>input_sequence_84055
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--------------ATGGCGGTTTCGTCGAAGCTTTTCCCGGCCGCCGTCCTTCTCCTGCTTCTCCTCCTGGCCACAGGT
AATTGACTGTTTGTTTCTCCTGATAGCCTTAGTA-------ACTTCAAACCTAACCTGAGACTGATCGTTCTTGATG---
-CGTGCAGAGATGGGGCCTGTGCGGGAGGCGACGGCATGCGAGCACGCTCCGTGCAAGAAGTGCACCGGATCGTGCTTCG
ACCCGGAGGAGTGCGCCATCACGTGCCGGAACGAGGGCTATGACTCCGGCGACTGCACCGGCAGCGGAGCCTACCGCTGC
ACGTGCAGCAAGAATTGCTAG-----------------------------------------------------------
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--------------------------
>chr1B_1_TraesCS1B01G399800
CGTGATCTTAGTTATCAACTTATCATTATCGGAG-------------TATTATGTAAAGGAGTAGCTGGCAA--------
----GTGAACTTGTTAGAAAAATATGCACCAAAATTTTATTCTCTGCTGGGCATTACGTTCTCCAGGTTGAAGTTTGGTT
TAGGTCAGCTCTTCTTCCTGGGCTGGCGTATCTTTTATGTTTGATGATG---ATGAGGTTGAGGCTTGAGAGGCCCGTTT
GATCTAATTACTTGTGCCTTGGTGGTGTCT-AACACTGTTTTATGTGCCGAGCTCCAATTCCTATTGGAATTCACAACAC
TGTTTTTGTAGGAT-AAATGTCCTTTGGGTCAGAAATCC-CGACCAATGCAGCATAGAAAGAAACAAAAAGCATAGGTCT
GGTGGTTACTGC-------TGGGAAAGGGGGCATGTGTTACTTGTGTATATGTTTTTCGGTTGTAG-------------C
ATGAAGAAACTATCAAATTCCACCGAAAATTATACAGAACAGTTTCCTGTTCCCAACCTTAGTTGTCGCCACCGCCGAAG
GTCTCCTCCACAGTCCACACTGCTGTCTCGGCCCCT--CCTCTCCCCTGTCCGACGTTCTCGTCGTCGGCAATACGAGTG
GGGACC-------------TGTTTGATTTCTTTTTCTTTTTTATTAGGTTTTGTTTCCATGGCAGTGGAGGCGATGAAGG
CAAGTTATTGACAAAAAACTACC---------------------------------------------------------
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---------------------------------------------GCTTTAGGGGTTTGCGTCCCACTGAACTATC----
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-------------------------------------------------------------------------------A
TGTC----------------------------------------------------------------------------
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--------------------------------------------ACTATCATCCAAGGCAGCAAGATATAGTCATCATGC
AGGTTGCCCTATTATTAGCCAT-GGCTTTAGGCAGCCAATCCTTTTTAATGAACGTGCGTTGATTCCAGCAATCAAGTCT
TGAGATTCATGTCACTACATAGGAGGCCTAT-CCCCAAAATCCAATCAAATCATTCCTATGCACGTCCTCACCTTCGACT
ATATAAGAAGCCTACCCCAATCTCCCTCCTGTCATCTCCAAACACAGCTCCCCAT-TTCTCTCTTACTCCTCCAGAAGAA
GAGCTCCCGCAACAATGGCGGTTTCGTCGAAGCTTTTCCCGGCCGCCGTCCTTCTCCTGCTTCTCCTCCTGGCCACAGGT
AATTGACTGTTTGTTTCTCCTGATAGCCTTAGTA-------ACTTCAAACCTAACCTGAGACTGATCGTTCTTGATG---
-CGTGCAGAGATGGGGCCTGTGCGGGAGGCGACGGCATGCGAGCACGCTCCGTGCAAGAAGTGCACCGGATCGTGCTTCG
ACCCGGAGGAGTGCGCCATCACGTGCCGGAACGAGGGCTATGACTCCGGCGACTGCACCGGCAGCGGAGCCTACCGCTGC
ACGTGCAGCAAGAATTGCTAGCTAGCTAGTGCGTGAAGAACACACGAGTAGAATAAAAAGGGAATTACAGTTCTGTGCTA
CTCTAGTTTGTTCTTTTCTTTTTGACCTTGGA--TTTTGTTGGAAGGTTCACACGAATATGGCCGAAACTCAGTGGACTT
CACTAGGGCCCAGTTCTGAGATTATTTTGTATCGCACAAATTATGTACTAAGAGAGATTTCTCTCAAAAAAGAATA--CT
AAAAGAGAGTAATTGTTAGTCACATGTTTGTCCCTCAGAA----CAGGAGTATACGGTGGGCAATCAAATTGACATGGCA
AACATCCAAAACAGATTAGCAAAAGTCCGACAAGTGGGGTTAACCAAAAAAGTTTGGGTAGAGCCAGATCTAAGTCTTGG
CTAGATAAACGCCCTGCGATAAGAGGGTAGTTATGAACCTTGTGTTGATTTGAGGGGAAAAAAGAGTCAAAATCCAATCG
AAACCTTCATATGCACATCTTCCTCTTCAACTACATAAGACACAAAACAAACATGT-----CATCTTAACCCTTCAGAAC
TATCTCAGTGGCGGTTTCTC-GGTCATCCTTCTCCTGCCCACATGTATGTTGTAATTGATTG----------TGATATTG
GGTGCTTATGCATGCATGGATTAAACGTCTCCAACCACAATGGTCATTTGCCACAATGAGG-------------GTCTGC
TTTAGACCCTCATTTGTCA-------------------------------------------AGGTACAGAACGATATTT
CTTAATCCATTTTCAAATTGTCTAAACACAAGCACATGGTTGATAGGGTGGTCAATTCTCCATTAGTGAAAGGAAAGAAG
AAAAAGGTCAAAGATGGGCCGGTCGGACGGACTGTCCGGACACCTCCGTTTCTTTCACACATGGCTGGGTTAGTGGA---
-----------------------------------------TTTGCGGACAGCCATGGCAAACGGAGGTTTTTGAGGACT
CGGTTGAAGGCTTCTTTTGTACGTATCCACACA-CTGTCCGGATATATAGATATATGAGGACGATTTGAGTGTCTGGTTG
AAGACCCTCTTACATAAGGATCTGCA
>chr1D_1
CGTGATCTTAGTTATCAACTTATCATTAGCGAGTGTGTGCTGTAGTCTATTATGTGAAGGAGTAGCTGGCAAGTAGTAGT
TCATGTGAACTTGTTAGAAAAATATGCACC-----TTTATTCTCTGCTGGGCATTACGTTCTCCAGGTTGAAGTTTGGTT
TAGGTCAGCTCTTCTTCCTGGGCTGGCATATTTTTTATGTTTGATGATG---CTGAGGTTGAGGCTTGAGAGTACCGTTT
GATCTAATTACTTGTGCCTTGGTGGTGTCT-AACACTGTTTTATGTGCTCAGCTCCAATTCCTATTGGAATTCAGAACAC
TGTTTTCATAGGAT-AAATGTCCTT-GGGTCAGAAATACTCGACCAATGCAGCATAGAAAGAAACTATAAGTATAGGTCT
GGTGGCTACTGGTTACTGCTGTGAAA-GGAGCATGTGTTACTTGTGTATATGTTT----GTTTTAGGATCACTCAGATTC
ATGAAGAAACTATCAAAACCCACTGAAAATTATACAGAACGATCTCCTGTTCCCAACCTTAGTTGTCGCCACCGCCGAAG
GTCT----------CCATACCGCTGTCTCGGACCCTCGCCTCTCCCCTGTCTGATGTTCTCGTCGGTGACAATAGGAGTG
GGGACC-------------TGTTTTTGT--TTTTTGTTTTTTATTAGGTTTTGTTTCCATGGCGGTGGTGGCGATGAAGG
CGAGTTATTGACAAAAAAACTACCACTTTAGGACTTGTTCGGTTGCAAGAGTTTTGAAGAGGGTTGGGGAGGATTAAATC
CCCTATAA------------------------------------------------------------------------
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--------------GTCAAAATCCACCTCAATCCCTCCAAACCTCTCCATTCCTCTCCAAGAGAGGTTTAACTGAACATA
GCCTTATGCTTCGTTTGACATGAGAGGTTTTGGGGGGTATCGAGTGGATTTT----------------------------
------------------------------------------------CCACACGTGGCCCAGAACCCTCTACAATCCTC
CTTGGACCATTTGGCAGACGAGGTTTCGCTGGCCCAATCCATCTGATTCCCCCTCGATCCGCCTCGACCCACGCGGGTCA
GAAGGCACGAGGAGGCCCTCGTGGAATTGGAGCCACGCGCGAGACCGAGCCTTCTCCTCGCGCCGCCGTCGGCAGCAGCC
GTCCTCGCGGAGGGGATGCGTGGCTGGAGGG-------------------------------------------------
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-------------------------------------------------------------GATGTGTGGCTGGAGAAGG
ATTTAAGCTTTCAAGGGGATTGGGTGAAAGAGGGGGATTTACCAAATCCCCTAAAATCCCCTCCTCCCTAAACCTCCACG
ATCTCTTC-------------------------CTGTCAAACAAAGCCTTAGGGGTTTGCGTCCCAGTGAACTACC----
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-------------------------------------------------------------------------------A
CATTTTAAAAAGTGACCGAAAACTA-------------------------------------------------------
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--------------CCAATATTTTTT------------------------------------------------------
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----------TATTTTGTGACAAAAACTATCACTTTCAG-----------------------------------------
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-----------------------------------------AAAATGATCAGTTTAGATGATTTAAACACGTTTATGACA
TCCGGGACCCACCTGCCAGGGCTGACATGGCGACAAAGTCAACTCCATTTAATTTGACTGTTAAGTTGACCAGTGGGGCC
CGCATGTCAGCATCAACTTCTTCCTCCTCATC------------------------------------------------
-------------------------------------CTCATCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAT
GTCTCTCTCTAAACTGTTATTACCTTGTATAACCACGACAAAATACTATCATCCAAGGCAACAAGATATAGTCATCATGC
AGGTTGCCCTATTATTAGCCAACGGCTATAGGCAGCCAAT-CTTTTCAATGAACGCGCGTTGATCCCAGCAATCAAGTCT
TGAGATTCATGTCACTACATAGGAAGCCTATCCCCCAAAATCCAATCAAACCCTTCCTATGCACGTCTTCACCTTCGACT
ATATAAGAAGCCTG-CCCCATCTCCCTCCTGTCATCTGCAAACACAACTTCCTACATTCTCTCTTACTCCTTCAGAAGAA
AAACTCCCGCAACAATGGCGGTTTCGTCCAAGCTTTTCCCGGCCGCCGTCCTCCTCCTGCTTCTCCTCCTGGCCACAGGT
AATCGACTGCATGTTCGTCCTGACGGGC-TAGTA-------ACTTCCAACCTAACCTGAGACTGATCGTTCTTGATG---
-CGTGCAGAGATGGGGCCTGTGCGGGAGGCCATGGCGTGCGAGCACGCCCCGTGCAAGAAGTGCACCGGGTCGTGCTTCG
ACCCGGAGGAGTGCGCCATCACGTGCCGGAACGAGGGCTACGACTCCGGCGACTGCACCGGCGGCGGAGCCTACCGTTGC
ACGTGCAGCAAGAATTGCTAGCTAGCTAGTGCGTGAAGAACACACGAGTAGAATAAAAAGGGGATTATAGTTCTGTGCTA
CTCTAGTTTGTTCTTTCCTTTTTGACCTTGGA--TTTTGTTCGAAGGTTCACACGAATGTGGCCGAAACTCAGTGGACTC
CACTAGGGTCCAGTTCTGAGATTATTTTGTGTCGCAAG--TTATGTACTAAGAGAGATTTCTCTCAAAAAAGAATATACA
AAAAGAGAGTAACTGTTAGTCAAAGGTTTATCCTTCAGAACGGGAG------TACGGTGGGCTATCAAATTGACATGCAA
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>chr1A_1
CGTGATCTTAGTTATCAACTTATCATTAGCGAGTGTGTGCTGTAGTCTATTATGTAAAGGAGTAGCTGGCAAGTAGTAGT
TCATGTGAACTTGTTAGAAAAATATGCACCCAAATTTTATTCTCTGCTGAGCATGACGTTCTCCAGGTTGAAGTTTGGTT
TAGGTCAGCTGTTCTTCCTGAGCTGGCATAATTTTTATGTTTGATGATGATGATGAGGTTGAGGCTTGAGAGTCCCGTTT
AATCTAATTACTTGTGCCTTGGTGGTGTCTTAACACTGTTTTATGTGCTGAGCTCCAATTCCTATTGGAATTAGCAACAC
TGTTTTCGTAGGATGAAATGTCCTT-GGGTCAGAAATACTCGACCAATGCAGCATAGAAAGAAACTATAAGTATAGGTCT
GGTGGTTACTGT-------TGTGAAA-GGGGCATGTGTTACTTGTGTATATGTTTTTCGGTTGTAGGATCACTTAGATTC
ATGAAGAAACTGTCAAAACCCACTGAAAATTATACTGAACGATCTCCTGTTCCCAACCTTAGTTGTCGCCAC-GCCGAAG
GTGT----------CCACACCGCTCTCGGCCTAGAAAGCTTTTTTTACCGGTGCTGGGAGCTATCGGGAGCTACCGGCAA
ACCATCCACCGTTCACATTTTTTTTTGC--GAACTGTGTTTAAGTAGGACCTATTCATATGTATAATCATGTATTGTGGC
AGTTAATCTTCGGAAACACTAACGCCCATACGTGTGGGTGTTCCCCAACTCGCTCACACGTCTGGATCGTCGTTCACTGT
CTTTTGCACGAATCTTGACACGAAAAGGTGGATTTAATGTGCCACGTAGGACGAGGCTGGTGTGTGGGCATTGAAGAGTT
TGCCCACACGCCCGCACCACGCTGTTTGCCAGCTGCGCTGTGTGGGCGAACTAGTTTCTGCCCACACAGCCACCACCTAG
TTCATCCGCGTGTGGGCGAACTGCTTTTCGCTCACACGACACTTCTACATTGTGGATGGCAACTGCAGTTACGCGAACGT
GGCAACTAGGTAAACACACATGGCAACTGTGATTCTTTGCTAGACGGCAACTGCAGTTGCGCGTACGTGGCAACCAGATA
AACACACATGGCAACTGTGATTAACAATACATGGCAACTATGGTTGGACCACACGTGGCAACTAGGTAAACACACATGGC
AACTACTGTTTGACTATATGTGGCAAGTAGTTAATCACACAGCAACTACGGTTTGATTACACGCGACAACTACCAGAATT
AGACATGGCAATTATAATTAACCAAAATAGATAGAGTTGCCATGCTTTTACAACTACACTTGCTATCCCGGATAACTACA
TCTACCAACCAGGATGGCAACTAAATTGTCATCCCGCGGGATACCTAACGTAGCTGTGCCAGGACGTGTGGGCATTTTTA
CTTCGTGCCACACACGCGAGGTGGTGATGAGTAGTATTTGTTGGGCGTGTGGCACGAAGTAGCCGGGCCTACACGTGTGG
GCAATTCTAATGTCTGCCCACACACAGCCCGTGTGGGCTGCCTCCTGCTCACACCATACACGATGTGTGGGCACATGTCG
AATATACCACACGTGTGGCAGTTGTCAGCGTCCTTAATATTTTGTATATGTCCATGTGAGGAGAAGCAGTACTTTTTGTA
GTGGAATGTACGCATGCATGCAGCATCTCCTCTCTCTCAAACAAATCCATGCATTTTATTTTTGTTTACATTTTTAGATG
GCCAATATTTTTTACAGCATTGTTCTATTATTTAAAATTTTCATATATTCAAATTCTTGAACATAAGATCTTTAGAATGC
CAATCTTGAGTATATTTAAACTAGTTTAATTTTTACTATTTCAATCATATCAAAATATTAATTTCACTCATTTCAAATTA
CAATTTTAGAAATGATTGAAATCGGTTATTGAAATGATTGAAACCACTTTCCCAAATATAGTTTTCTTTGTGAGTTTCAT
ATTCCAGCTTGTGAAATTGTTTCTTCAATGGAGTAATTGTGATGTGTTTTTTTGAAACTAGTGAAATCTATCTTTTGTAA
TGAGTGTAATCAGTTTTTTGAAACAAGTGAAATATAGTATTTCAGTTGAGCGACTATAATGTGTTTTCTGAAATGAGTGA
AATGAGTTATTTGAGAAAAGTGAAATATATCTTTTTGGTGTGAAATGGCTCTTTCAATGTGTGAAACTGATATTGCTGCT
GAGTGAAATATGTTCCAATATTTTTTCCATAAATATGAAGTGAAATGAGTTTTTGAGATATATTTTATAATGAGTTAAAT
CAATTTTCCAAATCAGTGAAATGCGTTGTTTCAAATTTGTGAAATACTTATTTTGGAAACTAGTGAAAGGAGTAATACGT
TTTCTCAAAATGACTGCAATGTGTTTTCTGAAACTAGTGAAATGGGTGAAATCTATATTTTGCAAATGAGTGCAGTGTGT
TTTCTAAAATGAGTGAAATAAGTTATTTGAGTAAAAGTGAAATAAAACCAATTTTTGCTGTGAAACTAATTTTTCAATGT
TTGAAAATGATATTTTTTATAAGCGGAATGCATTTCAATATATTTCGTAAATTTGCAGTGAGATTAGTATTGCAAATGAG
AGTAATGTGTTTTCTGAAATGTGTGAAATCTATTTTGGAAACGGGTGAAATGGTTTTTTAACTGATAATTTGTTTAAATA
ACTGTAATGTATTTTCTGAAATGAGTGAAATATATCTTTTGCAAATGAGTGTAATGTGTTTTATGAAACTAGCGAAACGA
GTAAAATATATCTTTTGTAACAAGTGAAATCAGTTTTTTGAAACGTACGAAATATGTATTTCAATTGAGTGGGTGTAATG
TGTTTTCTGAAATGAGTGAAATGTATCCTATTTAATTGAGTGTAATGTGTTTTCTAAAATGAGTGAAATCTATCTTTTGT
AACGAGTGTAGTGTGTTTTCTAAAACTAGTGAAATGAGTGAAATATGTTTCTTTTCGTTGAGTGAAATATGTTTTCTTGA
AATCGGTTAAATAAAATTAGTTGAAATATATCCAATATTGGCCTTATTTTAAAGTTCATGGCATGAGCAATTCAAATCTA
TAAAAAGTTTCAAAGACAAAAAATTATTTCAAAAGTTATCAACTATTCTAACTATCACAATGAAATAAAATGCTAGTCTT
CATTTTGAAGAGAGAGAATATTATATGCATGCAGCCACTCACCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAACTG
G----------------TATTACCTTGTATACCCATGACAAAATACTATCATCCAAGGCAGCAAGATATAGTCATCATGC
AGGTTGCCCTATTATTAGCCAT-GGCTTTAGGCAGCCAATCCATTTTAATGAACGCGCGTTGATTCCAGCAATCAAGTCT
CGAGATTCATGCCACTACA-------------------AATCCAATCAAATCATTCCTATGCACGTCTTCACCTTCGACA
ATATAAGAAGCCTACCCCCATCTCCCTCATGTCATCTGCAAACACAGCTTCCTGCATTCTCTCTTA---CTCGAGAAGAA
GAACTCTTGCAACAATGGCGGTTTCGTCGAAGCTTTTCCCGGCCGCCGTCCTCCTCCTGCTTCTCCTCCTGGCCACAGGT
AATTGATTGCTTGTTTGTCCTGATGGGCGGGCTAGTAATTCACTTCAAACCTAACCTGAGACTGATTGTTCTTGATGTGT
ACGTGCAGAGATGGGGCCTGTGCGGGAGGCCATGGCGTGCGAGCACGCGCGGTGCAAGAAGTGCACCGGGGCGTGCTTCG
ACCCGGATGAGTGCGCCATCACTTGCCGGAACGAGGGCTACGACTCCGGCGACTGCACCGGCAGCGGAGCCTACCGCTGC
ACGTGCAGCAAGAATTGCTAGCTAACTAGTGCGTGAAGAACACACGAGTAGAATAAAAGGGGGATTACAGTTCTGTGCTA
CTCTAGTTTGTTCTTTCCTTTTTGACCATGGATTTTTTGTTCGAAGGTTCACACGAATGTGGCCTAAACTTAGT------
-----GGTTCCAGTTCTGAGATTATTTTGTATCGCAAGC--TATGTACTAAGAGAGATTTCTCTCAACAAAGATTATACT
AAAAGAGAGTAATCGTTTGTCAAAGGTTTATCCTTCAGAACATACAGGAGTATACGGCGGGCAATCAAATTGACATGCCA
AGCATCCAAAACTGCTTAGCAAATGGCCGACAAGTGGGTAACGTTGGGGC------------------------------
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--------------------------------------GACACAAAACAAACATATACTAGCATCTTAACCCTTCAGAAC
AAACGCAATGGCGGTTTCCCTGGTCATCCTTCTCCTAGCCACATGTACGTTGTAATTGATTGGTTATCCTAATGATATTG
GGTGCTTATGCACGCATGGATTAAACGTCTCCAATCACAACGGTCATTTGTCCCCGGAACACATTGTACAGCGTGTCCAC
TTTAGACCCTTTACTTGTCTAGTTTTTTCGAAAAGGATGATGACCGACGGCATCATTTGTCTAGGTACAGAACAATATCT
CTCAATCCATTTTCAAATTGTTT-AAAACAAGCACATGAATGATAGGGTGGTCCGCTCTTCATTAGTGAGAGGAAAGAAA
GAAAGAAAA----------------------------GGTCACCTCAGTTTCTTTCACACATGGCTGGGTTTGTGGAGTG
AAGCCAATTTATTCATCAAAAAAAAAGGCTGGGTTTGTGGATTTGCGGACAACCATGACAAACGGAGGATTTTGGGGACT
CGGTTTAAGAGGCTTCACACACTGTTCGGGCTGTCTGTCCGGATATATAGATATATGAGGACGAT---------------
--------------------------
>SNPs
----------------------------S--SSS----------------------------------------------
------------------------------S-------------------------------------------------
---------------------------S---S----------------------------------------S-------
------------------------------------------------S-------------------------------
------S------------------S-----------S---------------------------S-S---S--------
-----------S---------S----S-----------------------------------------------------
-----------------SS----S----------------SS-S------------------------------------
----SSSSSSSSSS------S----------S-------------------S--S----------SS-S-----------
------------------------SSS-SS-----S---------------------------S----------------
-S-------------------S----------------------------------------------------------
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-----------------------------------------------S------------------S-------------
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SS-S----------------------------------------------------------------------------
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-------------------------------------------------------S------------------------
------------------------S------------------------------------------S------------
------------------S------------------S-----------S--S-S-------------------------
--S-------------------------------------------------S---------------------------
---------S------S-------S-S-S---------------------------------------------------
------------------------------S-S---S-----------S--------------------S----------
----------------------------------------S---------------------------------------
--------------------------------------------------------------S-----------------
----------------S------------------------S----------------S--------------------S
--------S---------------------------SSSS----------------------------------------
----------------------S-S----S---S-------------------------------------------S--
-S----------S-S--------S-S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-------------------------
S-S-S--S----------S-----------------SS---------S--------------------------------
------------S---------------------S-----S---------S-S-SSSS-SS----------------SS-
----------SSSS-SSSS------------------------------------------------------S----S-
--S------------------S-S--S-----------SS-------------SSS---S---------S---------S
S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------S------------------------S--------
---------------------------------------------------S-----S----------S-----S-----
-----S---SSSSS-SSSSS--SSS--SSSSSS--------------------------------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3575
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-----------------------------------CTCCAAACACAGCTCCCCAT-------------------------
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>reverse_4955
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--------------------------------------------------------------------------AGGACT
CGGTTGAAGGCTTC------------------------------------------------------------------
--------------------------
