>input_sequence_79491
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--------------------------------------------------------ATGGCCCCCAAGGCAGACAAGAAG
CCGGCCGCCGAGAACAAG---------------GTGGAGAAGGCGGCGGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGC
AGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCGAAGACGAGGGGCCGGAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGC
CCGTTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTGACCAAGTTCACATCCTCCTAG---------------------------
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>chr1B_1_TraesCS1B01G386700
GCACACGA------------------------------------------------------------------------
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-----------------AGCCGCCACTCCTCCAAGTTGTCCTCCACTGTGGGGATGCCGACATGGTCAGCCAGTGTAATG
AAATATGTGTGCCACGCCTGTCGTGCATAAGCACATTGCATAAGTATGTGGGCGATAGTATCCTCTTCCTAGCGGCAA-T
GAAGCAAGGGGC-GTAGCGACTTGTAGCCCATGCCGGAATCGATGGTCGGAGGTCCAGACTCGGTATTAAATAGCAAGCC
ATATGAAGATTTTGCATTTA----------------------------------------------AGTGGCGGCCATTT
TTGGTAGATACAGTGAGCAGTGGGCAAACAAATCATGCCCTGTCATAGCATTTTGTAGGTAGATTGCGCCGAGTACTGTC
CATTCAAACTCCATCTCCATGAGAAAACATCC----TAGCACTATTTAGCTGTATGTTATTGACGGCGGACCAAATGTTC
GAGAATTGTTGTAGACCTTGCAGACCGGCATCCTCGTTGAAGAACACTATTCAATTTGCATCTGCTCCGTTTTCAACAGC
CCTATTCATGAGCAGCCTGTCCAGACAAGCCCGACCCGAAAGCCCGGCATCCGATCCAGCCATGGGCTCAACTTTGTCGT
CCGAAGCCCAAACAAAGGCCGAATGAGTTTTAAATAATTGTTTTAATTTAAAAATAGGTACAGTACTATATTTCAATAAC
CTGGAAGTAATT--ACTTTAAATAAGAAGG--------------------------------------------------
---------------GTACTGTTCAAATGTTTCTGGCCGGGCCGGATCTGGGTTTGATATTCTTGCTTCGGGCTTTGTCA
AGCCC-GGCCCGTCCA-AGGGCATGATCTGGTTCCAGGAAGCCCAATGCTTGCTTTCCAGTTCGGGGCTGTG--------
--------------------------------------------------------------------------------
--------------TCCACGTCAGTGATCCGAGGCACTTACCCCTCCACCAATCAGCGCTCACCTCTCCTCCCCTATAAA
ATCGAACACCCACCCCGCTCCATTCCCCACACCATCTCAGTCC---------------CCACCTTTCC------CTTCCA
GCAAACT--CACGCAACCCCAC-CCGAAGCTCCCAACCCCACCCGAAGCGGCCGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCCGCCGAGAACAAG---------------GTGGAGAAGGCGGCGGAGAAGACCCCGGCGGGCAAGAAGCCCAAGGC
AGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCGAAGACGAGGGGCCGGAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACTTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGC
CCGTTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTGACCAAGTTCACATCCTCCTAGACTGACCCTGCGTCGCTTGC-------
------------------TGTCACCTGCTTGTGGTCGCTGACTCTGCT----TATGTATCTGCAAGTAGTGGTAGG----
--AGTGGTCGTCTGTG-----------TGCCAACGCTTTGTTGGCTAGTTGGTTGT----GGGAACTGAAGTTGCTGATC
TATTTGAATGTTATTGTTTCAAGTAGTA---GTA---CTTTTGCTGAATTTCAGGGGAATCGCTGAATGCTTGCTGTCGC
CTCGTTGGT-GTGAGAACTGAATTTTGTCATGCCAACTGAGATTCAGAGAAGTCAGAGATAGTTATGCATTTCTGTATTG
GTAATTTCGAGTTTTACTAGGTGCTTAAACTAATCTCTGCCATGTTTGTGCTTTCATTTCGTAACG--------------
TGCAGATTCTTGAATCTTGATCCTCCATTAGGTTCCATTTCTGCATTAGGGGCAGAGCC--TAGTCTTGTTCAGTCGCCC
GGGCATAGTGAACCTAGTCTTGTTCAATCCTCCACCATTGACTTACCATATCAGCAACAGTTTGGTGTTATACATGAGCA
TGTTACTCTGAAAAT-ATCAAATGCGAGTTGTTTTCTAGAAAAATGAAATGCAAGTTGCCGTCCATTTCTTGTACTGAAC
AAGATGATGCTCTAGAGCGATGCTTCTTTGCTTTATTTCCTCG--CTGCCCACTGAAGAAACCTTACATGCCTTCTGTGC
ACATTTGGTGTACCATGGAGCTGAAGCTATCATCTTGTCCTGTGACTGAAATAGCAGCGTCAGACTTGGCTGCGGTACAA
AATGTTCTGCATTGCCAAACCGACCAGTCTGTTTTGTTTATCTTGGATTACTTATTTTTCTTAATCTTCAAAGTCCAATA
CATGTGCAGTCATTTTTTAGTAGCTCACATAAAAAGGCATTTCATCATGAACTTCACAGACAAGCATCAATATGTATATG
TGTATTTTTTTCAGAATTTTTTGAAACTTAAATTTTTGTTTTTTGAAGTTTCCAAATAGAGGGCTCCATGAAGCTCAAGC
TCCATTAGG
>chr1B_1
GCACACGA------------------------------------------------------------------------
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-----------------AGCCGCCACTCCTCCAAGTTGTCCTCCACTATGGGGATGCCGACATAGTCAGCCAGTGTAGTG
AAATATGCGTGCCACGCCTGTCGTGCATAAGCACATTGCAAAAGTATGTGGTCGAGAGTATCATCTTCCTAACAGCAAGT
GAAGTAAGGGGA-CTAGCGTCTTGTAGCCCATGCCGGAATCGATGGTCGAAGGTCCATACTCGGTATTAAATAGCAAGCC
ATATGAATATTTTGCATCTA----------------------------------------------AGTGGCGGCTATCT
TTCCCGGACACAGTGAGCAGTGGGCAAACGAATCATGCCCTCTTATAGCATTTTGTAGGTAGATTGCGTCGAGTACTGTC
CAGTTGAACTCCACCTCCACGAGAAAACATCCAGGATAGCACTATTTAGTTGTATGTTACTGACGGCGGACCAAAGGTTC
GAGAATTGTTGTACACCTTGCGGACCGGCACCCACGTAGAAGAACACTATTCAATTTGCATCCGCTCCATTTTCAATAGC
GCTATTCATGGGCAGCTCGTCCCGACGAGCCTGACCCGAAAGCCCGGCATCCAGTCCATGCATGGGCTCGACATTTTTGT
CCAAAGTCCGAATAAAAACCGAATGAGTTTTAAATAATTGTTTTAATCTAAAAACAGGTATAGTTCTATATTTAAATAAC
CTAAATTTAATT--ACTTTAATTAAGAACTGTATTTTTTTTAGAACTATTAAGAACTTCTTTTTTAGAAGAAGAAGAGAA
GAACTATTAAAAACTGTACTGTTCAAATGTTTCTGGCCGGGCCGGATCCGGGTTCGGTATTCTTGCTTCGGGCTTTGTCA
AGCAAAGGCCCGTTCA-AGGGCATGATGCCTTTGCAA--------------------CAGTTTGGGAGTGTGTCCACGTC
AGCGATCCGCGGTGTCCATGTTTAGTTTTCACCCCTGGTTCCCTTCAAACGATGCTTTGCGTTGCAGCAGTTCGAGAGTG
GGCCATACCGTCGCTCCACGTCAGCGATCCGAGGCACTGACCCGTCCACCAATCAGCGCGCAGCTCTCTCCC-CTATAAA
ATCCAGCACCCATCTC---CTCCTTTCCCCACAATCTCAGTCC---------------CCATCTTCCC----TGCCTCCA
GCAAACT--CACACATCTCACCACCGGAGCTCCCAATCCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
ACCGTCGCCGAGAACAAG---------------GTGGAGAAGGCGGCGGAGAAAACCCCCGCCGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCCAAGACGAGGGGCCGGAAGAAGGGCA
GCAAGGCCAAGAAGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGC
GAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGACGGCGTGTAGTTGGTTTCTGTA
TCTGT-----------------------------------ACTCTGCTTATCTATCTATCTGCAAGTAGCGGTAGC----
--AGTA------CCTGTGCTGGGTGATTGCCAACGCTTTGTTGGCTCGTTGGTTGTA-GTAAGAACTCAAGTTGCTG---
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---------
>chr1A_4
AGCGGCAGCCATGGCCCCAAAGGCAGACAAGAAGCCGGCGGCCGAGAACAAGGTGGAGAAGGCGGCGGAGAAGACCCCCG
CGGGGAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCAGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGGAAGACC
CGGGGCAGGAAGAAGGGCAGCAAGGCGAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGT
GCACCCCGACATCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCG
GCGAGTCGGCCAAGCTCGCGAGGTACAACAAGAAGCCCACCATCACCTCTAGGGAGATCCAGACCTCCGTCCGCCTCGTC
CTCCCCGGCGAGCTCGCCAAGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACATCCTCCTAGACTGACGA
CGCGCCGCTTGTTGTGACAGATGTAGTTGGCTGCTGTTAGTCGCTGACTCTGCTTATGTATCTGCAAGTAGTGGTAGGAG
TGGTCGTATGTGTGCCAACGCTTCGTTGGCTAGTTGGTTGTCAGAACTGAAGTTGCTAATCTATCTGAATGTTACTGTTT
CAAGTAGTACTTTTGCTGAATTTCATGGGAAACGCTGAATGCTTGCTGTCGCCTCGTTGGTAGTAAGAACTGAATTCTGT
GGTGCAAACCGAGATTCAGAAATAGTGATGCATTTCTTAACCAACCTCTGGCAAGTTTGTGCTTTCATTTCGTAACAATG
CAAGTCTGTTTGCAGATTCTTGATCCTCCATTATGTTCTATTTCTGCATTAGGTCCAGAGCCTAGTCTTGTTCATATCTA
CTCCTTAAGCTTCGATTAAGAAGTCCAAATACAAGCGAGGGATGCAGATGAAGGAACTGGACAGACAGGGTGTAGTAGGG
AGAATCATGTAAACCACTGGGTGGCAGACATCACAAGAAGAACTCGTACATATTAATACAATTATCTGATGACAGGCTTT
GATAAATCGGCCACAACAATTGGATGGTGTTGCAGAGAGTTTCAGGGGTAGAAGCTACACATGAACTCTTATCAATAAAC
CCCCCGAATAATATACAGATCATATACAACCTAAGACCAATCAAATAGTTTGTCAGGTTTTGGTAATTGTTGAATCAAGC
ACCAAACGCCGCTGCACCCATTCGCTCGCACAGCAAGCTTAAAAAAAATATGAGACCAACCCAAGGGCTAATCCTTGTTG
GCTTTTCTTTATAGCAGAGAAAAGCCGTGAGCACCGCGTGTCACCGGGACTCGAACTCGGGTGGGCTGGCAGCAACCTCA
GCTGCCCAGCCAACGGGTCGACGCCCCGTCCTTGCTCGCACAGCAAGCTTACCAACTAGTCATTGTCGCCAAGGACGTTG
TGACGCTTCTGATTCTGTTAAACATACTAGAGTTAGCATGAAAGGCAAAGGGGGATAAAGCTGACTGCACTTTTGGTGGA
TATTTTGTAGATGCCTAGCCATTTGTTGCACTGTAAGAATCACAAATGCAGAGAACTTTGCACCTCAGATCATATCGGGT
TTTAATGAAGCTAGCCTAAACCCACTACTGGAAGCAAAGTAAATTTCCTTATGTGCAGTGACTCTACTGGCATTTTGGTT
TGTTTGCCTGTGTGGGTGTTGATTTGCTTCAGAAGTGAGATAAGCCTTTCTTCAGACACCTACAGACCAGCAAATGCAAT
GTTTTTAGAGTATGATAGGATTGAACATTCTGTAGACTTTTCAAATTGTCGCAAAGTAAAAGAACTTCCTCACTAGTAGC
CCCAAGGGCCGGTTTAATCATCATGTTAAGCCGAGACTTTAAATATCAGGATTCAACTTTGCATGTGTAGTCCCTAAGGG
CCGATTTAAACTTGTCAAGTTAAAACGGGACTTACATTATTGATAACTCAACATTTCAATAATCTTGACAAATCGGATCA
TTTCACCCAAGTCATCAGATAAATTCATATTTCAAAAGAGCAATAGGCATTAGCCCTCAAGTGCCAAGGATAATACTTGT
ATTGTGCTTGGGACTTTAAAAATTTGTCTTAAAAAAGCAATATGCATTAGCCCCCAAGTGCCAAGGATAATACTTGTATT
GTGCTTGTGACTTCAACACTAATCATACTCATAATATCTTTCCATGTTTGCTTATATCAGAGGCTGAATTGACTGAGAAG
GACTCGCATCTCAATGATCTGAAGGCCAACATTAAAACTCAACAATCTGAGACATCCAAGGCCAAATTAGAACTGAAGGT
TGCTTTAAAGAATATTGAACAGTTTAAACAAAACTTGAACACTGACAAAAACGGCTGGAAGACCGAAAAACGGCTCTATT
GAAGAGAGCTGAAGCCACGCTTAAACCGACGACTGATGAACTAGAAATTATTATGCATTATAGTGGTATTTATTATAAAC
CCGTCTTTCATTGACTTATTTTGTATGTCGCAAGTTCATTATTTCGTGTCACGTAGCTAATAACTTATTCTCTTTAACAA
ATATGTTGCTATTATGCGTATCCGTTCCGAATCGAGCAAACATCCGATATATGTCCATATTCAAGTAGCACCTGCTCCGT
ATTTGTATCATATAACATTCATATTCGCATTTGTATCTATTTTTATGAAAACGTTAATGGGAAGAAGACTATTTTTCAAG
AGTTCATAAATTACGTACCATAATTTTATAGAATGCAGAGAATATGTTACAAGAAATGTCGGAAGCAAAACAAGCTAAGC
TACCCGCAATCATCCGCACCCACTAGAATATTATAGGCTACTGTCTCATAAAGATTTCAAAAAACACCTAGCTCCTGCCG
ATCTCCAAGCCCGAACCTCATCAAGAATGTGGTTTACGAATTGAGGGATATTATGTTGCTGCGTCACATTTCCAAACATC
CTCGCTCTTTCTTTGCTTCCACAAGCTCCAAGCGATAAGAATAACTAGTGAATCAAAACTCTTTCTGATTGGTTTCAGCA
AAGCTTGGCCCGCACGATGCCACCACTCCTCCAGGTTGTCCTCCGCTTTGGGGATGCCGACATGGACAACTAAAGCAGTG
AAATATGCTTGCCACGCCTGTCGTGTATAAACACATTGCATAAGTATGTGATCGAGAGTATCCTCTTCCTGGCAGCAAGT
GAAGCAATTGGAGGTAGCATTTTGTAGCCCATGCCGGAATCGATGGTCGGAGGTCCAAACTCGGTATTGAATAGCAAGTC
AAATGAAGATTTTGCATTTA----------------------------------------------AGCGGCACCAAGCT
TTTTCAAATATAGTGAGCAGTGGGCAAAGGAATCATGCCCTAGCATAGCATTTTGTAGGTAGATTGCGCCGAGTATTGTC
CAGTCGAACTCCACCTCCATGAGAAAACATCCGGAATAGCACTATTTAGTTGTATGTTCCTGACGACAGACCAAAGGTTC
AAGAATTGTTGTAGACCTTGCGGACCGGCACCCACGTGGAAGAACACTATTCAATTTGCATCCGGTCCGTTTTCAGTAGG
CCTATTCATGAGCAGCCCGACCCGACGAGCCTGACCCGAAAGCTCGACATCCGGTCTAGGCATGGGCTCGACTTTTTCGT
CCGAAGCCCGAACAAAGGCCGAATGAGTTTTAAATAATTGATTTAATTTAAGAATCGGTATTGTACTATATTTAAATAAA
CTGAAAGTAATAATACTTTAAATAGGAAGTGTACTTTTTTAGGCAAAAA-------------------------------
-------TAAGAAGTGTACTGTTCA--------------GGCCGGATACGGGTTTGGGATTCTTGCTTCGGGCTTTGTCA
AGCCC-GGCCCATCCAGAGGGCATGATCTGGTTCTAGGAAG---AATGGTCGCTTTGCAGTTGGGGAGTGTG--------
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--------------TCCACGTCATTGATCCGAGGCACTCACCCCTCCACCAATCAGCGCCCACCTCTCCTCCCCTATAAA
ACCCAGCACCCACCCCGCTCCATTCCCCACACCATCTCAGTCC---------------CCACCTTTCC------CCTCCA
GCAAACT--CACACAACCCACCACCGAAGCTCCCAACCCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCGGCCGAGAACAAG---------------GTGGAGAAGGCGGCGGAGAAGACCCCCGCGGGGAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGGAAGACCCGGGGCCGGAAGAAGGGCA
GCAAGGCGAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGC
CCGCTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACATCCTCCTAGACTGACGGCGTGCAGTTGGTTTCTGCA
TCTGCATCTGTACTCT----------------------TGACTCTGCTTATCTATCTATCTGCAAGTAGTGGTGGTGGTA
GTAGTA------CCTGTGCTGGGTGATTGCCAACGCTTTGTTGGCCCGTTGGTTGT----AAGAGCTGAAGTTGCTG---
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>chr1D_4
---CACGA------------------------------------------------------------------------
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-----------------TGCCACCACTCCTGCAGGTTGTCCTCCGCTTTGGGGATGCCGACATGGACAACTAATGTAGTG
AAATATGCTTGCCACACATGTCGTGCATAAACACATTGCATAAGTATGTGGCCGGGAGTATCCTCTTCCT-GCAGCAAGT
GAAGCAATTGGAGGTAGCATTTTGTAGCCCATGCCGGAATCGATGGTCGGAGGTCCAGAGTCGGTATTGAATAGCAAGTC
ACATGAAGATTTTGCATTTAAGCGGCACCAAGCTTTTTCAGATATAGTGAGCGGATTTTGCATTTAAGCGGCACCAAGCT
TTTTCAGATATAGTGAGCAGTGGGCAAACGAATCATGCCCTAGCATAGCATTTTGTAGGTAGATTGCGCCATGTACTGTC
CAGTCGAACTCCACCTCCATGAGAAAACATCCGGGATAGCACTATTTAGCTGTATGTTCCTGACGACGGACCAAAGGTTC
GAGAATTGTTGTAGACCTTGCGGACTCGCACCCACGTGGAAGAACACTATTCAATTGGCATCCTATCCGTTTTCCGTAAG
CCTATTCATGAGCAGCCCGCCCTGACAAGCCTGACCCGAAATCCTGGCATCTGGTCTAGGCATGGGCTCGACCTTTTCGT
CCGAAGCCTGAACAGAGGCCGAATGAGTTTTAAATAATTGTTTTAATTTAAAAACCGGTATAGTACTATATTTAAATAAA
CTGAAAGTAATT--ACTGT---------------------------AAA-------------------------------
-------TAAGAAGTGTACTGTTCAAATGTTTCAGGCCGGGCCGAATACGGGTTTGGGATTCTTGATTCGGGCTTTGTCA
AGCCC-GGCCCGTCCAGAGGGCATGCTCTGGTTCCAGCAAG---AATGCTCGCTTTGCAGTTGGGGAGTGTG--------
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--------------TCCACGTCATCGATCCGGGGCACTCATCCCTCCACCAATCAGCGCCCACCTCTCCTCCCCTATAAA
ACCCAGCCCCCACCCCGCTCCTTTCCCCACACCAACTCAGTCC---------------CTACCTTTCC------CTTCGA
GCAAACTCACACAACCCACACCACCGCAGCCCCCAACCCCACCCGAAGCAGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCGGCCGAGAACAAG---------------GTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGGAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCCAAGACCCGGGGCAGGAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCGGCCAAGCTCGC
GAGGTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGACGGCGTGCAGTTGGTTTCTGCA
TCTGCATCTGTACTGT----------------------TGACTCTGCTTATCTATCTATCCGCAAGTAGTGGTAGC----
--AGTAGTAGCACCTGTGCTGGGTGATTGCCAACGCTTTGTTGGCCCGTTGGTTGT----AAGAACTGAAGTTGCTG---
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>chr1B_7
------GA------------------------------------------------------------------------
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-----------------AGCCACCACTCCTCCAGGTTGTCCTCCACTGTCGGGATGCCAACATGGACAACCAGTGTAGTG
AAATATGCGTGCCATGTCTGTCATGCATAAACACATTGCATAAGTATGTGGTCCAGAGTATCTTCTTCCTAGCAGAAATT
GAAGCAAGGGGAGGTAGCGTCTTGTAGCCCATGCCAGAATTGATGGGCGGAGGTCCAGACTCGATATTGCATAACAAACC
ATATGAAAATTTTGCAT----------------------------------------------TTAAGCGACACCCAGCT
TTTTAAGATACAATGAGCAGTGG-CAAACAAATCATGCACTGGCATGGCATTTTGTATGGTGATTGCGCCGAGTACGGTT
CAGTCGAACTCCACCTCCATGAGAAAACATCCAGGATAGCACTATTTAGTTGTATGTTCCTAACGACAGACCAAAAGTTC
GAGAATTGTTGTAGACCTTGCGGACCGGCACTCATGTAGAAGAACACTATTCAATTGGCACCCGATCCGTTTTCAGTAGG
CCTATTCATGAGCAACCCGACCCGACGAGCCTGACCTGAAAGCCCGACATCCGGTCTAGGCATGGGCTCGACGTTTTCGT
CCGAAGCCCGAGCAAAGGCCGAATGAGTTTTAAATAATTGTTTTAATTTAAAAATTGCTATAGTACTATATTTAAATAAA
CTGAAAGTAATA--ACTTTAAATAAGAAGTGCACTTTTTT----------------------------------------
----------------TACTGTTCAAATGTTTCTGGCCGGGCCGAATCGGGGTTTGGGATTCTTGCTTCGGGCTTTGTCA
AGCCC-GGCCCGTCC-GAGGGCATGATCTGGTTCTAGGAAG---AATGCTTGATTTGCAGTTAGGGAGTGTG--------
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--------------TCCACGTCAGTGATCCGAGGCACTGACCCCTCCACCAATCAGCGCCCACCTCTCCTCCCC-ATAAA
ACCCAGCCCTGACCCCGCTCCATTCCCCACACCATCTCAGTCC---------------CCACTTCCTG------CTTCCA
ACAAACT--CACACAACCCACCACCGAAGATCCCAACTCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCCGCGGCCGAGAACAAG---------------GTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCGAAGACCCGGGGCAGGAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGC
GAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGTCGTCACCAAGTTCACATCCTCCTAGACTGACGGCGTGTTGTTGGTTTCTGCA
TCTGTAGTGTC----------------------------GACTCTGCTTATCTATCTATCTGCAAGTAGTGGTAGC----
--AGTAGTAGTACCTGTGCTGGGTGATTGCCAACGCTTTGTTGGCTCGTTGGTTGATTGTAAGAACTGAAGTTGCTGCTC
T-------------------------------------------------------------------------------
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>chr1B_818
CT------------------------------------------------------------------------------
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---------GTCGCTCCACGTCAGCGATCCGAGGCACTGACCCCTCCACCAATCAGCGCGCACCTCCCCCCCTCTATAAA
ATCCAGCACCCATCTC---CTCCATTCCCCACAATCTCAGTCC---------------TCATCTTCCC----TGCCTCCA
GCAAACT--CACACATCTCACCACCGGAGCTCCCAACCCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCCGTCGCCGAGAACAAG---------------GTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGGAAGACCCGGGGCAGGAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGC
GAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTGCTCCCCGGCGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACATCCTCCTAGACTGATGTCGCGTCGCTTGTTGCGACA
GATGTAGTTGGCTGCTGTTGTCTCCTGTTAGTGGTCGCTGACTCTGCT----TACGTATCTGCAAGTAGTGGTAGG----
--AG-------------------TGGTCGCCAACGCTTCGTTGGCTGGTTGGTTGT----GAGAACTGAAGTTGCTAATC
TATCTGAA------TGTTTCAAGTACTA---GTA---CTTTTGCTGAATTTCGTGGGAATCGCTGAATGCTTGCTGTCGT
CTCGTTGGTAGTAAGACCTGAATTCTGTGGTGCAAACAGT---------AATTCAGAAATAGTGATGCATCTCTGTATTG
GTAGATTTGATTTTTACTAGGGGCTTAAGCTAATCTCTGCCATGT-TGTGCTTTCATTTCTTAGCAATGCAAGCCAAGTT
TGCAGATTCCTGGTTCTCCATCGTCAGGTTCCGTT------TGCGTTAGGTGCAGAGCCTATAGTCTTGTTCAGTCTTGC
GGACTTGGTGAACCTAGCCTTGTTCAATCCTCCATGATTAACATAGCATATCAGCAATAGCTTGGTGTTATACATGAGCG
TGTTACTCTAACAAC-AGCAAATGTGGTTCGTTCTCTAGAAAAATGAAATGCAAGTTGCCGTCCATTTCTTGTACTGAAC
AAGATTAGGCTCTAGAGGGATGCTTCTTTGTTTTATTT--TCGCACTGCCCACTGAAGAAACTTTACATGCCTTGTGTGC
ACATTTGGTGTACCATGGAGCTGAATCTATCATCTTGTCCTGTGGTTGAACTAGCAGCGTCAGACTTGGCTGCTGTACAA
AATGTTCTGCATTGCCAAACCGACCCGTCTGTTTTGTTAATCTTGGATTACTTAATTTTCTTATTCTTCAAAGTCCAATA
CATGTGCAG-----------------------------------------------------------------------
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>chr1B_823
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--------------TCCACGTCACCGATCCGAGGCGCCAACCCCTCCACCAATCAGCGCGCACCTCTCCCCCTCTATAAA
TCCCAGCACCCACCCTCCTCCATTCCCCACACCATCCCAGCCC---------------CCACCTCCCC----TGCCTCCA
GCAAACT--CACAGCCCCCACCACCGAAGCTCCCAACCCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCCGCGGAGAACAAG---------------GTCGAGAAGGCGACGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGCAAGACCCGGGGCCGCAAGAAGGGCA
GCAAGGCGAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCTGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCCGCCAAGCTGGC
CCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGACGATGCGTCGCTTGTTGTGACA
GATGTGGCTGTCTG---------------------------------------ATGTATCTGCAAGTAGAAGTAGT----
--AGTT------CGTGTGGTAGAAGATTGCCAACGCTTTGTTGGCTTCTTGGTTGT----GAGAACTGAA----------
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>chr1D_823
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--------------TCCACGTCAGCGATCCGAGGCGCTACCCCCTCCACCAATTAGCGCCCACCTCTCCCCCTCTATAAA
TCCCAGCACCCATCCTCCTCCATTCCCCACACCATCCCAGCCC---------------CCACCTCCCC----TCCCTCCA
GCAAACT--CACGCATCCCACCACCGAAGCTCCCAACCCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCCGCCGAGAACAAG---------------GTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGCAAGACCCGGGGCCGCAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGC
CCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGAAGATGCGCCGCTTGTTGT----
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>chr2A_848
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---------------------------------------ACCCCTCCACCAATCAGCGCTCACCTCTCCACCTCTATAAG
TC----CATCACCCCCGCTCTGCTTTCCCCAACATCTCCTCCCGCTCCAAGTCCCAAACCCCTTCCGG------CGGCGA
AGCAACA--CACCCTCCCTTCTCCCCCTCCCGA----------------AGCAGCGATGGCCCCCAAGGCGGAGAAGAAG
CCGGCGGCGAAGAAGCCTGCGGAGGAGGAGCCCGCGGCGGAGAAGGCCGAGAAGGCCCCTGCTGGGAAGAAGCCGAGGGC
CGAGAAGCGGGTTCCGGCGGGCAAGACCGCCTCCAAGGAGGGCGGCG---------AGAAGAGGGGCAGGAAGAAGGGCA
---------AGAAGAGCGTCGAGACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCTGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGGCTGCCAAGCTCGC
CCGCTACAACAAGAAGCCCACCATCACCTCCAGGGAGATCCAGACCTCCGTACGCCTCGTCCTCCCTGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTTACCTCCTCTTAGA--------------------------
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>chr1A_895
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------CACCCACCCTCCTCAATTCCCCACACCATCTCAGCCC---------------CCACCTCCCCTGCCTCTCTCCA
GCAAACT--CACGCCCCCCACCACCGAAGCTCCCAACCCCACCCGAAGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCGGCCGAGAGCAAG---------------GTGGAGAAGGCGGCCGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGCAAGACCCGGGGCCGCAAGAAGGGCA
GCAAGGCGAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGGGAGTCGGCCAAGCTCGC
CCGCTACAACAAGAAGCCCACCATCACGTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGGGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACTGACGACGCGCCGCTTGTTGT----
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>chr1B_991
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----------------------------------------------AGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCCGCGGCCGAGAACAAG---------------GTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGGGAAGACCCGGGGCCGGAAGAAGGGCA
GCAAGGCGAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCCGCCAAGCTCGC
CCGCTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCTGTCACCAAGTTCACCTCCTCCTAGATTGACTATGCGTCGCTTGTTGTGATA
GATGTAGTTGGCTGCTGTTA-------------GTCGCTGACTCTGCT----TATGTATCTGCAAGTAGTGGTAGT----
--AGTAGTCGTCTGTGTGCTGGCTGATTGCCAACGTTTCGTTGGCTAGTTGGTTGT----TAGAACTGAAGTTGCTGATC
CATCTGAA------TGTTAATGTTGCCAGTCGTA---TTATTACTGAATTTCATGGGAATCGCTGAATGTTTGCTGACGC
CTTGTTGGTAGTGAGAACTG------------------------------------------------------------
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>chr1D_991
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----------------------------------------------AGCGGCAGCCATGGCCCCCAAGGCAGACAAGAAG
CCGGCGGCCGAGAACAAG---------------GTCGAGAAGGCGGCGGAGAAGACCCCCGCGGGCAAGAAGCCCAAGGC
CGAGAAGCGGCTGCCGGCGGGCAAGACGGCGTCCAAGGAGGCCGGCGGCGAGGCCAAGACCCGGGGCAGGAAGAAGGGCA
GCAAGGCCAAGAAGGGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTGCACCCCGACATCGGCATC
TCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGAAGCTCGCCGGCGAGTCGGCCAAGCTCGC
GAGGTACAACAAGAAGCCCACCATCACCTCCCGGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCA
AGCACGCCGTCTCCGAGGGCACCAAGGCCGTCACCAAGTTCACCTCCTCCTAGACAG------------TTGATGCGACA
GATGTAGTTGGCTGCTGTTGTCTCCTGTTAGTGGTCGCTGACTCTGCT----TATGTATCTGCAAGTAGTGGTAGG----
--AGTGGTCGTCTGTG-----------CGCCAACGCTTCGTTGGCTAGTTGGTTGT----GAGAACTGAAGTTGCTAATC
TATCTGAA------TGTTATTGTTTCAAGTAGTAGTGCTTTTGCTGAATTTCATGGGAATCGCTGAATGCTTGCTGTCGC
CTTGTTGGTAGTAAGAGCTGAATTCTGTGGTGCAAACAGTG---------ATTCAGAAAGAGTGATGCATCTCTGTATTG
GTGAATTTAATTTTTACTAGGGGCTTAAGCTAATCTGCCATGT-T-TGTGCTTTCATTTCTTAGCAATGCAAGTCAGGTT
TGCAGATCCCTGGTTCTCCAT-------------------------------------------TCTTGTTCAGTCTTGC
GGACTTAGTGAACCTAGTCTTGTTCAATCCTCCATGATTAACTTAGCATGTCAGCAGCAGCTTGGTGTTATACATGAGCG
TGTTACTCTGAAAAATAGCAAATGTGA---GTTCTCTAGAAAAATGAAATACAAATTGCCGTCCATTTCTTGTACTGAAC
AGGATGAGGCTCTAGAGCGATGCTTCTTTGTTTTATTTCCTCGCTCTGCCCACTGAAGAAACCTTACATGCCTTCGGCGC
A------------CATGGAGCTGAAGCTATCATCTTGTCTTGTGGTTGAAATAGCAGCGTCAGACTTGGCTGCGGTACAA
AATGTTCTGCATTGCCAAACCCACCCGTCTGTTTTGTTAATCTTGGATTACTTATTTTTCTCAATCTTCAGAGTCCAATA
CATGTGCAG-----------------------------------------------------------------------
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>SNPs
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-----------------------------------------------------------------------------S--
-------S-------------------------------------------S---S-----------------S------
-----------S-------S------------------------------------------------------------
------------------------------------------------------------------------------S-
--SSS---------------------------------------------------------------------------
--S--S-------S---------------------------------------------S---------------S----
---------------------S--------S--S---S------------------------S-------------S---
-----------------S----S--------S---------------------S-----S---------S-----S----
---------S--------------------------------------------------S------------S------
---S-------------------------S--------------------------------------------------
------------------------------------------------S-------S-----------------------
-----------------------------------------SSS------------S-----S---SS------------
--------------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
---S-S--------------------------------------------------------------------------
-------------------SS-------------------------------S---------------------------
-----------------------------------------------------------S--------------------
S-------------------------------------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-------------------------------S---------------------------SS-----------S-------
----------------------S----S-S--------------------------------------------------
-------------------------------------------------------------S------------------
---S----SSSSSS-----------S---------------------------S--------------------------
------------------------S---SS---S---S-S-SSSSSSSS--S-----S-----S------S---------
----S--S--S----------S------S----------------S--------------S--S-S--------------
---------S--SS---SS---S--SSS-SSSS-SSSSSSS---S-----S-------------------------SSS-
--S-S-----------------------------SS---S-----S--------------S------------------S
--------------S--S------S--S-S---S----------------------------------------------
-------S----------------------S-------------------------------------------------
--------------------------------------------SS----------------------------------
-------------------------S------------S-----------------------------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_3964
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------------------------GATCTGGTTCCAGGAAGCCC------------------------------------
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>reverse_5819
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----------------------------------------------------------GAGGGCTCCATGAAGCTCAA--
---------
