>input_sequence_86716
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--------ATGGCAGGGTTCGGCAGCCTGGCGTCCAAGACGAAGAATGTGGTGGTGGCGGGCGGGCTGACGGGGTTCGTC
TTTGGGGTGTACTACTACACCATGTGGGCGGTGGGCAGCACCGACGAGCTGCAGGTCACTATCGACAAGTTTGAGGACCT
GAAGAAGAAGGAGGAGGCAACCTTCGCAGCC---------GCC------GCAAGCGCCTCCACCCCGGGATCATCATAA-
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>chr1B_1_TraesCS1B01G414600
ACAGAGCACAGACTAGCAGCCAGCCATGGAAGAACTCCATGTAGTACTATTATGACCATATGTACACACCAAATCTTGTG
AAAACCTCTGGATGGTACTAGT------ACAACTTAGTTTCAGTACGTCCGCTGTATCAGAATTCCAGTAAGCACTGCCA
AGATAAATAAATTGCCTTCTGTGTCCTTCAAACACTTGTGCAGAGCGTTGTATATAGG-----TTTTTTCTTTTTCAAGC
TACATGTGCTGCATTGAAAGGGAGCTCCCTTTTCTGCACTCAGCTCAGGCACAA-----------TGGAGTTAAGCAGGG
TCTACACCGTTGCGTCTGTTTCCTA-AAGAA---ATTACCCAAGATGTCTCACACATGTCTGTAGAG-----------AA
CAGC-GTCTTCTTGTTTCCAATGGTTTTAGCTCCAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTGCATCATTGT
CACTCCCCGGCAAGTCCCAGC---ACCAGGTAGACAGGCCTTGT----GAGAGAGACAGAGACGATTGCTCAGGCCCGAT
GTTCTGGTGCTTGCTAGAGTGCTTTGTATGGCTGAAGGATTCCTCAGCAGGCCGTGTTGTGATGTACGAACAGTATTTGG
TT--GATGAGGAGGCTACTCGCCAGTAACCCCTA-TTTTCCTTCTTGCTGTGACAGAAATTGTCAATTGCCGCAAAGCTA
CTGAATGCCAGACTGTATAATCACCAGAGGGGAGT--CAGATTGTT-TATAACACAAATCTCTACATCTTCAAACTGTCC
CCGTAATGCCCATTTTGAAAGTGTACAGACTGTATTTTGAAGCGGTGCCCACATGTAGGAGTAAC-ATAATTTCACATCC
GTGTCCTGTGTTTGAATTTGATACCGGCATGGAACCAGTCACTTTGTCTCTCAAGTT-GTCAGAGGAACATCTTTTATGT
TTCGCACCTTGGATCGGTAACTTCAA------------------------------------------------------
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-------------GTAACATTTTCC-----ACATTTCTGTCCTGCAGCAGCAGCAGCAGCAGCAGCCTA---GTCGTCAT
CGTCGCCGATGGCAGGGTTCGGCAGCCTGGCGTCCAAGACGAAGAATGTGGTGGTGGCGGGCGGGCTGACGGGGTTCGTC
TTTGGGGTGTACTACTACACCATGTGGGCGGTGGGCAGCACCGACGAGCTGCAGGTCACTATCGACAAGTTTGAGGACCT
GAAGAAGAAGGAGGAGGCAACCTTCGCAGCC---------GCC------GCAAGCGCCTCCACCCCGGGATCATCATAAA
CAAATG--CGCCCTTAACTTTGAAACTAGCTGCTGCTGCCTCTCAACCTGCCCGGGACAATGGGTTTGGTTTGTA-TTGA
TAATAATGGGTGCTTTTAGTTAGATGGAGCGTTTTCATTCCTGGCATGGATGGAGTTTGGAGTTGATGATGCTTTTGTTT
GTGTGAATGG--AATGTTAGCCGCTGTGTCTGGAAGTT-ATGATA-----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------TATGATACTGCCTCCACTTCAAAATACAGTCTCCGC
TTCAAAATATAAGGTGTAATGTTTCTGTCCCCCTCAGAAATAAATCAGGCCTTTTTTTCGTGGGAAATAAATCAGGCTTT
TCGATGTTTGACCT---TTAGTAGTTTTGCAACGGATGGAGTAGTACCTTTTGGAGGCAGGGTCCTCTGGTTTGTCGTCG
CTGTGTTGAAATATGTTGCGG---------TCCCTCTCTCTTCATCAGTCCGGTCTTTTCGATGGATGATTG----ATC-
GGTCGAAACATGAATGAATTCATTGTAATGATAAACTGCATCCGTTCCTTTCTTTTTTGGGCAGCAAACCATGTCTTCCA
CATGGTGCATCCGCCCTTTCTTTGTTTCCTAGGAATGAGGGGCGTGTGCCGGCACACGGGACCGGGCTGATCATG-----
--TGTTGGGAGTCCTTGCCTTGTTCCCCAAGAAGGTCCGGCAATGAAA-GAATTTGGTTAATCAATGAAAAGTCGGTTTG
CCAAATGGCCACCCACCTGATATGATCATCTCACGATAACTAAGCGGATTTATTCCTAGATTTATTTCAGAATTTTCGGT
GATGCGCGTTCAGTGCGAGACGTCCCGTTGACTACGAGGCGCCTTTGATGACTTCGTCAATCTCAAGATGATTATCTGCG
TGTGTATGTTCATAGAGATGAGTGTATGCGCGGATATATGAGCGTATGCGTCTATGCTGTGTTCAAAAAAAAACTGAGCT
GCGTGTTTTAGGGACAGTTTTTTTGGCCGATTCTCCCAGAATTGCCCCCCTCCCAACTTCTGCCAGAAT
>chr1B_1
ACAGAGCGCAGACACTAAG-CAGCCACGGAAGAATTCCATGTGCTATTATGAC-----TATATATACACCAAATCTTGC-
--AACCTCTGGAT------AGT------GCAGCTTAGTTTTAGTACGTCGACTGCATCAGACTTCCAGTAAGCACTGCCA
CGATAAATGAATTGTGTTGTGTGTCTTTGAAATACTTGTGCAGAGTGATGCATATAGG-----TTTTTCG-GTTTCAAGC
TACATGTGTTGCATTGAAAGAGAGCTATCTTTCCTTCACGCAGCTCAGGCAAAACAAATAAACAACGAAGTTAAGCAGGG
TCTACACTGTTGCATTTGTTTCTTC-AA-AA---ATTACATGAGATATCTCACACATATCTGTAGAGAATAGTTTTGCAA
TAGCAGTCTTCTTGTTTCCAACCGTTTTAGCTTGAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTACATCATTGT
CACTCCCTAGCAAGTCCCAGC---ACCGGGTAGACAGGCCTTTT----GAGAGAGACAGAGGTGATTGTTCAGGTCTGAT
GTTCTAGTATTTGCTAGAGTGCTTTGCATGGCCAAAGGATGCCTCAGTAGGCCGTCCTGTGATGTACAGGCAGTATCTGG
TTCAGATGGGGAAGCTACTC-CCGGTAACCCCTATTTTTCCTTCTTGTTGTGGCAGAAATCATCAATAGCCGCAAAGCTA
CTGAATGCCAGACTGTATAAGCACCAGAGGGGACT--CAGATTGTGGTATAACACAAATCTCTACATCTTCAAACTATCC
CCGTGATGCCCAGTTCAAAATCGTACATACCGTATTTTCAAGTCGTGCCCACATATAG---TAACAATATTTTCACATAT
GTGCCCTGCG-TTGAATTTGATACTGGCAA--AACCAGTCAC-ATG--TCTCGAGTT-GTCAGAGGACCG-TTTTCATGT
TCCGCATCTTGGATTGGTAACTACATGTA---------------------------------------------------
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--------------TAACATTTTCC-----ACATTTTTGTCCTGCAGCAGCAGCA-------------------------
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---------------------------------------------------------------------
>chrUn_21
--------------------CAGCCACGGAAGAATTCCATGTGCTATTATGAC-----TATATATACACCAAATCTTGT-
--AACCTCTGGAT------AGT------GCAGCTTAGTTTTAGTACGTCGGCTGCATCAGACTTCCAGTAAGCACTGCCA
CGATAAATGAATTGCGTTGTGTGTCTTTGAAGTACTTGTGCAGAGCGATGCATATAGG-----TTTTTCC-GTTTCAAGC
TACATGTGTTGCATTGAAAGGGAGCTCTCTTTCCTGCACGCAGCTCAGGCAAAACAAATAAACAACGGAGTTAAGCAGGG
TCTACACTGTTGCGTTTGTTTCTTAAAA-AA---ATTACCTGAGATATCTCACACATATCTGTAGAGAATAGTTTTGCAA
CAGCAGTCTTCTTGTTTCCAACGGTTTTAGCTTGAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTACATCATTGT
CACTCCCTGGCAAGTCCCAGC---ACCAGGTAGACATGCCTTCT----GAGAGAGACAGAAGTGATTGTTCAGG-CCGAT
GTTCTAGTGCTTGCTAGAGTGCTTTGTATGGCCAAAGGATGCCTCAGTAGGCCGTCTTGTGATGTACAGGCAGTATCTGG
TTCAGATGGGGAAGCTACTC-CCGGTAACCCCTATTTTTCCTTCTTGCTGTGGCAGAAATCATCAATAGCCGCAAAGCTA
CTGAATGCCAGACTGTATAAGCACCAGAGGGGACT--CAGATTGTGGTATAACACAAATCTCTACATCTTCAAACTGTCC
CCGTAATGCCCAGTTCGAAATCGTACACACTGTATTTTCAAGTGGTGCCCACATGTAG---TAACATTATTTTCACATCT
GTGCCCTGCG-TTGAATTTGATACCGGCAATGAACCAGTCAC-TTGTCTCTCGAGTT-GTCAGAGGACCGTTTTTCATGT
TCCGCATCTTGGATTGGTAACTACATGTA---------------------------------------------------
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--------------TAACATTTTCC-----ACATTTTTTTCCTGCAGCAGCAGCA-------------------------
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---------------------------------------------------------------------
>chr7D_21
--------------------CAGCCACGGAAGAATTCCATGTGCTATTATGAC-----TATATATACACCAAATCTTGT-
--AACCTCTGGAT------AGT------GCAGCTTAGTTTTAGTACGTCGGCTGCATCAGACTTCCAGTAAGCACTGCCA
CGATAAATGAATTGCGTTGTGTGTCTTTGAAATACTTGTGCGGAGCGATGCATATAGG-----TTTTTCC-GTTTCAAGC
TACATGTGTTGCATTGAAAGGGAGCTCTCTTTCCTGCACGCAGCTCAGGCAAAACAAATAAACAACGGAGTTAAGCAGGG
TCTACACTGTTGCGTTTGTTTCTTAAAA-AT---ATTACCTGAGATATCTCACACATATCTGTAGAGAATAGTTTTGCAA
CAGCAGTCTTCTTATTTCCAACGGTTTTAGCTTGAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTACATCATTGT
CACTCCCTGGCAAGTCCCAGC---ACCAGGTAGACAGGCCTTTTGAGAGAGA----CAGGTGTGATTGTTCAGGCCCGAT
GTTCTAGTGCTTGCTAGAGTGCTTTGTATGGCCAAAGGATGCCTCAGTAGGCCGTCTTGTGATGTACAGGCAGTATCTGG
TTCAGATGGGGAAGCTACTC-CCGGTAACCCCTATTTTTCCTTCTTGCTGTGGCAGAAATCATCAATAGCCGCAAAGCTA
CTGAATGCCAGACTGTATAAGCACCAGAGGGGACT--CAGATTGTGGTATAACACAAATCTCTACATCTTCAAACTGTCC
CCGTAATGCCCAGTTCGAAATCGTACATACTGTATTTTCAAGTGGTGCCCACATGTAG---TAACATTATTTTCACATCT
GTGCCCTGCG-TTGAATTTGATACCGGCAATGAACCAGTCAC-TTGTCTCTCGAGTT-GTCAGAGGACCGTTTTTCATGT
TCCGCATCTTGGATTGGTAACTACATGTA---------------------------------------------------
--------------------------------------------------------------------------------
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--------------TAACATTTTCC-----ACATTTTTGTCCTGCAGCAGCAGCA-------------------------
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---------------------------------------------------------------------
>chr5D_21
--------------------CAGCCACGGAAGAATTCCATGTGCTATTATGAC-----TATATATACACCAAATCTTGT-
--AACCTCTGGAT------AGT------GCAGCTTAGTTTTAGTACGTCGGCTGCATCAGACTTCCAGTAAGCACTGCCA
CGATAAATGAATTGCGTTGTGTGTCTTTGAAGTACTTGTGCAGAGCGATGCATATAGG-----TTTTTCC-GTTTCAAGC
TACATGTGTTGCATTGAAAGGGAGCTCTCTTTCCTGCACGCAGCTCAGGCAAAACAAATAAACAACGGAGTTAAGCAGGG
TCTACACTGTTGCGTTTGTTTCTTAAAA-AA---ATTACCTGAGATATCTCACACATATCTGTAGAGAATAGTTTTGCAA
CAGCAGTCTTCTTGTTTCCAACGGTTTTAGCTTGAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTACATCATTGT
CACTCCCTGGCAAGTCCCAGC---ACCAGGTAGACATGCCTTCT----GAGAGAGACAGAAGTGATTGTTCAGG-CCGAT
GTTCTAGTGCTTGCTAGAGTGCTTTGTATGGCCAAAGGATGCCTCAGTAGGCCGTCTTGTGATGTACAGGCAGTATCTGG
TTCAGATGGGGAAGCTACTC-CCGGTAACCCCTATTTTTCCTTCTTGCTGTGGCAGAAATCATCAATAGCCGCAAAGCTA
CTGAATGCCAGACTGTATAAGCACCAGAGGGGACT--CAGATTGTGGTATAACACAAATCTCTACATCTTCAAACTGTCC
CCGTAATGCCCAGTTCGAAATCGTACACACTGTATTTTCAAGTGGTGCCCACATGTAG---TAACATTATTTTCACATCT
GTGCCCTGCG-TTGAATTTGATACCGGCAATGAACCAGTCAC-TTGTCTCTCGAGTT-GTCAGAGGACCGTTTTTCATGT
TCCGCATCTTGGATTGGTAACTACATGTA---------------------------------------------------
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--------------TAACATTTTCC-----ACATTTTTTTCCTGCAGCAGCAGCA-------------------------
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---------------------------------------------------------------------
>chr4D_21
--------------------CAGCCACGGAAGAATTCCATGTGCTATTATGAC-----TATATATACACCAAATCTTGT-
--AACCTCTGGAT------AGT------GCAGCTTAGTTTTAGTACGTCGGCTGCATCAGACTTCCAGTAAGCACTGCCA
CGATAAATGAATTGCGTTGTGTGTCTTTGAAATACTTCTGCAGAGCGATGCATATAGG-----TTTTTCC-GTTTCAAGC
TACATGTGTTGCATTGAAAGGGAGCTCTCTTTCCTGCACGCAGCTCAGGCAAAACAAATAAACAACGGAGTTAAGCAGGG
TCTACACTGTTGCGTTTGTTTCTTAAAA-AA---ATTACCTGAGATATCTAACACATATCTGTAGAGAATAGTTTTGCAA
CAGCAGTCTTCTTGTTTCGAACGGTTTTAGTTTGAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTACATCATTGT
CACTCCCTGGCAAGTCCCAGC---ACCAGGTAGACAGGCCTTTTGAGAGAGA----CAGAGGTGATTGTTCAGGCCCGAT
GTTCTAGTGCTTGCTAGAGTGCTTTGTATGGCCAAAGGATGCCTCAGTAGGCCGTCTTGTGATGTACAGGCAGTATCTGG
TTCAGATGGGGAAGCTACTC-CTGGTAACCCCTATTTTTCCTTCTTGCTGTGGCAGAAATAATCAATAGCCGCAAAGCTA
CTGAATGCCAGACTGTATAAGCACCAGAGGGGACT--CAGATTGTGGTATAACACAAATCTCTACATCTTCAAACTGTCC
CCGTAATGCCCAGTTCGAAATCGTACATACTGTATTTTCAAGTGGTGCCCACATGTAG---TAACATTATTTTCACATCT
GTCCCCTGCG-TTGAATTTGATACCGGCAATGAACCAGTCAC-TTGTCTCTCGAGTT-GTCAGAGGGACGTTTTTCATGT
TCCGCATCTTGGATTGGTAACTACATGTA---------------------------------------------------
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--------------TAACATTTTCC-----ACATTTTTGTCCTGCAGCAGTAGCA-------------------------
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---------------------------------------------------------------------
>chr1D_72
-----------------------------------------------------------------------AATCTTGT-
--AACCTCTGGAT------AGTACTAGCACAACTTAATTTCAGTACGCTGGCTGTATCAGAATCCCAGTAAGCACTGCCA
AGAGAAATAAATTGCGTTGCGTGTCTTTCAAACACCCGTGCAGAGCGTTGTATATAGGT----TTTTTCC-TTTTCAAGT
TACATGTGTTGCATCGGAAGGGAGCTCCCTTTTCTGCACTCAGCTCAGGCAAAGA----AAACAATGGAATTAAGCAGGG
TGTAAACTGTTGCATTTTTTTTCTT-AA-AATAAATCACCCAACATGTCTCACACATATCCGTAGAGAATAGTTTTGCAA
CAGCAGTCTTCTTGTTTCCAACGGTTTTAGCTTGAATGGATCTCCCTGTGTCTCTGTTTCTGGGATCAGTGCATCATTGT
CT----CCGACAAGTCCCAGC---ACCAGATAGACAGGCCTTGT----GAGA----CATAGATGATTGCTCAGGCCCGAT
GTTCTAGTGCTTCCTAGAGTGCTTTGTATGGCCGAACGAAGCCTCAGTAGGTCGTGCTGTGATGTACAGACAATATTTCG
TTCAGATCGGGAGGCTACTCGCCATTGACCCCTA-TGTTTCTTGTTGGTGTGACAGTAATCGTCAGTTGTCGCAAAGCTG
CTGAATGCCAGACTGCATAAGAACGAGAGGGGAGT--CAGATTGTAGTATAACACAAATCTCTACATCTTCAAACTGCCC
CCGCAATGCCCAGTTTGAAAGTGTAAAGACTGTATTTTCAAGTGGTGCCTAATTGTATA--TAAC-ATATTTTCACATCT
GTGCCCTGCC-TTGAATTTGATATTAGTATAGAACCAGTCAC-TCGTCTCTTGAGTTTGCCAGAGGACCATTTTTCATGT
CCCGCACCTTGGATTGGTAACTAG--------------------------------------------------------
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-----------ATGTAACATTTTCC-----ACATTTCTGTCCTGCAGCAGCAGCACAA-------CCGT--------AGT
CGTCGTCGATGGCAGGGTTCGGCAGCCTGGCGCCCAAGACGAAGAACGTGGTGGTGGCGGGCGGGCTGACGGGGTTCGTC
TTCGGGGTGTACTACTACACCATGTGGGCGGTGGGCAGCACCGACGAGCTGCAGGTCACCATCGACAAGTTTGAGGACCT
GAAGAAGAAGGAGGAGGCC---------GCC---------TCC------GCAAGCTCCTCCACCCCAGGATCATCATAAA
CAA--GCACGCCCTTAACTTTGAAACTAGCTACTGCCTGCCTCT------CCCAGGACCATGGGTTCGGTTTGTATTTGA
TAATAATGGGTGCTGTTAGTTAGATGGAGCATTTTCATTCATGGCATGGATGGAGCTTGGAGTTGATGATGCTTTTTGTT
TGT------GTGAATCGTAGCTGCGGTGTCTGGAAATT-ATG--A-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TATGATATTGCCTCCGCTTCAAAATA----------
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---------------------------------------------------------------------
>chr1A_101
--------------------------------------------------------------------------------
--------------------GT------ACACCTTAATTTCAGTACGTCGGCTGTATCAGAATTCCAGTAAGCACTGCCA
AGATAAATAAATTGCGCTGTGTGTCTTTGAAACACTTGTGCAGAGCGATTTATATAGGCCCAATTTTTTTTTTTT-----
-----------------------------------------------------------------TGGAGTTAAGCAGGG
-------CCTTGCGTTTGTTTCCTAAAA-GA---ATTACACAAGATATCTCACACATGTCTGTAGATAATAGTTTTCCAA
CAGC-GTCTTCATGTTTCCAATGGTTTTAGTTTGAATGGACCTCCCTCTGTCTCTGTTTCTGGGATCAGTGCACCATTGT
CT----CCGACAAGTTCCAGC---ACCAGGTAGACAGGCCTTGT----GAGA----CATAGACGATTGCTCAGGCCCGAT
GTTCTAGTGCTTCCTAGAGTGCTTTGTATGGCTGAACGAAGCGTCAGTAGGTCGTGCTGTGATGTACAGACAGTATTTGG
TTCAGATAGGGAGGCTACTTGCCATTAACCCCTATGTTTC-TTGTTGGTGTGACAGTAATTGTCAGTTGTCGCAAAGCTG
CTGAATGCCAGGCTGTATAAGCACCAGAGGGGAGT--CAGATTGTAGTATGACACAAATCTCTACATCTTCAAACTGCCC
CCGCAATGCCTAGTTTGAAAGTGTACAGACTGTATTTTGAAGTGGTGCCTACATGTAG---TAACATAC-TTTCACATCC
ATGCCCCGCG-TTGAATTTGATACCGGCATGGAACCAGTCAC-TTGTCTCTCGAGTT-GCCAGAGGACCATTTTTCATGT
TCCGCACCTTGGATTGGTAACTACATGGTAACATTTTCCACATTTTTGTCCTTCAGCAGCAGCAGCAGCAACTTAGTCGT
CGTTGTCGTCGATGGCAGGGTTTGGCAGCCTGGCACCCAAGATGAAGAACGTGGTGGTGGCGGGCGGGCTGACGGGGTTC
GTCTTCGGGGTGTACTACTACACCATGTGGGCGGTAGGCAGCACCGACGAGCTGCAGGTCACCATCGACAAGTTTGAGGA
CCTGAAGAAGAAGGAGGCAGCCGCCTCCGCCGCTGCCGCAAGCGCCTCAACCCCGGGATCCTCATAAACAAATGCGCCCT
TAACTTTGAAACTAGCTGCTGCCTCTGAACCTGCCCAGGACCATGGGTTTGGTTTGTATTGATAATAATAATGGGTGCTT
TTAGAGGAAATACCCAATGGTTCCTGGGTACATATGTACCCTATATGGGGATTTATTTTTAATAGTTAAACAAAAAGTCA
AAATAGTTAAGAAACTATTTTTAGAATAAAGTTGACTTACTTACGCACTAGTATACATAATTTTCACAAAAAAGAAAAAG
ATGTTGACTTCACAGCGAAAAAGACAAAATTTATTTGCTATTATAGGTCACTATTCACGCTATTTTGACCGGAAATTTGT
CTTTTTTGAAAAGAAGTCAAAAGGATATTTTTTTTGTGGATTTTATTTTTCACGAGTACAATAGAAGGTCAAGTTTATTT
CAAAAATATTTTCAGGAATTTTTGACTTTTTGTTGAATTACTAATTTTTTTCCCATATAGGGTGCATATGTCCCCATAGA
CCAAAAGTTCCCCTCCGTGCTTTTAGTTAGATGCAGCATTTTCATTCATGGCATGGATGGAGTTTGGAGTTGATGATGCT
TTTTGTTTGTGAATGGTAGCCGCGGTTTATGATATGATGATACAGGCTCCACTTCAAAATATAAGGCGTAATGTTTCTGC
CCCTCAGAAATAAATCAGGCTTTTCGATGTTTGACCTTTATTAGTTTTGCAATGGAGAGAGCAGTGCCTTTTGTAGGCAG
GGTCCTCTGGTTTGTTGTCGCTGCGTCGTAACTTTTCTCTCAGTTGTGAGAGGACCATTTTTTGTGTTTCGCACCTTGGA
TTGGTAACTACATGTAACATTTTCC-----ACATTTTTGTCCTGCAGCAGCAGCA--A-------CCTAGTTGTCTTCGT
CGTCGTCGATGGCAGGGTTTGGCAGCCTGGCGCCCAAGACGAAGAACGTGGTGGTGGCGGGCGGGCTGACTGGGTTCGTC
TTTGGGGTGTACTACTACACCATGTGGGCAGTGGGCAGCACCGACGAGCTGCAGGTCACCATCGACAAGTTTGAGGACCT
GAAGAAGAAGGAGGCGGCC---------GCC---------TCCACCGCCGCAAGCGCCTCCACCCCGGGATCCTCCTAAA
CAG--GCGCGCCCTTAACTTTGAAACTAGCTACTACTGCCTCTGAACCTGCCCAGGACCATGGGTTTGGTTTGTA-TTGA
TAATAATGGGTGCTTTTAGTTAGATGCAGCATTTTCATTCATGGCATGGATGGCGTTTGGAGTTGATGATGCTTTTTGTT
TGT------G--AATGGTAGCCGCGGTTTATGATATG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGATACAGGCTCCGCTTCAAAATA----------
---------TAAGGCGTAATGTTTCTGCCCTTCA-----------------------------GAAATAAATCAGGCTTT
TCGATGTTTGACCT---TTATTAGTTTTGCAATGGAGAGAGTAGTACCTTTTGTAGGCAGGGTCCTCTGGTTTGT-GTCG
CTGTGTTGAAATATGTTGCCCGC--------CCCCCTTTCTCTACCAGTTCGGTCTTTTGGATAAATGATGGTTGAATC-
GGTCGGAACATGAATGAACTCACTGTAAC---ACACTGCATCCGTTCCTTGATCTCCCAAGAATAAGGGGC---------
---------------------------------------GTGCGTGTGTCGGTACACTGGACGCGGGCTGTTCATTTGTA
TTTGTTGGGAATCCTTGCCTTGTTCCCCAAGAAGGTCCGGTTATCAACGGAATTTGGTTAATTCAATCCAAAGCCGATTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>chr1B_362
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
CAGC-GTCTTCTCGTTTCCAACGGTTTTAGCTCCAATGGATCTCTCTTTGTCTCTGTTTCTGGGATCAGTGCATCGTTGT
CACTCCCCGGCAAGTCCCAGCAGAACCAGGTAGACAGGCCTTGT----GAGAGAGACAGAGACGATTGTTCAGGTCCCAT
GTTCTAGTGCTTGCTAGAGTGCTTTGTATGGCCCAAGGATGCCTCAGTAGGTCGTGCTGTGATGTGCAGACAATATTTGG
TTCAGATGGGGAGGCTATGCGCCAGTAACCCCTATTTTTC-TTGTTCGTGTGGCAGAAATTGTCAGTTGTCGCAAAGCTG
CTGAATGACGAATTATACAAGCACCAGAGGGGAGCCACAGATTGTAGTACAACACAAATCTCCATATCTTCAAACTGTCC
CCGTAATGCCCAGTTCGAAAGTGTACATACTGTATTTTGAAGCGGTGCCCACATGTAG---TAAC-ATATTTGCACATCC
GTGCCCTGCG-TTGAATTTGATACCAGCATGGAACCGGCCAC-TTGTCTCTCAAGTT-GTCAGAGGACCATCTTTCATGT
TTCACACCTTGGATTCGTAACCACATGTAACA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------TTTTC-----ACATTTTTGTCCTGCAGCAACCTCC------------------TCCTCGT
CGTCGTCGATGGCAGGGTTCGGCAGCCTGGCGCCCAAGACGAAGAACGTGGTGGTGGCGGGCGGGCTGACGGGGTTCGTC
TTCGGGGTGTACTACTACACCACGTGGGCGGTGGGCAGCACCGACGAGCTGCAGGTCACCATCAACAAGTTTGAGGACCT
TAAGAAGAAGGAGGAGGCT---------GCCGCCTCCGCAGCC------GCAAGCACCTCCACCCCGGGATCCTCATAAA
CAAATGCTCTCCCTTAACTA-----------GCTGCTGCCTCTCAACCTGCCCAGGACCATGGGTTTGGTTTGTA-TTGA
TAATAATGGGTGCTGTTAGTTAGATGGAGCATTTTCATTCCTGGCATGGATGGAGTTTGGAGTTGATGATGCTTTTTGTT
TGT------GTGAATGGTAGCCGCGGTGTCTGGAAGTT-ATG--A-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TATGATACTGCCTCCGCTTCAAAATACAGTCTCCGC
TTCAAAATATAAGGTGTACTGTTTCTGTCCCTCA-----------------------------GAAATAAATCAGGATTT
TTGATGTTTGACCT---TC---AGTTTTGCAACGGATGGAGTAGTACCTTCTGGAGGCAGGGTCCTCTGGTTTGTCGTCG
CTGTGTTGAAATATGTTGCCCGTCTCTCTCTCTCTCTCTCTCTACCAGTTCGGTCTTTTGGATGGATGATGTGTGAATA-
GGTTGGAACATGAATGCATTCACTGTAAT---AGACTGCATCCTTTCCTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr1B_362
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
CAACAGTCTTGTTGTTTCCAACGGTTTTAGCTTGAATGGATCTCCCTCTGTCTCTGTTTCTGGGATCAGTACATCATTGT
CACTCCCTGGCAAGTCCCAGC---ACCAGGTAGACAGGCCTTTT----GAGAGAGACGGAGGTGATTGTTCAGGCCCGAT
GTTCTAGTGCTTGCTAGAGTGCTTTGTATGGCCAAAGAATGCCTCAGTAGGCCATCTTGTGATGTACAGGCAGTATCTGG
TTCAGATGGGGAAGCTACTC-CCGGTAACCCCTATTTTTCCTTCTTGCTGTGGCAGAAATCATCAATAGCCGCAAAGCTA
CTGAATGCCAGACTGTATAAGCACCAGAGGGGACTA--AGATTGTGGTATAACACAAATCTCTACATCTTCAAACTGTCC
CCGTAATGCCCAGTTCGAAATCGTACATACTGTATTTTCAAGTGGTGCCCACATGTAG---TAACATTATTTTCACATAT
GTGCCCTGTG-TTGAATTTGATACCGGCAATGAACCAGTCAC-TTGTCTCTAGAGTT-GTCAGAGGACCATTTTTCATGT
TCTACATCTTGGATTGGTAACTACATGTA---------------------------------------------------
--------------------------------------------------------------------------------
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--------------TAACATTTTCC-----ACATTTTTGTCATGCGGCAGCAGCA--A-------CCTA---GTTGTCAT
CGTCGTCGATGGCAGGGTT-------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------
>chr7A_882
--------------------------------------------------------------------------------
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-----------------------------------------------------AGTT-GTCAGACGACCATTTTTCATAT
TTCGCACCTTGGATTGGTAACTACATGTAACA------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TCTTCCCAAGACATTTTTGTCCTGCAGCAGCAGCA--A-------CCGC--------CGT
CGTTGTCGATGGCAGGGTTCGGCAGCCTGGCGCCCAAGACGAAGAACGTGGTGGTGGCGGGCGGGCTGACGGGGTTCGTC
TTTGGGGTGTACTACTACACCATGTGGGCGGTGGGCAGCACCGACGAGCTGCAGGTCACCATCGACAAGTTTGAGGACCT
GAAGAAGAAGGAGGAGGCC---------GCCGCCA---------------CAAGCTCCTCCACCCCAGGATCATCATAAA
CAA--GCACGCC-----CTTTGAAACTAGCTACTACTGCCTCTCAACCTGCCCGGGACCATGGGTTTGGTTTGTA-TTGA
TAATAATGGGTGCTGT--GTTTGATGGAGCATTTTCATTCATGGCACGGATGGAGCTTGGAGTTGATGATGCTTTTTGTT
TGT------G--AATGGTAGCCGCGGTGTCTAGAAGTT-ATG--ATACTCCCTCCTTCCATTTATATAAGGCCTAATGCT
TTTTTCAAGACCGCCTTTGACTATTGATATGATTAATAATACATGAGATGTATAATGTGAAAATTATATTATTGGAAGCT
CTTTTTTACTTACGAATTTGACGGTATGCTTTGTTTAACTTGCATGTCATATATTATTGCTCTAACACTTGGTCAAAACT
AGCCTCGTAAACGTATTAGGCCCTATATAGATGAAAGGAGAGAGTATGATACTGCCTCCGCTTCAAAATA----------
---------TAAGATGTGTTGTTTTTGCCCCTC---------------------------------ATAAAACAGGTTTT
TCTATGTTTGTCAGACCT--TTAGTTTTGCAACGGATGGAGTAGTACCTTTTGGAGGTAGGGCCCTCTGGTTTGTTGTTG
TTGCGTTGAAATATGTTGCCTGT--------CCCTCTCTCTCTATCAGTCCGGTCTTTTGAATGGATGATAATTGAATC-
GGTCGGCACATGAATGAATTCATTGT------------------------------------------------------
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>chr1B_1096
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-----------------------GTGGGCGGTGGGCAGCACCGATGAGCTGCAGGTCACCATCAACAAGTTTGAGGAGCT
GAAGAAGGAGGAGGAGGCC---------GCCTCCGCC---GCC------GCAAGCACCTCCACCCCGGGATCCTCATAAA
AAAATG--CTCCCTTAACTA-----------GCTGCTGCGTCTCAACCTGCCCAGGACCATGGGTTTGGTTTGTA-TTGA
TAATAATGGGTGCTGTTAGATAA---GAGCATTTTCATCAATTGCATGGATGGAGTTTGGAGTTGATGATGCTTTTTGTT
TGT------GTGAATGGTAGCCGCGGTGTCTGAAAGTTAATG--A-----------------------------------
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--------------------------------------------TATGATACTGCCTCCGCTTCAAAATA----------
---------TAAGACGTGTTGGTTTTGCCCCTC---------------------------------AGAAATCAGGCTTT
TCGAAACCTTAAGTATCTTATAAGCTTTGCAACGGATGGAGTAGTACCTTTTGGAGGCAGGGCCCTCTGGTTTGCCGTTG
CTGCGTTGAAATATGTTGCCCGT--------CC--CTCTTTCTATCAGTCCGGTCTTTTGGATGGATGATTG----ATAG
GGTCGAAACATGAATGAATTCATTGTAAT---ACACCGCATCCGCTCCTTTTCTT-------------------------
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>SNPs
-------S-----SSSS--S------S-------S-------SS--S---S-SSSSSS---S--S--------------S
SS-----------SSSSSS------------------------------S------------------------------
---------------S--S------S------------------------------------------------------
--------S------------------------------------------S----------------------------
---------------S------------S---------------------------------------------------
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-----S----------------------------------S------S-------------------SS-----------
--------S-----------------------------------------------------------------------
--------------------S------------------------S----------------------------------
------------S---------------------------------------------SSS--------S----------
---S------S-------------------------------S--------------------------------S----
--------------S-------S--S------------------------------------------------------
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-------------------------------------------------------SS-SSSSSSS---------------
-----S--------------------------S-------------S---------------------------------
-----------------------------------------------------------S--------------------
------------------SSSSSSSSSS----------------------------------------------------
----------------------------------------------------------S---------------------
------------------------------S---------------------------------------------SS--
SSSSSSSSS-------S-------S-----------------SS------------------------------------
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-----------------------------------------------------------S--------------------
-------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
--------------------S-----------------------------------------------------------
-------------------SS--------------------SS----------------S--------------------
-----------------------------SSS-S-----------------S---SSSSS-S-SS-SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-------S---S----S----SS--SSSS-SSSS-----
----------S-----------------------------SS--S--S--------------SS-SSSS--SS-S-S--S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_20
ACAGAGCACAGACTAGCAGC------------------------------------------------------------
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>reverse_3264
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---------------------------------------------------------------GGGCTGATCATGTGTTG
GGA-----------------------------------------------------------------------------
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