Multiple sequence alignment - TraesCS1B01G386700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G386700 chr1B 100.000 2462 0 0 1 2462 621058345 621060806 0.000000e+00 4547.0
1 TraesCS1B01G386700 chr1B 87.714 1636 144 32 7 1600 620785148 620786768 0.000000e+00 1855.0
2 TraesCS1B01G386700 chr1B 87.663 1532 109 46 818 2302 620899925 620901423 0.000000e+00 1709.0
3 TraesCS1B01G386700 chr1B 89.872 780 51 16 823 1589 610558246 610559010 0.000000e+00 977.0
4 TraesCS1B01G386700 chr1B 89.494 790 52 21 823 1596 621272360 621271586 0.000000e+00 970.0
5 TraesCS1B01G386700 chr1B 90.634 726 41 14 991 1692 620551663 620552385 0.000000e+00 939.0
6 TraesCS1B01G386700 chr1B 88.261 690 76 2 1 685 621273335 621272646 0.000000e+00 821.0
7 TraesCS1B01G386700 chr1B 87.195 164 18 3 2302 2462 620927798 620927961 1.500000e-42 183.0
8 TraesCS1B01G386700 chr1B 92.308 91 6 1 688 777 621272578 621272488 7.150000e-26 128.0
9 TraesCS1B01G386700 chr1A 87.951 1635 151 25 4 1596 546215459 546217089 0.000000e+00 1886.0
10 TraesCS1B01G386700 chr1A 91.925 743 44 7 991 1720 546212407 546213146 0.000000e+00 1026.0
11 TraesCS1B01G386700 chr1A 93.155 599 32 6 895 1485 542167881 542168478 0.000000e+00 870.0
12 TraesCS1B01G386700 chr1D 88.409 1389 126 21 237 1596 451624402 451625784 0.000000e+00 1640.0
13 TraesCS1B01G386700 chr1D 91.398 837 45 16 991 1812 451524632 451525456 0.000000e+00 1122.0
14 TraesCS1B01G386700 chr1D 92.804 667 43 3 823 1485 446434638 446435303 0.000000e+00 961.0
15 TraesCS1B01G386700 chr1D 88.706 425 30 6 1881 2302 451525498 451525907 1.020000e-138 503.0
16 TraesCS1B01G386700 chr1D 86.614 254 31 3 4 255 451624122 451624374 6.710000e-71 278.0
17 TraesCS1B01G386700 chr2A 81.719 640 62 29 848 1463 537003253 537003861 1.320000e-132 483.0
18 TraesCS1B01G386700 chr5B 78.571 112 16 6 654 763 526527049 526527154 1.580000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G386700 chr1B 621058345 621060806 2461 False 4547.000000 4547 100.0000 1 2462 1 chr1B.!!$F6 2461
1 TraesCS1B01G386700 chr1B 620785148 620786768 1620 False 1855.000000 1855 87.7140 7 1600 1 chr1B.!!$F3 1593
2 TraesCS1B01G386700 chr1B 620899925 620901423 1498 False 1709.000000 1709 87.6630 818 2302 1 chr1B.!!$F4 1484
3 TraesCS1B01G386700 chr1B 610558246 610559010 764 False 977.000000 977 89.8720 823 1589 1 chr1B.!!$F1 766
4 TraesCS1B01G386700 chr1B 620551663 620552385 722 False 939.000000 939 90.6340 991 1692 1 chr1B.!!$F2 701
5 TraesCS1B01G386700 chr1B 621271586 621273335 1749 True 639.666667 970 90.0210 1 1596 3 chr1B.!!$R1 1595
6 TraesCS1B01G386700 chr1A 546212407 546217089 4682 False 1456.000000 1886 89.9380 4 1720 2 chr1A.!!$F2 1716
7 TraesCS1B01G386700 chr1A 542167881 542168478 597 False 870.000000 870 93.1550 895 1485 1 chr1A.!!$F1 590
8 TraesCS1B01G386700 chr1D 446434638 446435303 665 False 961.000000 961 92.8040 823 1485 1 chr1D.!!$F1 662
9 TraesCS1B01G386700 chr1D 451624122 451625784 1662 False 959.000000 1640 87.5115 4 1596 2 chr1D.!!$F3 1592
10 TraesCS1B01G386700 chr1D 451524632 451525907 1275 False 812.500000 1122 90.0520 991 2302 2 chr1D.!!$F2 1311
11 TraesCS1B01G386700 chr2A 537003253 537003861 608 False 483.000000 483 81.7190 848 1463 1 chr2A.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 3964 0.106967 GATCTGGTTCCAGGAAGCCC 60.107 60.0 25.57 14.36 39.02 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2431 5819 0.254178 TTGAGCTTCATGGAGCCCTC 59.746 55.0 22.85 14.8 43.74 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 3128 5.590259 GGTCAGCCAGTGTAATGAAATATGT 59.410 40.000 0.00 0.00 34.09 2.29
122 3172 3.968649 GCACATTGCATAAGTATGTGGG 58.031 45.455 23.22 6.15 45.73 4.61
126 3176 2.928801 TGCATAAGTATGTGGGCGAT 57.071 45.000 0.54 0.00 36.11 4.58
144 3194 3.064271 GCGATAGTATCCTCTTCCTAGCG 59.936 52.174 4.53 0.00 40.96 4.26
161 3212 2.580815 GGCAATGAAGCAAGGGGC 59.419 61.111 0.00 0.00 45.30 5.80
261 3359 0.175531 GCATTTAAGTGGCGGCCATT 59.824 50.000 26.68 19.23 35.28 3.16
265 3363 2.447244 TTAAGTGGCGGCCATTTTTG 57.553 45.000 30.75 0.00 35.19 2.44
266 3364 0.605589 TAAGTGGCGGCCATTTTTGG 59.394 50.000 30.75 0.00 35.19 3.28
267 3365 1.406860 AAGTGGCGGCCATTTTTGGT 61.407 50.000 26.68 1.94 35.28 3.67
345 3443 1.884075 TTGCGCCGAGTACTGTCCAT 61.884 55.000 4.18 0.00 0.00 3.41
348 3446 0.172578 CGCCGAGTACTGTCCATTCA 59.827 55.000 0.00 0.00 0.00 2.57
356 3454 5.491982 GAGTACTGTCCATTCAAACTCCAT 58.508 41.667 0.00 0.00 30.67 3.41
398 3500 9.090103 TCCTAGCACTATTTAGCTGTATGTTAT 57.910 33.333 0.00 0.00 41.97 1.89
414 3516 1.741145 GTTATTGACGGCGGACCAAAT 59.259 47.619 13.24 5.97 34.57 2.32
440 3542 3.745975 CGAGAATTGTTGTAGACCTTGCA 59.254 43.478 0.00 0.00 0.00 4.08
449 3551 1.264749 TAGACCTTGCAGACCGGCAT 61.265 55.000 0.00 0.00 44.48 4.40
452 3554 2.270205 CTTGCAGACCGGCATCCT 59.730 61.111 0.00 0.00 44.48 3.24
456 3558 2.579201 CAGACCGGCATCCTCGTT 59.421 61.111 0.00 0.00 0.00 3.85
481 3583 8.114331 TGAAGAACACTATTCAATTTGCATCT 57.886 30.769 0.00 0.00 32.66 2.90
495 3597 1.266718 TGCATCTGCTCCGTTTTCAAC 59.733 47.619 3.53 0.00 42.66 3.18
516 3618 0.110104 GCCCTATTCATGAGCAGCCT 59.890 55.000 0.00 0.00 0.00 4.58
521 3623 0.622136 ATTCATGAGCAGCCTGTCCA 59.378 50.000 0.00 0.00 0.00 4.02
530 3632 2.360475 GCCTGTCCAGACAAGCCC 60.360 66.667 9.76 0.00 41.59 5.19
588 3690 1.301401 CTTTGTCGTCCGAAGCCCA 60.301 57.895 0.00 0.00 0.00 5.36
728 3897 2.674754 GGCCGGATCTGGGTTTGA 59.325 61.111 22.38 0.00 0.00 2.69
791 3962 2.295885 CATGATCTGGTTCCAGGAAGC 58.704 52.381 22.61 22.61 40.03 3.86
792 3963 0.620556 TGATCTGGTTCCAGGAAGCC 59.379 55.000 25.57 18.20 39.02 4.35
793 3964 0.106967 GATCTGGTTCCAGGAAGCCC 60.107 60.000 25.57 14.36 39.02 5.19
812 3983 2.611224 CCCAATGCTTGCTTTCCAGTTC 60.611 50.000 0.00 0.00 0.00 3.01
816 3987 1.866853 GCTTGCTTTCCAGTTCGGGG 61.867 60.000 0.00 0.00 34.36 5.73
817 3988 1.866853 CTTGCTTTCCAGTTCGGGGC 61.867 60.000 0.00 0.00 34.36 5.80
846 4119 0.247736 GTCAGTGATCCGAGGCACTT 59.752 55.000 0.00 0.00 42.33 3.16
891 4164 4.021016 CACCTCTCCTCCCCTATAAAATCG 60.021 50.000 0.00 0.00 0.00 3.34
893 4166 4.838986 CCTCTCCTCCCCTATAAAATCGAA 59.161 45.833 0.00 0.00 0.00 3.71
964 4260 2.193536 AGCAAACTCACGCAACCCC 61.194 57.895 0.00 0.00 0.00 4.95
965 4261 2.485795 GCAAACTCACGCAACCCCA 61.486 57.895 0.00 0.00 0.00 4.96
1194 4506 1.674057 CAAGAAGGGCGTGGAGACT 59.326 57.895 0.00 0.00 0.00 3.24
1468 4780 3.019799 TCACATCCTCCTAGACTGACC 57.980 52.381 0.00 0.00 0.00 4.02
1469 4781 2.035632 CACATCCTCCTAGACTGACCC 58.964 57.143 0.00 0.00 0.00 4.46
1486 4823 3.037833 CTGCGTCGCTTGCTGTCA 61.038 61.111 19.50 0.00 0.00 3.58
1491 4828 2.666190 TCGCTTGCTGTCACCTGC 60.666 61.111 0.00 0.00 36.19 4.85
1493 4830 2.256591 CGCTTGCTGTCACCTGCTT 61.257 57.895 0.00 0.00 36.57 3.91
1580 4942 1.686355 TGTTGGCTAGTTGGTTGTGG 58.314 50.000 0.00 0.00 0.00 4.17
1602 4964 5.189180 GGGAACTGAAGTTGCTGATCTATT 58.811 41.667 13.43 0.00 44.36 1.73
1607 4969 7.934855 ACTGAAGTTGCTGATCTATTTGAAT 57.065 32.000 0.00 0.00 0.00 2.57
1608 4970 7.759465 ACTGAAGTTGCTGATCTATTTGAATG 58.241 34.615 0.00 0.00 0.00 2.67
1609 4971 7.392673 ACTGAAGTTGCTGATCTATTTGAATGT 59.607 33.333 0.00 0.00 0.00 2.71
1610 4972 8.114331 TGAAGTTGCTGATCTATTTGAATGTT 57.886 30.769 0.00 0.00 0.00 2.71
1611 4973 9.230122 TGAAGTTGCTGATCTATTTGAATGTTA 57.770 29.630 0.00 0.00 0.00 2.41
1646 5014 9.209175 AGTAGTAGTACTTTTGCTGAATTTCAG 57.791 33.333 19.92 19.92 40.83 3.02
1696 5065 4.196193 TCGTTGGTGTGAGAACTGAATTT 58.804 39.130 0.00 0.00 0.00 1.82
1700 5069 5.499139 TGGTGTGAGAACTGAATTTTGTC 57.501 39.130 0.00 0.00 0.00 3.18
1701 5070 4.946772 TGGTGTGAGAACTGAATTTTGTCA 59.053 37.500 0.00 0.00 0.00 3.58
1705 5074 4.919754 GTGAGAACTGAATTTTGTCATGCC 59.080 41.667 0.00 0.00 29.84 4.40
1709 5078 4.942761 ACTGAATTTTGTCATGCCAACT 57.057 36.364 0.00 0.00 0.00 3.16
1711 5080 4.341806 ACTGAATTTTGTCATGCCAACTGA 59.658 37.500 0.00 0.00 0.00 3.41
1713 5082 4.583907 TGAATTTTGTCATGCCAACTGAGA 59.416 37.500 0.00 0.00 0.00 3.27
1714 5083 5.244402 TGAATTTTGTCATGCCAACTGAGAT 59.756 36.000 0.00 0.00 0.00 2.75
1715 5084 5.733620 ATTTTGTCATGCCAACTGAGATT 57.266 34.783 0.00 0.00 0.00 2.40
1716 5085 4.771590 TTTGTCATGCCAACTGAGATTC 57.228 40.909 0.00 0.00 0.00 2.52
1717 5086 3.421919 TGTCATGCCAACTGAGATTCA 57.578 42.857 0.00 0.00 0.00 2.57
1735 5104 7.833682 TGAGATTCAGAGAAGTCAGAGATAGTT 59.166 37.037 0.00 0.00 0.00 2.24
1742 5111 8.143193 CAGAGAAGTCAGAGATAGTTATGCATT 58.857 37.037 3.54 0.00 0.00 3.56
1762 5131 7.471721 TGCATTTCTGTATTGGTAATTTCGAG 58.528 34.615 0.00 0.00 0.00 4.04
1780 5149 8.611654 ATTTCGAGTTTTACTAGGTGCTTAAA 57.388 30.769 0.00 0.00 0.00 1.52
1797 5166 5.945784 TGCTTAAACTAATCTCTGCCATGTT 59.054 36.000 0.00 0.00 0.00 2.71
1812 5181 3.120923 GCCATGTTTGTGCTTTCATTTCG 60.121 43.478 0.00 0.00 0.00 3.46
1815 5184 5.689514 CCATGTTTGTGCTTTCATTTCGTAA 59.310 36.000 0.00 0.00 0.00 3.18
1817 5186 4.731000 TGTTTGTGCTTTCATTTCGTAACG 59.269 37.500 0.00 0.00 0.00 3.18
1827 5210 4.242475 TCATTTCGTAACGTGCAGATTCT 58.758 39.130 0.00 0.00 0.00 2.40
1830 5213 3.291809 TCGTAACGTGCAGATTCTTGA 57.708 42.857 0.00 0.00 0.00 3.02
1831 5214 3.644823 TCGTAACGTGCAGATTCTTGAA 58.355 40.909 0.00 0.00 0.00 2.69
1835 5218 5.163953 CGTAACGTGCAGATTCTTGAATCTT 60.164 40.000 19.65 9.65 37.41 2.40
1836 5219 4.675190 ACGTGCAGATTCTTGAATCTTG 57.325 40.909 19.65 16.03 37.41 3.02
1840 5223 5.503683 CGTGCAGATTCTTGAATCTTGATCC 60.504 44.000 19.65 9.21 37.41 3.36
1843 5226 5.239087 GCAGATTCTTGAATCTTGATCCTCC 59.761 44.000 19.65 3.27 37.41 4.30
1844 5227 6.354938 CAGATTCTTGAATCTTGATCCTCCA 58.645 40.000 19.65 0.00 37.41 3.86
1845 5228 6.999272 CAGATTCTTGAATCTTGATCCTCCAT 59.001 38.462 19.65 0.00 37.41 3.41
1847 5230 8.721479 AGATTCTTGAATCTTGATCCTCCATTA 58.279 33.333 17.30 0.00 36.14 1.90
1848 5231 8.921353 ATTCTTGAATCTTGATCCTCCATTAG 57.079 34.615 0.00 0.00 0.00 1.73
1850 5233 6.388100 TCTTGAATCTTGATCCTCCATTAGGT 59.612 38.462 0.00 0.00 46.62 3.08
1852 5235 6.595682 TGAATCTTGATCCTCCATTAGGTTC 58.404 40.000 0.00 0.00 46.62 3.62
1853 5236 5.574970 ATCTTGATCCTCCATTAGGTTCC 57.425 43.478 0.00 0.00 46.62 3.62
1854 5237 4.370776 TCTTGATCCTCCATTAGGTTCCA 58.629 43.478 0.00 0.00 46.62 3.53
1855 5238 4.977739 TCTTGATCCTCCATTAGGTTCCAT 59.022 41.667 0.00 0.00 46.62 3.41
1856 5239 5.433051 TCTTGATCCTCCATTAGGTTCCATT 59.567 40.000 0.00 0.00 46.62 3.16
1857 5240 5.732331 TGATCCTCCATTAGGTTCCATTT 57.268 39.130 0.00 0.00 46.62 2.32
1858 5241 5.694995 TGATCCTCCATTAGGTTCCATTTC 58.305 41.667 0.00 0.00 46.62 2.17
1862 5245 4.272489 CTCCATTAGGTTCCATTTCTGCA 58.728 43.478 0.00 0.00 35.89 4.41
1868 5251 3.635591 AGGTTCCATTTCTGCATTAGGG 58.364 45.455 0.00 0.00 0.00 3.53
1892 5277 2.490115 AGAGCCTAGTCTTGTTCAGTCG 59.510 50.000 0.00 0.00 0.00 4.18
1893 5278 1.067495 AGCCTAGTCTTGTTCAGTCGC 60.067 52.381 0.00 0.00 0.00 5.19
1894 5279 1.997669 CCTAGTCTTGTTCAGTCGCC 58.002 55.000 0.00 0.00 0.00 5.54
1898 5283 2.742372 CTTGTTCAGTCGCCCGGG 60.742 66.667 19.09 19.09 0.00 5.73
1930 5315 4.020128 ACCTAGTCTTGTTCAATCCTCCAC 60.020 45.833 0.00 0.00 0.00 4.02
1931 5316 3.425162 AGTCTTGTTCAATCCTCCACC 57.575 47.619 0.00 0.00 0.00 4.61
1935 5320 4.081406 TCTTGTTCAATCCTCCACCATTG 58.919 43.478 0.00 0.00 0.00 2.82
1941 5326 4.843728 TCAATCCTCCACCATTGACTTAC 58.156 43.478 0.00 0.00 34.71 2.34
1956 5341 5.420725 TGACTTACCATATCAGCAACAGT 57.579 39.130 0.00 0.00 0.00 3.55
1975 5360 5.312895 ACAGTTTGGTGTTATACATGAGCA 58.687 37.500 0.00 0.00 0.00 4.26
1999 5385 8.749499 GCATGTTACTCTGAAAATATCAAATGC 58.251 33.333 0.00 0.00 37.67 3.56
2002 5388 8.390354 TGTTACTCTGAAAATATCAAATGCGAG 58.610 33.333 0.00 0.00 37.67 5.03
2004 5390 7.383102 ACTCTGAAAATATCAAATGCGAGTT 57.617 32.000 0.00 0.00 35.96 3.01
2008 5394 8.081633 TCTGAAAATATCAAATGCGAGTTGTTT 58.918 29.630 0.00 0.00 37.67 2.83
2085 5471 2.539274 CTCTAGAGCGATGCTTCTTTGC 59.461 50.000 6.86 0.00 39.88 3.68
2177 5565 4.467438 TGAAGCTATCATCTTGTCCTGTGA 59.533 41.667 0.00 0.00 31.50 3.58
2178 5566 4.399004 AGCTATCATCTTGTCCTGTGAC 57.601 45.455 0.00 0.00 42.12 3.67
2238 5626 1.804396 CTGCATTGCCAAACCGACCA 61.804 55.000 6.12 0.00 0.00 4.02
2251 5639 2.718563 ACCGACCAGTCTGTTTTGTTT 58.281 42.857 0.00 0.00 0.00 2.83
2302 5690 4.397420 TCAAAGTCCAATACATGTGCAGT 58.603 39.130 9.11 0.00 0.00 4.40
2303 5691 4.455533 TCAAAGTCCAATACATGTGCAGTC 59.544 41.667 9.11 0.00 0.00 3.51
2304 5692 3.701205 AGTCCAATACATGTGCAGTCA 57.299 42.857 9.11 0.00 0.00 3.41
2305 5693 4.226427 AGTCCAATACATGTGCAGTCAT 57.774 40.909 9.11 0.00 0.00 3.06
2306 5694 4.592942 AGTCCAATACATGTGCAGTCATT 58.407 39.130 9.11 0.00 0.00 2.57
2307 5695 5.012239 AGTCCAATACATGTGCAGTCATTT 58.988 37.500 9.11 0.00 0.00 2.32
2308 5696 5.477984 AGTCCAATACATGTGCAGTCATTTT 59.522 36.000 9.11 0.00 0.00 1.82
2309 5697 6.015180 AGTCCAATACATGTGCAGTCATTTTT 60.015 34.615 9.11 0.00 0.00 1.94
2331 5719 7.753309 TTTTAGTAGCTCACATAAAAAGGCA 57.247 32.000 0.00 0.00 0.00 4.75
2332 5720 7.938140 TTTAGTAGCTCACATAAAAAGGCAT 57.062 32.000 0.00 0.00 0.00 4.40
2333 5721 7.938140 TTAGTAGCTCACATAAAAAGGCATT 57.062 32.000 0.00 0.00 0.00 3.56
2334 5722 6.840780 AGTAGCTCACATAAAAAGGCATTT 57.159 33.333 0.00 0.00 0.00 2.32
2335 5723 6.856895 AGTAGCTCACATAAAAAGGCATTTC 58.143 36.000 0.00 0.00 0.00 2.17
2336 5724 5.726980 AGCTCACATAAAAAGGCATTTCA 57.273 34.783 0.00 0.00 0.00 2.69
2337 5725 6.290294 AGCTCACATAAAAAGGCATTTCAT 57.710 33.333 0.00 0.00 0.00 2.57
2338 5726 6.335777 AGCTCACATAAAAAGGCATTTCATC 58.664 36.000 0.00 0.00 0.00 2.92
2339 5727 6.071221 AGCTCACATAAAAAGGCATTTCATCA 60.071 34.615 0.00 0.00 0.00 3.07
2340 5728 6.759827 GCTCACATAAAAAGGCATTTCATCAT 59.240 34.615 0.00 0.00 0.00 2.45
2341 5729 7.254319 GCTCACATAAAAAGGCATTTCATCATG 60.254 37.037 0.00 1.60 0.00 3.07
2342 5730 7.838884 TCACATAAAAAGGCATTTCATCATGA 58.161 30.769 0.00 0.00 0.00 3.07
2343 5731 8.312564 TCACATAAAAAGGCATTTCATCATGAA 58.687 29.630 0.00 0.00 34.03 2.57
2344 5732 8.385111 CACATAAAAAGGCATTTCATCATGAAC 58.615 33.333 0.00 0.00 35.89 3.18
2345 5733 8.316214 ACATAAAAAGGCATTTCATCATGAACT 58.684 29.630 0.00 0.00 35.89 3.01
2346 5734 9.158233 CATAAAAAGGCATTTCATCATGAACTT 57.842 29.630 0.00 0.00 35.89 2.66
2347 5735 7.662604 AAAAAGGCATTTCATCATGAACTTC 57.337 32.000 0.00 0.00 35.89 3.01
2348 5736 5.988310 AAGGCATTTCATCATGAACTTCA 57.012 34.783 0.00 0.00 35.89 3.02
2349 5737 5.320549 AGGCATTTCATCATGAACTTCAC 57.679 39.130 0.00 0.00 35.89 3.18
2350 5738 4.768448 AGGCATTTCATCATGAACTTCACA 59.232 37.500 0.00 0.00 35.89 3.58
2351 5739 5.100259 GGCATTTCATCATGAACTTCACAG 58.900 41.667 0.00 0.00 35.89 3.66
2352 5740 5.106038 GGCATTTCATCATGAACTTCACAGA 60.106 40.000 0.00 0.00 35.89 3.41
2353 5741 5.798934 GCATTTCATCATGAACTTCACAGAC 59.201 40.000 0.00 0.00 35.89 3.51
2354 5742 6.569035 GCATTTCATCATGAACTTCACAGACA 60.569 38.462 0.00 0.00 35.89 3.41
2355 5743 6.940831 TTTCATCATGAACTTCACAGACAA 57.059 33.333 0.00 0.00 35.89 3.18
2356 5744 6.549912 TTCATCATGAACTTCACAGACAAG 57.450 37.500 0.00 0.00 30.26 3.16
2357 5745 4.453478 TCATCATGAACTTCACAGACAAGC 59.547 41.667 0.00 0.00 0.00 4.01
2358 5746 3.807553 TCATGAACTTCACAGACAAGCA 58.192 40.909 0.00 0.00 0.00 3.91
2359 5747 4.392047 TCATGAACTTCACAGACAAGCAT 58.608 39.130 0.00 0.00 0.00 3.79
2360 5748 4.453478 TCATGAACTTCACAGACAAGCATC 59.547 41.667 0.00 0.00 0.00 3.91
2361 5749 3.807553 TGAACTTCACAGACAAGCATCA 58.192 40.909 0.00 0.00 0.00 3.07
2362 5750 4.198530 TGAACTTCACAGACAAGCATCAA 58.801 39.130 0.00 0.00 0.00 2.57
2363 5751 4.823442 TGAACTTCACAGACAAGCATCAAT 59.177 37.500 0.00 0.00 0.00 2.57
2364 5752 5.997129 TGAACTTCACAGACAAGCATCAATA 59.003 36.000 0.00 0.00 0.00 1.90
2365 5753 6.656270 TGAACTTCACAGACAAGCATCAATAT 59.344 34.615 0.00 0.00 0.00 1.28
2366 5754 6.432607 ACTTCACAGACAAGCATCAATATG 57.567 37.500 0.00 0.00 36.09 1.78
2367 5755 5.942236 ACTTCACAGACAAGCATCAATATGT 59.058 36.000 0.00 0.00 35.38 2.29
2368 5756 7.105588 ACTTCACAGACAAGCATCAATATGTA 58.894 34.615 0.00 0.00 35.38 2.29
2369 5757 7.772292 ACTTCACAGACAAGCATCAATATGTAT 59.228 33.333 0.00 0.00 35.38 2.29
2370 5758 9.264719 CTTCACAGACAAGCATCAATATGTATA 57.735 33.333 0.00 0.00 35.38 1.47
2371 5759 9.783081 TTCACAGACAAGCATCAATATGTATAT 57.217 29.630 0.00 0.00 35.38 0.86
2372 5760 9.211485 TCACAGACAAGCATCAATATGTATATG 57.789 33.333 0.00 0.00 35.38 1.78
2373 5761 8.996271 CACAGACAAGCATCAATATGTATATGT 58.004 33.333 0.00 0.00 35.38 2.29
2374 5762 8.996271 ACAGACAAGCATCAATATGTATATGTG 58.004 33.333 0.00 0.00 35.38 3.21
2375 5763 8.996271 CAGACAAGCATCAATATGTATATGTGT 58.004 33.333 0.00 0.00 35.38 3.72
2436 5824 5.722021 TTTGAAGTTTCCAAATAGAGGGC 57.278 39.130 0.00 0.00 0.00 5.19
2437 5825 4.657814 TGAAGTTTCCAAATAGAGGGCT 57.342 40.909 0.00 0.00 0.00 5.19
2438 5826 4.589908 TGAAGTTTCCAAATAGAGGGCTC 58.410 43.478 0.00 0.00 0.00 4.70
2439 5827 3.653835 AGTTTCCAAATAGAGGGCTCC 57.346 47.619 0.00 0.00 0.00 4.70
2440 5828 2.919602 AGTTTCCAAATAGAGGGCTCCA 59.080 45.455 0.00 0.00 0.00 3.86
2441 5829 3.529319 AGTTTCCAAATAGAGGGCTCCAT 59.471 43.478 0.00 0.00 0.00 3.41
2442 5830 3.582998 TTCCAAATAGAGGGCTCCATG 57.417 47.619 0.00 0.00 0.00 3.66
2443 5831 2.775418 TCCAAATAGAGGGCTCCATGA 58.225 47.619 0.00 0.00 0.00 3.07
2444 5832 3.122480 TCCAAATAGAGGGCTCCATGAA 58.878 45.455 0.00 0.00 0.00 2.57
2445 5833 3.137176 TCCAAATAGAGGGCTCCATGAAG 59.863 47.826 0.00 0.00 0.00 3.02
2446 5834 2.883386 CAAATAGAGGGCTCCATGAAGC 59.117 50.000 0.00 0.00 41.73 3.86
2447 5835 2.115337 ATAGAGGGCTCCATGAAGCT 57.885 50.000 3.19 0.00 42.13 3.74
2448 5836 1.418334 TAGAGGGCTCCATGAAGCTC 58.582 55.000 3.19 0.00 43.47 4.09
2449 5837 0.619832 AGAGGGCTCCATGAAGCTCA 60.620 55.000 6.57 0.00 45.69 4.26
2450 5838 0.254178 GAGGGCTCCATGAAGCTCAA 59.746 55.000 6.57 0.00 45.69 3.02
2451 5839 0.255318 AGGGCTCCATGAAGCTCAAG 59.745 55.000 6.57 0.00 45.69 3.02
2452 5840 1.382692 GGGCTCCATGAAGCTCAAGC 61.383 60.000 3.19 0.00 42.63 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 3172 5.977883 CCGCTAGGAAGAGGATACTATCGC 61.978 54.167 0.00 0.00 45.01 4.58
126 3176 2.107726 TGCCGCTAGGAAGAGGATACTA 59.892 50.000 0.00 0.00 45.01 1.82
144 3194 2.580815 GCCCCTTGCTTCATTGCC 59.419 61.111 0.00 0.00 36.87 4.52
161 3212 0.102481 ATGGGCTACAAGTCGCTACG 59.898 55.000 0.00 0.00 0.00 3.51
168 3220 1.847798 TTCCGGCATGGGCTACAAGT 61.848 55.000 0.00 0.00 40.87 3.16
261 3359 5.237815 CACTGCTCACTGTATCTACCAAAA 58.762 41.667 0.00 0.00 0.00 2.44
265 3363 2.101582 CCCACTGCTCACTGTATCTACC 59.898 54.545 0.00 0.00 0.00 3.18
266 3364 2.482142 GCCCACTGCTCACTGTATCTAC 60.482 54.545 0.00 0.00 36.87 2.59
267 3365 1.757118 GCCCACTGCTCACTGTATCTA 59.243 52.381 0.00 0.00 36.87 1.98
345 3443 5.503634 TTCTCATGGAGATGGAGTTTGAA 57.496 39.130 0.00 0.00 38.56 2.69
348 3446 5.634118 TGTTTTCTCATGGAGATGGAGTTT 58.366 37.500 0.00 0.00 38.56 2.66
356 3454 4.471025 TGCTAGGATGTTTTCTCATGGAGA 59.529 41.667 0.00 0.00 36.86 3.71
398 3500 0.820074 AACATTTGGTCCGCCGTCAA 60.820 50.000 0.00 0.00 37.67 3.18
414 3516 5.209818 AGGTCTACAACAATTCTCGAACA 57.790 39.130 0.00 0.00 0.00 3.18
440 3542 1.541310 TTCAACGAGGATGCCGGTCT 61.541 55.000 1.90 0.00 0.00 3.85
449 3551 5.462530 TGAATAGTGTTCTTCAACGAGGA 57.537 39.130 1.08 0.00 34.95 3.71
452 3554 6.855914 GCAAATTGAATAGTGTTCTTCAACGA 59.144 34.615 0.00 0.00 42.38 3.85
456 3558 8.024865 CAGATGCAAATTGAATAGTGTTCTTCA 58.975 33.333 0.00 0.00 0.00 3.02
495 3597 1.236628 GCTGCTCATGAATAGGGCTG 58.763 55.000 0.00 1.68 0.00 4.85
516 3618 2.741092 GTCGGGCTTGTCTGGACA 59.259 61.111 0.00 0.00 39.98 4.02
521 3623 2.450479 CTTTCGGGTCGGGCTTGTCT 62.450 60.000 0.00 0.00 0.00 3.41
558 3660 0.523072 CGACAAAGTTGAGCCCATGG 59.477 55.000 4.14 4.14 0.00 3.66
568 3670 0.883370 GGGCTTCGGACGACAAAGTT 60.883 55.000 0.00 0.00 0.00 2.66
574 3676 1.161563 TTGTTTGGGCTTCGGACGAC 61.162 55.000 0.00 0.00 0.00 4.34
588 3690 4.400529 AAAACTCATTCGGCCTTTGTTT 57.599 36.364 0.00 0.94 0.00 2.83
686 3790 4.546570 GCCAGAAACATTTGAACAGTACC 58.453 43.478 0.00 0.00 0.00 3.34
720 3889 3.694072 CCGAAGCAAGAATATCAAACCCA 59.306 43.478 0.00 0.00 0.00 4.51
792 3963 5.999603 CCGAACTGGAAAGCAAGCATTGG 63.000 52.174 0.00 0.00 44.09 3.16
793 3964 2.923605 CCGAACTGGAAAGCAAGCATTG 60.924 50.000 0.00 0.00 46.03 2.82
806 3977 2.358737 GACACAGCCCCGAACTGG 60.359 66.667 4.67 0.00 39.55 4.00
816 3987 0.319900 ATCACTGACGTGGACACAGC 60.320 55.000 0.00 0.00 41.53 4.40
817 3988 1.670087 GGATCACTGACGTGGACACAG 60.670 57.143 0.00 0.00 41.53 3.66
846 4119 1.622607 CGCTGATTGGTGGAGGGGTA 61.623 60.000 0.00 0.00 0.00 3.69
891 4164 4.717313 GGAGCGGGGTGGGTGTTC 62.717 72.222 0.00 0.00 0.00 3.18
964 4260 2.359975 GGTTGGGAGCTTCGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
965 4261 3.647771 GGGTTGGGAGCTTCGGGT 61.648 66.667 0.00 0.00 0.00 5.28
1194 4506 6.818644 GCACCTTGAAGATGTAGATCTTGTAA 59.181 38.462 19.08 12.52 47.00 2.41
1332 4644 2.738587 TGGTGGGCTTCTTGTTGTAA 57.261 45.000 0.00 0.00 0.00 2.41
1440 4752 3.769844 TCTAGGAGGATGTGAACTTGGTC 59.230 47.826 0.00 0.00 0.00 4.02
1468 4780 3.782244 GACAGCAAGCGACGCAGG 61.782 66.667 23.70 14.33 0.00 4.85
1469 4781 3.037833 TGACAGCAAGCGACGCAG 61.038 61.111 23.70 15.06 0.00 5.18
1481 4793 1.224069 CGACCACAAGCAGGTGACAG 61.224 60.000 9.11 0.00 41.32 3.51
1486 4823 2.281070 CAGCGACCACAAGCAGGT 60.281 61.111 0.00 0.00 43.46 4.00
1491 4828 1.287730 GCAGAGTCAGCGACCACAAG 61.288 60.000 5.29 0.96 32.18 3.16
1493 4830 1.748329 AAGCAGAGTCAGCGACCACA 61.748 55.000 1.44 0.00 37.01 4.17
1580 4942 6.372659 TCAAATAGATCAGCAACTTCAGTTCC 59.627 38.462 0.00 0.00 35.83 3.62
1611 4973 9.338622 AGCAAAAGTACTACTACTTGAAACAAT 57.661 29.630 0.00 0.00 41.58 2.71
1612 4974 8.609176 CAGCAAAAGTACTACTACTTGAAACAA 58.391 33.333 0.00 0.00 41.58 2.83
1624 4986 6.349363 CCCCTGAAATTCAGCAAAAGTACTAC 60.349 42.308 17.03 0.00 42.98 2.73
1696 5065 3.753815 TGAATCTCAGTTGGCATGACAA 58.246 40.909 10.79 10.79 0.00 3.18
1700 5069 3.870274 TCTCTGAATCTCAGTTGGCATG 58.130 45.455 3.71 0.00 44.58 4.06
1701 5070 4.019501 ACTTCTCTGAATCTCAGTTGGCAT 60.020 41.667 3.71 0.00 44.58 4.40
1705 5074 6.023357 TCTGACTTCTCTGAATCTCAGTTG 57.977 41.667 3.71 0.00 44.58 3.16
1709 5078 7.345691 ACTATCTCTGACTTCTCTGAATCTCA 58.654 38.462 0.00 0.00 0.00 3.27
1711 5080 9.866655 ATAACTATCTCTGACTTCTCTGAATCT 57.133 33.333 0.00 0.00 0.00 2.40
1713 5082 8.359642 GCATAACTATCTCTGACTTCTCTGAAT 58.640 37.037 0.00 0.00 0.00 2.57
1714 5083 7.340487 TGCATAACTATCTCTGACTTCTCTGAA 59.660 37.037 0.00 0.00 0.00 3.02
1715 5084 6.830838 TGCATAACTATCTCTGACTTCTCTGA 59.169 38.462 0.00 0.00 0.00 3.27
1716 5085 7.036996 TGCATAACTATCTCTGACTTCTCTG 57.963 40.000 0.00 0.00 0.00 3.35
1717 5086 7.838079 ATGCATAACTATCTCTGACTTCTCT 57.162 36.000 0.00 0.00 0.00 3.10
1718 5087 8.885494 AAATGCATAACTATCTCTGACTTCTC 57.115 34.615 0.00 0.00 0.00 2.87
1719 5088 8.703743 AGAAATGCATAACTATCTCTGACTTCT 58.296 33.333 0.00 0.00 0.00 2.85
1720 5089 8.763356 CAGAAATGCATAACTATCTCTGACTTC 58.237 37.037 0.00 0.00 32.58 3.01
1723 5092 9.703892 ATACAGAAATGCATAACTATCTCTGAC 57.296 33.333 0.00 0.00 34.51 3.51
1735 5104 9.114952 TCGAAATTACCAATACAGAAATGCATA 57.885 29.630 0.00 0.00 0.00 3.14
1756 5125 7.712205 AGTTTAAGCACCTAGTAAAACTCGAAA 59.288 33.333 0.00 0.00 33.17 3.46
1759 5128 8.524870 TTAGTTTAAGCACCTAGTAAAACTCG 57.475 34.615 1.86 0.00 38.00 4.18
1773 5142 5.500234 ACATGGCAGAGATTAGTTTAAGCA 58.500 37.500 0.00 0.00 0.00 3.91
1780 5149 3.441572 GCACAAACATGGCAGAGATTAGT 59.558 43.478 0.00 0.00 0.00 2.24
1797 5166 4.275662 CACGTTACGAAATGAAAGCACAA 58.724 39.130 13.03 0.00 0.00 3.33
1840 5223 4.272489 TGCAGAAATGGAACCTAATGGAG 58.728 43.478 0.00 0.00 37.04 3.86
1843 5226 6.239120 CCCTAATGCAGAAATGGAACCTAATG 60.239 42.308 0.00 0.00 0.00 1.90
1844 5227 5.835280 CCCTAATGCAGAAATGGAACCTAAT 59.165 40.000 0.00 0.00 0.00 1.73
1845 5228 5.200483 CCCTAATGCAGAAATGGAACCTAA 58.800 41.667 0.00 0.00 0.00 2.69
1847 5230 3.628257 CCCCTAATGCAGAAATGGAACCT 60.628 47.826 0.00 0.00 0.00 3.50
1848 5231 2.695147 CCCCTAATGCAGAAATGGAACC 59.305 50.000 0.00 0.00 0.00 3.62
1849 5232 2.101415 GCCCCTAATGCAGAAATGGAAC 59.899 50.000 0.00 0.00 0.00 3.62
1850 5233 2.292126 TGCCCCTAATGCAGAAATGGAA 60.292 45.455 0.00 0.00 34.05 3.53
1852 5235 1.779221 TGCCCCTAATGCAGAAATGG 58.221 50.000 0.00 0.00 34.05 3.16
1892 5277 1.692173 TAGGTTCACTATGCCCGGGC 61.692 60.000 39.40 39.40 42.35 6.13
1893 5278 0.393077 CTAGGTTCACTATGCCCGGG 59.607 60.000 19.09 19.09 0.00 5.73
1894 5279 1.068741 GACTAGGTTCACTATGCCCGG 59.931 57.143 0.00 0.00 0.00 5.73
1898 5283 5.479306 TGAACAAGACTAGGTTCACTATGC 58.521 41.667 15.09 0.00 46.01 3.14
1930 5315 5.589855 TGTTGCTGATATGGTAAGTCAATGG 59.410 40.000 0.00 0.00 0.00 3.16
1931 5316 6.317140 ACTGTTGCTGATATGGTAAGTCAATG 59.683 38.462 0.00 0.00 0.00 2.82
1935 5320 6.403636 CCAAACTGTTGCTGATATGGTAAGTC 60.404 42.308 0.00 0.00 33.01 3.01
1941 5326 3.507233 ACACCAAACTGTTGCTGATATGG 59.493 43.478 0.00 0.00 33.01 2.74
1975 5360 8.892723 TCGCATTTGATATTTTCAGAGTAACAT 58.107 29.630 0.00 0.00 35.27 2.71
1990 5375 7.899178 TCTAGAAAACAACTCGCATTTGATA 57.101 32.000 0.00 0.00 0.00 2.15
1992 5378 6.612247 TTCTAGAAAACAACTCGCATTTGA 57.388 33.333 1.68 0.00 0.00 2.69
2004 5390 9.598517 ACTTGCATTTCATTTTTCTAGAAAACA 57.401 25.926 26.47 18.44 39.70 2.83
2008 5394 8.075593 GCAACTTGCATTTCATTTTTCTAGAA 57.924 30.769 8.97 0.00 44.26 2.10
2085 5471 1.401905 GTGGGCAGCGAGGAAATAAAG 59.598 52.381 0.00 0.00 0.00 1.85
2177 5565 2.232452 AGTCTGACGCTGCTATTTCAGT 59.768 45.455 1.52 0.00 37.38 3.41
2178 5566 2.886081 AGTCTGACGCTGCTATTTCAG 58.114 47.619 1.52 4.76 37.43 3.02
2238 5626 9.574516 AGTAATCCAAGATAAACAAAACAGACT 57.425 29.630 0.00 0.00 0.00 3.24
2306 5694 8.172352 TGCCTTTTTATGTGAGCTACTAAAAA 57.828 30.769 11.38 11.38 34.51 1.94
2307 5695 7.753309 TGCCTTTTTATGTGAGCTACTAAAA 57.247 32.000 0.00 0.00 0.00 1.52
2308 5696 7.938140 ATGCCTTTTTATGTGAGCTACTAAA 57.062 32.000 0.00 0.00 0.00 1.85
2309 5697 7.938140 AATGCCTTTTTATGTGAGCTACTAA 57.062 32.000 0.00 0.00 0.00 2.24
2310 5698 7.609918 TGAAATGCCTTTTTATGTGAGCTACTA 59.390 33.333 0.00 0.00 0.00 1.82
2311 5699 6.434028 TGAAATGCCTTTTTATGTGAGCTACT 59.566 34.615 0.00 0.00 0.00 2.57
2312 5700 6.620678 TGAAATGCCTTTTTATGTGAGCTAC 58.379 36.000 0.00 0.00 0.00 3.58
2313 5701 6.832520 TGAAATGCCTTTTTATGTGAGCTA 57.167 33.333 0.00 0.00 0.00 3.32
2314 5702 5.726980 TGAAATGCCTTTTTATGTGAGCT 57.273 34.783 0.00 0.00 0.00 4.09
2315 5703 6.101332 TGATGAAATGCCTTTTTATGTGAGC 58.899 36.000 0.00 0.00 0.00 4.26
2316 5704 7.977293 TCATGATGAAATGCCTTTTTATGTGAG 59.023 33.333 0.00 0.00 0.00 3.51
2317 5705 7.838884 TCATGATGAAATGCCTTTTTATGTGA 58.161 30.769 0.00 0.00 0.00 3.58
2318 5706 8.385111 GTTCATGATGAAATGCCTTTTTATGTG 58.615 33.333 9.78 0.00 38.22 3.21
2319 5707 8.316214 AGTTCATGATGAAATGCCTTTTTATGT 58.684 29.630 9.78 0.00 38.22 2.29
2320 5708 8.712285 AGTTCATGATGAAATGCCTTTTTATG 57.288 30.769 9.78 0.00 38.22 1.90
2321 5709 9.374838 GAAGTTCATGATGAAATGCCTTTTTAT 57.625 29.630 9.78 0.00 38.22 1.40
2322 5710 8.366401 TGAAGTTCATGATGAAATGCCTTTTTA 58.634 29.630 9.78 0.00 38.22 1.52
2323 5711 7.172019 GTGAAGTTCATGATGAAATGCCTTTTT 59.828 33.333 9.78 0.00 38.22 1.94
2324 5712 6.647895 GTGAAGTTCATGATGAAATGCCTTTT 59.352 34.615 9.78 0.00 38.22 2.27
2325 5713 6.161381 GTGAAGTTCATGATGAAATGCCTTT 58.839 36.000 9.78 0.00 38.22 3.11
2326 5714 5.244402 TGTGAAGTTCATGATGAAATGCCTT 59.756 36.000 9.78 8.77 38.22 4.35
2327 5715 4.768448 TGTGAAGTTCATGATGAAATGCCT 59.232 37.500 9.78 0.00 38.22 4.75
2328 5716 5.063180 TGTGAAGTTCATGATGAAATGCC 57.937 39.130 9.78 5.51 38.22 4.40
2329 5717 5.798934 GTCTGTGAAGTTCATGATGAAATGC 59.201 40.000 9.78 8.11 38.22 3.56
2330 5718 6.905578 TGTCTGTGAAGTTCATGATGAAATG 58.094 36.000 9.78 0.00 38.22 2.32
2331 5719 7.514784 TTGTCTGTGAAGTTCATGATGAAAT 57.485 32.000 9.78 5.79 38.22 2.17
2332 5720 6.513884 GCTTGTCTGTGAAGTTCATGATGAAA 60.514 38.462 9.78 6.62 38.22 2.69
2333 5721 5.049198 GCTTGTCTGTGAAGTTCATGATGAA 60.049 40.000 9.18 3.29 33.32 2.57
2334 5722 4.453478 GCTTGTCTGTGAAGTTCATGATGA 59.547 41.667 9.18 0.00 0.00 2.92
2335 5723 4.214758 TGCTTGTCTGTGAAGTTCATGATG 59.785 41.667 9.18 6.87 0.00 3.07
2336 5724 4.392047 TGCTTGTCTGTGAAGTTCATGAT 58.608 39.130 9.18 0.00 0.00 2.45
2337 5725 3.807553 TGCTTGTCTGTGAAGTTCATGA 58.192 40.909 9.18 8.02 0.00 3.07
2338 5726 4.214758 TGATGCTTGTCTGTGAAGTTCATG 59.785 41.667 9.18 5.73 0.00 3.07
2339 5727 4.392047 TGATGCTTGTCTGTGAAGTTCAT 58.608 39.130 9.18 0.00 0.00 2.57
2340 5728 3.807553 TGATGCTTGTCTGTGAAGTTCA 58.192 40.909 0.08 0.08 0.00 3.18
2341 5729 4.818534 TTGATGCTTGTCTGTGAAGTTC 57.181 40.909 0.00 0.00 0.00 3.01
2342 5730 6.432162 ACATATTGATGCTTGTCTGTGAAGTT 59.568 34.615 0.00 0.00 36.43 2.66
2343 5731 5.942236 ACATATTGATGCTTGTCTGTGAAGT 59.058 36.000 0.00 0.00 36.43 3.01
2344 5732 6.432607 ACATATTGATGCTTGTCTGTGAAG 57.567 37.500 0.00 0.00 36.43 3.02
2345 5733 9.783081 ATATACATATTGATGCTTGTCTGTGAA 57.217 29.630 0.00 0.00 36.43 3.18
2346 5734 9.211485 CATATACATATTGATGCTTGTCTGTGA 57.789 33.333 0.00 0.00 36.43 3.58
2347 5735 8.996271 ACATATACATATTGATGCTTGTCTGTG 58.004 33.333 0.00 0.00 36.43 3.66
2348 5736 8.996271 CACATATACATATTGATGCTTGTCTGT 58.004 33.333 0.00 0.00 36.43 3.41
2349 5737 8.996271 ACACATATACATATTGATGCTTGTCTG 58.004 33.333 0.00 0.00 36.43 3.51
2412 5800 6.326323 AGCCCTCTATTTGGAAACTTCAAAAA 59.674 34.615 0.00 0.00 37.60 1.94
2413 5801 5.838521 AGCCCTCTATTTGGAAACTTCAAAA 59.161 36.000 0.00 0.00 37.60 2.44
2414 5802 5.393866 AGCCCTCTATTTGGAAACTTCAAA 58.606 37.500 0.00 0.00 38.30 2.69
2415 5803 4.998051 AGCCCTCTATTTGGAAACTTCAA 58.002 39.130 0.00 0.00 0.00 2.69
2416 5804 4.567747 GGAGCCCTCTATTTGGAAACTTCA 60.568 45.833 0.00 0.00 0.00 3.02
2417 5805 3.948473 GGAGCCCTCTATTTGGAAACTTC 59.052 47.826 0.00 0.00 0.00 3.01
2418 5806 3.333680 TGGAGCCCTCTATTTGGAAACTT 59.666 43.478 0.00 0.00 0.00 2.66
2419 5807 2.919602 TGGAGCCCTCTATTTGGAAACT 59.080 45.455 0.00 0.00 0.00 2.66
2420 5808 3.366052 TGGAGCCCTCTATTTGGAAAC 57.634 47.619 0.00 0.00 0.00 2.78
2421 5809 3.527253 TCATGGAGCCCTCTATTTGGAAA 59.473 43.478 0.00 0.00 0.00 3.13
2422 5810 3.122480 TCATGGAGCCCTCTATTTGGAA 58.878 45.455 0.00 0.00 0.00 3.53
2423 5811 2.775418 TCATGGAGCCCTCTATTTGGA 58.225 47.619 0.00 0.00 0.00 3.53
2424 5812 3.484407 CTTCATGGAGCCCTCTATTTGG 58.516 50.000 0.00 0.00 0.00 3.28
2425 5813 2.883386 GCTTCATGGAGCCCTCTATTTG 59.117 50.000 15.77 0.00 36.66 2.32
2426 5814 2.782341 AGCTTCATGGAGCCCTCTATTT 59.218 45.455 22.85 0.00 43.74 1.40
2427 5815 2.371510 GAGCTTCATGGAGCCCTCTATT 59.628 50.000 22.85 1.33 43.74 1.73
2428 5816 1.977129 GAGCTTCATGGAGCCCTCTAT 59.023 52.381 22.85 2.16 43.74 1.98
2429 5817 1.343377 TGAGCTTCATGGAGCCCTCTA 60.343 52.381 22.85 1.83 43.74 2.43
2430 5818 0.619832 TGAGCTTCATGGAGCCCTCT 60.620 55.000 22.85 3.43 43.74 3.69
2431 5819 0.254178 TTGAGCTTCATGGAGCCCTC 59.746 55.000 22.85 14.80 43.74 4.30
2432 5820 0.255318 CTTGAGCTTCATGGAGCCCT 59.745 55.000 22.85 4.70 43.74 5.19
2433 5821 1.382692 GCTTGAGCTTCATGGAGCCC 61.383 60.000 22.85 12.00 43.74 5.19
2434 5822 2.105124 GCTTGAGCTTCATGGAGCC 58.895 57.895 22.85 14.21 43.74 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.