Multiple sequence alignment - TraesCS1B01G414600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G414600 chr1B 100.000 2216 0 0 1 2216 639447347 639449562 0.000000e+00 4093.0
1 TraesCS1B01G414600 chr1B 87.910 1158 87 29 362 1508 8180899 8182014 0.000000e+00 1314.0
2 TraesCS1B01G414600 chr1B 82.400 1000 118 29 1 970 41002079 41003050 0.000000e+00 819.0
3 TraesCS1B01G414600 chr1B 86.778 658 64 14 362 1011 644621667 644621025 0.000000e+00 712.0
4 TraesCS1B01G414600 chr1B 85.960 349 23 15 1096 1442 17836634 17836310 1.260000e-92 350.0
5 TraesCS1B01G414600 chr1B 89.326 178 11 7 1555 1729 17836246 17836074 1.330000e-52 217.0
6 TraesCS1B01G414600 chr1B 84.753 223 15 11 1516 1725 8181996 8182212 2.880000e-49 206.0
7 TraesCS1B01G414600 chr1B 85.714 77 8 2 1 77 17872210 17872137 6.560000e-11 78.7
8 TraesCS1B01G414600 chr1D 85.204 1399 129 40 72 1442 5451789 5453137 0.000000e+00 1365.0
9 TraesCS1B01G414600 chr1A 87.891 1024 87 15 308 1313 6767247 6766243 0.000000e+00 1170.0
10 TraesCS1B01G414600 chr1A 90.135 517 37 11 869 1384 6765576 6765073 0.000000e+00 660.0
11 TraesCS1B01G414600 chr1A 86.047 215 21 7 1516 1725 6765002 6764792 2.860000e-54 222.0
12 TraesCS1B01G414600 chr1A 91.071 112 10 0 101 212 6767393 6767282 3.810000e-33 152.0
13 TraesCS1B01G414600 chr1A 91.000 100 9 0 1516 1615 6765680 6765581 3.840000e-28 135.0
14 TraesCS1B01G414600 chr1A 83.688 141 5 10 1304 1442 6765830 6765706 1.390000e-22 117.0
15 TraesCS1B01G414600 chr1A 81.513 119 13 5 1797 1906 6764768 6764650 3.030000e-14 89.8
16 TraesCS1B01G414600 chrUn 85.510 980 90 24 21 970 187023534 187024491 0.000000e+00 976.0
17 TraesCS1B01G414600 chr7D 85.510 980 91 23 21 970 614264363 614265321 0.000000e+00 976.0
18 TraesCS1B01G414600 chr7D 86.503 163 22 0 997 1159 433013781 433013943 1.750000e-41 180.0
19 TraesCS1B01G414600 chr5D 85.510 980 90 24 21 970 523436861 523437818 0.000000e+00 976.0
20 TraesCS1B01G414600 chr4D 85.306 980 93 23 21 970 408289111 408290069 0.000000e+00 965.0
21 TraesCS1B01G414600 chr7A 86.667 540 30 17 882 1416 692313324 692312822 5.340000e-156 560.0
22 TraesCS1B01G414600 chr7A 85.417 192 16 7 1519 1701 692312534 692312346 2.900000e-44 189.0
23 TraesCS1B01G414600 chr7A 82.828 198 29 4 968 1164 483962218 483962411 2.930000e-39 172.0
24 TraesCS1B01G414600 chr7A 82.323 198 30 4 968 1164 499572379 499572186 1.360000e-37 167.0
25 TraesCS1B01G414600 chr7A 87.379 103 8 3 1966 2064 49186232 49186131 1.800000e-21 113.0
26 TraesCS1B01G414600 chr7B 83.333 216 33 2 1000 1215 449553271 449553059 1.740000e-46 196.0
27 TraesCS1B01G414600 chr7B 84.404 109 13 3 1955 2059 41636167 41636275 1.080000e-18 104.0
28 TraesCS1B01G414600 chr2D 88.991 109 11 1 1952 2059 59141116 59141224 1.380000e-27 134.0
29 TraesCS1B01G414600 chr6B 87.736 106 10 1 1957 2059 23523151 23523046 1.070000e-23 121.0
30 TraesCS1B01G414600 chr6A 86.916 107 10 2 1957 2059 602949066 602948960 1.390000e-22 117.0
31 TraesCS1B01G414600 chr5B 86.239 109 11 3 1955 2059 636985935 636985827 5.000000e-22 115.0
32 TraesCS1B01G414600 chr5B 85.047 107 12 3 1957 2059 447280152 447280258 3.010000e-19 106.0
33 TraesCS1B01G414600 chr5B 84.404 109 13 2 1955 2059 595615800 595615692 1.080000e-18 104.0
34 TraesCS1B01G414600 chr6D 85.849 106 12 3 1957 2059 13198995 13199100 2.330000e-20 110.0
35 TraesCS1B01G414600 chr2B 88.158 76 3 4 2069 2140 793426460 793426533 3.920000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G414600 chr1B 639447347 639449562 2215 False 4093.000000 4093 100.0000 1 2216 1 chr1B.!!$F2 2215
1 TraesCS1B01G414600 chr1B 41002079 41003050 971 False 819.000000 819 82.4000 1 970 1 chr1B.!!$F1 969
2 TraesCS1B01G414600 chr1B 8180899 8182212 1313 False 760.000000 1314 86.3315 362 1725 2 chr1B.!!$F3 1363
3 TraesCS1B01G414600 chr1B 644621025 644621667 642 True 712.000000 712 86.7780 362 1011 1 chr1B.!!$R2 649
4 TraesCS1B01G414600 chr1B 17836074 17836634 560 True 283.500000 350 87.6430 1096 1729 2 chr1B.!!$R3 633
5 TraesCS1B01G414600 chr1D 5451789 5453137 1348 False 1365.000000 1365 85.2040 72 1442 1 chr1D.!!$F1 1370
6 TraesCS1B01G414600 chr1A 6764650 6767393 2743 True 363.685714 1170 87.3350 101 1906 7 chr1A.!!$R1 1805
7 TraesCS1B01G414600 chrUn 187023534 187024491 957 False 976.000000 976 85.5100 21 970 1 chrUn.!!$F1 949
8 TraesCS1B01G414600 chr7D 614264363 614265321 958 False 976.000000 976 85.5100 21 970 1 chr7D.!!$F2 949
9 TraesCS1B01G414600 chr5D 523436861 523437818 957 False 976.000000 976 85.5100 21 970 1 chr5D.!!$F1 949
10 TraesCS1B01G414600 chr4D 408289111 408290069 958 False 965.000000 965 85.3060 21 970 1 chr4D.!!$F1 949
11 TraesCS1B01G414600 chr7A 692312346 692313324 978 True 374.500000 560 86.0420 882 1701 2 chr7A.!!$R3 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.246086 ACAGAGCACAGACTAGCAGC 59.754 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 3264 0.034186 TCCCAACACATGATCAGCCC 60.034 55.0 0.0 0.0 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.246086 ACAGAGCACAGACTAGCAGC 59.754 55.000 0.00 0.00 0.00 5.25
53 54 9.915629 GGAAGAACTCCATGTAGTACTATTATG 57.084 37.037 17.01 17.01 44.67 1.90
56 57 9.080097 AGAACTCCATGTAGTACTATTATGACC 57.920 37.037 22.07 5.06 0.00 4.02
57 58 8.777578 AACTCCATGTAGTACTATTATGACCA 57.222 34.615 22.07 9.57 0.00 4.02
80 81 6.374053 CCATATGTACACACCAAATCTTGTGA 59.626 38.462 8.64 0.00 45.03 3.58
81 82 7.094420 CCATATGTACACACCAAATCTTGTGAA 60.094 37.037 8.64 0.00 45.03 3.18
93 94 5.972107 AATCTTGTGAAAACCTCTGGATG 57.028 39.130 0.00 0.00 0.00 3.51
94 95 3.754965 TCTTGTGAAAACCTCTGGATGG 58.245 45.455 0.00 0.00 0.00 3.51
95 96 3.138283 TCTTGTGAAAACCTCTGGATGGT 59.862 43.478 0.00 0.00 39.91 3.55
96 97 4.349636 TCTTGTGAAAACCTCTGGATGGTA 59.650 41.667 0.00 0.00 36.69 3.25
97 98 4.015872 TGTGAAAACCTCTGGATGGTAC 57.984 45.455 0.00 0.00 36.69 3.34
98 99 3.650942 TGTGAAAACCTCTGGATGGTACT 59.349 43.478 0.00 0.00 36.69 2.73
123 130 6.442112 AGTACAACTTAGTTTCAGTACGTCC 58.558 40.000 14.34 0.00 37.49 4.79
169 176 5.234972 GCACTGCCAAGATAAATAAATTGCC 59.765 40.000 0.00 0.00 0.00 4.52
172 179 7.223387 CACTGCCAAGATAAATAAATTGCCTTC 59.777 37.037 0.00 0.00 0.00 3.46
179 186 8.000780 AGATAAATAAATTGCCTTCTGTGTCC 57.999 34.615 0.00 0.00 0.00 4.02
237 249 6.826893 TTTTCTTTTTCAAGCTACATGTGC 57.173 33.333 9.11 10.27 0.00 4.57
280 292 2.031616 TGCACTCAGCTCAGGCAC 59.968 61.111 0.00 0.00 45.94 5.01
313 336 1.735559 GGGTCTACACCGTTGCGTC 60.736 63.158 0.00 0.00 44.91 5.19
325 349 2.096417 CCGTTGCGTCTGTTTCCTAAAG 60.096 50.000 0.00 0.00 0.00 1.85
520 566 1.817099 GCTCAGGCCCGATGTTCTG 60.817 63.158 0.00 0.00 0.00 3.02
555 601 3.445096 GTGCTTTGTATGGCTGAAGGATT 59.555 43.478 0.00 0.00 0.00 3.01
562 608 0.254178 TGGCTGAAGGATTCCTCAGC 59.746 55.000 29.78 29.78 46.93 4.26
582 628 0.669318 AGGCCGTGTTGTGATGTACG 60.669 55.000 0.00 0.00 36.39 3.67
583 629 0.668096 GGCCGTGTTGTGATGTACGA 60.668 55.000 0.00 0.00 38.72 3.43
601 649 6.224584 TGTACGAACAGTATTTGGTTGATGA 58.775 36.000 0.00 0.00 37.69 2.92
692 741 6.042552 AGCTACTGAATGCCAGACTGTATAAT 59.957 38.462 0.93 0.00 45.78 1.28
715 766 1.912043 CCAGAGGGGAGTCAGATTGTT 59.088 52.381 0.00 0.00 40.01 2.83
761 813 1.279025 ACTGTCCCCGTAATGCCCAT 61.279 55.000 0.00 0.00 0.00 4.00
807 859 2.819984 AAGCGGTGCCCACATGTAGG 62.820 60.000 5.87 5.87 0.00 3.18
808 860 2.986290 CGGTGCCCACATGTAGGA 59.014 61.111 15.10 0.00 0.00 2.94
809 861 1.153369 CGGTGCCCACATGTAGGAG 60.153 63.158 15.10 6.49 0.00 3.69
817 870 4.471747 TGCCCACATGTAGGAGTAACATAA 59.528 41.667 15.10 0.00 35.82 1.90
831 884 6.315393 GGAGTAACATAATTTCACATCCGTGT 59.685 38.462 0.00 0.00 44.02 4.49
838 891 0.756294 TTCACATCCGTGTCCTGTGT 59.244 50.000 0.00 0.00 44.02 3.72
870 923 1.003355 CGGCATGGAACCAGTCACT 60.003 57.895 0.00 0.00 0.00 3.41
902 956 6.122277 TCAAGTTGTCAGAGGAACATCTTTT 58.878 36.000 2.11 0.00 0.00 2.27
921 975 4.695217 TTTATGTTTCGCACCTTGGATC 57.305 40.909 0.00 0.00 0.00 3.36
929 983 1.674817 CGCACCTTGGATCGGTAACTT 60.675 52.381 0.00 0.00 32.37 2.66
932 986 3.670625 CACCTTGGATCGGTAACTTCAA 58.329 45.455 0.00 0.00 32.37 2.69
997 2166 1.654743 GCCTAGTCGTCATCGTCGC 60.655 63.158 0.00 0.00 38.33 5.19
1131 2300 2.653702 GACGAGCTGCAGGTCACT 59.346 61.111 37.01 25.06 42.28 3.41
1170 2339 1.905215 CTGAAGAAGAAGGAGGAGGCA 59.095 52.381 0.00 0.00 0.00 4.75
1171 2340 2.304180 CTGAAGAAGAAGGAGGAGGCAA 59.696 50.000 0.00 0.00 0.00 4.52
1172 2341 2.039084 TGAAGAAGAAGGAGGAGGCAAC 59.961 50.000 0.00 0.00 0.00 4.17
1173 2342 0.988063 AGAAGAAGGAGGAGGCAACC 59.012 55.000 0.00 0.00 37.17 3.77
1174 2343 0.988063 GAAGAAGGAGGAGGCAACCT 59.012 55.000 3.00 3.00 43.64 3.50
1175 2344 1.352687 GAAGAAGGAGGAGGCAACCTT 59.647 52.381 0.00 0.00 45.16 3.50
1177 2346 0.391793 GAAGGAGGAGGCAACCTTCG 60.392 60.000 0.00 0.00 46.15 3.79
1178 2347 2.436824 GGAGGAGGCAACCTTCGC 60.437 66.667 4.85 0.00 40.73 4.70
1179 2348 2.347490 GAGGAGGCAACCTTCGCA 59.653 61.111 4.85 0.00 40.73 5.10
1273 2459 3.636231 CTCAACCTGCCCGGGACA 61.636 66.667 29.31 20.98 36.97 4.02
1324 2511 3.309954 GGTGCTTTTAGTTAGATGGAGCG 59.690 47.826 0.00 0.00 0.00 5.03
1370 2557 5.535333 AGTTTGGAGTTGATGATGCTTTTG 58.465 37.500 0.00 0.00 0.00 2.44
1371 2558 5.069516 AGTTTGGAGTTGATGATGCTTTTGT 59.930 36.000 0.00 0.00 0.00 2.83
1374 2561 5.291178 TGGAGTTGATGATGCTTTTGTTTG 58.709 37.500 0.00 0.00 0.00 2.93
1375 2562 5.163426 TGGAGTTGATGATGCTTTTGTTTGT 60.163 36.000 0.00 0.00 0.00 2.83
1376 2563 5.176223 GGAGTTGATGATGCTTTTGTTTGTG 59.824 40.000 0.00 0.00 0.00 3.33
1377 2564 5.663456 AGTTGATGATGCTTTTGTTTGTGT 58.337 33.333 0.00 0.00 0.00 3.72
1378 2565 5.521010 AGTTGATGATGCTTTTGTTTGTGTG 59.479 36.000 0.00 0.00 0.00 3.82
1379 2566 5.259832 TGATGATGCTTTTGTTTGTGTGA 57.740 34.783 0.00 0.00 0.00 3.58
1380 2567 5.658468 TGATGATGCTTTTGTTTGTGTGAA 58.342 33.333 0.00 0.00 0.00 3.18
1381 2568 6.282167 TGATGATGCTTTTGTTTGTGTGAAT 58.718 32.000 0.00 0.00 0.00 2.57
1382 2569 5.970140 TGATGCTTTTGTTTGTGTGAATG 57.030 34.783 0.00 0.00 0.00 2.67
1388 2577 5.294060 GCTTTTGTTTGTGTGAATGGAATGT 59.706 36.000 0.00 0.00 0.00 2.71
1396 2585 2.017049 GTGAATGGAATGTTAGCCGCT 58.983 47.619 0.00 0.00 0.00 5.52
1413 2603 2.353704 CCGCTGTGTCTGGAAGTTATGA 60.354 50.000 0.00 0.00 33.76 2.15
1414 2604 3.525537 CGCTGTGTCTGGAAGTTATGAT 58.474 45.455 0.00 0.00 33.76 2.45
1431 2860 8.844865 AGTTATGATATATGATACTGCCTCCA 57.155 34.615 0.00 0.00 0.00 3.86
1483 2912 3.434940 AGGTGTAATGTTTCTGTCCCC 57.565 47.619 0.00 0.00 0.00 4.81
1485 2914 2.041216 GGTGTAATGTTTCTGTCCCCCT 59.959 50.000 0.00 0.00 0.00 4.79
1486 2915 3.344515 GTGTAATGTTTCTGTCCCCCTC 58.655 50.000 0.00 0.00 0.00 4.30
1487 2916 2.983192 TGTAATGTTTCTGTCCCCCTCA 59.017 45.455 0.00 0.00 0.00 3.86
1488 2917 2.887151 AATGTTTCTGTCCCCCTCAG 57.113 50.000 0.00 0.00 0.00 3.35
1489 2918 2.044793 ATGTTTCTGTCCCCCTCAGA 57.955 50.000 0.00 0.00 39.71 3.27
1490 2919 1.814429 TGTTTCTGTCCCCCTCAGAA 58.186 50.000 4.56 4.56 46.01 3.02
1496 2925 5.796502 TTCTGTCCCCCTCAGAAATAAAT 57.203 39.130 5.99 0.00 45.14 1.40
1497 2926 5.373812 TCTGTCCCCCTCAGAAATAAATC 57.626 43.478 0.00 0.00 38.71 2.17
1498 2927 4.788075 TCTGTCCCCCTCAGAAATAAATCA 59.212 41.667 0.00 0.00 38.71 2.57
1499 2928 5.104360 TCTGTCCCCCTCAGAAATAAATCAG 60.104 44.000 0.00 0.00 38.71 2.90
1500 2929 4.079787 TGTCCCCCTCAGAAATAAATCAGG 60.080 45.833 0.00 0.00 0.00 3.86
1501 2930 3.117512 TCCCCCTCAGAAATAAATCAGGC 60.118 47.826 0.00 0.00 0.00 4.85
1502 2931 3.225940 CCCCTCAGAAATAAATCAGGCC 58.774 50.000 0.00 0.00 0.00 5.19
1503 2932 3.117360 CCCCTCAGAAATAAATCAGGCCT 60.117 47.826 0.00 0.00 0.00 5.19
1504 2933 4.540715 CCCTCAGAAATAAATCAGGCCTT 58.459 43.478 0.00 0.00 0.00 4.35
1505 2934 4.958581 CCCTCAGAAATAAATCAGGCCTTT 59.041 41.667 0.00 0.00 0.00 3.11
1506 2935 5.423290 CCCTCAGAAATAAATCAGGCCTTTT 59.577 40.000 0.00 4.83 0.00 2.27
1507 2936 6.070596 CCCTCAGAAATAAATCAGGCCTTTTT 60.071 38.462 0.00 9.23 0.00 1.94
1549 2981 5.048713 AGGCTTTTCGATGTTTGACCTTTAG 60.049 40.000 0.00 0.00 0.00 1.85
1628 3060 2.589407 CGCTGTGTTGAAATATGTTGCG 59.411 45.455 0.00 0.00 0.00 4.85
1629 3061 2.916716 GCTGTGTTGAAATATGTTGCGG 59.083 45.455 0.00 0.00 0.00 5.69
1641 3082 0.832135 TGTTGCGGTCCCTCTCTCTT 60.832 55.000 0.00 0.00 0.00 2.85
1642 3083 0.108567 GTTGCGGTCCCTCTCTCTTC 60.109 60.000 0.00 0.00 0.00 2.87
1659 3100 3.926616 TCTTCATCAGTCCGGTCTTTTC 58.073 45.455 0.00 0.00 0.00 2.29
1726 3172 4.394920 TGATAAACTGCATCCGTTCCTTTC 59.605 41.667 0.00 0.00 0.00 2.62
1730 3176 3.222603 ACTGCATCCGTTCCTTTCTTTT 58.777 40.909 0.00 0.00 0.00 2.27
1731 3177 3.636764 ACTGCATCCGTTCCTTTCTTTTT 59.363 39.130 0.00 0.00 0.00 1.94
1747 3193 1.964552 TTTTTGGGCAGCAAACCATG 58.035 45.000 0.00 0.00 36.48 3.66
1748 3194 0.835941 TTTTGGGCAGCAAACCATGT 59.164 45.000 0.00 0.00 36.48 3.21
1749 3195 0.392336 TTTGGGCAGCAAACCATGTC 59.608 50.000 0.00 0.00 36.48 3.06
1750 3196 0.469705 TTGGGCAGCAAACCATGTCT 60.470 50.000 0.00 0.00 36.48 3.41
1751 3197 0.469705 TGGGCAGCAAACCATGTCTT 60.470 50.000 0.00 0.00 0.00 3.01
1752 3198 0.244721 GGGCAGCAAACCATGTCTTC 59.755 55.000 0.00 0.00 0.00 2.87
1753 3199 0.244721 GGCAGCAAACCATGTCTTCC 59.755 55.000 0.00 0.00 0.00 3.46
1754 3200 0.961019 GCAGCAAACCATGTCTTCCA 59.039 50.000 0.00 0.00 0.00 3.53
1755 3201 1.336240 GCAGCAAACCATGTCTTCCAC 60.336 52.381 0.00 0.00 0.00 4.02
1756 3202 1.955778 CAGCAAACCATGTCTTCCACA 59.044 47.619 0.00 0.00 40.18 4.17
1764 3210 2.519771 ATGTCTTCCACATGGTGCAT 57.480 45.000 0.00 0.00 44.70 3.96
1765 3211 1.825090 TGTCTTCCACATGGTGCATC 58.175 50.000 0.00 0.00 36.34 3.91
1766 3212 1.098050 GTCTTCCACATGGTGCATCC 58.902 55.000 0.00 0.00 36.34 3.51
1767 3213 0.392863 TCTTCCACATGGTGCATCCG 60.393 55.000 0.00 0.00 39.52 4.18
1768 3214 1.996786 CTTCCACATGGTGCATCCGC 61.997 60.000 0.00 0.00 39.52 5.54
1769 3215 3.520862 CCACATGGTGCATCCGCC 61.521 66.667 0.00 0.00 42.13 6.13
1770 3216 3.520862 CACATGGTGCATCCGCCC 61.521 66.667 0.00 0.00 41.05 6.13
1771 3217 3.731728 ACATGGTGCATCCGCCCT 61.732 61.111 0.00 0.00 41.05 5.19
1772 3218 2.440796 CATGGTGCATCCGCCCTT 60.441 61.111 0.00 0.00 41.05 3.95
1773 3219 2.053865 CATGGTGCATCCGCCCTTT 61.054 57.895 0.00 0.00 41.05 3.11
1774 3220 1.754234 ATGGTGCATCCGCCCTTTC 60.754 57.895 0.00 0.00 41.05 2.62
1775 3221 2.044946 GGTGCATCCGCCCTTTCT 60.045 61.111 0.00 0.00 37.32 2.52
1776 3222 1.678970 GGTGCATCCGCCCTTTCTT 60.679 57.895 0.00 0.00 37.32 2.52
1777 3223 1.250840 GGTGCATCCGCCCTTTCTTT 61.251 55.000 0.00 0.00 37.32 2.52
1778 3224 0.109132 GTGCATCCGCCCTTTCTTTG 60.109 55.000 0.00 0.00 37.32 2.77
1779 3225 0.539438 TGCATCCGCCCTTTCTTTGT 60.539 50.000 0.00 0.00 37.32 2.83
1780 3226 0.603065 GCATCCGCCCTTTCTTTGTT 59.397 50.000 0.00 0.00 0.00 2.83
1781 3227 1.000843 GCATCCGCCCTTTCTTTGTTT 59.999 47.619 0.00 0.00 0.00 2.83
1782 3228 2.926586 GCATCCGCCCTTTCTTTGTTTC 60.927 50.000 0.00 0.00 0.00 2.78
1783 3229 1.324383 TCCGCCCTTTCTTTGTTTCC 58.676 50.000 0.00 0.00 0.00 3.13
1784 3230 1.133606 TCCGCCCTTTCTTTGTTTCCT 60.134 47.619 0.00 0.00 0.00 3.36
1785 3231 2.106857 TCCGCCCTTTCTTTGTTTCCTA 59.893 45.455 0.00 0.00 0.00 2.94
1786 3232 2.488153 CCGCCCTTTCTTTGTTTCCTAG 59.512 50.000 0.00 0.00 0.00 3.02
1787 3233 2.488153 CGCCCTTTCTTTGTTTCCTAGG 59.512 50.000 0.82 0.82 0.00 3.02
1788 3234 3.763057 GCCCTTTCTTTGTTTCCTAGGA 58.237 45.455 7.62 7.62 0.00 2.94
1789 3235 4.149598 GCCCTTTCTTTGTTTCCTAGGAA 58.850 43.478 20.72 20.72 0.00 3.36
1790 3236 4.772624 GCCCTTTCTTTGTTTCCTAGGAAT 59.227 41.667 24.82 0.00 33.79 3.01
1791 3237 5.336770 GCCCTTTCTTTGTTTCCTAGGAATG 60.337 44.000 24.82 12.45 33.79 2.67
1792 3238 6.010219 CCCTTTCTTTGTTTCCTAGGAATGA 58.990 40.000 24.82 11.59 33.79 2.57
1793 3239 6.151817 CCCTTTCTTTGTTTCCTAGGAATGAG 59.848 42.308 24.82 18.00 33.79 2.90
1795 3241 5.179452 TCTTTGTTTCCTAGGAATGAGGG 57.821 43.478 24.82 14.61 34.56 4.30
1803 3249 2.252072 TAGGAATGAGGGGCGTGTGC 62.252 60.000 0.00 0.00 41.71 4.57
1826 3272 4.530857 CACGGGACCGGGCTGATC 62.531 72.222 7.57 0.00 44.69 2.92
1828 3274 3.550431 CGGGACCGGGCTGATCAT 61.550 66.667 7.57 0.00 35.56 2.45
1829 3275 2.111878 GGGACCGGGCTGATCATG 59.888 66.667 7.57 0.00 0.00 3.07
1838 3291 1.386533 GGCTGATCATGTGTTGGGAG 58.613 55.000 0.00 0.00 0.00 4.30
1868 3321 2.902457 TTCCCCAAGAAGGTCCGGC 61.902 63.158 0.00 0.00 34.66 6.13
1869 3322 3.646715 CCCCAAGAAGGTCCGGCA 61.647 66.667 0.00 0.00 34.66 5.69
1872 3325 1.315257 CCCAAGAAGGTCCGGCAATG 61.315 60.000 0.00 0.00 34.66 2.82
1875 3328 1.885887 CAAGAAGGTCCGGCAATGAAA 59.114 47.619 0.00 0.00 0.00 2.69
1889 3343 6.035975 CCGGCAATGAAAGAATTTGGTTAATC 59.964 38.462 0.00 0.00 39.27 1.75
1890 3344 6.589523 CGGCAATGAAAGAATTTGGTTAATCA 59.410 34.615 0.00 0.00 39.27 2.57
1892 3346 8.949177 GGCAATGAAAGAATTTGGTTAATCAAT 58.051 29.630 1.11 0.00 39.27 2.57
1893 3347 9.763465 GCAATGAAAGAATTTGGTTAATCAATG 57.237 29.630 1.11 0.00 39.27 2.82
1901 3355 9.410556 AGAATTTGGTTAATCAATGAAAAGTCG 57.589 29.630 1.11 0.00 0.00 4.18
1903 3357 6.642707 TTGGTTAATCAATGAAAAGTCGGT 57.357 33.333 0.00 0.00 0.00 4.69
1906 3360 6.920758 TGGTTAATCAATGAAAAGTCGGTTTG 59.079 34.615 0.00 0.00 0.00 2.93
1907 3361 6.128929 GGTTAATCAATGAAAAGTCGGTTTGC 60.129 38.462 0.00 0.00 0.00 3.68
1908 3362 3.363341 TCAATGAAAAGTCGGTTTGCC 57.637 42.857 0.00 0.00 0.00 4.52
1909 3363 2.690497 TCAATGAAAAGTCGGTTTGCCA 59.310 40.909 0.00 0.00 34.09 4.92
1910 3364 3.131223 TCAATGAAAAGTCGGTTTGCCAA 59.869 39.130 0.00 0.00 34.09 4.52
1911 3365 3.810310 ATGAAAAGTCGGTTTGCCAAA 57.190 38.095 0.00 0.00 34.09 3.28
1912 3366 3.810310 TGAAAAGTCGGTTTGCCAAAT 57.190 38.095 0.00 0.00 34.09 2.32
1913 3367 3.452474 TGAAAAGTCGGTTTGCCAAATG 58.548 40.909 0.00 0.00 34.09 2.32
1914 3368 2.524569 AAAGTCGGTTTGCCAAATGG 57.475 45.000 0.00 0.00 38.53 3.16
1924 3378 2.120274 CCAAATGGCCACCCACCT 59.880 61.111 8.16 0.00 45.77 4.00
1925 3379 2.285024 CCAAATGGCCACCCACCTG 61.285 63.158 8.16 0.00 45.77 4.00
1926 3380 1.228831 CAAATGGCCACCCACCTGA 60.229 57.895 8.16 0.00 45.77 3.86
1927 3381 0.615544 CAAATGGCCACCCACCTGAT 60.616 55.000 8.16 0.00 45.77 2.90
1928 3382 1.006813 AAATGGCCACCCACCTGATA 58.993 50.000 8.16 0.00 45.77 2.15
1929 3383 1.234806 AATGGCCACCCACCTGATAT 58.765 50.000 8.16 0.00 45.77 1.63
1930 3384 0.479815 ATGGCCACCCACCTGATATG 59.520 55.000 8.16 0.00 45.77 1.78
1931 3385 0.623031 TGGCCACCCACCTGATATGA 60.623 55.000 0.00 0.00 35.79 2.15
1932 3386 0.773644 GGCCACCCACCTGATATGAT 59.226 55.000 0.00 0.00 0.00 2.45
1933 3387 1.271597 GGCCACCCACCTGATATGATC 60.272 57.143 0.00 0.00 0.00 2.92
1934 3388 1.421268 GCCACCCACCTGATATGATCA 59.579 52.381 0.00 0.00 37.76 2.92
1935 3389 2.040813 GCCACCCACCTGATATGATCAT 59.959 50.000 13.81 13.81 38.85 2.45
1936 3390 3.871463 GCCACCCACCTGATATGATCATC 60.871 52.174 12.53 0.00 38.85 2.92
1937 3391 3.586174 CCACCCACCTGATATGATCATCT 59.414 47.826 12.53 1.54 38.85 2.90
1938 3392 4.323333 CCACCCACCTGATATGATCATCTC 60.323 50.000 12.53 12.74 38.85 2.75
1939 3393 4.285260 CACCCACCTGATATGATCATCTCA 59.715 45.833 19.36 19.36 38.85 3.27
1940 3394 4.285517 ACCCACCTGATATGATCATCTCAC 59.714 45.833 17.30 6.94 38.85 3.51
1941 3395 4.492611 CCACCTGATATGATCATCTCACG 58.507 47.826 17.30 15.69 38.85 4.35
1942 3396 4.219288 CCACCTGATATGATCATCTCACGA 59.781 45.833 17.30 0.00 38.85 4.35
1943 3397 5.105432 CCACCTGATATGATCATCTCACGAT 60.105 44.000 17.30 3.19 38.85 3.73
1944 3398 6.096001 CCACCTGATATGATCATCTCACGATA 59.904 42.308 17.30 0.00 38.85 2.92
1945 3399 7.363268 CCACCTGATATGATCATCTCACGATAA 60.363 40.741 17.30 0.00 38.85 1.75
1946 3400 7.487509 CACCTGATATGATCATCTCACGATAAC 59.512 40.741 17.30 0.00 38.85 1.89
1947 3401 7.395772 ACCTGATATGATCATCTCACGATAACT 59.604 37.037 17.30 0.00 38.85 2.24
1948 3402 8.897752 CCTGATATGATCATCTCACGATAACTA 58.102 37.037 17.30 0.00 38.85 2.24
1951 3405 9.232082 GATATGATCATCTCACGATAACTAAGC 57.768 37.037 12.53 0.00 36.48 3.09
1952 3406 5.452777 TGATCATCTCACGATAACTAAGCG 58.547 41.667 0.00 0.00 0.00 4.68
1953 3407 4.224715 TCATCTCACGATAACTAAGCGG 57.775 45.455 0.00 0.00 0.00 5.52
1954 3408 3.881089 TCATCTCACGATAACTAAGCGGA 59.119 43.478 0.00 0.00 0.00 5.54
1955 3409 4.519350 TCATCTCACGATAACTAAGCGGAT 59.481 41.667 0.00 0.00 0.00 4.18
1956 3410 4.913335 TCTCACGATAACTAAGCGGATT 57.087 40.909 0.00 0.00 0.00 3.01
1957 3411 5.258456 TCTCACGATAACTAAGCGGATTT 57.742 39.130 0.00 0.00 0.00 2.17
1958 3412 6.381481 TCTCACGATAACTAAGCGGATTTA 57.619 37.500 0.00 0.00 0.00 1.40
1959 3413 6.978338 TCTCACGATAACTAAGCGGATTTAT 58.022 36.000 0.00 0.00 0.00 1.40
1960 3414 7.431249 TCTCACGATAACTAAGCGGATTTATT 58.569 34.615 0.00 0.00 0.00 1.40
1961 3415 7.594015 TCTCACGATAACTAAGCGGATTTATTC 59.406 37.037 0.00 0.00 0.00 1.75
1962 3416 6.643770 TCACGATAACTAAGCGGATTTATTCC 59.356 38.462 0.00 0.00 41.59 3.01
1963 3417 6.645415 CACGATAACTAAGCGGATTTATTCCT 59.355 38.462 0.00 0.00 42.99 3.36
1964 3418 7.811236 CACGATAACTAAGCGGATTTATTCCTA 59.189 37.037 0.00 0.00 42.99 2.94
1965 3419 8.027771 ACGATAACTAAGCGGATTTATTCCTAG 58.972 37.037 0.00 0.00 42.99 3.02
1966 3420 8.242053 CGATAACTAAGCGGATTTATTCCTAGA 58.758 37.037 0.00 0.00 42.99 2.43
1975 3429 9.793259 AGCGGATTTATTCCTAGATTTATTTCA 57.207 29.630 0.00 0.00 42.99 2.69
1986 3440 9.681062 TCCTAGATTTATTTCAGAATTTTCGGT 57.319 29.630 0.00 0.00 0.00 4.69
1987 3441 9.722056 CCTAGATTTATTTCAGAATTTTCGGTG 57.278 33.333 0.00 0.00 0.00 4.94
1990 3444 9.793252 AGATTTATTTCAGAATTTTCGGTGATG 57.207 29.630 0.00 0.00 0.00 3.07
1991 3445 7.810766 TTTATTTCAGAATTTTCGGTGATGC 57.189 32.000 0.00 0.00 0.00 3.91
1992 3446 3.469899 TTCAGAATTTTCGGTGATGCG 57.530 42.857 0.00 0.00 0.00 4.73
1993 3447 1.130373 TCAGAATTTTCGGTGATGCGC 59.870 47.619 0.00 0.00 0.00 6.09
1994 3448 0.096976 AGAATTTTCGGTGATGCGCG 59.903 50.000 0.00 0.00 0.00 6.86
1995 3449 0.179200 GAATTTTCGGTGATGCGCGT 60.179 50.000 8.43 0.00 0.00 6.01
1996 3450 0.239879 AATTTTCGGTGATGCGCGTT 59.760 45.000 8.43 0.00 0.00 4.84
1997 3451 0.179200 ATTTTCGGTGATGCGCGTTC 60.179 50.000 8.43 6.08 0.00 3.95
1998 3452 1.499688 TTTTCGGTGATGCGCGTTCA 61.500 50.000 8.43 9.01 0.00 3.18
1999 3453 1.896339 TTTCGGTGATGCGCGTTCAG 61.896 55.000 8.43 6.37 0.00 3.02
2000 3454 3.112075 CGGTGATGCGCGTTCAGT 61.112 61.111 8.43 0.00 0.00 3.41
2001 3455 2.476051 GGTGATGCGCGTTCAGTG 59.524 61.111 8.43 0.00 0.00 3.66
2009 3463 2.729862 GCGTTCAGTGCGAGACGT 60.730 61.111 0.00 0.00 0.00 4.34
2010 3464 2.708059 GCGTTCAGTGCGAGACGTC 61.708 63.158 7.70 7.70 0.00 4.34
2011 3465 2.081212 CGTTCAGTGCGAGACGTCC 61.081 63.158 13.01 2.76 0.00 4.79
2012 3466 1.733399 GTTCAGTGCGAGACGTCCC 60.733 63.158 13.01 0.00 0.00 4.46
2013 3467 3.263503 TTCAGTGCGAGACGTCCCG 62.264 63.158 15.75 15.75 0.00 5.14
2014 3468 4.039357 CAGTGCGAGACGTCCCGT 62.039 66.667 20.76 0.00 45.10 5.28
2015 3469 3.292936 AGTGCGAGACGTCCCGTT 61.293 61.111 20.76 4.52 41.37 4.44
2016 3470 3.103911 GTGCGAGACGTCCCGTTG 61.104 66.667 20.76 3.79 41.37 4.10
2017 3471 3.289062 TGCGAGACGTCCCGTTGA 61.289 61.111 20.76 2.75 41.37 3.18
2018 3472 2.804090 GCGAGACGTCCCGTTGAC 60.804 66.667 20.76 0.02 41.37 3.18
2019 3473 2.952245 CGAGACGTCCCGTTGACT 59.048 61.111 11.71 0.00 41.37 3.41
2020 3474 1.915614 GCGAGACGTCCCGTTGACTA 61.916 60.000 20.76 0.00 41.37 2.59
2021 3475 0.179205 CGAGACGTCCCGTTGACTAC 60.179 60.000 11.71 0.00 41.37 2.73
2030 3484 2.572284 GTTGACTACGAGGCGCCT 59.428 61.111 33.48 33.48 0.00 5.52
2031 3485 1.080025 GTTGACTACGAGGCGCCTT 60.080 57.895 33.34 19.18 0.00 4.35
2032 3486 0.669625 GTTGACTACGAGGCGCCTTT 60.670 55.000 33.34 23.04 0.00 3.11
2033 3487 0.669318 TTGACTACGAGGCGCCTTTG 60.669 55.000 33.34 27.56 0.00 2.77
2034 3488 1.214589 GACTACGAGGCGCCTTTGA 59.785 57.895 33.34 17.37 0.00 2.69
2035 3489 0.179108 GACTACGAGGCGCCTTTGAT 60.179 55.000 33.34 18.43 0.00 2.57
2036 3490 0.460284 ACTACGAGGCGCCTTTGATG 60.460 55.000 33.34 22.88 0.00 3.07
2037 3491 0.179111 CTACGAGGCGCCTTTGATGA 60.179 55.000 33.34 15.15 0.00 2.92
2038 3492 0.459585 TACGAGGCGCCTTTGATGAC 60.460 55.000 33.34 15.10 0.00 3.06
2039 3493 1.448540 CGAGGCGCCTTTGATGACT 60.449 57.895 33.34 4.05 0.00 3.41
2040 3494 1.021390 CGAGGCGCCTTTGATGACTT 61.021 55.000 33.34 3.09 0.00 3.01
2041 3495 0.729690 GAGGCGCCTTTGATGACTTC 59.270 55.000 33.34 10.12 0.00 3.01
2042 3496 1.021390 AGGCGCCTTTGATGACTTCG 61.021 55.000 27.08 0.00 0.00 3.79
2043 3497 1.298859 GGCGCCTTTGATGACTTCGT 61.299 55.000 22.15 0.00 0.00 3.85
2044 3498 0.095417 GCGCCTTTGATGACTTCGTC 59.905 55.000 0.00 0.00 0.00 4.20
2045 3499 1.428448 CGCCTTTGATGACTTCGTCA 58.572 50.000 0.00 0.00 46.90 4.35
2046 3500 1.798223 CGCCTTTGATGACTTCGTCAA 59.202 47.619 9.39 9.39 45.96 3.18
2054 3508 5.391312 TGATGACTTCGTCAATCTCAAGA 57.609 39.130 0.36 0.00 45.96 3.02
2055 3509 5.970592 TGATGACTTCGTCAATCTCAAGAT 58.029 37.500 0.36 0.00 45.96 2.40
2056 3510 5.809051 TGATGACTTCGTCAATCTCAAGATG 59.191 40.000 0.36 0.00 45.96 2.90
2057 3511 5.391312 TGACTTCGTCAATCTCAAGATGA 57.609 39.130 0.00 0.00 39.78 2.92
2058 3512 5.970592 TGACTTCGTCAATCTCAAGATGAT 58.029 37.500 0.00 0.00 39.78 2.45
2059 3513 6.401394 TGACTTCGTCAATCTCAAGATGATT 58.599 36.000 0.00 0.00 39.78 2.57
2060 3514 7.547227 TGACTTCGTCAATCTCAAGATGATTA 58.453 34.615 0.00 0.00 39.78 1.75
2061 3515 8.200120 TGACTTCGTCAATCTCAAGATGATTAT 58.800 33.333 0.00 0.00 39.78 1.28
2062 3516 8.586570 ACTTCGTCAATCTCAAGATGATTATC 57.413 34.615 0.00 0.00 34.49 1.75
2063 3517 8.420222 ACTTCGTCAATCTCAAGATGATTATCT 58.580 33.333 0.00 0.00 45.51 1.98
2064 3518 8.585189 TTCGTCAATCTCAAGATGATTATCTG 57.415 34.615 0.00 0.00 42.80 2.90
2065 3519 6.644181 TCGTCAATCTCAAGATGATTATCTGC 59.356 38.462 0.00 0.00 42.80 4.26
2066 3520 6.399775 CGTCAATCTCAAGATGATTATCTGCG 60.400 42.308 0.00 0.00 42.80 5.18
2067 3521 6.423302 GTCAATCTCAAGATGATTATCTGCGT 59.577 38.462 0.00 0.00 42.80 5.24
2068 3522 6.423001 TCAATCTCAAGATGATTATCTGCGTG 59.577 38.462 0.00 0.00 42.80 5.34
2069 3523 5.268118 TCTCAAGATGATTATCTGCGTGT 57.732 39.130 0.00 0.00 42.80 4.49
2070 3524 5.045872 TCTCAAGATGATTATCTGCGTGTG 58.954 41.667 0.00 0.00 42.80 3.82
2071 3525 4.758688 TCAAGATGATTATCTGCGTGTGT 58.241 39.130 0.00 0.00 42.80 3.72
2072 3526 5.901552 TCAAGATGATTATCTGCGTGTGTA 58.098 37.500 0.00 0.00 42.80 2.90
2073 3527 6.515832 TCAAGATGATTATCTGCGTGTGTAT 58.484 36.000 0.00 0.00 42.80 2.29
2074 3528 6.421801 TCAAGATGATTATCTGCGTGTGTATG 59.578 38.462 0.00 0.00 42.80 2.39
2075 3529 5.847304 AGATGATTATCTGCGTGTGTATGT 58.153 37.500 0.00 0.00 42.04 2.29
2076 3530 6.283694 AGATGATTATCTGCGTGTGTATGTT 58.716 36.000 0.00 0.00 42.04 2.71
2077 3531 5.966636 TGATTATCTGCGTGTGTATGTTC 57.033 39.130 0.00 0.00 0.00 3.18
2078 3532 5.415221 TGATTATCTGCGTGTGTATGTTCA 58.585 37.500 0.00 0.00 0.00 3.18
2079 3533 6.048509 TGATTATCTGCGTGTGTATGTTCAT 58.951 36.000 0.00 0.00 0.00 2.57
2080 3534 7.206687 TGATTATCTGCGTGTGTATGTTCATA 58.793 34.615 0.00 0.00 0.00 2.15
2081 3535 7.382218 TGATTATCTGCGTGTGTATGTTCATAG 59.618 37.037 0.00 0.00 0.00 2.23
2082 3536 4.712122 TCTGCGTGTGTATGTTCATAGA 57.288 40.909 0.00 0.00 0.00 1.98
2083 3537 4.672409 TCTGCGTGTGTATGTTCATAGAG 58.328 43.478 0.00 0.00 0.00 2.43
2084 3538 4.398044 TCTGCGTGTGTATGTTCATAGAGA 59.602 41.667 0.00 0.00 0.00 3.10
2085 3539 5.067805 TCTGCGTGTGTATGTTCATAGAGAT 59.932 40.000 0.00 0.00 0.00 2.75
2086 3540 5.043248 TGCGTGTGTATGTTCATAGAGATG 58.957 41.667 3.23 3.23 0.00 2.90
2087 3541 5.163561 TGCGTGTGTATGTTCATAGAGATGA 60.164 40.000 9.37 0.00 40.45 2.92
2088 3542 5.400782 GCGTGTGTATGTTCATAGAGATGAG 59.599 44.000 9.37 0.00 43.03 2.90
2089 3543 6.499172 CGTGTGTATGTTCATAGAGATGAGT 58.501 40.000 1.86 0.00 43.03 3.41
2090 3544 6.416161 CGTGTGTATGTTCATAGAGATGAGTG 59.584 42.308 1.86 0.00 43.03 3.51
2091 3545 7.261325 GTGTGTATGTTCATAGAGATGAGTGT 58.739 38.462 0.00 0.00 43.03 3.55
2092 3546 8.406297 GTGTGTATGTTCATAGAGATGAGTGTA 58.594 37.037 0.00 0.00 43.03 2.90
2093 3547 9.136323 TGTGTATGTTCATAGAGATGAGTGTAT 57.864 33.333 0.00 0.00 43.03 2.29
2094 3548 9.404348 GTGTATGTTCATAGAGATGAGTGTATG 57.596 37.037 0.00 0.00 43.03 2.39
2095 3549 8.084684 TGTATGTTCATAGAGATGAGTGTATGC 58.915 37.037 0.00 0.00 43.03 3.14
2096 3550 5.523369 TGTTCATAGAGATGAGTGTATGCG 58.477 41.667 0.00 0.00 43.03 4.73
2097 3551 4.166187 TCATAGAGATGAGTGTATGCGC 57.834 45.455 0.00 0.00 37.15 6.09
2098 3552 2.688364 TAGAGATGAGTGTATGCGCG 57.312 50.000 0.00 0.00 0.00 6.86
2099 3553 0.031314 AGAGATGAGTGTATGCGCGG 59.969 55.000 8.83 0.00 0.00 6.46
2100 3554 0.030773 GAGATGAGTGTATGCGCGGA 59.969 55.000 8.83 5.00 0.00 5.54
2101 3555 0.676184 AGATGAGTGTATGCGCGGAT 59.324 50.000 19.39 19.39 0.00 4.18
2102 3556 1.886542 AGATGAGTGTATGCGCGGATA 59.113 47.619 16.90 16.90 0.00 2.59
2103 3557 2.493675 AGATGAGTGTATGCGCGGATAT 59.506 45.455 23.36 7.80 0.00 1.63
2104 3558 3.694566 AGATGAGTGTATGCGCGGATATA 59.305 43.478 23.36 18.06 0.00 0.86
2105 3559 4.339530 AGATGAGTGTATGCGCGGATATAT 59.660 41.667 23.36 12.15 0.00 0.86
2106 3560 3.769536 TGAGTGTATGCGCGGATATATG 58.230 45.455 23.36 0.00 0.00 1.78
2107 3561 3.442273 TGAGTGTATGCGCGGATATATGA 59.558 43.478 23.36 6.27 0.00 2.15
2108 3562 4.033990 AGTGTATGCGCGGATATATGAG 57.966 45.455 23.36 0.00 0.00 2.90
2109 3563 2.535984 GTGTATGCGCGGATATATGAGC 59.464 50.000 23.36 9.89 0.00 4.26
2115 3569 1.781429 CGCGGATATATGAGCGTATGC 59.219 52.381 18.09 0.00 46.48 3.14
2126 3580 2.886859 GCGTATGCGTCTATGCTGT 58.113 52.632 4.81 0.00 40.81 4.40
2127 3581 0.504384 GCGTATGCGTCTATGCTGTG 59.496 55.000 4.81 0.00 40.81 3.66
2128 3582 1.840181 CGTATGCGTCTATGCTGTGT 58.160 50.000 0.00 0.00 35.36 3.72
2129 3583 2.193447 CGTATGCGTCTATGCTGTGTT 58.807 47.619 0.00 0.00 35.36 3.32
2130 3584 2.216488 CGTATGCGTCTATGCTGTGTTC 59.784 50.000 0.00 0.00 35.36 3.18
2131 3585 2.385013 ATGCGTCTATGCTGTGTTCA 57.615 45.000 0.00 0.00 35.36 3.18
2132 3586 2.162319 TGCGTCTATGCTGTGTTCAA 57.838 45.000 0.00 0.00 35.36 2.69
2133 3587 2.488952 TGCGTCTATGCTGTGTTCAAA 58.511 42.857 0.00 0.00 35.36 2.69
2134 3588 2.875317 TGCGTCTATGCTGTGTTCAAAA 59.125 40.909 0.00 0.00 35.36 2.44
2135 3589 3.313803 TGCGTCTATGCTGTGTTCAAAAA 59.686 39.130 0.00 0.00 35.36 1.94
2154 3608 2.939460 AAAAACTGAGCTGCGTGTTT 57.061 40.000 12.31 12.31 34.59 2.83
2155 3609 2.939460 AAAACTGAGCTGCGTGTTTT 57.061 40.000 19.40 19.40 37.66 2.43
2156 3610 4.364415 AAAAACTGAGCTGCGTGTTTTA 57.636 36.364 22.68 0.00 40.36 1.52
2157 3611 3.609103 AAACTGAGCTGCGTGTTTTAG 57.391 42.857 12.31 0.00 29.64 1.85
2158 3612 1.512926 ACTGAGCTGCGTGTTTTAGG 58.487 50.000 0.00 0.00 0.00 2.69
2159 3613 0.798776 CTGAGCTGCGTGTTTTAGGG 59.201 55.000 0.00 0.00 0.00 3.53
2160 3614 0.394938 TGAGCTGCGTGTTTTAGGGA 59.605 50.000 0.00 0.00 0.00 4.20
2161 3615 0.796927 GAGCTGCGTGTTTTAGGGAC 59.203 55.000 0.00 0.00 0.00 4.46
2162 3616 0.107831 AGCTGCGTGTTTTAGGGACA 59.892 50.000 0.00 0.00 0.00 4.02
2163 3617 0.517316 GCTGCGTGTTTTAGGGACAG 59.483 55.000 0.00 0.00 0.00 3.51
2164 3618 1.878953 CTGCGTGTTTTAGGGACAGT 58.121 50.000 0.00 0.00 0.00 3.55
2165 3619 2.218603 CTGCGTGTTTTAGGGACAGTT 58.781 47.619 0.00 0.00 0.00 3.16
2166 3620 2.616842 CTGCGTGTTTTAGGGACAGTTT 59.383 45.455 0.00 0.00 0.00 2.66
2167 3621 3.018149 TGCGTGTTTTAGGGACAGTTTT 58.982 40.909 0.00 0.00 0.00 2.43
2168 3622 3.444388 TGCGTGTTTTAGGGACAGTTTTT 59.556 39.130 0.00 0.00 0.00 1.94
2184 3638 3.755810 TTTTTGGCCGATTCTCCCA 57.244 47.368 0.00 0.00 0.00 4.37
2185 3639 1.544724 TTTTTGGCCGATTCTCCCAG 58.455 50.000 0.00 0.00 0.00 4.45
2186 3640 0.695924 TTTTGGCCGATTCTCCCAGA 59.304 50.000 0.00 0.00 0.00 3.86
2187 3641 0.695924 TTTGGCCGATTCTCCCAGAA 59.304 50.000 0.00 0.00 38.78 3.02
2188 3642 0.918983 TTGGCCGATTCTCCCAGAAT 59.081 50.000 0.00 0.00 46.84 2.40
2189 3643 0.918983 TGGCCGATTCTCCCAGAATT 59.081 50.000 0.00 0.00 44.41 2.17
2190 3644 1.312815 GGCCGATTCTCCCAGAATTG 58.687 55.000 6.53 6.53 44.41 2.32
2191 3645 0.665298 GCCGATTCTCCCAGAATTGC 59.335 55.000 7.69 6.87 44.41 3.56
2192 3646 1.312815 CCGATTCTCCCAGAATTGCC 58.687 55.000 7.69 0.00 44.41 4.52
2193 3647 1.312815 CGATTCTCCCAGAATTGCCC 58.687 55.000 0.37 0.00 44.41 5.36
2194 3648 1.697284 GATTCTCCCAGAATTGCCCC 58.303 55.000 0.37 0.00 44.41 5.80
2195 3649 0.262876 ATTCTCCCAGAATTGCCCCC 59.737 55.000 0.00 0.00 41.90 5.40
2209 3663 2.356667 CCCCCTCCCAACTTCTGC 59.643 66.667 0.00 0.00 0.00 4.26
2210 3664 2.356667 CCCCTCCCAACTTCTGCC 59.643 66.667 0.00 0.00 0.00 4.85
2211 3665 2.538141 CCCCTCCCAACTTCTGCCA 61.538 63.158 0.00 0.00 0.00 4.92
2212 3666 1.001641 CCCTCCCAACTTCTGCCAG 60.002 63.158 0.00 0.00 0.00 4.85
2213 3667 1.492133 CCCTCCCAACTTCTGCCAGA 61.492 60.000 0.00 0.00 0.00 3.86
2214 3668 0.401738 CCTCCCAACTTCTGCCAGAA 59.598 55.000 7.00 7.00 32.50 3.02
2215 3669 1.005215 CCTCCCAACTTCTGCCAGAAT 59.995 52.381 7.75 0.00 33.13 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.270414 ATGGCTGGCTGCTAGTCTGT 61.270 55.000 18.42 4.85 42.39 3.41
13 14 1.225426 CTTCCATGGCTGGCTGCTA 59.775 57.895 16.14 10.78 42.80 3.49
14 15 2.044252 CTTCCATGGCTGGCTGCT 60.044 61.111 16.14 0.00 42.80 4.24
15 16 1.679977 TTCTTCCATGGCTGGCTGC 60.680 57.895 6.96 7.96 42.80 5.25
16 17 0.323178 AGTTCTTCCATGGCTGGCTG 60.323 55.000 6.96 0.00 42.80 4.85
19 20 3.181526 GGAGTTCTTCCATGGCTGG 57.818 57.895 6.96 0.00 46.01 4.85
43 44 9.635520 GGTGTGTACATATGGTCATAATAGTAC 57.364 37.037 7.80 16.19 34.43 2.73
46 47 9.554395 TTTGGTGTGTACATATGGTCATAATAG 57.446 33.333 7.80 0.00 0.00 1.73
50 51 7.801104 AGATTTGGTGTGTACATATGGTCATA 58.199 34.615 7.80 1.57 0.00 2.15
52 53 6.061022 AGATTTGGTGTGTACATATGGTCA 57.939 37.500 7.80 2.93 0.00 4.02
53 54 6.374333 ACAAGATTTGGTGTGTACATATGGTC 59.626 38.462 7.80 0.16 34.12 4.02
54 55 6.150976 CACAAGATTTGGTGTGTACATATGGT 59.849 38.462 7.80 0.00 40.22 3.55
55 56 6.374053 TCACAAGATTTGGTGTGTACATATGG 59.626 38.462 7.80 0.00 44.45 2.74
56 57 7.376435 TCACAAGATTTGGTGTGTACATATG 57.624 36.000 0.00 0.00 44.45 1.78
57 58 7.994425 TTCACAAGATTTGGTGTGTACATAT 57.006 32.000 0.00 0.00 44.45 1.78
61 62 5.746721 GGTTTTCACAAGATTTGGTGTGTAC 59.253 40.000 3.92 0.00 44.45 2.90
64 65 5.009854 AGGTTTTCACAAGATTTGGTGTG 57.990 39.130 0.00 0.00 45.29 3.82
79 80 5.678955 ACTAGTACCATCCAGAGGTTTTC 57.321 43.478 0.00 0.00 40.54 2.29
80 81 6.021030 TGTACTAGTACCATCCAGAGGTTTT 58.979 40.000 26.41 0.00 40.54 2.43
81 82 5.586877 TGTACTAGTACCATCCAGAGGTTT 58.413 41.667 26.41 0.00 40.54 3.27
93 94 9.833182 GTACTGAAACTAAGTTGTACTAGTACC 57.167 37.037 26.41 14.30 33.88 3.34
94 95 9.535270 CGTACTGAAACTAAGTTGTACTAGTAC 57.465 37.037 23.58 23.58 35.61 2.73
95 96 9.273016 ACGTACTGAAACTAAGTTGTACTAGTA 57.727 33.333 0.00 0.00 0.00 1.82
96 97 8.159344 ACGTACTGAAACTAAGTTGTACTAGT 57.841 34.615 0.00 0.00 0.00 2.57
97 98 7.748241 GGACGTACTGAAACTAAGTTGTACTAG 59.252 40.741 0.00 0.00 0.00 2.57
98 99 7.571244 CGGACGTACTGAAACTAAGTTGTACTA 60.571 40.741 0.00 0.00 0.00 1.82
123 130 4.210120 GCTTACTGGAATTCTGATACAGCG 59.790 45.833 5.23 0.00 32.60 5.18
179 186 2.724349 GCTCTGCACAAGTGTTTGAAG 58.276 47.619 1.79 0.00 37.73 3.02
237 249 1.101331 GGAGCTCCCTTTCAATGCAG 58.899 55.000 23.19 0.00 0.00 4.41
280 292 3.356529 AGACCCTGCTTAACTCCATTG 57.643 47.619 0.00 0.00 0.00 2.82
313 336 8.404107 TCTTGGGTAATTTCTTTAGGAAACAG 57.596 34.615 0.00 0.00 45.29 3.16
325 349 5.705441 TGTGTGAGACATCTTGGGTAATTTC 59.295 40.000 0.00 0.00 0.00 2.17
520 566 1.198637 CAAAGCACTCTAGCAAGCACC 59.801 52.381 0.00 0.00 36.85 5.01
555 601 3.241530 AACACGGCCTGCTGAGGA 61.242 61.111 4.70 0.00 42.93 3.71
562 608 0.796312 GTACATCACAACACGGCCTG 59.204 55.000 0.00 0.21 0.00 4.85
582 628 5.355350 CCTCCTCATCAACCAAATACTGTTC 59.645 44.000 0.00 0.00 0.00 3.18
583 629 5.256474 CCTCCTCATCAACCAAATACTGTT 58.744 41.667 0.00 0.00 0.00 3.16
692 741 0.712979 ATCTGACTCCCCTCTGGTGA 59.287 55.000 0.00 0.00 34.77 4.02
761 813 9.781834 CAAAATACAGTCTGTACACTTTCAAAA 57.218 29.630 14.95 0.00 35.42 2.44
831 884 4.457603 CCGGTATCAAATTCAAACACAGGA 59.542 41.667 0.00 0.00 0.00 3.86
838 891 4.019858 TCCATGCCGGTATCAAATTCAAA 58.980 39.130 0.34 0.00 35.57 2.69
870 923 4.405680 TCCTCTGACAACTTGAGAGACAAA 59.594 41.667 8.45 0.00 38.08 2.83
902 956 2.276201 CGATCCAAGGTGCGAAACATA 58.724 47.619 0.00 0.00 0.00 2.29
921 975 6.854381 GTGGAAAATGTTACTTGAAGTTACCG 59.146 38.462 11.40 0.00 27.41 4.02
929 983 8.006298 ACAGAAATGTGGAAAATGTTACTTGA 57.994 30.769 0.00 0.00 0.00 3.02
932 986 6.777580 AGGACAGAAATGTGGAAAATGTTACT 59.222 34.615 0.00 0.00 0.00 2.24
970 2136 2.889503 CGACTAGGCTGCTGCTGC 60.890 66.667 21.42 21.42 39.59 5.25
971 2137 1.518133 GACGACTAGGCTGCTGCTG 60.518 63.158 15.64 0.77 39.59 4.41
973 2139 0.873743 GATGACGACTAGGCTGCTGC 60.874 60.000 7.10 7.10 38.76 5.25
974 2140 0.593518 CGATGACGACTAGGCTGCTG 60.594 60.000 0.00 0.00 42.66 4.41
975 2141 1.032657 ACGATGACGACTAGGCTGCT 61.033 55.000 0.00 0.00 42.66 4.24
976 2142 0.592754 GACGATGACGACTAGGCTGC 60.593 60.000 0.00 0.00 42.66 5.25
977 2143 0.316278 CGACGATGACGACTAGGCTG 60.316 60.000 0.00 0.00 42.66 4.85
978 2144 2.015382 CGACGATGACGACTAGGCT 58.985 57.895 0.00 0.00 42.66 4.58
979 2145 1.654743 GCGACGATGACGACTAGGC 60.655 63.158 0.00 0.00 42.66 3.93
1024 2193 2.549992 CCACCACATTCTTCGTCTTGGA 60.550 50.000 0.00 0.00 0.00 3.53
1131 2300 3.830178 TCAGGTCCTCAAACTTGTCGATA 59.170 43.478 0.00 0.00 0.00 2.92
1324 2511 3.431207 CCATCCATGCCAGGAATGAAAAC 60.431 47.826 9.38 0.00 41.92 2.43
1370 2557 4.923281 GGCTAACATTCCATTCACACAAAC 59.077 41.667 0.00 0.00 0.00 2.93
1371 2558 4.320861 CGGCTAACATTCCATTCACACAAA 60.321 41.667 0.00 0.00 0.00 2.83
1374 2561 2.477863 GCGGCTAACATTCCATTCACAC 60.478 50.000 0.00 0.00 0.00 3.82
1375 2562 1.742831 GCGGCTAACATTCCATTCACA 59.257 47.619 0.00 0.00 0.00 3.58
1376 2563 2.017049 AGCGGCTAACATTCCATTCAC 58.983 47.619 0.00 0.00 0.00 3.18
1377 2564 2.016318 CAGCGGCTAACATTCCATTCA 58.984 47.619 0.26 0.00 0.00 2.57
1378 2565 2.017049 ACAGCGGCTAACATTCCATTC 58.983 47.619 0.26 0.00 0.00 2.67
1379 2566 1.745087 CACAGCGGCTAACATTCCATT 59.255 47.619 0.26 0.00 0.00 3.16
1380 2567 1.340017 ACACAGCGGCTAACATTCCAT 60.340 47.619 0.26 0.00 0.00 3.41
1381 2568 0.036164 ACACAGCGGCTAACATTCCA 59.964 50.000 0.26 0.00 0.00 3.53
1382 2569 0.727398 GACACAGCGGCTAACATTCC 59.273 55.000 0.26 0.00 0.00 3.01
1388 2577 0.037326 CTTCCAGACACAGCGGCTAA 60.037 55.000 0.26 0.00 0.00 3.09
1413 2603 7.559335 TTGAAGTGGAGGCAGTATCATATAT 57.441 36.000 0.00 0.00 0.00 0.86
1414 2604 6.994421 TTGAAGTGGAGGCAGTATCATATA 57.006 37.500 0.00 0.00 0.00 0.86
1431 2860 4.273148 AGCGGAGACTGTATTTTGAAGT 57.727 40.909 0.00 0.00 0.00 3.01
1483 2912 6.535963 AAAAGGCCTGATTTATTTCTGAGG 57.464 37.500 5.69 0.00 0.00 3.86
1505 2934 5.245075 AGCCTGATTTATTTCCCACGAAAAA 59.755 36.000 0.00 0.00 41.25 1.94
1506 2935 4.770010 AGCCTGATTTATTTCCCACGAAAA 59.230 37.500 0.00 0.00 41.25 2.29
1507 2936 4.340617 AGCCTGATTTATTTCCCACGAAA 58.659 39.130 0.00 0.00 42.10 3.46
1508 2937 3.963129 AGCCTGATTTATTTCCCACGAA 58.037 40.909 0.00 0.00 0.00 3.85
1509 2938 3.644966 AGCCTGATTTATTTCCCACGA 57.355 42.857 0.00 0.00 0.00 4.35
1510 2939 4.718940 AAAGCCTGATTTATTTCCCACG 57.281 40.909 0.00 0.00 0.00 4.94
1511 2940 5.102313 CGAAAAGCCTGATTTATTTCCCAC 58.898 41.667 0.00 0.00 0.00 4.61
1512 2941 5.013547 TCGAAAAGCCTGATTTATTTCCCA 58.986 37.500 0.00 0.00 0.00 4.37
1513 2942 5.576447 TCGAAAAGCCTGATTTATTTCCC 57.424 39.130 0.00 0.00 0.00 3.97
1514 2943 6.564328 ACATCGAAAAGCCTGATTTATTTCC 58.436 36.000 0.00 0.00 0.00 3.13
1549 2981 2.812011 ACTCCATCCGTTGCAAAACTAC 59.188 45.455 0.00 0.00 0.00 2.73
1628 3060 2.693074 GACTGATGAAGAGAGAGGGACC 59.307 54.545 0.00 0.00 0.00 4.46
1629 3061 2.693074 GGACTGATGAAGAGAGAGGGAC 59.307 54.545 0.00 0.00 0.00 4.46
1641 3082 1.890489 TCGAAAAGACCGGACTGATGA 59.110 47.619 9.46 1.03 0.00 2.92
1642 3083 2.363788 TCGAAAAGACCGGACTGATG 57.636 50.000 9.46 0.00 0.00 3.07
1659 3100 1.988467 CGACCGATCAATCATCCATCG 59.012 52.381 0.00 0.00 39.31 3.84
1704 3150 4.636206 AGAAAGGAACGGATGCAGTTTATC 59.364 41.667 0.00 0.00 31.14 1.75
1705 3151 4.589908 AGAAAGGAACGGATGCAGTTTAT 58.410 39.130 0.00 0.00 31.14 1.40
1706 3152 4.015872 AGAAAGGAACGGATGCAGTTTA 57.984 40.909 0.00 0.00 31.14 2.01
1708 3154 2.568623 AGAAAGGAACGGATGCAGTT 57.431 45.000 0.00 0.00 34.07 3.16
1730 3176 0.392336 GACATGGTTTGCTGCCCAAA 59.608 50.000 0.00 0.00 40.97 3.28
1731 3177 0.469705 AGACATGGTTTGCTGCCCAA 60.470 50.000 0.00 0.00 33.66 4.12
1732 3178 0.469705 AAGACATGGTTTGCTGCCCA 60.470 50.000 0.00 0.00 34.66 5.36
1733 3179 0.244721 GAAGACATGGTTTGCTGCCC 59.755 55.000 0.00 0.00 0.00 5.36
1734 3180 0.244721 GGAAGACATGGTTTGCTGCC 59.755 55.000 0.00 0.00 0.00 4.85
1736 3182 1.955778 TGTGGAAGACATGGTTTGCTG 59.044 47.619 0.00 0.00 0.00 4.41
1745 3191 2.372264 GATGCACCATGTGGAAGACAT 58.628 47.619 5.96 3.69 46.98 3.06
1746 3192 1.614051 GGATGCACCATGTGGAAGACA 60.614 52.381 5.96 0.00 37.44 3.41
1747 3193 1.098050 GGATGCACCATGTGGAAGAC 58.902 55.000 5.96 0.00 37.44 3.01
1748 3194 0.392863 CGGATGCACCATGTGGAAGA 60.393 55.000 5.96 0.00 37.44 2.87
1749 3195 1.996786 GCGGATGCACCATGTGGAAG 61.997 60.000 5.96 0.00 37.44 3.46
1750 3196 2.045708 GCGGATGCACCATGTGGAA 61.046 57.895 5.96 0.00 37.44 3.53
1751 3197 2.438254 GCGGATGCACCATGTGGA 60.438 61.111 5.96 0.00 42.15 4.02
1752 3198 3.520862 GGCGGATGCACCATGTGG 61.521 66.667 0.00 0.00 45.35 4.17
1753 3199 3.520862 GGGCGGATGCACCATGTG 61.521 66.667 0.00 0.00 45.35 3.21
1760 3206 0.539438 ACAAAGAAAGGGCGGATGCA 60.539 50.000 0.00 0.00 45.35 3.96
1761 3207 0.603065 AACAAAGAAAGGGCGGATGC 59.397 50.000 0.00 0.00 41.71 3.91
1762 3208 2.352715 GGAAACAAAGAAAGGGCGGATG 60.353 50.000 0.00 0.00 0.00 3.51
1763 3209 1.893137 GGAAACAAAGAAAGGGCGGAT 59.107 47.619 0.00 0.00 0.00 4.18
1764 3210 1.133606 AGGAAACAAAGAAAGGGCGGA 60.134 47.619 0.00 0.00 0.00 5.54
1765 3211 1.328279 AGGAAACAAAGAAAGGGCGG 58.672 50.000 0.00 0.00 0.00 6.13
1766 3212 2.488153 CCTAGGAAACAAAGAAAGGGCG 59.512 50.000 1.05 0.00 0.00 6.13
1767 3213 3.763057 TCCTAGGAAACAAAGAAAGGGC 58.237 45.455 9.71 0.00 0.00 5.19
1768 3214 6.010219 TCATTCCTAGGAAACAAAGAAAGGG 58.990 40.000 27.65 6.36 37.69 3.95
1769 3215 6.151817 CCTCATTCCTAGGAAACAAAGAAAGG 59.848 42.308 27.65 18.58 37.69 3.11
1770 3216 6.151817 CCCTCATTCCTAGGAAACAAAGAAAG 59.848 42.308 27.65 14.50 37.69 2.62
1771 3217 6.010219 CCCTCATTCCTAGGAAACAAAGAAA 58.990 40.000 27.65 2.07 37.69 2.52
1772 3218 5.516591 CCCCTCATTCCTAGGAAACAAAGAA 60.517 44.000 27.65 2.87 37.69 2.52
1773 3219 4.018415 CCCCTCATTCCTAGGAAACAAAGA 60.018 45.833 27.65 17.69 37.69 2.52
1774 3220 4.273318 CCCCTCATTCCTAGGAAACAAAG 58.727 47.826 27.65 19.63 37.69 2.77
1775 3221 3.563479 GCCCCTCATTCCTAGGAAACAAA 60.563 47.826 27.65 12.27 37.69 2.83
1776 3222 2.025321 GCCCCTCATTCCTAGGAAACAA 60.025 50.000 27.65 14.60 37.69 2.83
1777 3223 1.564348 GCCCCTCATTCCTAGGAAACA 59.436 52.381 27.65 15.68 37.69 2.83
1778 3224 1.475213 CGCCCCTCATTCCTAGGAAAC 60.475 57.143 27.65 10.36 37.69 2.78
1779 3225 0.837272 CGCCCCTCATTCCTAGGAAA 59.163 55.000 27.65 11.84 37.69 3.13
1780 3226 0.326238 ACGCCCCTCATTCCTAGGAA 60.326 55.000 26.24 26.24 36.08 3.36
1781 3227 1.048724 CACGCCCCTCATTCCTAGGA 61.049 60.000 7.62 7.62 36.08 2.94
1782 3228 1.338136 ACACGCCCCTCATTCCTAGG 61.338 60.000 0.82 0.82 0.00 3.02
1783 3229 0.179073 CACACGCCCCTCATTCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
1784 3230 1.904771 CACACGCCCCTCATTCCTA 59.095 57.895 0.00 0.00 0.00 2.94
1785 3231 2.671070 CACACGCCCCTCATTCCT 59.329 61.111 0.00 0.00 0.00 3.36
1786 3232 3.134127 GCACACGCCCCTCATTCC 61.134 66.667 0.00 0.00 0.00 3.01
1812 3258 2.111878 CATGATCAGCCCGGTCCC 59.888 66.667 0.00 0.00 0.00 4.46
1817 3263 1.378882 CCCAACACATGATCAGCCCG 61.379 60.000 0.00 0.00 0.00 6.13
1818 3264 0.034186 TCCCAACACATGATCAGCCC 60.034 55.000 0.00 0.00 0.00 5.19
1821 3267 2.238144 AGGACTCCCAACACATGATCAG 59.762 50.000 0.00 0.00 33.88 2.90
1822 3268 2.269023 AGGACTCCCAACACATGATCA 58.731 47.619 0.00 0.00 33.88 2.92
1823 3269 3.012518 CAAGGACTCCCAACACATGATC 58.987 50.000 0.00 0.00 33.88 2.92
1824 3270 2.881403 GCAAGGACTCCCAACACATGAT 60.881 50.000 0.00 0.00 33.88 2.45
1826 3272 0.883833 GCAAGGACTCCCAACACATG 59.116 55.000 0.00 0.00 33.88 3.21
1827 3273 0.251341 GGCAAGGACTCCCAACACAT 60.251 55.000 0.00 0.00 33.88 3.21
1828 3274 1.150536 GGCAAGGACTCCCAACACA 59.849 57.895 0.00 0.00 33.88 3.72
1829 3275 0.178990 AAGGCAAGGACTCCCAACAC 60.179 55.000 0.00 0.00 33.88 3.32
1838 3291 0.469144 TTGGGGAACAAGGCAAGGAC 60.469 55.000 0.00 0.00 33.18 3.85
1875 3328 9.410556 CGACTTTTCATTGATTAACCAAATTCT 57.589 29.630 0.00 0.00 0.00 2.40
1889 3343 3.090952 TGGCAAACCGACTTTTCATTG 57.909 42.857 0.00 0.00 39.70 2.82
1890 3344 3.810310 TTGGCAAACCGACTTTTCATT 57.190 38.095 0.00 0.00 39.70 2.57
1892 3346 3.452474 CATTTGGCAAACCGACTTTTCA 58.548 40.909 16.00 0.00 39.70 2.69
1893 3347 2.799978 CCATTTGGCAAACCGACTTTTC 59.200 45.455 16.00 0.00 39.70 2.29
1894 3348 2.832563 CCATTTGGCAAACCGACTTTT 58.167 42.857 16.00 0.00 39.70 2.27
1895 3349 2.524569 CCATTTGGCAAACCGACTTT 57.475 45.000 16.00 0.00 39.70 2.66
1907 3361 2.120274 AGGTGGGTGGCCATTTGG 59.880 61.111 9.72 0.00 38.53 3.28
1908 3362 0.615544 ATCAGGTGGGTGGCCATTTG 60.616 55.000 9.72 1.60 0.00 2.32
1909 3363 1.006813 TATCAGGTGGGTGGCCATTT 58.993 50.000 9.72 0.00 0.00 2.32
1910 3364 1.133388 CATATCAGGTGGGTGGCCATT 60.133 52.381 9.72 0.00 0.00 3.16
1911 3365 0.479815 CATATCAGGTGGGTGGCCAT 59.520 55.000 9.72 0.00 0.00 4.40
1912 3366 0.623031 TCATATCAGGTGGGTGGCCA 60.623 55.000 0.00 0.00 0.00 5.36
1913 3367 0.773644 ATCATATCAGGTGGGTGGCC 59.226 55.000 0.00 0.00 0.00 5.36
1914 3368 1.421268 TGATCATATCAGGTGGGTGGC 59.579 52.381 0.00 0.00 33.59 5.01
1915 3369 3.586174 AGATGATCATATCAGGTGGGTGG 59.414 47.826 8.54 0.00 43.53 4.61
1916 3370 4.285260 TGAGATGATCATATCAGGTGGGTG 59.715 45.833 25.37 0.00 43.53 4.61
1917 3371 4.285517 GTGAGATGATCATATCAGGTGGGT 59.714 45.833 28.69 0.00 43.53 4.51
1918 3372 4.620097 CGTGAGATGATCATATCAGGTGGG 60.620 50.000 30.90 17.17 43.53 4.61
1919 3373 4.219288 TCGTGAGATGATCATATCAGGTGG 59.781 45.833 34.39 23.24 42.29 4.61
1920 3374 5.382618 TCGTGAGATGATCATATCAGGTG 57.617 43.478 34.39 25.39 42.29 4.00
1936 3390 7.148787 GGAATAAATCCGCTTAGTTATCGTGAG 60.149 40.741 0.00 0.00 38.79 3.51
1937 3391 6.643770 GGAATAAATCCGCTTAGTTATCGTGA 59.356 38.462 0.00 0.00 38.79 4.35
1938 3392 6.818416 GGAATAAATCCGCTTAGTTATCGTG 58.182 40.000 0.00 0.00 38.79 4.35
1960 3414 9.681062 ACCGAAAATTCTGAAATAAATCTAGGA 57.319 29.630 0.00 0.00 0.00 2.94
1961 3415 9.722056 CACCGAAAATTCTGAAATAAATCTAGG 57.278 33.333 0.00 0.00 0.00 3.02
1964 3418 9.793252 CATCACCGAAAATTCTGAAATAAATCT 57.207 29.630 0.00 0.00 0.00 2.40
1965 3419 8.534778 GCATCACCGAAAATTCTGAAATAAATC 58.465 33.333 0.00 0.00 0.00 2.17
1966 3420 7.220683 CGCATCACCGAAAATTCTGAAATAAAT 59.779 33.333 0.00 0.00 0.00 1.40
1967 3421 6.526325 CGCATCACCGAAAATTCTGAAATAAA 59.474 34.615 0.00 0.00 0.00 1.40
1968 3422 6.027131 CGCATCACCGAAAATTCTGAAATAA 58.973 36.000 0.00 0.00 0.00 1.40
1969 3423 5.568482 CGCATCACCGAAAATTCTGAAATA 58.432 37.500 0.00 0.00 0.00 1.40
1970 3424 4.414852 CGCATCACCGAAAATTCTGAAAT 58.585 39.130 0.00 0.00 0.00 2.17
1971 3425 3.820689 CGCATCACCGAAAATTCTGAAA 58.179 40.909 0.00 0.00 0.00 2.69
1972 3426 2.414029 GCGCATCACCGAAAATTCTGAA 60.414 45.455 0.30 0.00 0.00 3.02
1973 3427 1.130373 GCGCATCACCGAAAATTCTGA 59.870 47.619 0.30 0.00 0.00 3.27
1974 3428 1.538276 GCGCATCACCGAAAATTCTG 58.462 50.000 0.30 0.00 0.00 3.02
1975 3429 0.096976 CGCGCATCACCGAAAATTCT 59.903 50.000 8.75 0.00 0.00 2.40
1976 3430 0.179200 ACGCGCATCACCGAAAATTC 60.179 50.000 5.73 0.00 0.00 2.17
1977 3431 0.239879 AACGCGCATCACCGAAAATT 59.760 45.000 5.73 0.00 0.00 1.82
1978 3432 0.179200 GAACGCGCATCACCGAAAAT 60.179 50.000 5.73 0.00 0.00 1.82
1979 3433 1.205568 GAACGCGCATCACCGAAAA 59.794 52.632 5.73 0.00 0.00 2.29
1980 3434 1.896339 CTGAACGCGCATCACCGAAA 61.896 55.000 5.73 0.00 0.00 3.46
1981 3435 2.356433 TGAACGCGCATCACCGAA 60.356 55.556 5.73 0.00 0.00 4.30
1982 3436 2.809174 CTGAACGCGCATCACCGA 60.809 61.111 5.73 0.00 0.00 4.69
1983 3437 3.112075 ACTGAACGCGCATCACCG 61.112 61.111 5.73 3.07 0.00 4.94
1984 3438 2.476051 CACTGAACGCGCATCACC 59.524 61.111 5.73 0.00 0.00 4.02
1985 3439 2.202222 GCACTGAACGCGCATCAC 60.202 61.111 5.73 0.00 0.00 3.06
1986 3440 3.776849 CGCACTGAACGCGCATCA 61.777 61.111 5.73 10.82 46.98 3.07
1992 3446 2.708059 GACGTCTCGCACTGAACGC 61.708 63.158 8.70 0.00 35.74 4.84
1993 3447 2.081212 GGACGTCTCGCACTGAACG 61.081 63.158 16.46 0.00 37.23 3.95
1994 3448 1.733399 GGGACGTCTCGCACTGAAC 60.733 63.158 16.46 0.00 0.00 3.18
1995 3449 2.649034 GGGACGTCTCGCACTGAA 59.351 61.111 16.46 0.00 0.00 3.02
2013 3467 0.669625 AAAGGCGCCTCGTAGTCAAC 60.670 55.000 32.93 0.00 0.00 3.18
2014 3468 0.669318 CAAAGGCGCCTCGTAGTCAA 60.669 55.000 32.93 0.00 0.00 3.18
2015 3469 1.080093 CAAAGGCGCCTCGTAGTCA 60.080 57.895 32.93 0.00 0.00 3.41
2016 3470 0.179108 ATCAAAGGCGCCTCGTAGTC 60.179 55.000 32.93 0.00 0.00 2.59
2017 3471 0.460284 CATCAAAGGCGCCTCGTAGT 60.460 55.000 32.93 11.43 0.00 2.73
2018 3472 0.179111 TCATCAAAGGCGCCTCGTAG 60.179 55.000 32.93 19.48 0.00 3.51
2019 3473 0.459585 GTCATCAAAGGCGCCTCGTA 60.460 55.000 32.93 18.36 0.00 3.43
2020 3474 1.741770 GTCATCAAAGGCGCCTCGT 60.742 57.895 32.93 18.88 0.00 4.18
2021 3475 1.021390 AAGTCATCAAAGGCGCCTCG 61.021 55.000 32.93 24.15 0.00 4.63
2022 3476 0.729690 GAAGTCATCAAAGGCGCCTC 59.270 55.000 32.93 15.80 0.00 4.70
2023 3477 1.021390 CGAAGTCATCAAAGGCGCCT 61.021 55.000 27.08 27.08 0.00 5.52
2024 3478 1.298859 ACGAAGTCATCAAAGGCGCC 61.299 55.000 21.89 21.89 29.74 6.53
2025 3479 2.162716 ACGAAGTCATCAAAGGCGC 58.837 52.632 0.00 0.00 29.74 6.53
2036 3490 6.900568 AATCATCTTGAGATTGACGAAGTC 57.099 37.500 0.00 0.00 45.49 3.01
2037 3491 8.420222 AGATAATCATCTTGAGATTGACGAAGT 58.580 33.333 0.00 0.00 41.06 3.01
2038 3492 8.701540 CAGATAATCATCTTGAGATTGACGAAG 58.298 37.037 0.00 0.00 39.62 3.79
2039 3493 7.170489 GCAGATAATCATCTTGAGATTGACGAA 59.830 37.037 0.00 0.00 39.62 3.85
2040 3494 6.644181 GCAGATAATCATCTTGAGATTGACGA 59.356 38.462 0.00 0.00 39.62 4.20
2041 3495 6.399775 CGCAGATAATCATCTTGAGATTGACG 60.400 42.308 0.00 0.00 39.62 4.35
2042 3496 6.423302 ACGCAGATAATCATCTTGAGATTGAC 59.577 38.462 0.00 0.00 39.62 3.18
2043 3497 6.423001 CACGCAGATAATCATCTTGAGATTGA 59.577 38.462 0.00 0.00 39.62 2.57
2044 3498 6.202379 ACACGCAGATAATCATCTTGAGATTG 59.798 38.462 0.00 0.00 39.62 2.67
2045 3499 6.202379 CACACGCAGATAATCATCTTGAGATT 59.798 38.462 0.00 0.00 39.62 2.40
2046 3500 5.695363 CACACGCAGATAATCATCTTGAGAT 59.305 40.000 0.00 0.00 39.62 2.75
2047 3501 5.045872 CACACGCAGATAATCATCTTGAGA 58.954 41.667 0.00 0.00 39.62 3.27
2048 3502 4.807834 ACACACGCAGATAATCATCTTGAG 59.192 41.667 0.00 0.00 39.62 3.02
2049 3503 4.758688 ACACACGCAGATAATCATCTTGA 58.241 39.130 0.00 0.00 39.62 3.02
2050 3504 6.201615 ACATACACACGCAGATAATCATCTTG 59.798 38.462 0.00 0.00 39.62 3.02
2051 3505 6.283694 ACATACACACGCAGATAATCATCTT 58.716 36.000 0.00 0.00 39.62 2.40
2052 3506 5.847304 ACATACACACGCAGATAATCATCT 58.153 37.500 0.00 0.00 42.52 2.90
2053 3507 6.200854 TGAACATACACACGCAGATAATCATC 59.799 38.462 0.00 0.00 0.00 2.92
2054 3508 6.048509 TGAACATACACACGCAGATAATCAT 58.951 36.000 0.00 0.00 0.00 2.45
2055 3509 5.415221 TGAACATACACACGCAGATAATCA 58.585 37.500 0.00 0.00 0.00 2.57
2056 3510 5.966636 TGAACATACACACGCAGATAATC 57.033 39.130 0.00 0.00 0.00 1.75
2057 3511 7.433680 TCTATGAACATACACACGCAGATAAT 58.566 34.615 0.00 0.00 0.00 1.28
2058 3512 6.801575 TCTATGAACATACACACGCAGATAA 58.198 36.000 0.00 0.00 0.00 1.75
2059 3513 6.262273 TCTCTATGAACATACACACGCAGATA 59.738 38.462 0.00 0.00 0.00 1.98
2060 3514 5.067805 TCTCTATGAACATACACACGCAGAT 59.932 40.000 0.00 0.00 0.00 2.90
2061 3515 4.398044 TCTCTATGAACATACACACGCAGA 59.602 41.667 0.00 0.00 0.00 4.26
2062 3516 4.672409 TCTCTATGAACATACACACGCAG 58.328 43.478 0.00 0.00 0.00 5.18
2063 3517 4.712122 TCTCTATGAACATACACACGCA 57.288 40.909 0.00 0.00 0.00 5.24
2064 3518 5.281727 TCATCTCTATGAACATACACACGC 58.718 41.667 0.00 0.00 39.20 5.34
2065 3519 6.416161 CACTCATCTCTATGAACATACACACG 59.584 42.308 0.00 0.00 41.57 4.49
2066 3520 7.261325 ACACTCATCTCTATGAACATACACAC 58.739 38.462 0.00 0.00 41.57 3.82
2067 3521 7.410120 ACACTCATCTCTATGAACATACACA 57.590 36.000 0.00 0.00 41.57 3.72
2068 3522 9.404348 CATACACTCATCTCTATGAACATACAC 57.596 37.037 0.00 0.00 41.57 2.90
2069 3523 8.084684 GCATACACTCATCTCTATGAACATACA 58.915 37.037 0.00 0.00 41.57 2.29
2070 3524 7.272299 CGCATACACTCATCTCTATGAACATAC 59.728 40.741 0.00 0.00 41.57 2.39
2071 3525 7.308435 CGCATACACTCATCTCTATGAACATA 58.692 38.462 0.00 0.00 41.57 2.29
2072 3526 6.155136 CGCATACACTCATCTCTATGAACAT 58.845 40.000 0.00 0.00 41.57 2.71
2073 3527 5.523369 CGCATACACTCATCTCTATGAACA 58.477 41.667 0.00 0.00 41.57 3.18
2074 3528 4.384247 GCGCATACACTCATCTCTATGAAC 59.616 45.833 0.30 0.00 41.57 3.18
2075 3529 4.550422 GCGCATACACTCATCTCTATGAA 58.450 43.478 0.30 0.00 41.57 2.57
2076 3530 3.365364 CGCGCATACACTCATCTCTATGA 60.365 47.826 8.75 0.00 39.87 2.15
2077 3531 2.913590 CGCGCATACACTCATCTCTATG 59.086 50.000 8.75 0.00 0.00 2.23
2078 3532 2.095008 CCGCGCATACACTCATCTCTAT 60.095 50.000 8.75 0.00 0.00 1.98
2079 3533 1.266989 CCGCGCATACACTCATCTCTA 59.733 52.381 8.75 0.00 0.00 2.43
2080 3534 0.031314 CCGCGCATACACTCATCTCT 59.969 55.000 8.75 0.00 0.00 3.10
2081 3535 0.030773 TCCGCGCATACACTCATCTC 59.969 55.000 8.75 0.00 0.00 2.75
2082 3536 0.676184 ATCCGCGCATACACTCATCT 59.324 50.000 8.75 0.00 0.00 2.90
2083 3537 2.347697 TATCCGCGCATACACTCATC 57.652 50.000 8.75 0.00 0.00 2.92
2084 3538 4.097892 TCATATATCCGCGCATACACTCAT 59.902 41.667 8.75 0.00 0.00 2.90
2085 3539 3.442273 TCATATATCCGCGCATACACTCA 59.558 43.478 8.75 0.00 0.00 3.41
2086 3540 4.028852 TCATATATCCGCGCATACACTC 57.971 45.455 8.75 0.00 0.00 3.51
2087 3541 3.735208 GCTCATATATCCGCGCATACACT 60.735 47.826 8.75 0.00 0.00 3.55
2088 3542 2.535984 GCTCATATATCCGCGCATACAC 59.464 50.000 8.75 0.00 0.00 2.90
2089 3543 2.794631 CGCTCATATATCCGCGCATACA 60.795 50.000 8.75 0.00 39.11 2.29
2090 3544 1.781429 CGCTCATATATCCGCGCATAC 59.219 52.381 8.75 0.00 39.11 2.39
2091 3545 2.119671 CGCTCATATATCCGCGCATA 57.880 50.000 8.75 0.00 39.11 3.14
2092 3546 2.963499 CGCTCATATATCCGCGCAT 58.037 52.632 8.75 0.00 39.11 4.73
2093 3547 4.476361 CGCTCATATATCCGCGCA 57.524 55.556 8.75 0.00 39.11 6.09
2096 3550 1.781429 CGCATACGCTCATATATCCGC 59.219 52.381 0.00 0.00 35.30 5.54
2097 3551 3.036633 GACGCATACGCTCATATATCCG 58.963 50.000 0.00 0.00 45.53 4.18
2098 3552 4.294416 AGACGCATACGCTCATATATCC 57.706 45.455 0.00 0.00 45.53 2.59
2099 3553 5.340932 GCATAGACGCATACGCTCATATATC 59.659 44.000 0.00 0.00 45.53 1.63
2100 3554 5.009110 AGCATAGACGCATACGCTCATATAT 59.991 40.000 0.00 0.00 45.53 0.86
2101 3555 4.335594 AGCATAGACGCATACGCTCATATA 59.664 41.667 0.00 0.00 45.53 0.86
2102 3556 3.129462 AGCATAGACGCATACGCTCATAT 59.871 43.478 0.00 0.00 45.53 1.78
2103 3557 2.488153 AGCATAGACGCATACGCTCATA 59.512 45.455 0.00 0.00 45.53 2.15
2104 3558 1.270826 AGCATAGACGCATACGCTCAT 59.729 47.619 0.00 0.00 45.53 2.90
2105 3559 0.668535 AGCATAGACGCATACGCTCA 59.331 50.000 0.00 0.00 45.53 4.26
2106 3560 1.056103 CAGCATAGACGCATACGCTC 58.944 55.000 0.00 0.00 45.53 5.03
2107 3561 0.385751 ACAGCATAGACGCATACGCT 59.614 50.000 0.00 0.00 45.53 5.07
2108 3562 0.504384 CACAGCATAGACGCATACGC 59.496 55.000 0.00 0.00 45.53 4.42
2110 3564 3.186909 TGAACACAGCATAGACGCATAC 58.813 45.455 0.00 0.00 0.00 2.39
2111 3565 3.518634 TGAACACAGCATAGACGCATA 57.481 42.857 0.00 0.00 0.00 3.14
2112 3566 2.385013 TGAACACAGCATAGACGCAT 57.615 45.000 0.00 0.00 0.00 4.73
2113 3567 2.162319 TTGAACACAGCATAGACGCA 57.838 45.000 0.00 0.00 0.00 5.24
2114 3568 3.536158 TTTTGAACACAGCATAGACGC 57.464 42.857 0.00 0.00 0.00 5.19
2135 3589 2.939460 AAACACGCAGCTCAGTTTTT 57.061 40.000 0.00 0.00 30.64 1.94
2136 3590 2.939460 AAAACACGCAGCTCAGTTTT 57.061 40.000 11.45 11.45 38.82 2.43
2137 3591 2.290641 CCTAAAACACGCAGCTCAGTTT 59.709 45.455 0.00 0.00 35.87 2.66
2138 3592 1.873591 CCTAAAACACGCAGCTCAGTT 59.126 47.619 0.00 0.00 0.00 3.16
2139 3593 1.512926 CCTAAAACACGCAGCTCAGT 58.487 50.000 0.00 0.00 0.00 3.41
2140 3594 0.798776 CCCTAAAACACGCAGCTCAG 59.201 55.000 0.00 0.00 0.00 3.35
2141 3595 0.394938 TCCCTAAAACACGCAGCTCA 59.605 50.000 0.00 0.00 0.00 4.26
2142 3596 0.796927 GTCCCTAAAACACGCAGCTC 59.203 55.000 0.00 0.00 0.00 4.09
2143 3597 0.107831 TGTCCCTAAAACACGCAGCT 59.892 50.000 0.00 0.00 0.00 4.24
2144 3598 0.517316 CTGTCCCTAAAACACGCAGC 59.483 55.000 0.00 0.00 0.00 5.25
2145 3599 1.878953 ACTGTCCCTAAAACACGCAG 58.121 50.000 0.00 0.00 0.00 5.18
2146 3600 2.335316 AACTGTCCCTAAAACACGCA 57.665 45.000 0.00 0.00 0.00 5.24
2147 3601 3.703286 AAAACTGTCCCTAAAACACGC 57.297 42.857 0.00 0.00 0.00 5.34
2166 3620 1.074727 TCTGGGAGAATCGGCCAAAAA 59.925 47.619 2.24 0.00 34.37 1.94
2167 3621 0.695924 TCTGGGAGAATCGGCCAAAA 59.304 50.000 2.24 0.00 34.37 2.44
2168 3622 0.695924 TTCTGGGAGAATCGGCCAAA 59.304 50.000 2.24 0.00 34.37 3.28
2169 3623 0.918983 ATTCTGGGAGAATCGGCCAA 59.081 50.000 2.24 0.00 40.75 4.52
2170 3624 0.918983 AATTCTGGGAGAATCGGCCA 59.081 50.000 2.24 0.00 43.67 5.36
2171 3625 1.312815 CAATTCTGGGAGAATCGGCC 58.687 55.000 0.00 0.00 43.67 6.13
2172 3626 0.665298 GCAATTCTGGGAGAATCGGC 59.335 55.000 0.00 3.89 43.67 5.54
2173 3627 1.312815 GGCAATTCTGGGAGAATCGG 58.687 55.000 0.00 0.00 43.67 4.18
2174 3628 1.312815 GGGCAATTCTGGGAGAATCG 58.687 55.000 0.00 0.00 43.67 3.34
2175 3629 1.697284 GGGGCAATTCTGGGAGAATC 58.303 55.000 0.00 0.00 43.67 2.52
2176 3630 0.262876 GGGGGCAATTCTGGGAGAAT 59.737 55.000 0.00 0.00 46.22 2.40
2177 3631 1.697297 GGGGGCAATTCTGGGAGAA 59.303 57.895 0.00 0.00 38.78 2.87
2178 3632 3.426917 GGGGGCAATTCTGGGAGA 58.573 61.111 0.00 0.00 0.00 3.71
2192 3646 2.356667 GCAGAAGTTGGGAGGGGG 59.643 66.667 0.00 0.00 0.00 5.40
2193 3647 2.356667 GGCAGAAGTTGGGAGGGG 59.643 66.667 0.00 0.00 0.00 4.79
2194 3648 1.001641 CTGGCAGAAGTTGGGAGGG 60.002 63.158 9.42 0.00 0.00 4.30
2195 3649 0.401738 TTCTGGCAGAAGTTGGGAGG 59.598 55.000 25.38 0.00 29.50 4.30
2196 3650 2.503895 ATTCTGGCAGAAGTTGGGAG 57.496 50.000 31.17 0.00 37.69 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.