Multiple sequence alignment - TraesCS1B01G399800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G399800 chr1B 100.000 2316 0 0 1 2316 630710553 630712868 0.000000e+00 4277.0
1 TraesCS1B01G399800 chr1B 90.385 52 4 1 657 707 377923050 377923101 1.490000e-07 67.6
2 TraesCS1B01G399800 chr1D 92.453 901 53 13 714 1608 458831282 458832173 0.000000e+00 1273.0
3 TraesCS1B01G399800 chr1D 87.462 662 42 23 44 685 458829789 458830429 0.000000e+00 725.0
4 TraesCS1B01G399800 chr1D 100.000 28 0 0 1 28 458829719 458829746 4.000000e-03 52.8
5 TraesCS1B01G399800 chr1A 88.248 953 56 22 714 1645 551303982 551304899 0.000000e+00 1088.0
6 TraesCS1B01G399800 chr1A 88.595 491 32 11 44 515 551300766 551301251 2.000000e-160 575.0
7 TraesCS1B01G399800 chr1A 81.967 122 15 6 2158 2275 551305351 551305469 1.890000e-16 97.1
8 TraesCS1B01G399800 chr1A 100.000 28 0 0 1 28 551300696 551300723 4.000000e-03 52.8
9 TraesCS1B01G399800 chr2A 90.000 80 7 1 1642 1720 713027507 713027586 4.070000e-18 102.0
10 TraesCS1B01G399800 chr2A 97.959 49 1 0 661 709 677403729 677403681 4.100000e-13 86.1
11 TraesCS1B01G399800 chr2A 94.118 51 2 1 657 706 677402306 677402356 2.470000e-10 76.8
12 TraesCS1B01G399800 chr5D 91.379 58 4 1 649 706 375527109 375527165 6.860000e-11 78.7
13 TraesCS1B01G399800 chr7A 94.000 50 3 0 657 706 684127761 684127810 2.470000e-10 76.8
14 TraesCS1B01G399800 chr3A 92.593 54 3 1 657 709 743799140 743799087 2.470000e-10 76.8
15 TraesCS1B01G399800 chr3A 95.652 46 2 0 661 706 743797718 743797763 8.870000e-10 75.0
16 TraesCS1B01G399800 chr7D 92.000 50 4 0 657 706 489681341 489681390 1.150000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G399800 chr1B 630710553 630712868 2315 False 4277.000 4277 100.0000 1 2316 1 chr1B.!!$F2 2315
1 TraesCS1B01G399800 chr1D 458829719 458832173 2454 False 683.600 1273 93.3050 1 1608 3 chr1D.!!$F1 1607
2 TraesCS1B01G399800 chr1A 551300696 551305469 4773 False 453.225 1088 89.7025 1 2275 4 chr1A.!!$F1 2274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 3575 0.038744 CTCCAAACACAGCTCCCCAT 59.961 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2205 4955 0.321996 GAAGCCTTCAACCGAGTCCT 59.678 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 111 7.865385 GTGAACTTGTTAGAAAAATATGCACCA 59.135 33.333 0.00 0.00 0.00 4.17
162 188 2.437359 CTTCTTCCTGGGCTGGCG 60.437 66.667 0.00 0.00 0.00 5.69
166 192 1.227674 CTTCCTGGGCTGGCGTATC 60.228 63.158 0.00 0.00 0.00 2.24
204 233 0.979665 TGAGGTTGAGGCTTGAGAGG 59.020 55.000 0.00 0.00 0.00 3.69
259 289 5.449304 GTGTCTAACACTGTTTTATGTGCC 58.551 41.667 0.00 0.00 45.27 5.01
297 327 7.710475 CCTATTGGAATTCACAACACTGTTTTT 59.290 33.333 7.93 0.00 31.17 1.94
315 346 9.143155 ACTGTTTTTGTAGGATAAATGTCCTTT 57.857 29.630 3.93 0.00 46.45 3.11
327 358 5.728637 AAATGTCCTTTGGGTCAGAAATC 57.271 39.130 0.00 0.00 34.45 2.17
354 386 4.523943 ACCAATGCAGCATAGAAAGAAACA 59.476 37.500 8.75 0.00 0.00 2.83
356 388 5.927689 CCAATGCAGCATAGAAAGAAACAAA 59.072 36.000 8.75 0.00 0.00 2.83
360 392 5.463061 TGCAGCATAGAAAGAAACAAAAAGC 59.537 36.000 0.00 0.00 0.00 3.51
380 412 2.906354 CATAGGTCTGGTGGTTACTGC 58.094 52.381 0.00 0.00 0.00 4.40
383 422 0.321653 GGTCTGGTGGTTACTGCTGG 60.322 60.000 0.00 0.00 0.00 4.85
388 427 1.202879 TGGTGGTTACTGCTGGGAAAG 60.203 52.381 0.00 0.00 0.00 2.62
446 498 8.462016 GGTTGTAGCATGAAGAAACTATCAAAT 58.538 33.333 0.00 0.00 0.00 2.32
447 499 9.846248 GTTGTAGCATGAAGAAACTATCAAATT 57.154 29.630 0.00 0.00 0.00 1.82
452 504 6.753744 GCATGAAGAAACTATCAAATTCCACC 59.246 38.462 0.00 0.00 0.00 4.61
469 521 7.931578 ATTCCACCGAAAATTATACAGAACA 57.068 32.000 0.00 0.00 0.00 3.18
470 522 6.978343 TCCACCGAAAATTATACAGAACAG 57.022 37.500 0.00 0.00 0.00 3.16
472 524 6.938030 TCCACCGAAAATTATACAGAACAGTT 59.062 34.615 0.00 0.00 0.00 3.16
522 574 2.659800 CGAAGGTCTCCTCCACAGT 58.340 57.895 0.00 0.00 30.89 3.55
529 581 0.188587 TCTCCTCCACAGTCCACACT 59.811 55.000 0.00 0.00 0.00 3.55
540 592 2.740055 CCACACTGCTGTCTCGGC 60.740 66.667 0.00 0.00 36.10 5.54
558 612 2.041405 CCCTCCTCTCCCCTGTCC 60.041 72.222 0.00 0.00 0.00 4.02
561 615 1.755008 CTCCTCTCCCCTGTCCGAC 60.755 68.421 0.00 0.00 0.00 4.79
637 704 6.672266 TTATTAGGTTTTGTTTCCATGGCA 57.328 33.333 6.96 0.00 0.00 4.92
655 722 2.268920 GTGGAGGCGATGAAGGCA 59.731 61.111 0.00 0.00 39.37 4.75
698 1747 0.537828 TTTAGGGGTTTGCGTCCCAC 60.538 55.000 11.75 0.00 46.26 4.61
709 1921 1.831106 TGCGTCCCACTGAACTATCAT 59.169 47.619 0.00 0.00 34.37 2.45
710 1922 2.205074 GCGTCCCACTGAACTATCATG 58.795 52.381 0.00 0.00 34.37 3.07
712 1924 3.448686 CGTCCCACTGAACTATCATGTC 58.551 50.000 0.00 0.00 34.37 3.06
803 3416 5.469479 CAGCCAATCCTTTTTAATGAACGT 58.531 37.500 0.00 0.00 0.00 3.99
852 3465 7.282332 TGAGATTCATGTCACTACATAGGAG 57.718 40.000 0.00 0.00 44.70 3.69
894 3508 3.876914 TCAAATCATTCCTATGCACGTCC 59.123 43.478 0.00 0.00 0.00 4.79
925 3539 5.014858 CGACTATATAAGAAGCCTACCCCA 58.985 45.833 0.00 0.00 0.00 4.96
944 3558 2.368221 CCAATCTCCCTCCTGTCATCTC 59.632 54.545 0.00 0.00 0.00 2.75
956 3570 2.740981 CTGTCATCTCCAAACACAGCTC 59.259 50.000 0.00 0.00 0.00 4.09
959 3573 0.329596 ATCTCCAAACACAGCTCCCC 59.670 55.000 0.00 0.00 0.00 4.81
961 3575 0.038744 CTCCAAACACAGCTCCCCAT 59.961 55.000 0.00 0.00 0.00 4.00
988 3603 5.505780 TCTCTTACTCCTCCAGAAGAAGAG 58.494 45.833 0.00 0.00 38.78 2.85
1082 3697 5.977129 CCACAGGTAATTGACTGTTTGTTTC 59.023 40.000 12.48 0.00 45.03 2.78
1090 3705 8.999431 GTAATTGACTGTTTGTTTCTCCTGATA 58.001 33.333 0.00 0.00 0.00 2.15
1092 3707 4.997395 TGACTGTTTGTTTCTCCTGATAGC 59.003 41.667 0.00 0.00 0.00 2.97
1094 3709 4.042187 ACTGTTTGTTTCTCCTGATAGCCT 59.958 41.667 0.00 0.00 0.00 4.58
1357 3983 6.105397 ACACACGAGTAGAATAAAAAGGGA 57.895 37.500 0.00 0.00 0.00 4.20
1391 4017 7.272978 TCTGTGCTACTCTAGTTTGTTCTTTT 58.727 34.615 0.00 0.00 0.00 2.27
1414 4042 7.608308 TTCTTTTTGACCTTGGATTTTGTTG 57.392 32.000 0.00 0.00 0.00 3.33
1431 4059 4.074627 TGTTGGAAGGTTCACACGAATA 57.925 40.909 0.00 0.00 32.61 1.75
1452 4080 0.250338 GGCCGAAACTCAGTGGACTT 60.250 55.000 0.00 0.00 0.00 3.01
1489 4117 7.848051 CAGTTCTGAGATTATTTTGTATCGCAC 59.152 37.037 0.00 0.00 0.00 5.34
1490 4118 7.549134 AGTTCTGAGATTATTTTGTATCGCACA 59.451 33.333 0.00 0.00 34.51 4.57
1491 4119 7.841915 TCTGAGATTATTTTGTATCGCACAA 57.158 32.000 0.00 0.00 45.49 3.33
1560 4190 8.993121 AGAGAGTAATTGTTAGTCACATGTTTG 58.007 33.333 0.00 0.00 37.91 2.93
1564 4194 5.705609 ATTGTTAGTCACATGTTTGTCCC 57.294 39.130 0.00 0.00 34.43 4.46
1619 4253 3.133542 TGACATGGCAAACATCCAAAACA 59.866 39.130 0.00 0.00 37.84 2.83
1621 4255 3.387374 ACATGGCAAACATCCAAAACAGA 59.613 39.130 0.00 0.00 37.84 3.41
1630 4264 7.254727 GCAAACATCCAAAACAGATTAGCAAAA 60.255 33.333 0.00 0.00 0.00 2.44
1632 4266 7.054491 ACATCCAAAACAGATTAGCAAAAGT 57.946 32.000 0.00 0.00 0.00 2.66
1645 4279 0.951558 CAAAAGTCCGACAAGTGGGG 59.048 55.000 0.40 0.00 0.00 4.96
1646 4280 0.549469 AAAAGTCCGACAAGTGGGGT 59.451 50.000 0.40 0.00 0.00 4.95
1647 4281 0.549469 AAAGTCCGACAAGTGGGGTT 59.451 50.000 0.40 0.00 0.00 4.11
1648 4282 1.426751 AAGTCCGACAAGTGGGGTTA 58.573 50.000 0.40 0.00 0.00 2.85
1649 4283 1.426751 AGTCCGACAAGTGGGGTTAA 58.573 50.000 0.40 0.00 0.00 2.01
1650 4284 1.071228 AGTCCGACAAGTGGGGTTAAC 59.929 52.381 0.40 0.00 0.00 2.01
1651 4285 0.397564 TCCGACAAGTGGGGTTAACC 59.602 55.000 16.85 16.85 39.11 2.85
1652 4286 0.108963 CCGACAAGTGGGGTTAACCA 59.891 55.000 25.71 3.65 42.91 3.67
1653 4287 1.477195 CCGACAAGTGGGGTTAACCAA 60.477 52.381 25.71 10.91 43.34 3.67
1654 4288 2.299521 CGACAAGTGGGGTTAACCAAA 58.700 47.619 25.71 10.54 43.34 3.28
1655 4289 2.688958 CGACAAGTGGGGTTAACCAAAA 59.311 45.455 25.71 7.95 43.34 2.44
1656 4290 3.130693 CGACAAGTGGGGTTAACCAAAAA 59.869 43.478 25.71 5.40 43.34 1.94
1674 4308 3.876309 AAAAGTTTGGGTAGAGCCAGA 57.124 42.857 0.01 0.00 39.65 3.86
1675 4309 4.388577 AAAAGTTTGGGTAGAGCCAGAT 57.611 40.909 0.01 0.00 39.65 2.90
1676 4310 3.636153 AAGTTTGGGTAGAGCCAGATC 57.364 47.619 0.01 0.00 39.65 2.75
1677 4311 2.839228 AGTTTGGGTAGAGCCAGATCT 58.161 47.619 0.01 0.00 39.65 2.75
1678 4312 3.995636 AGTTTGGGTAGAGCCAGATCTA 58.004 45.455 0.00 0.00 39.65 1.98
1679 4313 4.362677 AGTTTGGGTAGAGCCAGATCTAA 58.637 43.478 0.00 0.00 39.65 2.10
1680 4314 4.407296 AGTTTGGGTAGAGCCAGATCTAAG 59.593 45.833 0.00 0.00 39.65 2.18
1681 4315 3.689872 TGGGTAGAGCCAGATCTAAGT 57.310 47.619 0.00 0.00 39.65 2.24
1682 4316 3.567397 TGGGTAGAGCCAGATCTAAGTC 58.433 50.000 0.00 0.00 39.65 3.01
1683 4317 3.205507 TGGGTAGAGCCAGATCTAAGTCT 59.794 47.826 0.00 0.00 39.65 3.24
1684 4318 4.219919 GGGTAGAGCCAGATCTAAGTCTT 58.780 47.826 0.00 0.00 39.65 3.01
1685 4319 4.038642 GGGTAGAGCCAGATCTAAGTCTTG 59.961 50.000 0.00 0.00 39.65 3.02
1686 4320 4.038642 GGTAGAGCCAGATCTAAGTCTTGG 59.961 50.000 0.00 0.00 33.66 3.61
1687 4321 2.433970 AGAGCCAGATCTAAGTCTTGGC 59.566 50.000 11.00 11.00 40.06 4.52
1688 4322 2.433970 GAGCCAGATCTAAGTCTTGGCT 59.566 50.000 19.19 19.19 46.18 4.75
1689 4323 3.639094 GAGCCAGATCTAAGTCTTGGCTA 59.361 47.826 19.15 0.00 44.89 3.93
1690 4324 3.640967 AGCCAGATCTAAGTCTTGGCTAG 59.359 47.826 18.04 0.00 44.00 3.42
1691 4325 3.639094 GCCAGATCTAAGTCTTGGCTAGA 59.361 47.826 11.55 0.00 38.38 2.43
1692 4326 4.283212 GCCAGATCTAAGTCTTGGCTAGAT 59.717 45.833 11.55 0.29 38.38 1.98
1693 4327 5.478679 GCCAGATCTAAGTCTTGGCTAGATA 59.521 44.000 11.55 0.00 38.38 1.98
1694 4328 6.015010 GCCAGATCTAAGTCTTGGCTAGATAA 60.015 42.308 11.55 0.00 38.38 1.75
1695 4329 7.472100 GCCAGATCTAAGTCTTGGCTAGATAAA 60.472 40.741 11.55 0.00 38.38 1.40
1696 4330 7.870445 CCAGATCTAAGTCTTGGCTAGATAAAC 59.130 40.741 1.20 0.00 34.79 2.01
1697 4331 7.593273 CAGATCTAAGTCTTGGCTAGATAAACG 59.407 40.741 1.20 0.00 34.79 3.60
1698 4332 5.589192 TCTAAGTCTTGGCTAGATAAACGC 58.411 41.667 1.20 0.00 34.79 4.84
1699 4333 3.180891 AGTCTTGGCTAGATAAACGCC 57.819 47.619 1.20 0.00 44.02 5.68
1700 4334 2.158943 AGTCTTGGCTAGATAAACGCCC 60.159 50.000 1.20 0.00 43.12 6.13
1701 4335 2.116238 TCTTGGCTAGATAAACGCCCT 58.884 47.619 0.00 0.00 43.12 5.19
1702 4336 2.158957 TCTTGGCTAGATAAACGCCCTG 60.159 50.000 0.00 0.00 43.12 4.45
1703 4337 0.179056 TGGCTAGATAAACGCCCTGC 60.179 55.000 0.00 0.00 43.12 4.85
1717 4351 1.705873 CCCTGCGATAAGAGGGTAGT 58.294 55.000 0.00 0.00 43.75 2.73
1718 4352 2.040178 CCCTGCGATAAGAGGGTAGTT 58.960 52.381 0.00 0.00 43.75 2.24
1719 4353 3.228453 CCCTGCGATAAGAGGGTAGTTA 58.772 50.000 0.00 0.00 43.75 2.24
1720 4354 3.833070 CCCTGCGATAAGAGGGTAGTTAT 59.167 47.826 0.00 0.00 43.75 1.89
1721 4355 4.322049 CCCTGCGATAAGAGGGTAGTTATG 60.322 50.000 0.00 0.00 43.75 1.90
1722 4356 4.523173 CCTGCGATAAGAGGGTAGTTATGA 59.477 45.833 0.00 0.00 0.00 2.15
1723 4357 5.010719 CCTGCGATAAGAGGGTAGTTATGAA 59.989 44.000 0.00 0.00 0.00 2.57
1724 4358 5.839621 TGCGATAAGAGGGTAGTTATGAAC 58.160 41.667 0.00 0.00 0.00 3.18
1725 4359 5.221382 TGCGATAAGAGGGTAGTTATGAACC 60.221 44.000 0.00 0.00 34.85 3.62
1726 4360 5.010820 GCGATAAGAGGGTAGTTATGAACCT 59.989 44.000 0.00 0.00 35.97 3.50
1727 4361 6.462628 GCGATAAGAGGGTAGTTATGAACCTT 60.463 42.308 0.00 0.00 35.97 3.50
1728 4362 6.924060 CGATAAGAGGGTAGTTATGAACCTTG 59.076 42.308 0.00 0.00 35.97 3.61
1729 4363 7.417570 CGATAAGAGGGTAGTTATGAACCTTGT 60.418 40.741 0.00 0.00 35.97 3.16
1730 4364 5.422214 AGAGGGTAGTTATGAACCTTGTG 57.578 43.478 0.00 0.00 35.97 3.33
1731 4365 4.844655 AGAGGGTAGTTATGAACCTTGTGT 59.155 41.667 0.00 0.00 35.97 3.72
1732 4366 5.309806 AGAGGGTAGTTATGAACCTTGTGTT 59.690 40.000 0.00 0.00 40.81 3.32
1733 4367 5.313712 AGGGTAGTTATGAACCTTGTGTTG 58.686 41.667 0.00 0.00 37.29 3.33
1734 4368 5.072600 AGGGTAGTTATGAACCTTGTGTTGA 59.927 40.000 0.00 0.00 37.29 3.18
1735 4369 5.944007 GGGTAGTTATGAACCTTGTGTTGAT 59.056 40.000 0.00 0.00 37.29 2.57
1736 4370 6.433093 GGGTAGTTATGAACCTTGTGTTGATT 59.567 38.462 0.00 0.00 37.29 2.57
1737 4371 7.039993 GGGTAGTTATGAACCTTGTGTTGATTT 60.040 37.037 0.00 0.00 37.29 2.17
1738 4372 7.807907 GGTAGTTATGAACCTTGTGTTGATTTG 59.192 37.037 0.00 0.00 37.29 2.32
1739 4373 7.581213 AGTTATGAACCTTGTGTTGATTTGA 57.419 32.000 0.00 0.00 37.29 2.69
1740 4374 7.651808 AGTTATGAACCTTGTGTTGATTTGAG 58.348 34.615 0.00 0.00 37.29 3.02
1741 4375 4.916983 TGAACCTTGTGTTGATTTGAGG 57.083 40.909 0.00 0.00 37.29 3.86
1742 4376 3.636300 TGAACCTTGTGTTGATTTGAGGG 59.364 43.478 0.00 0.00 37.29 4.30
1743 4377 2.597455 ACCTTGTGTTGATTTGAGGGG 58.403 47.619 0.00 0.00 0.00 4.79
1744 4378 2.176798 ACCTTGTGTTGATTTGAGGGGA 59.823 45.455 0.00 0.00 0.00 4.81
1745 4379 3.230134 CCTTGTGTTGATTTGAGGGGAA 58.770 45.455 0.00 0.00 0.00 3.97
1746 4380 3.640967 CCTTGTGTTGATTTGAGGGGAAA 59.359 43.478 0.00 0.00 0.00 3.13
1747 4381 4.100808 CCTTGTGTTGATTTGAGGGGAAAA 59.899 41.667 0.00 0.00 0.00 2.29
1748 4382 5.396213 CCTTGTGTTGATTTGAGGGGAAAAA 60.396 40.000 0.00 0.00 0.00 1.94
1770 4404 7.930513 AAAAGAGTCAAAATCCAATCGAAAC 57.069 32.000 0.00 0.00 0.00 2.78
1771 4405 5.629079 AGAGTCAAAATCCAATCGAAACC 57.371 39.130 0.00 0.00 0.00 3.27
1772 4406 5.316987 AGAGTCAAAATCCAATCGAAACCT 58.683 37.500 0.00 0.00 0.00 3.50
1773 4407 5.770162 AGAGTCAAAATCCAATCGAAACCTT 59.230 36.000 0.00 0.00 0.00 3.50
1774 4408 6.013842 AGTCAAAATCCAATCGAAACCTTC 57.986 37.500 0.00 0.00 0.00 3.46
1775 4409 5.534654 AGTCAAAATCCAATCGAAACCTTCA 59.465 36.000 0.00 0.00 0.00 3.02
1776 4410 6.209391 AGTCAAAATCCAATCGAAACCTTCAT 59.791 34.615 0.00 0.00 0.00 2.57
1777 4411 7.393234 AGTCAAAATCCAATCGAAACCTTCATA 59.607 33.333 0.00 0.00 0.00 2.15
1778 4412 8.190784 GTCAAAATCCAATCGAAACCTTCATAT 58.809 33.333 0.00 0.00 0.00 1.78
1779 4413 8.190122 TCAAAATCCAATCGAAACCTTCATATG 58.810 33.333 0.00 0.00 0.00 1.78
1780 4414 5.695851 ATCCAATCGAAACCTTCATATGC 57.304 39.130 0.00 0.00 0.00 3.14
1781 4415 4.522114 TCCAATCGAAACCTTCATATGCA 58.478 39.130 0.00 0.00 0.00 3.96
1782 4416 4.335315 TCCAATCGAAACCTTCATATGCAC 59.665 41.667 0.00 0.00 0.00 4.57
1783 4417 4.096231 CCAATCGAAACCTTCATATGCACA 59.904 41.667 0.00 0.00 0.00 4.57
1784 4418 5.221106 CCAATCGAAACCTTCATATGCACAT 60.221 40.000 0.00 0.00 0.00 3.21
1785 4419 5.679734 ATCGAAACCTTCATATGCACATC 57.320 39.130 0.00 0.00 0.00 3.06
1786 4420 4.769688 TCGAAACCTTCATATGCACATCT 58.230 39.130 0.00 0.00 0.00 2.90
1787 4421 5.185454 TCGAAACCTTCATATGCACATCTT 58.815 37.500 0.00 0.00 0.00 2.40
1788 4422 5.294306 TCGAAACCTTCATATGCACATCTTC 59.706 40.000 0.00 0.00 0.00 2.87
1789 4423 5.504665 CGAAACCTTCATATGCACATCTTCC 60.505 44.000 0.00 0.00 0.00 3.46
1790 4424 4.785346 ACCTTCATATGCACATCTTCCT 57.215 40.909 0.00 0.00 0.00 3.36
1791 4425 4.712476 ACCTTCATATGCACATCTTCCTC 58.288 43.478 0.00 0.00 0.00 3.71
1792 4426 4.411540 ACCTTCATATGCACATCTTCCTCT 59.588 41.667 0.00 0.00 0.00 3.69
1793 4427 5.104193 ACCTTCATATGCACATCTTCCTCTT 60.104 40.000 0.00 0.00 0.00 2.85
1794 4428 5.469421 CCTTCATATGCACATCTTCCTCTTC 59.531 44.000 0.00 0.00 0.00 2.87
1795 4429 5.619132 TCATATGCACATCTTCCTCTTCA 57.381 39.130 0.00 0.00 0.00 3.02
1796 4430 5.993055 TCATATGCACATCTTCCTCTTCAA 58.007 37.500 0.00 0.00 0.00 2.69
1797 4431 5.819379 TCATATGCACATCTTCCTCTTCAAC 59.181 40.000 0.00 0.00 0.00 3.18
1798 4432 3.777106 TGCACATCTTCCTCTTCAACT 57.223 42.857 0.00 0.00 0.00 3.16
1799 4433 4.890158 TGCACATCTTCCTCTTCAACTA 57.110 40.909 0.00 0.00 0.00 2.24
1800 4434 4.569943 TGCACATCTTCCTCTTCAACTAC 58.430 43.478 0.00 0.00 0.00 2.73
1801 4435 4.040339 TGCACATCTTCCTCTTCAACTACA 59.960 41.667 0.00 0.00 0.00 2.74
1802 4436 5.181748 GCACATCTTCCTCTTCAACTACAT 58.818 41.667 0.00 0.00 0.00 2.29
1803 4437 6.070824 TGCACATCTTCCTCTTCAACTACATA 60.071 38.462 0.00 0.00 0.00 2.29
1804 4438 6.818644 GCACATCTTCCTCTTCAACTACATAA 59.181 38.462 0.00 0.00 0.00 1.90
1821 4455 9.515020 AACTACATAAGACACAAAACAAACATG 57.485 29.630 0.00 0.00 0.00 3.21
1842 4481 5.825593 TGTCATCTTAACCCTTCAGAACT 57.174 39.130 0.00 0.00 0.00 3.01
1844 4483 7.496346 TGTCATCTTAACCCTTCAGAACTAT 57.504 36.000 0.00 0.00 0.00 2.12
1846 4485 7.400339 TGTCATCTTAACCCTTCAGAACTATCT 59.600 37.037 0.00 0.00 35.88 1.98
1849 4488 7.411486 TCTTAACCCTTCAGAACTATCTCAG 57.589 40.000 0.00 0.00 32.03 3.35
1860 4499 2.180276 ACTATCTCAGTGGCGGTTTCT 58.820 47.619 0.00 0.00 35.62 2.52
1877 4517 1.769026 TCTCGGTCATCCTTCTCCTG 58.231 55.000 0.00 0.00 0.00 3.86
1878 4518 0.103937 CTCGGTCATCCTTCTCCTGC 59.896 60.000 0.00 0.00 0.00 4.85
1888 4528 1.492176 CCTTCTCCTGCCCACATGTAT 59.508 52.381 0.00 0.00 0.00 2.29
1945 4595 3.438781 TGCATGGATTAAACGTCTCCAAC 59.561 43.478 11.59 8.57 42.12 3.77
1951 4601 4.457949 GGATTAAACGTCTCCAACCACAAT 59.542 41.667 0.00 0.00 0.00 2.71
1965 4615 1.343789 CCACAATGGTCATTTGCCACA 59.656 47.619 0.00 0.00 39.03 4.17
1966 4616 2.224233 CCACAATGGTCATTTGCCACAA 60.224 45.455 0.00 0.00 39.03 3.33
1967 4617 3.557475 CCACAATGGTCATTTGCCACAAT 60.557 43.478 0.00 0.00 39.03 2.71
1968 4618 3.433957 CACAATGGTCATTTGCCACAATG 59.566 43.478 0.00 0.00 39.03 2.82
1970 4620 3.880047 ATGGTCATTTGCCACAATGAG 57.120 42.857 3.87 0.00 39.03 2.90
1971 4621 1.894466 TGGTCATTTGCCACAATGAGG 59.106 47.619 3.87 0.00 36.23 3.86
1975 4638 2.173519 CATTTGCCACAATGAGGGTCT 58.826 47.619 0.00 0.00 0.00 3.85
1976 4639 1.619654 TTTGCCACAATGAGGGTCTG 58.380 50.000 0.00 0.00 0.00 3.51
1994 4657 4.640771 TCTGCTTTAGACCCTCATTTGT 57.359 40.909 0.00 0.00 0.00 2.83
1995 4658 4.579869 TCTGCTTTAGACCCTCATTTGTC 58.420 43.478 0.00 0.00 0.00 3.18
1996 4659 4.041567 TCTGCTTTAGACCCTCATTTGTCA 59.958 41.667 0.00 0.00 33.89 3.58
2008 4714 4.152402 CCTCATTTGTCAAGGTACAGAACG 59.848 45.833 0.00 0.00 0.00 3.95
2013 4719 7.822334 TCATTTGTCAAGGTACAGAACGATATT 59.178 33.333 0.00 0.00 0.00 1.28
2017 4723 7.383687 TGTCAAGGTACAGAACGATATTTCTT 58.616 34.615 0.00 0.00 33.31 2.52
2053 4759 4.566545 TTGTCTAAACACAAGCACATGG 57.433 40.909 0.00 0.00 34.35 3.66
2054 4760 3.550820 TGTCTAAACACAAGCACATGGT 58.449 40.909 0.00 0.00 0.00 3.55
2068 4774 2.026356 CACATGGTTGATAGGGTGGTCA 60.026 50.000 0.00 0.00 0.00 4.02
2069 4775 2.647299 ACATGGTTGATAGGGTGGTCAA 59.353 45.455 0.00 0.00 32.31 3.18
2070 4776 3.269381 ACATGGTTGATAGGGTGGTCAAT 59.731 43.478 0.00 0.00 36.79 2.57
2074 4780 4.200092 GGTTGATAGGGTGGTCAATTCTC 58.800 47.826 0.00 0.00 36.79 2.87
2084 4790 5.253330 GGTGGTCAATTCTCCATTAGTGAA 58.747 41.667 2.07 0.00 36.09 3.18
2094 4800 7.986085 TTCTCCATTAGTGAAAGGAAAGAAG 57.014 36.000 0.00 0.00 0.00 2.85
2095 4801 7.316393 TCTCCATTAGTGAAAGGAAAGAAGA 57.684 36.000 0.00 0.00 0.00 2.87
2099 4805 9.196139 TCCATTAGTGAAAGGAAAGAAGAAAAA 57.804 29.630 0.00 0.00 0.00 1.94
2100 4806 9.468532 CCATTAGTGAAAGGAAAGAAGAAAAAG 57.531 33.333 0.00 0.00 0.00 2.27
2101 4807 9.468532 CATTAGTGAAAGGAAAGAAGAAAAAGG 57.531 33.333 0.00 0.00 0.00 3.11
2102 4808 8.589701 TTAGTGAAAGGAAAGAAGAAAAAGGT 57.410 30.769 0.00 0.00 0.00 3.50
2103 4809 7.101652 AGTGAAAGGAAAGAAGAAAAAGGTC 57.898 36.000 0.00 0.00 0.00 3.85
2104 4810 6.663523 AGTGAAAGGAAAGAAGAAAAAGGTCA 59.336 34.615 0.00 0.00 0.00 4.02
2105 4811 7.178451 AGTGAAAGGAAAGAAGAAAAAGGTCAA 59.822 33.333 0.00 0.00 0.00 3.18
2106 4812 7.817478 GTGAAAGGAAAGAAGAAAAAGGTCAAA 59.183 33.333 0.00 0.00 0.00 2.69
2107 4813 8.034804 TGAAAGGAAAGAAGAAAAAGGTCAAAG 58.965 33.333 0.00 0.00 0.00 2.77
2108 4814 7.718334 AAGGAAAGAAGAAAAAGGTCAAAGA 57.282 32.000 0.00 0.00 0.00 2.52
2109 4815 7.904558 AGGAAAGAAGAAAAAGGTCAAAGAT 57.095 32.000 0.00 0.00 0.00 2.40
2110 4816 7.720442 AGGAAAGAAGAAAAAGGTCAAAGATG 58.280 34.615 0.00 0.00 0.00 2.90
2111 4817 6.925718 GGAAAGAAGAAAAAGGTCAAAGATGG 59.074 38.462 0.00 0.00 0.00 3.51
2112 4818 6.410942 AAGAAGAAAAAGGTCAAAGATGGG 57.589 37.500 0.00 0.00 0.00 4.00
2113 4819 4.281941 AGAAGAAAAAGGTCAAAGATGGGC 59.718 41.667 0.00 0.00 0.00 5.36
2114 4820 2.899900 AGAAAAAGGTCAAAGATGGGCC 59.100 45.455 0.00 0.00 0.00 5.80
2115 4821 1.256812 AAAAGGTCAAAGATGGGCCG 58.743 50.000 0.00 0.00 0.00 6.13
2116 4822 0.611896 AAAGGTCAAAGATGGGCCGG 60.612 55.000 0.00 0.00 0.00 6.13
2117 4823 1.789576 AAGGTCAAAGATGGGCCGGT 61.790 55.000 1.90 0.00 0.00 5.28
2118 4824 1.749258 GGTCAAAGATGGGCCGGTC 60.749 63.158 1.90 0.00 0.00 4.79
2119 4825 2.106683 GTCAAAGATGGGCCGGTCG 61.107 63.158 1.90 0.00 0.00 4.79
2120 4826 2.824041 CAAAGATGGGCCGGTCGG 60.824 66.667 1.90 4.85 38.57 4.79
2121 4827 3.006728 AAAGATGGGCCGGTCGGA 61.007 61.111 14.15 0.00 37.50 4.55
2122 4828 3.325201 AAAGATGGGCCGGTCGGAC 62.325 63.158 14.15 10.58 44.33 4.79
2141 4847 2.647158 GGACTGTCCGGACACCTCC 61.647 68.421 33.23 30.60 36.21 4.30
2166 4872 2.107378 TCTTTCACACATGGCTGGGTTA 59.893 45.455 0.00 0.00 36.68 2.85
2182 4932 1.737793 GGTTAGTGGATTTGCGGACAG 59.262 52.381 0.00 0.00 0.00 3.51
2199 4949 2.676471 GCCATGGCAAACGGAGGT 60.676 61.111 32.08 0.00 41.49 3.85
2205 4955 1.475403 TGGCAAACGGAGGTTTTTGA 58.525 45.000 0.00 0.00 43.69 2.69
2216 4966 2.548480 GAGGTTTTTGAGGACTCGGTTG 59.452 50.000 0.00 0.00 0.00 3.77
2220 4970 2.543777 TTTGAGGACTCGGTTGAAGG 57.456 50.000 0.00 0.00 0.00 3.46
2221 4971 0.034896 TTGAGGACTCGGTTGAAGGC 59.965 55.000 0.00 0.00 0.00 4.35
2222 4972 0.832135 TGAGGACTCGGTTGAAGGCT 60.832 55.000 0.00 0.00 0.00 4.58
2223 4973 0.321996 GAGGACTCGGTTGAAGGCTT 59.678 55.000 0.00 0.00 0.00 4.35
2224 4974 0.321996 AGGACTCGGTTGAAGGCTTC 59.678 55.000 20.27 20.27 0.00 3.86
2226 4976 1.270893 GGACTCGGTTGAAGGCTTCTT 60.271 52.381 26.26 3.81 0.00 2.52
2227 4977 2.495084 GACTCGGTTGAAGGCTTCTTT 58.505 47.619 26.26 4.47 0.00 2.52
2228 4978 2.879026 GACTCGGTTGAAGGCTTCTTTT 59.121 45.455 26.26 5.46 0.00 2.27
2229 4979 2.618709 ACTCGGTTGAAGGCTTCTTTTG 59.381 45.455 26.26 14.47 0.00 2.44
2230 4980 2.618709 CTCGGTTGAAGGCTTCTTTTGT 59.381 45.455 26.26 0.00 0.00 2.83
2233 4983 3.606153 CGGTTGAAGGCTTCTTTTGTACG 60.606 47.826 26.26 16.46 0.00 3.67
2234 4984 3.314357 GGTTGAAGGCTTCTTTTGTACGT 59.686 43.478 26.26 0.00 0.00 3.57
2235 4985 4.512571 GGTTGAAGGCTTCTTTTGTACGTA 59.487 41.667 26.26 0.70 0.00 3.57
2238 4988 4.933400 TGAAGGCTTCTTTTGTACGTATCC 59.067 41.667 26.26 0.00 0.00 2.59
2239 4989 4.546829 AGGCTTCTTTTGTACGTATCCA 57.453 40.909 0.00 0.00 0.00 3.41
2240 4990 4.251268 AGGCTTCTTTTGTACGTATCCAC 58.749 43.478 0.00 0.00 0.00 4.02
2241 4991 3.998341 GGCTTCTTTTGTACGTATCCACA 59.002 43.478 0.00 0.00 0.00 4.17
2242 4992 4.142966 GGCTTCTTTTGTACGTATCCACAC 60.143 45.833 0.00 0.00 0.00 3.82
2243 4993 4.449743 GCTTCTTTTGTACGTATCCACACA 59.550 41.667 0.00 0.00 0.00 3.72
2282 5033 7.531857 AGATATATGAGGACGATTTGAGTGT 57.468 36.000 0.00 0.00 0.00 3.55
2283 5034 7.598278 AGATATATGAGGACGATTTGAGTGTC 58.402 38.462 0.00 0.00 0.00 3.67
2284 5035 5.860941 ATATGAGGACGATTTGAGTGTCT 57.139 39.130 0.00 0.00 33.21 3.41
2285 5036 3.303881 TGAGGACGATTTGAGTGTCTG 57.696 47.619 0.00 0.00 33.21 3.51
2286 5037 2.029020 TGAGGACGATTTGAGTGTCTGG 60.029 50.000 0.00 0.00 33.21 3.86
2287 5038 1.971357 AGGACGATTTGAGTGTCTGGT 59.029 47.619 0.00 0.00 33.21 4.00
2288 5039 2.368875 AGGACGATTTGAGTGTCTGGTT 59.631 45.455 0.00 0.00 33.21 3.67
2289 5040 2.480419 GGACGATTTGAGTGTCTGGTTG 59.520 50.000 0.00 0.00 33.21 3.77
2290 5041 3.390135 GACGATTTGAGTGTCTGGTTGA 58.610 45.455 0.00 0.00 0.00 3.18
2291 5042 3.804036 ACGATTTGAGTGTCTGGTTGAA 58.196 40.909 0.00 0.00 0.00 2.69
2292 5043 3.809832 ACGATTTGAGTGTCTGGTTGAAG 59.190 43.478 0.00 0.00 0.00 3.02
2293 5044 4.058124 CGATTTGAGTGTCTGGTTGAAGA 58.942 43.478 0.00 0.00 0.00 2.87
2294 5045 4.084328 CGATTTGAGTGTCTGGTTGAAGAC 60.084 45.833 0.00 0.00 45.70 3.01
2308 5059 5.429130 GGTTGAAGACCCTCTTACATAAGG 58.571 45.833 0.00 0.00 43.06 2.69
2309 5060 5.189145 GGTTGAAGACCCTCTTACATAAGGA 59.811 44.000 0.00 0.00 43.06 3.36
2310 5061 6.126739 GGTTGAAGACCCTCTTACATAAGGAT 60.127 42.308 0.00 0.00 43.06 3.24
2311 5062 6.732896 TGAAGACCCTCTTACATAAGGATC 57.267 41.667 0.00 0.00 36.73 3.36
2312 5063 6.444704 TGAAGACCCTCTTACATAAGGATCT 58.555 40.000 0.00 0.00 36.73 2.75
2313 5064 6.325028 TGAAGACCCTCTTACATAAGGATCTG 59.675 42.308 0.00 0.00 36.73 2.90
2314 5065 4.591072 AGACCCTCTTACATAAGGATCTGC 59.409 45.833 0.00 0.00 34.35 4.26
2315 5066 4.298626 ACCCTCTTACATAAGGATCTGCA 58.701 43.478 0.00 0.00 34.35 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.002879 AGCTACTCCTTTACATAATACTCCGA 58.997 38.462 0.00 0.00 0.00 4.55
31 32 6.869388 GCCAGCTACTCCTTTACATAATACTC 59.131 42.308 0.00 0.00 0.00 2.59
32 33 6.326583 TGCCAGCTACTCCTTTACATAATACT 59.673 38.462 0.00 0.00 0.00 2.12
33 34 6.522054 TGCCAGCTACTCCTTTACATAATAC 58.478 40.000 0.00 0.00 0.00 1.89
85 111 5.743636 TGCCCAGCAGAGAATAAAATTTT 57.256 34.783 8.75 8.75 33.32 1.82
166 192 9.297586 CAACCTCATCATCATCAAACATAAAAG 57.702 33.333 0.00 0.00 0.00 2.27
204 233 5.569413 CACAAGTAATTAGATCAAACGGGC 58.431 41.667 0.00 0.00 0.00 6.13
327 358 0.179048 TCTATGCTGCATTGGTCGGG 60.179 55.000 21.56 3.40 0.00 5.14
354 386 3.525800 ACCACCAGACCTATGCTTTTT 57.474 42.857 0.00 0.00 0.00 1.94
356 388 3.587506 AGTAACCACCAGACCTATGCTTT 59.412 43.478 0.00 0.00 0.00 3.51
360 392 2.501723 AGCAGTAACCACCAGACCTATG 59.498 50.000 0.00 0.00 0.00 2.23
380 412 1.683365 CACATGCCCCCTTTCCCAG 60.683 63.158 0.00 0.00 0.00 4.45
383 422 1.182667 GTAACACATGCCCCCTTTCC 58.817 55.000 0.00 0.00 0.00 3.13
388 427 0.887933 CACAAGTAACACATGCCCCC 59.112 55.000 0.00 0.00 0.00 5.40
446 498 6.938030 ACTGTTCTGTATAATTTTCGGTGGAA 59.062 34.615 0.00 0.00 0.00 3.53
447 499 6.469410 ACTGTTCTGTATAATTTTCGGTGGA 58.531 36.000 0.00 0.00 0.00 4.02
469 521 3.462205 ACTAAGGTTGGGAACAGGAAACT 59.538 43.478 0.00 0.00 44.54 2.66
470 522 3.828921 ACTAAGGTTGGGAACAGGAAAC 58.171 45.455 0.00 0.00 44.54 2.78
472 524 3.827722 CAACTAAGGTTGGGAACAGGAA 58.172 45.455 1.43 0.00 46.37 3.36
520 572 1.662608 CGAGACAGCAGTGTGGACT 59.337 57.895 0.00 0.00 36.88 3.85
521 573 1.373497 CCGAGACAGCAGTGTGGAC 60.373 63.158 0.00 0.00 36.88 4.02
522 574 3.051210 CCGAGACAGCAGTGTGGA 58.949 61.111 0.00 0.00 36.88 4.02
540 592 2.041405 GACAGGGGAGAGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
561 615 0.521867 TATTGCCGACGACGAGAACG 60.522 55.000 9.28 1.79 42.66 3.95
572 626 1.683025 TCCCCACTCGTATTGCCGA 60.683 57.895 0.00 0.00 35.22 5.54
573 627 1.520787 GTCCCCACTCGTATTGCCG 60.521 63.158 0.00 0.00 0.00 5.69
575 629 0.462047 CAGGTCCCCACTCGTATTGC 60.462 60.000 0.00 0.00 0.00 3.56
637 704 1.841302 TTGCCTTCATCGCCTCCACT 61.841 55.000 0.00 0.00 0.00 4.00
675 742 2.874751 CGCAAACCCCTAAAGCGG 59.125 61.111 0.00 0.00 44.20 5.52
679 1728 0.537828 GTGGGACGCAAACCCCTAAA 60.538 55.000 0.00 0.00 46.21 1.85
698 1747 7.664758 TGGATGATAGTGACATGATAGTTCAG 58.335 38.462 0.00 0.00 34.73 3.02
709 1921 2.420547 GCTGCCTTGGATGATAGTGACA 60.421 50.000 0.00 0.00 0.00 3.58
710 1922 2.216898 GCTGCCTTGGATGATAGTGAC 58.783 52.381 0.00 0.00 0.00 3.67
712 1924 2.336945 TGCTGCCTTGGATGATAGTG 57.663 50.000 0.00 0.00 0.00 2.74
803 3416 1.532523 TGATTGCTGGAATCAACGCA 58.467 45.000 20.24 0.00 46.19 5.24
852 3465 2.470057 TTGGATTTTGGGGATAGGCC 57.530 50.000 0.00 0.00 0.00 5.19
894 3508 6.207810 AGGCTTCTTATATAGTCGAAGGTGAG 59.792 42.308 14.85 0.00 34.82 3.51
925 3539 2.022625 TGGAGATGACAGGAGGGAGATT 60.023 50.000 0.00 0.00 0.00 2.40
944 3558 1.273327 GAAATGGGGAGCTGTGTTTGG 59.727 52.381 0.00 0.00 0.00 3.28
956 3570 3.389656 GGAGGAGTAAGAGAGAAATGGGG 59.610 52.174 0.00 0.00 0.00 4.96
959 3573 6.379703 TCTTCTGGAGGAGTAAGAGAGAAATG 59.620 42.308 0.00 0.00 0.00 2.32
961 3575 5.893500 TCTTCTGGAGGAGTAAGAGAGAAA 58.106 41.667 0.00 0.00 0.00 2.52
1038 3653 0.325110 CCAGGAGGAGAAGCAGGAGA 60.325 60.000 0.00 0.00 36.89 3.71
1075 3690 6.374417 ACTAAGGCTATCAGGAGAAACAAA 57.626 37.500 0.00 0.00 0.00 2.83
1082 3697 6.716934 TGAAGTTACTAAGGCTATCAGGAG 57.283 41.667 0.00 0.00 0.00 3.69
1090 3705 6.044054 AGGTTAGGTTTGAAGTTACTAAGGCT 59.956 38.462 0.00 0.00 0.00 4.58
1092 3707 7.447594 TCAGGTTAGGTTTGAAGTTACTAAGG 58.552 38.462 0.00 0.00 0.00 2.69
1094 3709 8.146412 GTCTCAGGTTAGGTTTGAAGTTACTAA 58.854 37.037 0.00 0.00 0.00 2.24
1255 3881 4.357947 GTGCAGTCGCCGGAGTCA 62.358 66.667 5.05 0.00 37.32 3.41
1357 3983 7.469537 ACTAGAGTAGCACAGAACTGTAATT 57.530 36.000 7.15 0.00 42.83 1.40
1391 4017 6.070538 TCCAACAAAATCCAAGGTCAAAAAGA 60.071 34.615 0.00 0.00 0.00 2.52
1414 4042 2.354821 GCCATATTCGTGTGAACCTTCC 59.645 50.000 0.00 0.00 36.81 3.46
1431 4059 0.321653 GTCCACTGAGTTTCGGCCAT 60.322 55.000 2.24 0.00 0.00 4.40
1452 4080 0.116342 TCAGAACTGGGCCCTAGTGA 59.884 55.000 25.70 15.38 0.00 3.41
1461 4089 7.519008 GCGATACAAAATAATCTCAGAACTGGG 60.519 40.741 1.93 0.00 0.00 4.45
1553 4183 2.816087 CCTGTTCTGAGGGACAAACATG 59.184 50.000 0.00 0.00 33.14 3.21
1555 4185 2.104792 CTCCTGTTCTGAGGGACAAACA 59.895 50.000 0.00 0.00 33.41 2.83
1560 4190 3.315749 CGTATACTCCTGTTCTGAGGGAC 59.684 52.174 0.56 0.00 34.06 4.46
1564 4194 3.066900 CCACCGTATACTCCTGTTCTGAG 59.933 52.174 0.56 0.00 35.92 3.35
1604 4238 5.229423 TGCTAATCTGTTTTGGATGTTTGC 58.771 37.500 0.00 0.00 0.00 3.68
1608 4242 7.054491 ACTTTTGCTAATCTGTTTTGGATGT 57.946 32.000 0.00 0.00 0.00 3.06
1619 4253 4.452455 CACTTGTCGGACTTTTGCTAATCT 59.548 41.667 9.88 0.00 0.00 2.40
1621 4255 3.502211 CCACTTGTCGGACTTTTGCTAAT 59.498 43.478 9.88 0.00 0.00 1.73
1630 4264 1.071228 GTTAACCCCACTTGTCGGACT 59.929 52.381 9.88 0.00 0.00 3.85
1632 4266 0.397564 GGTTAACCCCACTTGTCGGA 59.602 55.000 14.16 0.00 0.00 4.55
1653 4287 4.178956 TCTGGCTCTACCCAAACTTTTT 57.821 40.909 0.00 0.00 37.83 1.94
1654 4288 3.876309 TCTGGCTCTACCCAAACTTTT 57.124 42.857 0.00 0.00 37.83 2.27
1655 4289 3.589288 AGATCTGGCTCTACCCAAACTTT 59.411 43.478 0.00 0.00 37.83 2.66
1656 4290 3.185455 AGATCTGGCTCTACCCAAACTT 58.815 45.455 0.00 0.00 37.83 2.66
1657 4291 2.839228 AGATCTGGCTCTACCCAAACT 58.161 47.619 0.00 0.00 37.83 2.66
1658 4292 4.162509 ACTTAGATCTGGCTCTACCCAAAC 59.837 45.833 5.18 0.00 37.83 2.93
1659 4293 4.362677 ACTTAGATCTGGCTCTACCCAAA 58.637 43.478 5.18 0.00 37.83 3.28
1660 4294 3.961408 GACTTAGATCTGGCTCTACCCAA 59.039 47.826 5.18 0.00 37.83 4.12
1661 4295 3.205507 AGACTTAGATCTGGCTCTACCCA 59.794 47.826 5.18 0.00 37.83 4.51
1662 4296 3.839778 AGACTTAGATCTGGCTCTACCC 58.160 50.000 5.18 0.00 37.83 3.69
1663 4297 4.038642 CCAAGACTTAGATCTGGCTCTACC 59.961 50.000 5.18 0.00 39.84 3.18
1664 4298 4.500716 GCCAAGACTTAGATCTGGCTCTAC 60.501 50.000 5.18 0.00 38.66 2.59
1665 4299 3.639094 GCCAAGACTTAGATCTGGCTCTA 59.361 47.826 5.18 0.00 38.66 2.43
1666 4300 2.433970 GCCAAGACTTAGATCTGGCTCT 59.566 50.000 5.18 0.00 38.66 4.09
1667 4301 2.433970 AGCCAAGACTTAGATCTGGCTC 59.566 50.000 14.79 2.63 43.69 4.70
1668 4302 2.476199 AGCCAAGACTTAGATCTGGCT 58.524 47.619 14.79 14.79 42.99 4.75
1669 4303 2.998316 AGCCAAGACTTAGATCTGGC 57.002 50.000 5.18 8.67 40.41 4.85
1670 4304 7.531857 TTATCTAGCCAAGACTTAGATCTGG 57.468 40.000 5.18 0.00 36.93 3.86
1671 4305 7.593273 CGTTTATCTAGCCAAGACTTAGATCTG 59.407 40.741 5.18 0.00 36.93 2.90
1672 4306 7.653647 CGTTTATCTAGCCAAGACTTAGATCT 58.346 38.462 0.00 0.00 36.93 2.75
1673 4307 6.363896 GCGTTTATCTAGCCAAGACTTAGATC 59.636 42.308 2.17 0.00 36.93 2.75
1674 4308 6.217294 GCGTTTATCTAGCCAAGACTTAGAT 58.783 40.000 4.14 4.14 36.93 1.98
1675 4309 5.589192 GCGTTTATCTAGCCAAGACTTAGA 58.411 41.667 0.00 0.00 36.93 2.10
1676 4310 5.891810 GCGTTTATCTAGCCAAGACTTAG 57.108 43.478 0.00 0.00 36.93 2.18
1699 4333 4.523173 TCATAACTACCCTCTTATCGCAGG 59.477 45.833 0.00 0.00 0.00 4.85
1700 4334 5.707242 TCATAACTACCCTCTTATCGCAG 57.293 43.478 0.00 0.00 0.00 5.18
1701 4335 5.221382 GGTTCATAACTACCCTCTTATCGCA 60.221 44.000 0.00 0.00 0.00 5.10
1702 4336 5.010820 AGGTTCATAACTACCCTCTTATCGC 59.989 44.000 0.00 0.00 34.90 4.58
1703 4337 6.651975 AGGTTCATAACTACCCTCTTATCG 57.348 41.667 0.00 0.00 34.90 2.92
1704 4338 7.711339 CACAAGGTTCATAACTACCCTCTTATC 59.289 40.741 0.00 0.00 34.90 1.75
1705 4339 7.182206 ACACAAGGTTCATAACTACCCTCTTAT 59.818 37.037 0.00 0.00 34.90 1.73
1706 4340 6.499350 ACACAAGGTTCATAACTACCCTCTTA 59.501 38.462 0.00 0.00 34.90 2.10
1707 4341 5.309806 ACACAAGGTTCATAACTACCCTCTT 59.690 40.000 0.00 0.00 34.90 2.85
1708 4342 4.844655 ACACAAGGTTCATAACTACCCTCT 59.155 41.667 0.00 0.00 34.90 3.69
1709 4343 5.161943 ACACAAGGTTCATAACTACCCTC 57.838 43.478 0.00 0.00 34.90 4.30
1710 4344 5.072600 TCAACACAAGGTTCATAACTACCCT 59.927 40.000 0.00 0.00 37.72 4.34
1711 4345 5.310451 TCAACACAAGGTTCATAACTACCC 58.690 41.667 0.00 0.00 37.72 3.69
1712 4346 7.448748 AATCAACACAAGGTTCATAACTACC 57.551 36.000 0.00 0.00 37.72 3.18
1713 4347 8.564574 TCAAATCAACACAAGGTTCATAACTAC 58.435 33.333 0.00 0.00 37.72 2.73
1714 4348 8.684386 TCAAATCAACACAAGGTTCATAACTA 57.316 30.769 0.00 0.00 37.72 2.24
1715 4349 7.255590 CCTCAAATCAACACAAGGTTCATAACT 60.256 37.037 0.00 0.00 37.72 2.24
1716 4350 6.863126 CCTCAAATCAACACAAGGTTCATAAC 59.137 38.462 0.00 0.00 37.72 1.89
1717 4351 6.015519 CCCTCAAATCAACACAAGGTTCATAA 60.016 38.462 0.00 0.00 37.72 1.90
1718 4352 5.476599 CCCTCAAATCAACACAAGGTTCATA 59.523 40.000 0.00 0.00 37.72 2.15
1719 4353 4.281688 CCCTCAAATCAACACAAGGTTCAT 59.718 41.667 0.00 0.00 37.72 2.57
1720 4354 3.636300 CCCTCAAATCAACACAAGGTTCA 59.364 43.478 0.00 0.00 37.72 3.18
1721 4355 3.005791 CCCCTCAAATCAACACAAGGTTC 59.994 47.826 0.00 0.00 37.72 3.62
1722 4356 2.965147 CCCCTCAAATCAACACAAGGTT 59.035 45.455 0.00 0.00 41.47 3.50
1723 4357 2.176798 TCCCCTCAAATCAACACAAGGT 59.823 45.455 0.00 0.00 0.00 3.50
1724 4358 2.875296 TCCCCTCAAATCAACACAAGG 58.125 47.619 0.00 0.00 0.00 3.61
1725 4359 4.935352 TTTCCCCTCAAATCAACACAAG 57.065 40.909 0.00 0.00 0.00 3.16
1726 4360 5.683876 TTTTTCCCCTCAAATCAACACAA 57.316 34.783 0.00 0.00 0.00 3.33
1745 4379 7.438160 GGTTTCGATTGGATTTTGACTCTTTTT 59.562 33.333 0.00 0.00 0.00 1.94
1746 4380 6.923508 GGTTTCGATTGGATTTTGACTCTTTT 59.076 34.615 0.00 0.00 0.00 2.27
1747 4381 6.265422 AGGTTTCGATTGGATTTTGACTCTTT 59.735 34.615 0.00 0.00 0.00 2.52
1748 4382 5.770162 AGGTTTCGATTGGATTTTGACTCTT 59.230 36.000 0.00 0.00 0.00 2.85
1749 4383 5.316987 AGGTTTCGATTGGATTTTGACTCT 58.683 37.500 0.00 0.00 0.00 3.24
1750 4384 5.629079 AGGTTTCGATTGGATTTTGACTC 57.371 39.130 0.00 0.00 0.00 3.36
1751 4385 5.534654 TGAAGGTTTCGATTGGATTTTGACT 59.465 36.000 0.00 0.00 0.00 3.41
1752 4386 5.768317 TGAAGGTTTCGATTGGATTTTGAC 58.232 37.500 0.00 0.00 0.00 3.18
1753 4387 6.588719 ATGAAGGTTTCGATTGGATTTTGA 57.411 33.333 0.00 0.00 0.00 2.69
1754 4388 7.043192 GCATATGAAGGTTTCGATTGGATTTTG 60.043 37.037 6.97 0.00 0.00 2.44
1755 4389 6.980397 GCATATGAAGGTTTCGATTGGATTTT 59.020 34.615 6.97 0.00 0.00 1.82
1756 4390 6.096705 TGCATATGAAGGTTTCGATTGGATTT 59.903 34.615 6.97 0.00 0.00 2.17
1757 4391 5.593909 TGCATATGAAGGTTTCGATTGGATT 59.406 36.000 6.97 0.00 0.00 3.01
1758 4392 5.009010 GTGCATATGAAGGTTTCGATTGGAT 59.991 40.000 6.97 0.00 0.00 3.41
1759 4393 4.335315 GTGCATATGAAGGTTTCGATTGGA 59.665 41.667 6.97 0.00 0.00 3.53
1760 4394 4.096231 TGTGCATATGAAGGTTTCGATTGG 59.904 41.667 6.97 0.00 0.00 3.16
1761 4395 5.233957 TGTGCATATGAAGGTTTCGATTG 57.766 39.130 6.97 0.00 0.00 2.67
1762 4396 5.824624 AGATGTGCATATGAAGGTTTCGATT 59.175 36.000 6.97 0.00 0.00 3.34
1763 4397 5.371526 AGATGTGCATATGAAGGTTTCGAT 58.628 37.500 6.97 0.00 0.00 3.59
1764 4398 4.769688 AGATGTGCATATGAAGGTTTCGA 58.230 39.130 6.97 0.00 0.00 3.71
1765 4399 5.490139 AAGATGTGCATATGAAGGTTTCG 57.510 39.130 6.97 0.00 0.00 3.46
1766 4400 5.591877 AGGAAGATGTGCATATGAAGGTTTC 59.408 40.000 6.97 2.79 0.00 2.78
1767 4401 5.513233 AGGAAGATGTGCATATGAAGGTTT 58.487 37.500 6.97 0.00 0.00 3.27
1768 4402 5.104193 AGAGGAAGATGTGCATATGAAGGTT 60.104 40.000 6.97 0.00 0.00 3.50
1769 4403 4.411540 AGAGGAAGATGTGCATATGAAGGT 59.588 41.667 6.97 0.00 0.00 3.50
1770 4404 4.970711 AGAGGAAGATGTGCATATGAAGG 58.029 43.478 6.97 0.00 0.00 3.46
1771 4405 6.053650 TGAAGAGGAAGATGTGCATATGAAG 58.946 40.000 6.97 0.00 0.00 3.02
1772 4406 5.993055 TGAAGAGGAAGATGTGCATATGAA 58.007 37.500 6.97 0.00 0.00 2.57
1773 4407 5.619132 TGAAGAGGAAGATGTGCATATGA 57.381 39.130 6.97 0.00 0.00 2.15
1774 4408 5.821470 AGTTGAAGAGGAAGATGTGCATATG 59.179 40.000 0.00 0.00 0.00 1.78
1775 4409 5.999044 AGTTGAAGAGGAAGATGTGCATAT 58.001 37.500 0.00 0.00 0.00 1.78
1776 4410 5.426689 AGTTGAAGAGGAAGATGTGCATA 57.573 39.130 0.00 0.00 0.00 3.14
1777 4411 4.298103 AGTTGAAGAGGAAGATGTGCAT 57.702 40.909 0.00 0.00 0.00 3.96
1778 4412 3.777106 AGTTGAAGAGGAAGATGTGCA 57.223 42.857 0.00 0.00 0.00 4.57
1779 4413 4.569943 TGTAGTTGAAGAGGAAGATGTGC 58.430 43.478 0.00 0.00 0.00 4.57
1780 4414 8.253810 TCTTATGTAGTTGAAGAGGAAGATGTG 58.746 37.037 0.00 0.00 0.00 3.21
1781 4415 8.254508 GTCTTATGTAGTTGAAGAGGAAGATGT 58.745 37.037 0.00 0.00 30.04 3.06
1782 4416 8.253810 TGTCTTATGTAGTTGAAGAGGAAGATG 58.746 37.037 0.00 0.00 30.04 2.90
1783 4417 8.254508 GTGTCTTATGTAGTTGAAGAGGAAGAT 58.745 37.037 0.00 0.00 30.04 2.40
1784 4418 7.232737 TGTGTCTTATGTAGTTGAAGAGGAAGA 59.767 37.037 0.00 0.00 30.04 2.87
1785 4419 7.378966 TGTGTCTTATGTAGTTGAAGAGGAAG 58.621 38.462 0.00 0.00 30.04 3.46
1786 4420 7.297936 TGTGTCTTATGTAGTTGAAGAGGAA 57.702 36.000 0.00 0.00 30.04 3.36
1787 4421 6.911250 TGTGTCTTATGTAGTTGAAGAGGA 57.089 37.500 0.00 0.00 30.04 3.71
1788 4422 7.962964 TTTGTGTCTTATGTAGTTGAAGAGG 57.037 36.000 0.00 0.00 30.04 3.69
1789 4423 8.826710 TGTTTTGTGTCTTATGTAGTTGAAGAG 58.173 33.333 0.00 0.00 30.04 2.85
1790 4424 8.725405 TGTTTTGTGTCTTATGTAGTTGAAGA 57.275 30.769 0.00 0.00 0.00 2.87
1791 4425 9.781834 TTTGTTTTGTGTCTTATGTAGTTGAAG 57.218 29.630 0.00 0.00 0.00 3.02
1792 4426 9.562583 GTTTGTTTTGTGTCTTATGTAGTTGAA 57.437 29.630 0.00 0.00 0.00 2.69
1793 4427 8.731605 TGTTTGTTTTGTGTCTTATGTAGTTGA 58.268 29.630 0.00 0.00 0.00 3.18
1794 4428 8.903570 TGTTTGTTTTGTGTCTTATGTAGTTG 57.096 30.769 0.00 0.00 0.00 3.16
1795 4429 9.515020 CATGTTTGTTTTGTGTCTTATGTAGTT 57.485 29.630 0.00 0.00 0.00 2.24
1796 4430 8.682710 ACATGTTTGTTTTGTGTCTTATGTAGT 58.317 29.630 0.00 0.00 29.55 2.73
1797 4431 9.169468 GACATGTTTGTTTTGTGTCTTATGTAG 57.831 33.333 0.00 0.00 35.79 2.74
1798 4432 8.678199 TGACATGTTTGTTTTGTGTCTTATGTA 58.322 29.630 0.00 0.00 39.78 2.29
1799 4433 7.542890 TGACATGTTTGTTTTGTGTCTTATGT 58.457 30.769 0.00 0.00 39.78 2.29
1800 4434 7.984002 TGACATGTTTGTTTTGTGTCTTATG 57.016 32.000 0.00 0.00 39.78 1.90
1801 4435 8.632679 AGATGACATGTTTGTTTTGTGTCTTAT 58.367 29.630 0.00 0.00 39.78 1.73
1802 4436 7.995289 AGATGACATGTTTGTTTTGTGTCTTA 58.005 30.769 0.00 0.00 39.78 2.10
1803 4437 6.866480 AGATGACATGTTTGTTTTGTGTCTT 58.134 32.000 0.00 0.00 39.78 3.01
1804 4438 6.455360 AGATGACATGTTTGTTTTGTGTCT 57.545 33.333 0.00 0.00 39.78 3.41
1821 4455 7.787028 AGATAGTTCTGAAGGGTTAAGATGAC 58.213 38.462 0.00 0.00 0.00 3.06
1842 4481 1.134367 CGAGAAACCGCCACTGAGATA 59.866 52.381 0.00 0.00 0.00 1.98
1844 4483 1.289066 CGAGAAACCGCCACTGAGA 59.711 57.895 0.00 0.00 0.00 3.27
1846 4485 2.342279 CCGAGAAACCGCCACTGA 59.658 61.111 0.00 0.00 0.00 3.41
1849 4488 1.359459 GATGACCGAGAAACCGCCAC 61.359 60.000 0.00 0.00 0.00 5.01
1860 4499 1.330655 GGCAGGAGAAGGATGACCGA 61.331 60.000 0.00 0.00 41.83 4.69
1877 4517 5.574891 TCAATTACAACATACATGTGGGC 57.425 39.130 9.11 0.00 41.61 5.36
1878 4518 7.488792 CACAATCAATTACAACATACATGTGGG 59.511 37.037 9.11 2.58 41.61 4.61
1888 4528 8.249638 CACCCAATATCACAATCAATTACAACA 58.750 33.333 0.00 0.00 0.00 3.33
1923 4573 3.342377 TGGAGACGTTTAATCCATGCA 57.658 42.857 8.21 0.00 38.19 3.96
1945 4595 1.343789 TGTGGCAAATGACCATTGTGG 59.656 47.619 0.00 0.00 45.02 4.17
1951 4601 1.894466 CCTCATTGTGGCAAATGACCA 59.106 47.619 16.07 0.00 40.72 4.02
1961 4611 1.915141 AAAGCAGACCCTCATTGTGG 58.085 50.000 0.00 0.00 0.00 4.17
1963 4613 3.944087 GTCTAAAGCAGACCCTCATTGT 58.056 45.455 0.00 0.00 46.94 2.71
1975 4638 4.365514 TGACAAATGAGGGTCTAAAGCA 57.634 40.909 0.00 0.00 35.11 3.91
1976 4639 4.156739 CCTTGACAAATGAGGGTCTAAAGC 59.843 45.833 0.00 0.00 35.11 3.51
1988 4651 5.862924 ATCGTTCTGTACCTTGACAAATG 57.137 39.130 0.00 0.00 0.00 2.32
1989 4652 8.561738 AAATATCGTTCTGTACCTTGACAAAT 57.438 30.769 0.00 0.00 0.00 2.32
1990 4653 7.876068 AGAAATATCGTTCTGTACCTTGACAAA 59.124 33.333 0.00 0.00 36.48 2.83
1991 4654 7.383687 AGAAATATCGTTCTGTACCTTGACAA 58.616 34.615 0.00 0.00 36.48 3.18
1993 4656 7.829378 AAGAAATATCGTTCTGTACCTTGAC 57.171 36.000 0.00 0.00 37.90 3.18
1996 4659 9.543783 GGATTAAGAAATATCGTTCTGTACCTT 57.456 33.333 0.00 0.00 37.90 3.50
2036 4742 4.566545 TCAACCATGTGCTTGTGTTTAG 57.433 40.909 0.00 0.00 0.00 1.85
2038 4744 4.022068 CCTATCAACCATGTGCTTGTGTTT 60.022 41.667 0.00 0.00 0.00 2.83
2041 4747 2.424601 CCCTATCAACCATGTGCTTGTG 59.575 50.000 0.00 0.00 0.00 3.33
2053 4759 4.200092 GGAGAATTGACCACCCTATCAAC 58.800 47.826 0.00 0.00 37.64 3.18
2054 4760 3.849574 TGGAGAATTGACCACCCTATCAA 59.150 43.478 0.00 0.00 39.09 2.57
2068 4774 8.940397 TTCTTTCCTTTCACTAATGGAGAATT 57.060 30.769 0.00 0.00 39.40 2.17
2069 4775 8.386264 TCTTCTTTCCTTTCACTAATGGAGAAT 58.614 33.333 0.00 0.00 39.40 2.40
2070 4776 7.745717 TCTTCTTTCCTTTCACTAATGGAGAA 58.254 34.615 0.00 0.00 39.40 2.87
2074 4780 9.468532 CTTTTTCTTCTTTCCTTTCACTAATGG 57.531 33.333 0.00 0.00 0.00 3.16
2084 4790 7.718334 TCTTTGACCTTTTTCTTCTTTCCTT 57.282 32.000 0.00 0.00 0.00 3.36
2094 4800 2.352715 CGGCCCATCTTTGACCTTTTTC 60.353 50.000 0.00 0.00 0.00 2.29
2095 4801 1.618343 CGGCCCATCTTTGACCTTTTT 59.382 47.619 0.00 0.00 0.00 1.94
2099 4805 2.198304 GACCGGCCCATCTTTGACCT 62.198 60.000 0.00 0.00 0.00 3.85
2100 4806 1.749258 GACCGGCCCATCTTTGACC 60.749 63.158 0.00 0.00 0.00 4.02
2101 4807 2.106683 CGACCGGCCCATCTTTGAC 61.107 63.158 0.00 0.00 0.00 3.18
2102 4808 2.267642 CGACCGGCCCATCTTTGA 59.732 61.111 0.00 0.00 0.00 2.69
2103 4809 2.824041 CCGACCGGCCCATCTTTG 60.824 66.667 0.00 0.00 0.00 2.77
2104 4810 3.006728 TCCGACCGGCCCATCTTT 61.007 61.111 0.00 0.00 34.68 2.52
2105 4811 3.782443 GTCCGACCGGCCCATCTT 61.782 66.667 0.00 0.00 34.68 2.40
2123 4829 2.647158 GGAGGTGTCCGGACAGTCC 61.647 68.421 34.50 34.50 42.74 3.85
2124 4830 2.971452 GGAGGTGTCCGGACAGTC 59.029 66.667 37.04 31.71 42.74 3.51
2134 4840 2.285977 GTGTGAAAGAAACGGAGGTGT 58.714 47.619 0.00 0.00 0.00 4.16
2141 4847 2.605338 CCAGCCATGTGTGAAAGAAACG 60.605 50.000 0.00 0.00 0.00 3.60
2166 4872 1.675641 GGCTGTCCGCAAATCCACT 60.676 57.895 0.00 0.00 41.67 4.00
2182 4932 1.815817 AAACCTCCGTTTGCCATGGC 61.816 55.000 30.54 30.54 40.74 4.40
2188 4938 1.679153 TCCTCAAAAACCTCCGTTTGC 59.321 47.619 0.00 0.00 41.42 3.68
2199 4949 3.211045 CCTTCAACCGAGTCCTCAAAAA 58.789 45.455 0.00 0.00 0.00 1.94
2205 4955 0.321996 GAAGCCTTCAACCGAGTCCT 59.678 55.000 0.00 0.00 0.00 3.85
2216 4966 4.933400 TGGATACGTACAAAAGAAGCCTTC 59.067 41.667 0.00 0.00 42.51 3.46
2220 4970 4.449743 TGTGTGGATACGTACAAAAGAAGC 59.550 41.667 0.00 0.00 42.51 3.86
2221 4971 5.694910 AGTGTGTGGATACGTACAAAAGAAG 59.305 40.000 0.00 0.00 36.88 2.85
2222 4972 5.464057 CAGTGTGTGGATACGTACAAAAGAA 59.536 40.000 0.00 0.00 36.88 2.52
2223 4973 4.986034 CAGTGTGTGGATACGTACAAAAGA 59.014 41.667 0.00 0.00 36.88 2.52
2224 4974 4.748102 ACAGTGTGTGGATACGTACAAAAG 59.252 41.667 0.00 0.00 36.88 2.27
2226 4976 4.300803 GACAGTGTGTGGATACGTACAAA 58.699 43.478 0.00 0.00 36.88 2.83
2227 4977 3.305539 GGACAGTGTGTGGATACGTACAA 60.306 47.826 0.00 0.00 36.88 2.41
2228 4978 2.229543 GGACAGTGTGTGGATACGTACA 59.770 50.000 0.00 0.00 42.51 2.90
2229 4979 2.730090 CGGACAGTGTGTGGATACGTAC 60.730 54.545 0.00 0.00 42.51 3.67
2230 4980 1.469703 CGGACAGTGTGTGGATACGTA 59.530 52.381 0.00 0.00 42.51 3.57
2233 4983 0.892755 TCCGGACAGTGTGTGGATAC 59.107 55.000 0.00 0.00 0.00 2.24
2234 4984 1.860641 ATCCGGACAGTGTGTGGATA 58.139 50.000 19.53 0.44 33.11 2.59
2235 4985 1.860641 TATCCGGACAGTGTGTGGAT 58.139 50.000 22.78 22.78 37.11 3.41
2238 4988 5.959618 TCTATATATCCGGACAGTGTGTG 57.040 43.478 6.12 0.00 0.00 3.82
2243 4993 9.967451 CCTCATATATCTATATATCCGGACAGT 57.033 37.037 6.12 0.00 34.56 3.55
2281 5032 8.059120 CTTATGTAAGAGGGTCTTCAACCAGAC 61.059 44.444 0.00 0.00 41.74 3.51
2282 5033 6.070767 CTTATGTAAGAGGGTCTTCAACCAGA 60.071 42.308 0.00 0.00 41.74 3.86
2283 5034 6.109359 CTTATGTAAGAGGGTCTTCAACCAG 58.891 44.000 0.00 0.00 41.74 4.00
2284 5035 5.045869 CCTTATGTAAGAGGGTCTTCAACCA 60.046 44.000 1.42 0.00 41.74 3.67
2285 5036 5.189145 TCCTTATGTAAGAGGGTCTTCAACC 59.811 44.000 1.42 0.00 40.37 3.77
2286 5037 6.295719 TCCTTATGTAAGAGGGTCTTCAAC 57.704 41.667 1.42 0.00 37.89 3.18
2287 5038 7.125792 GATCCTTATGTAAGAGGGTCTTCAA 57.874 40.000 1.42 0.00 39.59 2.69
2288 5039 6.732896 GATCCTTATGTAAGAGGGTCTTCA 57.267 41.667 1.42 0.00 39.59 3.02
2292 5043 4.345257 TGCAGATCCTTATGTAAGAGGGTC 59.655 45.833 1.42 0.00 42.40 4.46
2293 5044 4.298626 TGCAGATCCTTATGTAAGAGGGT 58.701 43.478 1.42 0.00 35.33 4.34
2294 5045 4.963318 TGCAGATCCTTATGTAAGAGGG 57.037 45.455 1.42 0.00 35.33 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.