTCATAGCATCAGACTGCAA 58.456 47.619 0.00 0.00 44.77 4.08
4525 5941 1.202452 CCGTCATAGCATCAGACTGCA 60.202 52.381 0.00 0.00 44.77 4.41
4526 5942 1.067669 TCCGTCATAGCATCAGACTGC 59.932 52.381 0.00 0.00 42.62 4.40
4527 5943 2.360483 ACTCCGTCATAGCATCAGACTG 59.640 50.000 0.00 0.00 0.00 3.51
4528 5944 2.660572 ACTCCGTCATAGCATCAGACT 58.339 47.619 0.00 0.00 0.00 3.24
4529 5945 3.119291 CAACTCCGTCATAGCATCAGAC 58.881 50.000 0.00 0.00 0.00 3.51
4530 5946 2.760650 ACAACTCCGTCATAGCATCAGA 59.239 45.455 0.00 0.00 0.00 3.27
4531 5947 2.862536 CACAACTCCGTCATAGCATCAG 59.137 50.000 0.00 0.00 0.00 2.90
4532 5948 2.418609 CCACAACTCCGTCATAGCATCA 60.419 50.000 0.00 0.00 0.00 3.07
4533 5949 2.159099 TCCACAACTCCGTCATAGCATC 60.159 50.000 0.00 0.00 0.00 3.91
4534 5950 1.831106 TCCACAACTCCGTCATAGCAT 59.169 47.619 0.00 0.00 0.00 3.79
4535 5951 1.262417 TCCACAACTCCGTCATAGCA 58.738 50.000 0.00 0.00 0.00 3.49
4536 5952 2.604046 ATCCACAACTCCGTCATAGC 57.396 50.000 0.00 0.00 0.00 2.97
4537 5953 5.842907 TGAATATCCACAACTCCGTCATAG 58.157 41.667 0.00 0.00 0.00 2.23
4538 5954 5.862678 TGAATATCCACAACTCCGTCATA 57.137 39.130 0.00 0.00 0.00 2.15
4539 5955 4.753516 TGAATATCCACAACTCCGTCAT 57.246 40.909 0.00 0.00 0.00 3.06
4540 5956 4.081142 ACATGAATATCCACAACTCCGTCA 60.081 41.667 0.00 0.00 0.00 4.35
4541 5957 4.442706 ACATGAATATCCACAACTCCGTC 58.557 43.478 0.00 0.00 0.00 4.79
4542 5958 4.162320 AGACATGAATATCCACAACTCCGT 59.838 41.667 0.00 0.00 0.00 4.69
4543 5959 4.697514 AGACATGAATATCCACAACTCCG 58.302 43.478 0.00 0.00 0.00 4.63
4544 5960 5.529060 GGAAGACATGAATATCCACAACTCC 59.471 44.000 0.00 0.00 0.00 3.85
4545 5961 5.235186 CGGAAGACATGAATATCCACAACTC 59.765 44.000 0.00 0.00 0.00 3.01
4546 5962 5.118990 CGGAAGACATGAATATCCACAACT 58.881 41.667 0.00 0.00 0.00 3.16
4547 5963 4.260784 GCGGAAGACATGAATATCCACAAC 60.261 45.833 0.00 0.00 0.00 3.32
4548 5964 3.876914 GCGGAAGACATGAATATCCACAA 59.123 43.478 0.00 0.00 0.00 3.33
4549 5965 3.466836 GCGGAAGACATGAATATCCACA 58.533 45.455 0.00 0.00 0.00 4.17
4550 5966 2.808543 GGCGGAAGACATGAATATCCAC 59.191 50.000 0.00 0.00 40.66 4.02
4551 5967 3.126001 GGCGGAAGACATGAATATCCA 57.874 47.619 0.00 0.00 40.66 3.41
4562 5978 1.282875 GTTGTGCTTGGCGGAAGAC 59.717 57.895 0.00 0.00 42.12 3.01
4563 5979 2.250939 CGTTGTGCTTGGCGGAAGA 61.251 57.895 0.00 0.00 32.82 2.87
4564 5980 2.252260 CGTTGTGCTTGGCGGAAG 59.748 61.111 0.00 0.00 34.41 3.46
4565 5981 3.959975 GCGTTGTGCTTGGCGGAA 61.960 61.111 0.00 0.00 41.73 4.30
4568 5984 4.389576 GAGGCGTTGTGCTTGGCG 62.390 66.667 0.00 0.00 45.43 5.69
4569 5985 3.286751 TGAGGCGTTGTGCTTGGC 61.287 61.111 0.00 0.00 45.43 4.52
4570 5986 2.121564 CTGTGAGGCGTTGTGCTTGG 62.122 60.000 0.00 0.00 45.43 3.61
4571 5987 1.280746 CTGTGAGGCGTTGTGCTTG 59.719 57.895 0.00 0.00 45.43 4.01
4572 5988 2.546494 GCTGTGAGGCGTTGTGCTT 61.546 57.895 0.00 0.00 45.43 3.91
4573 5989 2.974698 GCTGTGAGGCGTTGTGCT 60.975 61.111 0.00 0.00 45.43 4.40
4574 5990 2.620112 ATGCTGTGAGGCGTTGTGC 61.620 57.895 0.00 0.00 45.38 4.57
4575 5991 1.208358 CATGCTGTGAGGCGTTGTG 59.792 57.895 0.00 0.00 34.52 3.33
4576 5992 2.620112 GCATGCTGTGAGGCGTTGT 61.620 57.895 11.37 0.00 34.52 3.32
4577 5993 1.020861 TAGCATGCTGTGAGGCGTTG 61.021 55.000 30.42 0.00 34.52 4.10
4578 5994 0.107508 ATAGCATGCTGTGAGGCGTT 60.108 50.000 30.42 1.88 34.52 4.84
4579 5995 0.531532 GATAGCATGCTGTGAGGCGT 60.532 55.000 30.42 2.70 34.52 5.68
4580 5996 1.554891 CGATAGCATGCTGTGAGGCG 61.555 60.000 30.42 18.36 34.52 5.52
4581 5997 2.232750 CGATAGCATGCTGTGAGGC 58.767 57.895 30.42 10.46 0.00 4.70
4594 6010 1.590238 CTGCGTCTTTGGAAGCGATAG 59.410 52.381 0.00 3.52 47.00 2.08
4595 6011 1.640428 CTGCGTCTTTGGAAGCGATA 58.360 50.000 0.00 0.00 47.00 2.92
4596 6012 1.021390 CCTGCGTCTTTGGAAGCGAT 61.021 55.000 0.00 0.00 47.00 4.58
4597 6013 1.667830 CCTGCGTCTTTGGAAGCGA 60.668 57.895 0.00 0.00 47.00 4.93
4598 6014 2.680913 CCCTGCGTCTTTGGAAGCG 61.681 63.158 0.00 0.00 47.00 4.68
4599 6015 1.578206 GACCCTGCGTCTTTGGAAGC 61.578 60.000 0.00 0.00 44.91 3.86
4600 6016 0.250295 TGACCCTGCGTCTTTGGAAG 60.250 55.000 0.00 0.00 42.49 3.46
4601 6017 0.250295 CTGACCCTGCGTCTTTGGAA 60.250 55.000 0.00 0.00 42.49 3.53
4602 6018 1.371183 CTGACCCTGCGTCTTTGGA 59.629 57.895 0.00 0.00 42.49 3.53
4603 6019 1.071471 ACTGACCCTGCGTCTTTGG 59.929 57.895 0.00 0.00 42.49 3.28
4604 6020 0.249868 TCACTGACCCTGCGTCTTTG 60.250 55.000 0.00 0.00 42.49 2.77
4605 6021 0.249911 GTCACTGACCCTGCGTCTTT 60.250 55.000 0.00 0.00 42.49 2.52
4606 6022 1.367840 GTCACTGACCCTGCGTCTT 59.632 57.895 0.00 0.00 42.49 3.01
4607 6023 1.832608 TGTCACTGACCCTGCGTCT 60.833 57.895 6.72 0.00 42.49 4.18
4608 6024 1.664965 GTGTCACTGACCCTGCGTC 60.665 63.158 6.72 0.00 42.33 5.19
4609 6025 2.421739 GTGTCACTGACCCTGCGT 59.578 61.111 6.72 0.00 0.00 5.24
4610 6026 2.357517 GGTGTCACTGACCCTGCG 60.358 66.667 6.72 0.00 0.00 5.18
4615 6031 0.472471 TTTGGAGGGTGTCACTGACC 59.528 55.000 6.72 4.69 0.00 4.02
4616 6032 1.947456 GTTTTGGAGGGTGTCACTGAC 59.053 52.381 2.35 1.86 0.00 3.51
4617 6033 1.133915 GGTTTTGGAGGGTGTCACTGA 60.134 52.381 2.35 0.00 0.00 3.41
4618 6034 1.318576 GGTTTTGGAGGGTGTCACTG 58.681 55.000 2.35 0.00 0.00 3.66
4619 6035 0.923358 TGGTTTTGGAGGGTGTCACT 59.077 50.000 2.35 0.00 0.00 3.41
4620 6036 1.407618 GTTGGTTTTGGAGGGTGTCAC 59.592 52.381 0.00 0.00 0.00 3.67
4621 6037 1.770294 GTTGGTTTTGGAGGGTGTCA 58.230 50.000 0.00 0.00 0.00 3.58
4622 6038 0.666374 CGTTGGTTTTGGAGGGTGTC 59.334 55.000 0.00 0.00 0.00 3.67
4623 6039 1.388837 GCGTTGGTTTTGGAGGGTGT 61.389 55.000 0.00 0.00 0.00 4.16
4624 6040 1.362355 GCGTTGGTTTTGGAGGGTG 59.638 57.895 0.00 0.00 0.00 4.61
4625 6041 1.830847 GGCGTTGGTTTTGGAGGGT 60.831 57.895 0.00 0.00 0.00 4.34
4626 6042 2.914908 CGGCGTTGGTTTTGGAGGG 61.915 63.158 0.00 0.00 0.00 4.30
4627 6043 1.852067 CTCGGCGTTGGTTTTGGAGG 61.852 60.000 6.85 0.00 0.00 4.30
4628 6044 1.574428 CTCGGCGTTGGTTTTGGAG 59.426 57.895 6.85 0.00 0.00 3.86
4629 6045 1.894756 CCTCGGCGTTGGTTTTGGA 60.895 57.895 6.85 0.00 0.00 3.53
4630 6046 2.642700 CCTCGGCGTTGGTTTTGG 59.357 61.111 6.85 0.00 0.00 3.28
4631 6047 2.050442 GCCTCGGCGTTGGTTTTG 60.050 61.111 18.91 0.00 0.00 2.44
4632 6048 3.292159 GGCCTCGGCGTTGGTTTT 61.292 61.111 18.91 0.00 43.06 2.43
4637 6053 2.958578 ATATTGGGGCCTCGGCGTTG 62.959 60.000 6.85 0.00 43.06 4.10
4638 6054 1.412453 TATATTGGGGCCTCGGCGTT 61.412 55.000 6.85 0.00 43.06 4.84
4639 6055 1.198759 ATATATTGGGGCCTCGGCGT 61.199 55.000 6.85 0.00 43.06 5.68
4640 6056 0.828022 TATATATTGGGGCCTCGGCG 59.172 55.000 0.84 0.00 43.06 6.46
4641 6057 4.041691 ACATATATATATTGGGGCCTCGGC 59.958 45.833 0.84 0.00 41.06 5.54
4642 6058 5.513094 CCACATATATATATTGGGGCCTCGG 60.513 48.000 17.62 0.00 0.00 4.63
4643 6059 5.071788 ACCACATATATATATTGGGGCCTCG 59.928 44.000 23.51 8.23 31.26 4.63
4644 6060 6.515512 ACCACATATATATATTGGGGCCTC 57.484 41.667 23.51 0.00 31.26 4.70
4645 6061 8.025089 AGATACCACATATATATATTGGGGCCT 58.975 37.037 23.51 17.51 31.26 5.19
4646 6062 8.103305 CAGATACCACATATATATATTGGGGCC 58.897 40.741 23.51 0.00 31.26 5.80
4647 6063 8.880244 TCAGATACCACATATATATATTGGGGC 58.120 37.037 23.51 16.79 31.26 5.80
4662 6078 9.778741 GGTCAAAAGATAATATCAGATACCACA 57.221 33.333 2.84 0.00 0.00 4.17
4720 6197 1.780636 CGTACGCGTTTGTGCACATAC 60.781 52.381 25.15 25.15 34.15 2.39
4721 6198 0.435388 CGTACGCGTTTGTGCACATA 59.565 50.000 22.39 13.86 34.15 2.29
4723 6200 1.813212 CTCGTACGCGTTTGTGCACA 61.813 55.000 20.78 17.42 39.49 4.57
4724 6201 1.154908 CTCGTACGCGTTTGTGCAC 60.155 57.895 20.78 10.75 39.49 4.57
4725 6202 1.272784 CTCTCGTACGCGTTTGTGCA 61.273 55.000 20.78 0.00 39.49 4.57
4726 6203 1.411089 CTCTCGTACGCGTTTGTGC 59.589 57.895 20.78 2.05 39.49 4.57
4727 6204 1.002250 AGCTCTCGTACGCGTTTGTG 61.002 55.000 20.78 11.58 39.49 3.33
4728 6205 0.518636 TAGCTCTCGTACGCGTTTGT 59.481 50.000 20.78 0.00 39.49 2.83
4729 6206 1.609932 TTAGCTCTCGTACGCGTTTG 58.390 50.000 20.78 11.01 39.49 2.93
4730 6207 2.182825 CATTAGCTCTCGTACGCGTTT 58.817 47.619 20.78 0.00 39.49 3.60
4731 6208 1.131883 ACATTAGCTCTCGTACGCGTT 59.868 47.619 20.78 0.80 39.49 4.84
4732 6209 0.731417 ACATTAGCTCTCGTACGCGT 59.269 50.000 19.17 19.17 39.49 6.01
4733 6210 2.033065 AGTACATTAGCTCTCGTACGCG 60.033 50.000 11.24 3.53 39.33 6.01
4734 6211 3.605743 AGTACATTAGCTCTCGTACGC 57.394 47.619 11.24 0.00 39.33 4.42
4744 6221 6.036517 CACATGAACAGAGGAAGTACATTAGC 59.963 42.308 0.00 0.00 0.00 3.09
4759 6236 3.251729 GCATGCCCTATACACATGAACAG 59.748 47.826 6.36 0.00 43.04 3.16
4764 6241 7.812690 ATTATATGCATGCCCTATACACATG 57.187 36.000 16.68 0.00 43.21 3.21
4765 6242 8.277197 AGAATTATATGCATGCCCTATACACAT 58.723 33.333 16.68 0.56 0.00 3.21
4766 6243 7.632861 AGAATTATATGCATGCCCTATACACA 58.367 34.615 16.68 2.99 0.00 3.72
4795 6272 9.935682 CGCATATTTAGTTAGTCAAATTGATGT 57.064 29.630 0.00 0.00 0.00 3.06
4814 6291 8.098220 TGCTTTTGATGACATATACGCATATT 57.902 30.769 0.00 0.00 0.00 1.28
4818 6295 7.387397 TGATATGCTTTTGATGACATATACGCA 59.613 33.333 0.00 0.00 36.19 5.24
4831 6308 6.698008 ACGAATCCAATGATATGCTTTTGA 57.302 33.333 0.00 0.00 0.00 2.69
4838 6315 6.369615 TGTCTGCATACGAATCCAATGATATG 59.630 38.462 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.