Multiple sequence alignment - TraesCS1B01G374900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G374900 chr1B 100.000 2046 0 0 341 2386 605585214 605583169 0.000000e+00 3779.0
1 TraesCS1B01G374900 chr1B 87.290 952 68 23 559 1469 605432363 605433302 0.000000e+00 1038.0
2 TraesCS1B01G374900 chr1B 100.000 544 0 0 2593 3136 605582962 605582419 0.000000e+00 1005.0
3 TraesCS1B01G374900 chr1B 97.000 200 6 0 1601 1800 605433300 605433499 1.390000e-88 337.0
4 TraesCS1B01G374900 chr1B 100.000 58 0 0 1 58 605585554 605585497 1.190000e-19 108.0
5 TraesCS1B01G374900 chr1D 89.613 1059 64 16 447 1469 445041127 445040079 0.000000e+00 1304.0
6 TraesCS1B01G374900 chr1D 88.452 840 62 13 648 1469 444891676 444892498 0.000000e+00 981.0
7 TraesCS1B01G374900 chr1D 93.955 579 21 3 1601 2179 445040081 445039517 0.000000e+00 863.0
8 TraesCS1B01G374900 chr1D 99.024 205 2 0 1601 1805 444892496 444892700 4.940000e-98 368.0
9 TraesCS1B01G374900 chr1A 89.146 949 52 21 545 1469 540287890 540286969 0.000000e+00 1134.0
10 TraesCS1B01G374900 chr1A 87.174 881 49 12 612 1468 540190855 540191695 0.000000e+00 942.0
11 TraesCS1B01G374900 chr1A 91.424 618 30 5 1601 2209 540286971 540286368 0.000000e+00 826.0
12 TraesCS1B01G374900 chr1A 94.561 239 13 0 1573 1811 540256175 540255937 1.370000e-98 370.0
13 TraesCS1B01G374900 chr1A 98.537 205 3 0 1601 1805 540191694 540191898 2.300000e-96 363.0
14 TraesCS1B01G374900 chr3B 94.708 548 23 5 2593 3136 71157163 71156618 0.000000e+00 846.0
15 TraesCS1B01G374900 chr3B 91.728 544 44 1 2593 3136 693472747 693473289 0.000000e+00 754.0
16 TraesCS1B01G374900 chr3B 90.826 545 47 2 2594 3136 228734041 228733498 0.000000e+00 726.0
17 TraesCS1B01G374900 chr3B 90.074 544 50 3 2593 3136 419771602 419771063 0.000000e+00 702.0
18 TraesCS1B01G374900 chr3B 94.944 178 8 1 2209 2386 71157402 71157226 8.570000e-71 278.0
19 TraesCS1B01G374900 chr3B 90.909 55 2 2 1404 1455 117721568 117721622 1.560000e-08 71.3
20 TraesCS1B01G374900 chr5B 93.028 545 36 2 2593 3136 112556858 112557401 0.000000e+00 795.0
21 TraesCS1B01G374900 chr5B 89.890 544 53 2 2593 3136 469486666 469486125 0.000000e+00 699.0
22 TraesCS1B01G374900 chr6B 91.728 544 43 2 2593 3136 696016921 696017462 0.000000e+00 754.0
23 TraesCS1B01G374900 chr6B 90.625 544 50 1 2593 3136 692093601 692093059 0.000000e+00 721.0
24 TraesCS1B01G374900 chr6B 89.706 544 54 2 2593 3136 532268022 532267481 0.000000e+00 693.0
25 TraesCS1B01G374900 chr6B 92.308 52 4 0 447 498 285224637 285224586 1.210000e-09 75.0
26 TraesCS1B01G374900 chr6B 91.667 48 4 0 447 494 623378057 623378104 2.020000e-07 67.6
27 TraesCS1B01G374900 chr3D 92.308 52 4 0 1404 1455 71759819 71759870 1.210000e-09 75.0
28 TraesCS1B01G374900 chr3A 92.308 52 4 0 1404 1455 83978018 83978069 1.210000e-09 75.0
29 TraesCS1B01G374900 chr3A 87.273 55 5 1 2209 2263 21318763 21318711 9.390000e-06 62.1
30 TraesCS1B01G374900 chr5D 90.385 52 5 0 447 498 485358353 485358404 5.610000e-08 69.4
31 TraesCS1B01G374900 chr4B 90.385 52 5 0 447 498 69319971 69320022 5.610000e-08 69.4
32 TraesCS1B01G374900 chr2A 93.478 46 3 0 447 492 389221617 389221662 5.610000e-08 69.4
33 TraesCS1B01G374900 chrUn 91.667 48 4 0 447 494 220215855 220215902 2.020000e-07 67.6
34 TraesCS1B01G374900 chr7B 91.667 48 4 0 447 494 747635550 747635597 2.020000e-07 67.6
35 TraesCS1B01G374900 chr2D 90.385 52 2 1 447 498 308026499 308026547 7.260000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G374900 chr1B 605582419 605585554 3135 True 1630.666667 3779 100.0000 1 3136 3 chr1B.!!$R1 3135
1 TraesCS1B01G374900 chr1B 605432363 605433499 1136 False 687.500000 1038 92.1450 559 1800 2 chr1B.!!$F1 1241
2 TraesCS1B01G374900 chr1D 445039517 445041127 1610 True 1083.500000 1304 91.7840 447 2179 2 chr1D.!!$R1 1732
3 TraesCS1B01G374900 chr1D 444891676 444892700 1024 False 674.500000 981 93.7380 648 1805 2 chr1D.!!$F1 1157
4 TraesCS1B01G374900 chr1A 540286368 540287890 1522 True 980.000000 1134 90.2850 545 2209 2 chr1A.!!$R2 1664
5 TraesCS1B01G374900 chr1A 540190855 540191898 1043 False 652.500000 942 92.8555 612 1805 2 chr1A.!!$F1 1193
6 TraesCS1B01G374900 chr3B 693472747 693473289 542 False 754.000000 754 91.7280 2593 3136 1 chr3B.!!$F2 543
7 TraesCS1B01G374900 chr3B 228733498 228734041 543 True 726.000000 726 90.8260 2594 3136 1 chr3B.!!$R1 542
8 TraesCS1B01G374900 chr3B 419771063 419771602 539 True 702.000000 702 90.0740 2593 3136 1 chr3B.!!$R2 543
9 TraesCS1B01G374900 chr3B 71156618 71157402 784 True 562.000000 846 94.8260 2209 3136 2 chr3B.!!$R3 927
10 TraesCS1B01G374900 chr5B 112556858 112557401 543 False 795.000000 795 93.0280 2593 3136 1 chr5B.!!$F1 543
11 TraesCS1B01G374900 chr5B 469486125 469486666 541 True 699.000000 699 89.8900 2593 3136 1 chr5B.!!$R1 543
12 TraesCS1B01G374900 chr6B 696016921 696017462 541 False 754.000000 754 91.7280 2593 3136 1 chr6B.!!$F2 543
13 TraesCS1B01G374900 chr6B 692093059 692093601 542 True 721.000000 721 90.6250 2593 3136 1 chr6B.!!$R3 543
14 TraesCS1B01G374900 chr6B 532267481 532268022 541 True 693.000000 693 89.7060 2593 3136 1 chr6B.!!$R2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.108138 GCTGGCAGATTCCTACGTGT 60.108 55.0 20.86 0.00 0.0 4.49 F
54 55 0.250640 ACGTGTCTACTGTCCGGACT 60.251 55.0 33.39 18.29 0.0 3.85 F
1571 1640 0.036306 AATTCGGCGTTCCAAGTCCT 59.964 50.0 6.85 0.00 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1621 0.036306 AGGACTTGGAACGCCGAATT 59.964 50.0 0.00 0.0 36.79 2.17 R
1601 1670 0.100146 CGAGCACCGGTAGTAGTTCC 59.900 60.0 6.87 0.0 33.91 3.62 R
2666 2744 1.959899 GAAGCGTGACACTGATGGCG 61.960 60.0 3.68 0.0 36.14 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.612251 CAGGGGTTTGGGTGGGTT 59.388 61.111 0.00 0.00 0.00 4.11
18 19 1.836604 CAGGGGTTTGGGTGGGTTG 60.837 63.158 0.00 0.00 0.00 3.77
19 20 2.525629 GGGGTTTGGGTGGGTTGG 60.526 66.667 0.00 0.00 0.00 3.77
20 21 2.525629 GGGTTTGGGTGGGTTGGG 60.526 66.667 0.00 0.00 0.00 4.12
21 22 2.525629 GGTTTGGGTGGGTTGGGG 60.526 66.667 0.00 0.00 0.00 4.96
22 23 3.238497 GTTTGGGTGGGTTGGGGC 61.238 66.667 0.00 0.00 0.00 5.80
23 24 3.443479 TTTGGGTGGGTTGGGGCT 61.443 61.111 0.00 0.00 0.00 5.19
24 25 3.765257 TTTGGGTGGGTTGGGGCTG 62.765 63.158 0.00 0.00 0.00 4.85
30 31 4.066139 GGGTTGGGGCTGGCAGAT 62.066 66.667 20.86 0.00 0.00 2.90
31 32 2.037847 GGTTGGGGCTGGCAGATT 59.962 61.111 20.86 0.00 0.00 2.40
32 33 2.054453 GGTTGGGGCTGGCAGATTC 61.054 63.158 20.86 6.54 0.00 2.52
33 34 2.054453 GTTGGGGCTGGCAGATTCC 61.054 63.158 20.86 15.63 0.00 3.01
34 35 2.240918 TTGGGGCTGGCAGATTCCT 61.241 57.895 20.86 0.00 0.00 3.36
35 36 0.918799 TTGGGGCTGGCAGATTCCTA 60.919 55.000 20.86 11.09 0.00 2.94
36 37 1.149401 GGGGCTGGCAGATTCCTAC 59.851 63.158 20.86 4.11 0.00 3.18
37 38 1.227674 GGGCTGGCAGATTCCTACG 60.228 63.158 20.86 0.00 0.00 3.51
38 39 1.522569 GGCTGGCAGATTCCTACGT 59.477 57.895 20.86 0.00 0.00 3.57
39 40 0.811616 GGCTGGCAGATTCCTACGTG 60.812 60.000 20.86 0.00 0.00 4.49
40 41 0.108138 GCTGGCAGATTCCTACGTGT 60.108 55.000 20.86 0.00 0.00 4.49
41 42 1.927895 CTGGCAGATTCCTACGTGTC 58.072 55.000 9.42 0.00 0.00 3.67
42 43 1.478510 CTGGCAGATTCCTACGTGTCT 59.521 52.381 9.42 0.00 0.00 3.41
43 44 2.688446 CTGGCAGATTCCTACGTGTCTA 59.312 50.000 9.42 0.00 0.00 2.59
44 45 2.426024 TGGCAGATTCCTACGTGTCTAC 59.574 50.000 0.00 0.00 0.00 2.59
45 46 2.688958 GGCAGATTCCTACGTGTCTACT 59.311 50.000 0.00 0.00 0.00 2.57
46 47 3.489398 GGCAGATTCCTACGTGTCTACTG 60.489 52.174 0.00 2.33 0.00 2.74
47 48 3.128938 GCAGATTCCTACGTGTCTACTGT 59.871 47.826 0.00 0.00 0.00 3.55
48 49 4.731193 GCAGATTCCTACGTGTCTACTGTC 60.731 50.000 0.00 0.00 0.00 3.51
49 50 3.946558 AGATTCCTACGTGTCTACTGTCC 59.053 47.826 0.00 0.00 0.00 4.02
50 51 1.730501 TCCTACGTGTCTACTGTCCG 58.269 55.000 0.00 0.00 0.00 4.79
51 52 0.731417 CCTACGTGTCTACTGTCCGG 59.269 60.000 0.00 0.00 0.00 5.14
52 53 1.676916 CCTACGTGTCTACTGTCCGGA 60.677 57.143 0.00 0.00 0.00 5.14
53 54 1.396301 CTACGTGTCTACTGTCCGGAC 59.604 57.143 28.17 28.17 0.00 4.79
54 55 0.250640 ACGTGTCTACTGTCCGGACT 60.251 55.000 33.39 18.29 0.00 3.85
55 56 0.447011 CGTGTCTACTGTCCGGACTC 59.553 60.000 33.39 10.83 0.00 3.36
56 57 0.810016 GTGTCTACTGTCCGGACTCC 59.190 60.000 33.39 15.44 0.00 3.85
57 58 0.323178 TGTCTACTGTCCGGACTCCC 60.323 60.000 33.39 16.09 0.00 4.30
357 358 2.184322 TCGGATTGCTCAGCGGAC 59.816 61.111 0.00 0.00 0.00 4.79
358 359 2.892425 CGGATTGCTCAGCGGACC 60.892 66.667 0.00 0.00 0.00 4.46
359 360 2.892425 GGATTGCTCAGCGGACCG 60.892 66.667 10.29 10.29 0.00 4.79
360 361 2.125512 GATTGCTCAGCGGACCGT 60.126 61.111 16.73 0.00 0.00 4.83
361 362 1.741770 GATTGCTCAGCGGACCGTT 60.742 57.895 16.73 6.58 0.00 4.44
362 363 0.459585 GATTGCTCAGCGGACCGTTA 60.460 55.000 16.73 0.08 0.00 3.18
363 364 0.739813 ATTGCTCAGCGGACCGTTAC 60.740 55.000 16.73 3.24 0.00 2.50
364 365 2.089887 TTGCTCAGCGGACCGTTACA 62.090 55.000 16.73 5.98 0.00 2.41
365 366 1.805945 GCTCAGCGGACCGTTACAG 60.806 63.158 16.73 9.89 0.00 2.74
366 367 1.880894 CTCAGCGGACCGTTACAGA 59.119 57.895 16.73 2.32 0.00 3.41
367 368 0.456312 CTCAGCGGACCGTTACAGAC 60.456 60.000 16.73 0.00 0.00 3.51
368 369 1.445582 CAGCGGACCGTTACAGACC 60.446 63.158 16.73 0.00 0.00 3.85
369 370 2.125793 GCGGACCGTTACAGACCC 60.126 66.667 16.73 0.00 0.00 4.46
370 371 2.180017 CGGACCGTTACAGACCCG 59.820 66.667 5.48 0.00 0.00 5.28
371 372 2.125793 GGACCGTTACAGACCCGC 60.126 66.667 0.00 0.00 0.00 6.13
372 373 2.505557 GACCGTTACAGACCCGCG 60.506 66.667 0.00 0.00 0.00 6.46
373 374 4.729856 ACCGTTACAGACCCGCGC 62.730 66.667 0.00 0.00 0.00 6.86
374 375 4.430765 CCGTTACAGACCCGCGCT 62.431 66.667 5.56 0.00 0.00 5.92
375 376 3.179265 CGTTACAGACCCGCGCTG 61.179 66.667 5.56 5.50 39.26 5.18
376 377 2.813908 GTTACAGACCCGCGCTGG 60.814 66.667 17.13 17.13 37.69 4.85
377 378 2.992689 TTACAGACCCGCGCTGGA 60.993 61.111 25.71 0.00 42.00 3.86
378 379 2.355986 TTACAGACCCGCGCTGGAT 61.356 57.895 25.71 9.67 42.00 3.41
379 380 2.572095 TTACAGACCCGCGCTGGATG 62.572 60.000 25.71 22.30 42.00 3.51
385 386 4.183686 CCGCGCTGGATGGCTTTG 62.184 66.667 12.11 0.00 42.00 2.77
386 387 3.434319 CGCGCTGGATGGCTTTGT 61.434 61.111 5.56 0.00 0.00 2.83
387 388 2.180017 GCGCTGGATGGCTTTGTG 59.820 61.111 0.00 0.00 0.00 3.33
388 389 2.879907 CGCTGGATGGCTTTGTGG 59.120 61.111 0.00 0.00 0.00 4.17
389 390 1.973281 CGCTGGATGGCTTTGTGGT 60.973 57.895 0.00 0.00 0.00 4.16
390 391 1.885871 GCTGGATGGCTTTGTGGTC 59.114 57.895 0.00 0.00 0.00 4.02
391 392 0.610232 GCTGGATGGCTTTGTGGTCT 60.610 55.000 0.00 0.00 0.00 3.85
392 393 1.340017 GCTGGATGGCTTTGTGGTCTA 60.340 52.381 0.00 0.00 0.00 2.59
393 394 2.636830 CTGGATGGCTTTGTGGTCTAG 58.363 52.381 0.00 0.00 0.00 2.43
394 395 2.237143 CTGGATGGCTTTGTGGTCTAGA 59.763 50.000 0.00 0.00 0.00 2.43
395 396 2.027192 TGGATGGCTTTGTGGTCTAGAC 60.027 50.000 14.87 14.87 0.00 2.59
396 397 2.237392 GGATGGCTTTGTGGTCTAGACT 59.763 50.000 21.88 0.00 0.00 3.24
397 398 2.839486 TGGCTTTGTGGTCTAGACTG 57.161 50.000 21.88 7.33 0.00 3.51
398 399 2.047061 TGGCTTTGTGGTCTAGACTGT 58.953 47.619 21.88 0.00 0.00 3.55
399 400 2.224281 TGGCTTTGTGGTCTAGACTGTG 60.224 50.000 21.88 8.26 0.00 3.66
400 401 1.801178 GCTTTGTGGTCTAGACTGTGC 59.199 52.381 21.88 13.46 0.00 4.57
401 402 2.806745 GCTTTGTGGTCTAGACTGTGCA 60.807 50.000 21.88 8.98 0.00 4.57
402 403 2.820059 TTGTGGTCTAGACTGTGCAG 57.180 50.000 21.88 0.00 0.00 4.41
403 404 1.704641 TGTGGTCTAGACTGTGCAGT 58.295 50.000 21.88 4.31 45.84 4.40
411 412 3.125607 ACTGTGCAGTCCGAACGA 58.874 55.556 0.00 0.00 36.92 3.85
412 413 1.666011 ACTGTGCAGTCCGAACGAT 59.334 52.632 0.00 0.00 36.92 3.73
413 414 0.388649 ACTGTGCAGTCCGAACGATC 60.389 55.000 0.00 0.00 36.92 3.69
414 415 3.973367 ACTGTGCAGTCCGAACGATCG 62.973 57.143 14.88 14.88 40.49 3.69
427 428 3.564027 GATCGCGGGCGGTTTGAG 61.564 66.667 13.60 0.00 40.25 3.02
428 429 4.388499 ATCGCGGGCGGTTTGAGT 62.388 61.111 13.60 0.00 40.25 3.41
431 432 3.723348 GCGGGCGGTTTGAGTGTC 61.723 66.667 0.00 0.00 0.00 3.67
432 433 3.047877 CGGGCGGTTTGAGTGTCC 61.048 66.667 0.00 0.00 0.00 4.02
433 434 3.047877 GGGCGGTTTGAGTGTCCG 61.048 66.667 0.00 0.00 45.94 4.79
436 437 4.043168 CGGTTTGAGTGTCCGCTT 57.957 55.556 0.00 0.00 37.90 4.68
437 438 2.317230 CGGTTTGAGTGTCCGCTTT 58.683 52.632 0.00 0.00 37.90 3.51
438 439 1.504359 CGGTTTGAGTGTCCGCTTTA 58.496 50.000 0.00 0.00 37.90 1.85
439 440 1.459592 CGGTTTGAGTGTCCGCTTTAG 59.540 52.381 0.00 0.00 37.90 1.85
440 441 2.762745 GGTTTGAGTGTCCGCTTTAGA 58.237 47.619 0.00 0.00 0.00 2.10
441 442 2.737252 GGTTTGAGTGTCCGCTTTAGAG 59.263 50.000 0.00 0.00 0.00 2.43
442 443 3.554337 GGTTTGAGTGTCCGCTTTAGAGA 60.554 47.826 0.00 0.00 0.00 3.10
443 444 4.246458 GTTTGAGTGTCCGCTTTAGAGAT 58.754 43.478 0.00 0.00 0.00 2.75
444 445 3.510388 TGAGTGTCCGCTTTAGAGATG 57.490 47.619 0.00 0.00 0.00 2.90
445 446 2.197577 GAGTGTCCGCTTTAGAGATGC 58.802 52.381 0.00 0.00 0.00 3.91
471 472 9.840427 CCTAATGAAACTAATTTGGTGTTGTAG 57.160 33.333 0.00 0.00 0.00 2.74
510 512 9.724839 TTTTCTATAAACTTCCACGAAACTTTG 57.275 29.630 0.00 0.00 0.00 2.77
513 515 8.981647 TCTATAAACTTCCACGAAACTTTGTAC 58.018 33.333 0.00 0.00 0.00 2.90
518 520 7.556733 ACTTCCACGAAACTTTGTACAATAA 57.443 32.000 9.56 0.00 0.00 1.40
519 521 7.987649 ACTTCCACGAAACTTTGTACAATAAA 58.012 30.769 9.56 0.00 0.00 1.40
522 524 9.804758 TTCCACGAAACTTTGTACAATAAAAAT 57.195 25.926 9.56 0.00 0.00 1.82
564 566 4.131649 TGTAGATATTGGTCGTTGTGGG 57.868 45.455 0.00 0.00 0.00 4.61
716 724 2.294512 GTGGCCAAAGAAGACCTTTCTG 59.705 50.000 7.24 0.00 42.88 3.02
751 759 2.409948 GAGACAATTCTCCCACCCTG 57.590 55.000 0.00 0.00 42.42 4.45
876 910 0.984230 AAATCCCCAAGAGCTCACGA 59.016 50.000 17.77 3.64 0.00 4.35
909 954 2.620115 TCCTAGTACAAATCTACCCGCG 59.380 50.000 0.00 0.00 0.00 6.46
1099 1147 2.342406 TCTCTTCCATGTCCTCCCAA 57.658 50.000 0.00 0.00 0.00 4.12
1228 1288 2.775911 TCTCCGAGTACCTCTTCGAA 57.224 50.000 0.00 0.00 0.00 3.71
1253 1313 4.753877 CGTTCTCCGCGTCGCTCA 62.754 66.667 16.36 0.00 0.00 4.26
1469 1538 0.759060 GAACAGCCCAAACCCAAGGT 60.759 55.000 0.00 0.00 37.65 3.50
1471 1540 1.048160 ACAGCCCAAACCCAAGGTTG 61.048 55.000 0.00 0.00 46.20 3.77
1472 1541 1.459348 AGCCCAAACCCAAGGTTGG 60.459 57.895 2.77 2.77 46.20 3.77
1473 1542 1.764454 GCCCAAACCCAAGGTTGGT 60.764 57.895 8.95 0.00 46.20 3.67
1474 1543 0.470268 GCCCAAACCCAAGGTTGGTA 60.470 55.000 8.95 0.00 46.20 3.25
1475 1544 1.334160 CCCAAACCCAAGGTTGGTAC 58.666 55.000 8.95 0.00 46.20 3.34
1476 1545 1.334160 CCAAACCCAAGGTTGGTACC 58.666 55.000 4.43 4.43 46.20 3.34
1488 1557 1.205966 TTGGTACCTATCCCCAACCG 58.794 55.000 14.36 0.00 33.43 4.44
1489 1558 1.339644 TGGTACCTATCCCCAACCGC 61.340 60.000 14.36 0.00 32.69 5.68
1490 1559 1.339644 GGTACCTATCCCCAACCGCA 61.340 60.000 4.06 0.00 0.00 5.69
1491 1560 0.542805 GTACCTATCCCCAACCGCAA 59.457 55.000 0.00 0.00 0.00 4.85
1492 1561 1.065272 GTACCTATCCCCAACCGCAAA 60.065 52.381 0.00 0.00 0.00 3.68
1493 1562 0.406361 ACCTATCCCCAACCGCAAAA 59.594 50.000 0.00 0.00 0.00 2.44
1494 1563 1.006639 ACCTATCCCCAACCGCAAAAT 59.993 47.619 0.00 0.00 0.00 1.82
1495 1564 2.107366 CCTATCCCCAACCGCAAAATT 58.893 47.619 0.00 0.00 0.00 1.82
1496 1565 3.292460 CCTATCCCCAACCGCAAAATTA 58.708 45.455 0.00 0.00 0.00 1.40
1497 1566 3.702045 CCTATCCCCAACCGCAAAATTAA 59.298 43.478 0.00 0.00 0.00 1.40
1498 1567 4.160626 CCTATCCCCAACCGCAAAATTAAA 59.839 41.667 0.00 0.00 0.00 1.52
1499 1568 3.388345 TCCCCAACCGCAAAATTAAAC 57.612 42.857 0.00 0.00 0.00 2.01
1500 1569 2.698797 TCCCCAACCGCAAAATTAAACA 59.301 40.909 0.00 0.00 0.00 2.83
1501 1570 2.803386 CCCCAACCGCAAAATTAAACAC 59.197 45.455 0.00 0.00 0.00 3.32
1502 1571 2.473235 CCCAACCGCAAAATTAAACACG 59.527 45.455 0.00 0.00 0.00 4.49
1503 1572 3.372954 CCAACCGCAAAATTAAACACGA 58.627 40.909 0.00 0.00 0.00 4.35
1504 1573 3.984633 CCAACCGCAAAATTAAACACGAT 59.015 39.130 0.00 0.00 0.00 3.73
1505 1574 4.143431 CCAACCGCAAAATTAAACACGATG 60.143 41.667 0.00 0.00 0.00 3.84
1506 1575 3.570559 ACCGCAAAATTAAACACGATGG 58.429 40.909 0.00 0.00 0.00 3.51
1507 1576 3.253677 ACCGCAAAATTAAACACGATGGA 59.746 39.130 0.00 0.00 0.00 3.41
1508 1577 4.230657 CCGCAAAATTAAACACGATGGAA 58.769 39.130 0.00 0.00 0.00 3.53
1509 1578 4.862018 CCGCAAAATTAAACACGATGGAAT 59.138 37.500 0.00 0.00 0.00 3.01
1510 1579 5.004345 CCGCAAAATTAAACACGATGGAATC 59.996 40.000 0.00 0.00 40.89 2.52
1511 1580 5.570973 CGCAAAATTAAACACGATGGAATCA 59.429 36.000 0.00 0.00 45.97 2.57
1512 1581 6.088749 CGCAAAATTAAACACGATGGAATCAA 59.911 34.615 0.00 0.00 45.97 2.57
1513 1582 7.226772 GCAAAATTAAACACGATGGAATCAAC 58.773 34.615 0.00 0.00 45.97 3.18
1514 1583 7.095857 GCAAAATTAAACACGATGGAATCAACA 60.096 33.333 0.00 0.00 45.97 3.33
1515 1584 7.867445 AAATTAAACACGATGGAATCAACAC 57.133 32.000 0.00 0.00 45.97 3.32
1516 1585 6.817765 ATTAAACACGATGGAATCAACACT 57.182 33.333 0.00 0.00 45.97 3.55
1517 1586 4.749245 AAACACGATGGAATCAACACTC 57.251 40.909 0.00 0.00 45.97 3.51
1518 1587 2.337583 ACACGATGGAATCAACACTCG 58.662 47.619 0.00 0.00 45.97 4.18
1519 1588 2.288825 ACACGATGGAATCAACACTCGT 60.289 45.455 0.00 0.00 45.97 4.18
1520 1589 3.057104 ACACGATGGAATCAACACTCGTA 60.057 43.478 0.00 0.00 45.97 3.43
1521 1590 4.112634 CACGATGGAATCAACACTCGTAT 58.887 43.478 0.00 0.00 45.97 3.06
1522 1591 4.207224 CACGATGGAATCAACACTCGTATC 59.793 45.833 0.00 0.00 45.97 2.24
1523 1592 4.142249 ACGATGGAATCAACACTCGTATCA 60.142 41.667 0.00 0.00 45.97 2.15
1524 1593 4.803613 CGATGGAATCAACACTCGTATCAA 59.196 41.667 0.00 0.00 45.97 2.57
1525 1594 5.463392 CGATGGAATCAACACTCGTATCAAT 59.537 40.000 0.00 0.00 45.97 2.57
1526 1595 6.018751 CGATGGAATCAACACTCGTATCAATT 60.019 38.462 0.00 0.00 45.97 2.32
1527 1596 6.421377 TGGAATCAACACTCGTATCAATTG 57.579 37.500 0.00 0.00 0.00 2.32
1528 1597 6.169800 TGGAATCAACACTCGTATCAATTGA 58.830 36.000 11.26 11.26 0.00 2.57
1529 1598 6.823182 TGGAATCAACACTCGTATCAATTGAT 59.177 34.615 23.75 23.75 38.17 2.57
1530 1599 7.011389 TGGAATCAACACTCGTATCAATTGATC 59.989 37.037 23.95 14.29 36.12 2.92
1531 1600 7.011389 GGAATCAACACTCGTATCAATTGATCA 59.989 37.037 23.95 9.01 36.12 2.92
1532 1601 6.892310 TCAACACTCGTATCAATTGATCAG 57.108 37.500 23.95 18.88 36.05 2.90
1533 1602 6.630071 TCAACACTCGTATCAATTGATCAGA 58.370 36.000 23.95 20.79 36.05 3.27
1534 1603 7.096551 TCAACACTCGTATCAATTGATCAGAA 58.903 34.615 23.95 4.33 36.05 3.02
1535 1604 7.602265 TCAACACTCGTATCAATTGATCAGAAA 59.398 33.333 23.95 3.94 36.05 2.52
1536 1605 8.393366 CAACACTCGTATCAATTGATCAGAAAT 58.607 33.333 23.95 12.17 36.05 2.17
1537 1606 8.498054 ACACTCGTATCAATTGATCAGAAATT 57.502 30.769 23.95 9.14 36.05 1.82
1538 1607 8.607459 ACACTCGTATCAATTGATCAGAAATTC 58.393 33.333 23.95 5.72 36.05 2.17
1539 1608 8.606602 CACTCGTATCAATTGATCAGAAATTCA 58.393 33.333 23.95 0.90 36.05 2.57
1540 1609 9.334947 ACTCGTATCAATTGATCAGAAATTCAT 57.665 29.630 23.95 0.00 36.05 2.57
1541 1610 9.808808 CTCGTATCAATTGATCAGAAATTCATC 57.191 33.333 23.95 0.00 36.05 2.92
1542 1611 8.490355 TCGTATCAATTGATCAGAAATTCATCG 58.510 33.333 23.95 9.85 36.05 3.84
1543 1612 8.490355 CGTATCAATTGATCAGAAATTCATCGA 58.510 33.333 23.95 0.00 36.05 3.59
1544 1613 9.591404 GTATCAATTGATCAGAAATTCATCGAC 57.409 33.333 23.95 8.14 36.05 4.20
1545 1614 7.614124 TCAATTGATCAGAAATTCATCGACA 57.386 32.000 3.38 0.00 0.00 4.35
1546 1615 7.466805 TCAATTGATCAGAAATTCATCGACAC 58.533 34.615 3.38 0.00 0.00 3.67
1547 1616 6.990341 ATTGATCAGAAATTCATCGACACA 57.010 33.333 0.00 0.00 0.00 3.72
1548 1617 6.990341 TTGATCAGAAATTCATCGACACAT 57.010 33.333 0.00 0.00 0.00 3.21
1549 1618 6.990341 TGATCAGAAATTCATCGACACATT 57.010 33.333 0.00 0.00 0.00 2.71
1550 1619 6.778108 TGATCAGAAATTCATCGACACATTG 58.222 36.000 0.00 0.00 0.00 2.82
1551 1620 4.973396 TCAGAAATTCATCGACACATTGC 58.027 39.130 0.00 0.00 0.00 3.56
1552 1621 4.455190 TCAGAAATTCATCGACACATTGCA 59.545 37.500 0.00 0.00 0.00 4.08
1553 1622 5.048852 TCAGAAATTCATCGACACATTGCAA 60.049 36.000 0.00 0.00 0.00 4.08
1554 1623 5.803461 CAGAAATTCATCGACACATTGCAAT 59.197 36.000 5.99 5.99 0.00 3.56
1555 1624 6.309494 CAGAAATTCATCGACACATTGCAATT 59.691 34.615 9.83 0.00 0.00 2.32
1556 1625 6.529125 AGAAATTCATCGACACATTGCAATTC 59.471 34.615 9.83 4.28 0.00 2.17
1557 1626 3.388149 TCATCGACACATTGCAATTCG 57.612 42.857 20.73 20.73 0.00 3.34
1558 1627 2.095692 TCATCGACACATTGCAATTCGG 59.904 45.455 24.30 13.86 0.00 4.30
1559 1628 0.167908 TCGACACATTGCAATTCGGC 59.832 50.000 24.30 14.28 0.00 5.54
1560 1629 1.127571 CGACACATTGCAATTCGGCG 61.128 55.000 19.55 18.02 36.28 6.46
1561 1630 0.109781 GACACATTGCAATTCGGCGT 60.110 50.000 9.83 0.89 36.28 5.68
1562 1631 0.313672 ACACATTGCAATTCGGCGTT 59.686 45.000 9.83 0.00 36.28 4.84
1563 1632 0.984109 CACATTGCAATTCGGCGTTC 59.016 50.000 9.83 0.00 36.28 3.95
1564 1633 0.109319 ACATTGCAATTCGGCGTTCC 60.109 50.000 9.83 0.00 36.28 3.62
1565 1634 0.109365 CATTGCAATTCGGCGTTCCA 60.109 50.000 9.83 0.00 36.28 3.53
1566 1635 0.600557 ATTGCAATTCGGCGTTCCAA 59.399 45.000 5.99 0.00 36.28 3.53
1567 1636 0.039617 TTGCAATTCGGCGTTCCAAG 60.040 50.000 6.85 0.00 36.28 3.61
1568 1637 1.169661 TGCAATTCGGCGTTCCAAGT 61.170 50.000 6.85 0.00 36.28 3.16
1569 1638 0.454452 GCAATTCGGCGTTCCAAGTC 60.454 55.000 6.85 0.00 0.00 3.01
1570 1639 0.168128 CAATTCGGCGTTCCAAGTCC 59.832 55.000 6.85 0.00 0.00 3.85
1571 1640 0.036306 AATTCGGCGTTCCAAGTCCT 59.964 50.000 6.85 0.00 0.00 3.85
1572 1641 0.673644 ATTCGGCGTTCCAAGTCCTG 60.674 55.000 6.85 0.00 0.00 3.86
1573 1642 1.750341 TTCGGCGTTCCAAGTCCTGA 61.750 55.000 6.85 0.00 0.00 3.86
1574 1643 2.027625 CGGCGTTCCAAGTCCTGAC 61.028 63.158 0.00 0.00 0.00 3.51
1575 1644 2.027625 GGCGTTCCAAGTCCTGACG 61.028 63.158 0.00 0.00 36.20 4.35
1576 1645 1.006571 GCGTTCCAAGTCCTGACGA 60.007 57.895 0.00 0.00 35.90 4.20
1577 1646 1.009389 GCGTTCCAAGTCCTGACGAG 61.009 60.000 0.00 0.00 35.90 4.18
1578 1647 1.009389 CGTTCCAAGTCCTGACGAGC 61.009 60.000 0.00 0.00 35.90 5.03
1579 1648 1.009389 GTTCCAAGTCCTGACGAGCG 61.009 60.000 0.00 0.00 36.20 5.03
1580 1649 1.176619 TTCCAAGTCCTGACGAGCGA 61.177 55.000 0.00 0.00 36.20 4.93
1581 1650 1.153939 CCAAGTCCTGACGAGCGAG 60.154 63.158 0.00 0.00 36.20 5.03
1582 1651 1.803519 CAAGTCCTGACGAGCGAGC 60.804 63.158 0.00 0.00 36.20 5.03
1583 1652 2.268802 AAGTCCTGACGAGCGAGCA 61.269 57.895 0.00 0.00 36.20 4.26
1584 1653 1.599606 AAGTCCTGACGAGCGAGCAT 61.600 55.000 0.00 0.00 36.20 3.79
1585 1654 1.153745 GTCCTGACGAGCGAGCATT 60.154 57.895 0.00 0.00 0.00 3.56
1586 1655 0.737715 GTCCTGACGAGCGAGCATTT 60.738 55.000 0.00 0.00 0.00 2.32
1587 1656 0.737367 TCCTGACGAGCGAGCATTTG 60.737 55.000 0.00 0.00 0.00 2.32
1588 1657 1.699656 CCTGACGAGCGAGCATTTGG 61.700 60.000 0.00 0.00 0.00 3.28
1589 1658 1.005037 TGACGAGCGAGCATTTGGT 60.005 52.632 0.00 0.00 0.00 3.67
1590 1659 1.291184 TGACGAGCGAGCATTTGGTG 61.291 55.000 0.00 0.00 0.00 4.17
1591 1660 1.291877 GACGAGCGAGCATTTGGTGT 61.292 55.000 0.00 0.00 0.00 4.16
1592 1661 1.133253 CGAGCGAGCATTTGGTGTG 59.867 57.895 0.00 0.00 0.00 3.82
1593 1662 1.568612 CGAGCGAGCATTTGGTGTGT 61.569 55.000 0.00 0.00 0.00 3.72
1594 1663 0.110056 GAGCGAGCATTTGGTGTGTG 60.110 55.000 0.00 0.00 0.00 3.82
1595 1664 1.730547 GCGAGCATTTGGTGTGTGC 60.731 57.895 0.00 0.00 39.10 4.57
1596 1665 1.440850 CGAGCATTTGGTGTGTGCG 60.441 57.895 0.00 0.00 43.37 5.34
1597 1666 1.654220 GAGCATTTGGTGTGTGCGT 59.346 52.632 0.00 0.00 43.37 5.24
1598 1667 0.661187 GAGCATTTGGTGTGTGCGTG 60.661 55.000 0.00 0.00 43.37 5.34
1599 1668 1.065600 GCATTTGGTGTGTGCGTGT 59.934 52.632 0.00 0.00 0.00 4.49
1600 1669 0.309302 GCATTTGGTGTGTGCGTGTA 59.691 50.000 0.00 0.00 0.00 2.90
1601 1670 1.662876 GCATTTGGTGTGTGCGTGTAG 60.663 52.381 0.00 0.00 0.00 2.74
1602 1671 1.069296 CATTTGGTGTGTGCGTGTAGG 60.069 52.381 0.00 0.00 0.00 3.18
1824 1894 2.826128 CTGAGTAGACTAGCCACCAACA 59.174 50.000 0.00 0.00 0.00 3.33
1861 1931 4.760757 GCACGGGGCTTCTATCTC 57.239 61.111 0.00 0.00 40.25 2.75
1868 1938 0.180406 GGGCTTCTATCTCGGCCAAA 59.820 55.000 2.24 0.00 45.68 3.28
1869 1939 1.408266 GGGCTTCTATCTCGGCCAAAA 60.408 52.381 2.24 0.00 45.68 2.44
1993 2063 7.539034 TTTTGGATCGATCTGTCCATATAGA 57.461 36.000 23.96 0.00 43.61 1.98
2030 2100 2.422832 CTCCCCGTCTTGTACTAGTGTC 59.577 54.545 5.39 0.00 0.00 3.67
2038 2108 5.380651 GTCTTGTACTAGTGTCGTGTACAG 58.619 45.833 5.39 0.00 44.51 2.74
2088 2158 0.526954 CCCTCCCGACGAATGTAACG 60.527 60.000 0.00 0.00 0.00 3.18
2203 2281 2.303537 GGTTGTACGTGCACAATTTCG 58.696 47.619 18.64 3.88 40.36 3.46
2242 2320 2.531942 AAGGCCTCTCCCCGGTTT 60.532 61.111 5.23 0.00 34.51 3.27
2288 2366 7.803279 AAAGAGTCTTAAACCACTACAAAGG 57.197 36.000 5.65 0.00 0.00 3.11
2320 2398 9.487790 TTCATGGTCCAAATTTAAAACAGATTC 57.512 29.630 0.00 0.00 0.00 2.52
2666 2744 0.603065 GGGCTGTTCACCATGGTTTC 59.397 55.000 16.84 9.15 0.00 2.78
2763 2843 1.215173 CCAGCATCCAATCCAGGGTTA 59.785 52.381 0.00 0.00 0.00 2.85
2833 2913 3.737850 CCAGAGCACTCAAGAACTCTTT 58.262 45.455 0.00 0.00 37.40 2.52
3057 3138 3.564225 CACAGACTCAAAGTTTGTACCCC 59.436 47.826 15.08 2.66 40.98 4.95
3090 3172 6.633500 TGGAAAAAGAGATTGACAAACGAT 57.367 33.333 0.00 0.00 0.00 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.836604 CAACCCACCCAAACCCCTG 60.837 63.158 0.00 0.00 0.00 4.45
1 2 2.612251 CAACCCACCCAAACCCCT 59.388 61.111 0.00 0.00 0.00 4.79
2 3 2.525629 CCAACCCACCCAAACCCC 60.526 66.667 0.00 0.00 0.00 4.95
3 4 2.525629 CCCAACCCACCCAAACCC 60.526 66.667 0.00 0.00 0.00 4.11
4 5 2.525629 CCCCAACCCACCCAAACC 60.526 66.667 0.00 0.00 0.00 3.27
5 6 3.238497 GCCCCAACCCACCCAAAC 61.238 66.667 0.00 0.00 0.00 2.93
6 7 3.443479 AGCCCCAACCCACCCAAA 61.443 61.111 0.00 0.00 0.00 3.28
7 8 4.232061 CAGCCCCAACCCACCCAA 62.232 66.667 0.00 0.00 0.00 4.12
13 14 3.607084 AATCTGCCAGCCCCAACCC 62.607 63.158 0.00 0.00 0.00 4.11
14 15 2.037847 AATCTGCCAGCCCCAACC 59.962 61.111 0.00 0.00 0.00 3.77
15 16 2.054453 GGAATCTGCCAGCCCCAAC 61.054 63.158 0.00 0.00 0.00 3.77
16 17 0.918799 TAGGAATCTGCCAGCCCCAA 60.919 55.000 0.00 0.00 0.00 4.12
17 18 1.307778 TAGGAATCTGCCAGCCCCA 60.308 57.895 0.00 0.00 0.00 4.96
18 19 1.149401 GTAGGAATCTGCCAGCCCC 59.851 63.158 0.00 0.00 0.00 5.80
19 20 1.227674 CGTAGGAATCTGCCAGCCC 60.228 63.158 0.00 0.00 0.00 5.19
20 21 0.811616 CACGTAGGAATCTGCCAGCC 60.812 60.000 0.00 0.00 0.00 4.85
21 22 0.108138 ACACGTAGGAATCTGCCAGC 60.108 55.000 0.00 0.00 0.00 4.85
22 23 1.478510 AGACACGTAGGAATCTGCCAG 59.521 52.381 0.00 0.00 0.00 4.85
23 24 1.557099 AGACACGTAGGAATCTGCCA 58.443 50.000 0.00 0.00 0.00 4.92
24 25 2.688958 AGTAGACACGTAGGAATCTGCC 59.311 50.000 0.00 0.00 0.00 4.85
25 26 3.128938 ACAGTAGACACGTAGGAATCTGC 59.871 47.826 0.00 0.00 0.00 4.26
26 27 4.201930 GGACAGTAGACACGTAGGAATCTG 60.202 50.000 0.00 0.00 0.00 2.90
27 28 3.946558 GGACAGTAGACACGTAGGAATCT 59.053 47.826 0.00 0.00 0.00 2.40
28 29 3.242673 CGGACAGTAGACACGTAGGAATC 60.243 52.174 0.00 0.00 0.00 2.52
29 30 2.681848 CGGACAGTAGACACGTAGGAAT 59.318 50.000 0.00 0.00 0.00 3.01
30 31 2.079158 CGGACAGTAGACACGTAGGAA 58.921 52.381 0.00 0.00 0.00 3.36
31 32 1.676916 CCGGACAGTAGACACGTAGGA 60.677 57.143 0.00 0.00 0.00 2.94
32 33 0.731417 CCGGACAGTAGACACGTAGG 59.269 60.000 0.00 0.00 0.00 3.18
33 34 1.396301 GTCCGGACAGTAGACACGTAG 59.604 57.143 29.75 0.00 0.00 3.51
34 35 1.002430 AGTCCGGACAGTAGACACGTA 59.998 52.381 35.00 0.00 32.82 3.57
35 36 0.250640 AGTCCGGACAGTAGACACGT 60.251 55.000 35.00 8.65 32.82 4.49
36 37 0.447011 GAGTCCGGACAGTAGACACG 59.553 60.000 35.00 0.00 32.82 4.49
37 38 0.810016 GGAGTCCGGACAGTAGACAC 59.190 60.000 35.00 14.83 32.82 3.67
38 39 0.323178 GGGAGTCCGGACAGTAGACA 60.323 60.000 35.00 0.00 32.82 3.41
39 40 2.491291 GGGAGTCCGGACAGTAGAC 58.509 63.158 35.00 17.40 0.00 2.59
340 341 2.184322 GTCCGCTGAGCAATCCGA 59.816 61.111 4.88 0.00 0.00 4.55
341 342 2.892425 GGTCCGCTGAGCAATCCG 60.892 66.667 4.88 0.00 38.87 4.18
342 343 2.892425 CGGTCCGCTGAGCAATCC 60.892 66.667 4.88 1.89 38.96 3.01
343 344 0.459585 TAACGGTCCGCTGAGCAATC 60.460 55.000 12.28 0.00 38.96 2.67
344 345 0.739813 GTAACGGTCCGCTGAGCAAT 60.740 55.000 12.28 0.00 38.96 3.56
345 346 1.373748 GTAACGGTCCGCTGAGCAA 60.374 57.895 12.28 0.00 38.96 3.91
346 347 2.260434 GTAACGGTCCGCTGAGCA 59.740 61.111 12.28 0.00 38.96 4.26
347 348 1.805945 CTGTAACGGTCCGCTGAGC 60.806 63.158 12.28 0.00 35.63 4.26
348 349 0.456312 GTCTGTAACGGTCCGCTGAG 60.456 60.000 12.28 2.45 0.00 3.35
349 350 1.582968 GTCTGTAACGGTCCGCTGA 59.417 57.895 12.28 1.95 0.00 4.26
350 351 1.445582 GGTCTGTAACGGTCCGCTG 60.446 63.158 12.28 0.00 0.00 5.18
351 352 2.643232 GGGTCTGTAACGGTCCGCT 61.643 63.158 12.28 0.52 0.00 5.52
352 353 2.125793 GGGTCTGTAACGGTCCGC 60.126 66.667 12.28 0.00 0.00 5.54
353 354 2.180017 CGGGTCTGTAACGGTCCG 59.820 66.667 10.48 10.48 0.00 4.79
354 355 2.125793 GCGGGTCTGTAACGGTCC 60.126 66.667 0.00 0.00 0.00 4.46
355 356 2.505557 CGCGGGTCTGTAACGGTC 60.506 66.667 0.00 0.00 0.00 4.79
356 357 4.729856 GCGCGGGTCTGTAACGGT 62.730 66.667 8.83 0.00 0.00 4.83
357 358 4.430765 AGCGCGGGTCTGTAACGG 62.431 66.667 8.83 0.00 0.00 4.44
358 359 3.179265 CAGCGCGGGTCTGTAACG 61.179 66.667 8.83 0.00 0.00 3.18
359 360 2.573609 ATCCAGCGCGGGTCTGTAAC 62.574 60.000 26.04 0.00 34.36 2.50
360 361 2.355986 ATCCAGCGCGGGTCTGTAA 61.356 57.895 26.04 6.14 34.36 2.41
361 362 2.758327 ATCCAGCGCGGGTCTGTA 60.758 61.111 26.04 6.94 34.36 2.74
362 363 4.457496 CATCCAGCGCGGGTCTGT 62.457 66.667 26.04 8.43 34.36 3.41
368 369 4.183686 CAAAGCCATCCAGCGCGG 62.184 66.667 8.83 11.37 38.01 6.46
369 370 3.434319 ACAAAGCCATCCAGCGCG 61.434 61.111 0.00 0.00 38.01 6.86
370 371 2.180017 CACAAAGCCATCCAGCGC 59.820 61.111 0.00 0.00 38.01 5.92
371 372 1.926511 GACCACAAAGCCATCCAGCG 61.927 60.000 0.00 0.00 38.01 5.18
372 373 0.610232 AGACCACAAAGCCATCCAGC 60.610 55.000 0.00 0.00 0.00 4.85
373 374 2.237143 TCTAGACCACAAAGCCATCCAG 59.763 50.000 0.00 0.00 0.00 3.86
374 375 2.027192 GTCTAGACCACAAAGCCATCCA 60.027 50.000 12.13 0.00 0.00 3.41
375 376 2.237392 AGTCTAGACCACAAAGCCATCC 59.763 50.000 19.38 0.00 0.00 3.51
376 377 3.265791 CAGTCTAGACCACAAAGCCATC 58.734 50.000 19.38 0.00 0.00 3.51
377 378 2.639839 ACAGTCTAGACCACAAAGCCAT 59.360 45.455 19.38 0.00 0.00 4.40
378 379 2.047061 ACAGTCTAGACCACAAAGCCA 58.953 47.619 19.38 0.00 0.00 4.75
379 380 2.417719 CACAGTCTAGACCACAAAGCC 58.582 52.381 19.38 0.00 0.00 4.35
380 381 1.801178 GCACAGTCTAGACCACAAAGC 59.199 52.381 19.38 11.13 0.00 3.51
381 382 3.062763 CTGCACAGTCTAGACCACAAAG 58.937 50.000 19.38 8.44 0.00 2.77
382 383 2.434336 ACTGCACAGTCTAGACCACAAA 59.566 45.455 19.38 2.39 36.92 2.83
383 384 2.039418 ACTGCACAGTCTAGACCACAA 58.961 47.619 19.38 1.33 36.92 3.33
384 385 1.704641 ACTGCACAGTCTAGACCACA 58.295 50.000 19.38 11.15 36.92 4.17
394 395 0.388649 GATCGTTCGGACTGCACAGT 60.389 55.000 2.22 2.22 45.84 3.55
395 396 1.406219 CGATCGTTCGGACTGCACAG 61.406 60.000 7.03 0.00 41.74 3.66
396 397 1.443702 CGATCGTTCGGACTGCACA 60.444 57.895 7.03 0.00 41.74 4.57
397 398 2.789203 GCGATCGTTCGGACTGCAC 61.789 63.158 17.81 0.00 45.59 4.57
398 399 2.506217 GCGATCGTTCGGACTGCA 60.506 61.111 17.81 0.00 45.59 4.41
399 400 3.607987 CGCGATCGTTCGGACTGC 61.608 66.667 17.81 0.00 45.59 4.40
410 411 3.564027 CTCAAACCGCCCGCGATC 61.564 66.667 8.23 0.00 42.83 3.69
411 412 4.388499 ACTCAAACCGCCCGCGAT 62.388 61.111 8.23 0.00 42.83 4.58
414 415 3.723348 GACACTCAAACCGCCCGC 61.723 66.667 0.00 0.00 0.00 6.13
415 416 3.047877 GGACACTCAAACCGCCCG 61.048 66.667 0.00 0.00 0.00 6.13
416 417 3.047877 CGGACACTCAAACCGCCC 61.048 66.667 0.00 0.00 40.19 6.13
420 421 2.737252 CTCTAAAGCGGACACTCAAACC 59.263 50.000 0.00 0.00 0.00 3.27
421 422 3.650139 TCTCTAAAGCGGACACTCAAAC 58.350 45.455 0.00 0.00 0.00 2.93
422 423 4.245660 CATCTCTAAAGCGGACACTCAAA 58.754 43.478 0.00 0.00 0.00 2.69
423 424 3.849911 CATCTCTAAAGCGGACACTCAA 58.150 45.455 0.00 0.00 0.00 3.02
424 425 2.417379 GCATCTCTAAAGCGGACACTCA 60.417 50.000 0.00 0.00 0.00 3.41
425 426 2.197577 GCATCTCTAAAGCGGACACTC 58.802 52.381 0.00 0.00 0.00 3.51
426 427 1.134670 GGCATCTCTAAAGCGGACACT 60.135 52.381 0.00 0.00 0.00 3.55
427 428 1.134670 AGGCATCTCTAAAGCGGACAC 60.135 52.381 0.00 0.00 0.00 3.67
428 429 1.195115 AGGCATCTCTAAAGCGGACA 58.805 50.000 0.00 0.00 0.00 4.02
429 430 3.454371 TTAGGCATCTCTAAAGCGGAC 57.546 47.619 0.00 0.00 0.00 4.79
430 431 3.641436 TCATTAGGCATCTCTAAAGCGGA 59.359 43.478 0.00 0.00 33.54 5.54
431 432 3.995199 TCATTAGGCATCTCTAAAGCGG 58.005 45.455 0.00 0.00 33.54 5.52
432 433 5.525378 AGTTTCATTAGGCATCTCTAAAGCG 59.475 40.000 0.00 0.00 33.54 4.68
433 434 6.934048 AGTTTCATTAGGCATCTCTAAAGC 57.066 37.500 0.00 0.00 33.54 3.51
437 438 9.342308 CCAAATTAGTTTCATTAGGCATCTCTA 57.658 33.333 0.00 0.00 0.00 2.43
438 439 7.836183 ACCAAATTAGTTTCATTAGGCATCTCT 59.164 33.333 0.00 0.00 0.00 3.10
439 440 7.917505 CACCAAATTAGTTTCATTAGGCATCTC 59.082 37.037 0.00 0.00 0.00 2.75
440 441 7.397192 ACACCAAATTAGTTTCATTAGGCATCT 59.603 33.333 0.00 0.00 0.00 2.90
441 442 7.547227 ACACCAAATTAGTTTCATTAGGCATC 58.453 34.615 0.00 0.00 0.00 3.91
442 443 7.480760 ACACCAAATTAGTTTCATTAGGCAT 57.519 32.000 0.00 0.00 0.00 4.40
443 444 6.909550 ACACCAAATTAGTTTCATTAGGCA 57.090 33.333 0.00 0.00 0.00 4.75
444 445 7.151976 ACAACACCAAATTAGTTTCATTAGGC 58.848 34.615 0.00 0.00 0.00 3.93
445 446 9.840427 CTACAACACCAAATTAGTTTCATTAGG 57.160 33.333 0.00 0.00 0.00 2.69
487 489 8.981647 GTACAAAGTTTCGTGGAAGTTTATAGA 58.018 33.333 0.00 0.00 32.44 1.98
540 542 5.116180 CCACAACGACCAATATCTACATGT 58.884 41.667 2.69 2.69 0.00 3.21
542 544 4.703897 CCCACAACGACCAATATCTACAT 58.296 43.478 0.00 0.00 0.00 2.29
564 566 1.065551 GCCCACACATTCTAAATCGGC 59.934 52.381 0.00 0.00 0.00 5.54
716 724 1.531578 GTCTCCGGAACAAAGACTTGC 59.468 52.381 5.23 0.00 36.82 4.01
876 910 1.934459 TACTAGGAGGAGGCGCTGGT 61.934 60.000 7.64 0.00 0.00 4.00
909 954 0.407918 TGGGTTGGGGAGTGGATTTC 59.592 55.000 0.00 0.00 0.00 2.17
1194 1254 1.153745 GAGATGTCGAACTGCGCCT 60.154 57.895 4.18 0.00 40.61 5.52
1469 1538 1.205966 CGGTTGGGGATAGGTACCAA 58.794 55.000 15.94 0.00 41.66 3.67
1470 1539 1.339644 GCGGTTGGGGATAGGTACCA 61.340 60.000 15.94 0.00 0.00 3.25
1471 1540 1.339644 TGCGGTTGGGGATAGGTACC 61.340 60.000 2.73 2.73 0.00 3.34
1472 1541 0.542805 TTGCGGTTGGGGATAGGTAC 59.457 55.000 0.00 0.00 0.00 3.34
1473 1542 1.287217 TTTGCGGTTGGGGATAGGTA 58.713 50.000 0.00 0.00 0.00 3.08
1474 1543 0.406361 TTTTGCGGTTGGGGATAGGT 59.594 50.000 0.00 0.00 0.00 3.08
1475 1544 1.775385 ATTTTGCGGTTGGGGATAGG 58.225 50.000 0.00 0.00 0.00 2.57
1476 1545 4.993029 TTAATTTTGCGGTTGGGGATAG 57.007 40.909 0.00 0.00 0.00 2.08
1477 1546 4.527038 TGTTTAATTTTGCGGTTGGGGATA 59.473 37.500 0.00 0.00 0.00 2.59
1478 1547 3.325135 TGTTTAATTTTGCGGTTGGGGAT 59.675 39.130 0.00 0.00 0.00 3.85
1479 1548 2.698797 TGTTTAATTTTGCGGTTGGGGA 59.301 40.909 0.00 0.00 0.00 4.81
1480 1549 2.803386 GTGTTTAATTTTGCGGTTGGGG 59.197 45.455 0.00 0.00 0.00 4.96
1481 1550 2.473235 CGTGTTTAATTTTGCGGTTGGG 59.527 45.455 0.00 0.00 0.00 4.12
1482 1551 3.372954 TCGTGTTTAATTTTGCGGTTGG 58.627 40.909 0.00 0.00 0.00 3.77
1483 1552 4.143431 CCATCGTGTTTAATTTTGCGGTTG 60.143 41.667 0.00 0.00 0.00 3.77
1484 1553 3.984633 CCATCGTGTTTAATTTTGCGGTT 59.015 39.130 0.00 0.00 0.00 4.44
1485 1554 3.253677 TCCATCGTGTTTAATTTTGCGGT 59.746 39.130 0.00 0.00 0.00 5.68
1486 1555 3.827625 TCCATCGTGTTTAATTTTGCGG 58.172 40.909 0.00 0.00 0.00 5.69
1487 1556 5.570973 TGATTCCATCGTGTTTAATTTTGCG 59.429 36.000 0.00 0.00 0.00 4.85
1488 1557 6.942886 TGATTCCATCGTGTTTAATTTTGC 57.057 33.333 0.00 0.00 0.00 3.68
1489 1558 8.213812 GTGTTGATTCCATCGTGTTTAATTTTG 58.786 33.333 0.00 0.00 0.00 2.44
1490 1559 8.141268 AGTGTTGATTCCATCGTGTTTAATTTT 58.859 29.630 0.00 0.00 0.00 1.82
1491 1560 7.657336 AGTGTTGATTCCATCGTGTTTAATTT 58.343 30.769 0.00 0.00 0.00 1.82
1492 1561 7.214467 AGTGTTGATTCCATCGTGTTTAATT 57.786 32.000 0.00 0.00 0.00 1.40
1493 1562 6.402118 CGAGTGTTGATTCCATCGTGTTTAAT 60.402 38.462 0.00 0.00 0.00 1.40
1494 1563 5.107259 CGAGTGTTGATTCCATCGTGTTTAA 60.107 40.000 0.00 0.00 0.00 1.52
1495 1564 4.387559 CGAGTGTTGATTCCATCGTGTTTA 59.612 41.667 0.00 0.00 0.00 2.01
1496 1565 3.186409 CGAGTGTTGATTCCATCGTGTTT 59.814 43.478 0.00 0.00 0.00 2.83
1497 1566 2.736721 CGAGTGTTGATTCCATCGTGTT 59.263 45.455 0.00 0.00 0.00 3.32
1498 1567 2.288825 ACGAGTGTTGATTCCATCGTGT 60.289 45.455 0.00 0.00 41.39 4.49
1499 1568 2.337583 ACGAGTGTTGATTCCATCGTG 58.662 47.619 0.00 0.00 41.39 4.35
1500 1569 2.743636 ACGAGTGTTGATTCCATCGT 57.256 45.000 0.00 0.00 38.46 3.73
1501 1570 4.359706 TGATACGAGTGTTGATTCCATCG 58.640 43.478 0.00 0.00 36.32 3.84
1502 1571 6.851222 ATTGATACGAGTGTTGATTCCATC 57.149 37.500 0.00 0.00 0.00 3.51
1503 1572 6.823182 TCAATTGATACGAGTGTTGATTCCAT 59.177 34.615 3.38 0.00 0.00 3.41
1504 1573 6.169800 TCAATTGATACGAGTGTTGATTCCA 58.830 36.000 3.38 0.00 0.00 3.53
1505 1574 6.662414 TCAATTGATACGAGTGTTGATTCC 57.338 37.500 3.38 0.00 0.00 3.01
1506 1575 7.909267 TGATCAATTGATACGAGTGTTGATTC 58.091 34.615 20.75 5.09 36.68 2.52
1507 1576 7.765819 TCTGATCAATTGATACGAGTGTTGATT 59.234 33.333 20.75 0.00 36.68 2.57
1508 1577 7.267857 TCTGATCAATTGATACGAGTGTTGAT 58.732 34.615 20.75 0.00 38.56 2.57
1509 1578 6.630071 TCTGATCAATTGATACGAGTGTTGA 58.370 36.000 20.75 6.36 34.37 3.18
1510 1579 6.892310 TCTGATCAATTGATACGAGTGTTG 57.108 37.500 20.75 4.39 34.37 3.33
1511 1580 7.905604 TTTCTGATCAATTGATACGAGTGTT 57.094 32.000 20.75 0.00 34.37 3.32
1512 1581 8.498054 AATTTCTGATCAATTGATACGAGTGT 57.502 30.769 20.75 0.00 34.37 3.55
1513 1582 8.606602 TGAATTTCTGATCAATTGATACGAGTG 58.393 33.333 20.75 7.88 34.37 3.51
1514 1583 8.722480 TGAATTTCTGATCAATTGATACGAGT 57.278 30.769 20.75 9.72 34.37 4.18
1515 1584 9.808808 GATGAATTTCTGATCAATTGATACGAG 57.191 33.333 20.75 15.79 34.37 4.18
1516 1585 8.490355 CGATGAATTTCTGATCAATTGATACGA 58.510 33.333 20.75 16.04 34.37 3.43
1517 1586 8.490355 TCGATGAATTTCTGATCAATTGATACG 58.510 33.333 20.75 14.13 34.37 3.06
1518 1587 9.591404 GTCGATGAATTTCTGATCAATTGATAC 57.409 33.333 20.75 14.18 34.37 2.24
1519 1588 9.328845 TGTCGATGAATTTCTGATCAATTGATA 57.671 29.630 20.75 5.63 34.37 2.15
1520 1589 8.127327 GTGTCGATGAATTTCTGATCAATTGAT 58.873 33.333 20.85 20.85 37.51 2.57
1521 1590 7.119553 TGTGTCGATGAATTTCTGATCAATTGA 59.880 33.333 11.26 11.26 0.00 2.57
1522 1591 7.245604 TGTGTCGATGAATTTCTGATCAATTG 58.754 34.615 0.00 0.00 0.00 2.32
1523 1592 7.381766 TGTGTCGATGAATTTCTGATCAATT 57.618 32.000 0.00 0.00 0.00 2.32
1524 1593 6.990341 TGTGTCGATGAATTTCTGATCAAT 57.010 33.333 0.00 0.00 0.00 2.57
1525 1594 6.990341 ATGTGTCGATGAATTTCTGATCAA 57.010 33.333 0.00 0.00 0.00 2.57
1526 1595 6.676213 GCAATGTGTCGATGAATTTCTGATCA 60.676 38.462 0.00 0.00 0.00 2.92
1527 1596 5.680229 GCAATGTGTCGATGAATTTCTGATC 59.320 40.000 0.00 0.00 0.00 2.92
1528 1597 5.124297 TGCAATGTGTCGATGAATTTCTGAT 59.876 36.000 0.00 0.00 0.00 2.90
1529 1598 4.455190 TGCAATGTGTCGATGAATTTCTGA 59.545 37.500 0.00 0.00 0.00 3.27
1530 1599 4.725359 TGCAATGTGTCGATGAATTTCTG 58.275 39.130 0.00 0.00 0.00 3.02
1531 1600 5.375417 TTGCAATGTGTCGATGAATTTCT 57.625 34.783 0.00 0.00 0.00 2.52
1532 1601 6.505265 CGAATTGCAATGTGTCGATGAATTTC 60.505 38.462 21.76 7.63 33.63 2.17
1533 1602 5.286797 CGAATTGCAATGTGTCGATGAATTT 59.713 36.000 21.76 0.00 33.63 1.82
1534 1603 4.794762 CGAATTGCAATGTGTCGATGAATT 59.205 37.500 21.76 0.00 33.63 2.17
1535 1604 4.345288 CGAATTGCAATGTGTCGATGAAT 58.655 39.130 21.76 0.00 33.63 2.57
1536 1605 3.426025 CCGAATTGCAATGTGTCGATGAA 60.426 43.478 25.91 0.00 33.63 2.57
1537 1606 2.095692 CCGAATTGCAATGTGTCGATGA 59.904 45.455 25.91 0.00 33.63 2.92
1538 1607 2.443387 CCGAATTGCAATGTGTCGATG 58.557 47.619 25.91 11.80 33.63 3.84
1539 1608 1.202177 GCCGAATTGCAATGTGTCGAT 60.202 47.619 25.91 5.51 33.63 3.59
1540 1609 0.167908 GCCGAATTGCAATGTGTCGA 59.832 50.000 25.91 0.00 33.63 4.20
1541 1610 1.127571 CGCCGAATTGCAATGTGTCG 61.128 55.000 20.11 20.11 0.00 4.35
1542 1611 0.109781 ACGCCGAATTGCAATGTGTC 60.110 50.000 13.82 6.11 0.00 3.67
1543 1612 0.313672 AACGCCGAATTGCAATGTGT 59.686 45.000 13.82 10.51 0.00 3.72
1544 1613 0.984109 GAACGCCGAATTGCAATGTG 59.016 50.000 13.82 9.84 0.00 3.21
1545 1614 0.109319 GGAACGCCGAATTGCAATGT 60.109 50.000 13.82 2.88 0.00 2.71
1546 1615 0.109365 TGGAACGCCGAATTGCAATG 60.109 50.000 13.82 2.17 36.79 2.82
1547 1616 0.600557 TTGGAACGCCGAATTGCAAT 59.399 45.000 5.99 5.99 33.12 3.56
1548 1617 0.039617 CTTGGAACGCCGAATTGCAA 60.040 50.000 0.00 0.00 36.20 4.08
1549 1618 1.169661 ACTTGGAACGCCGAATTGCA 61.170 50.000 0.00 0.00 36.79 4.08
1550 1619 0.454452 GACTTGGAACGCCGAATTGC 60.454 55.000 0.00 0.00 36.79 3.56
1551 1620 0.168128 GGACTTGGAACGCCGAATTG 59.832 55.000 0.00 0.00 36.79 2.32
1552 1621 0.036306 AGGACTTGGAACGCCGAATT 59.964 50.000 0.00 0.00 36.79 2.17
1553 1622 0.673644 CAGGACTTGGAACGCCGAAT 60.674 55.000 0.00 0.00 36.79 3.34
1554 1623 1.301401 CAGGACTTGGAACGCCGAA 60.301 57.895 0.00 0.00 36.79 4.30
1555 1624 2.204461 TCAGGACTTGGAACGCCGA 61.204 57.895 0.00 0.00 36.79 5.54
1556 1625 2.027625 GTCAGGACTTGGAACGCCG 61.028 63.158 0.00 0.00 36.79 6.46
1557 1626 2.027625 CGTCAGGACTTGGAACGCC 61.028 63.158 0.00 0.00 0.00 5.68
1558 1627 1.006571 TCGTCAGGACTTGGAACGC 60.007 57.895 0.00 0.00 0.00 4.84
1559 1628 1.009389 GCTCGTCAGGACTTGGAACG 61.009 60.000 0.00 0.00 0.00 3.95
1560 1629 1.009389 CGCTCGTCAGGACTTGGAAC 61.009 60.000 0.00 0.00 0.00 3.62
1561 1630 1.176619 TCGCTCGTCAGGACTTGGAA 61.177 55.000 0.00 0.00 0.00 3.53
1562 1631 1.587043 CTCGCTCGTCAGGACTTGGA 61.587 60.000 0.00 0.00 0.00 3.53
1563 1632 1.153939 CTCGCTCGTCAGGACTTGG 60.154 63.158 0.00 0.00 0.00 3.61
1564 1633 1.803519 GCTCGCTCGTCAGGACTTG 60.804 63.158 0.00 0.00 0.00 3.16
1565 1634 1.599606 ATGCTCGCTCGTCAGGACTT 61.600 55.000 0.00 0.00 0.00 3.01
1566 1635 1.599606 AATGCTCGCTCGTCAGGACT 61.600 55.000 0.00 0.00 0.00 3.85
1567 1636 0.737715 AAATGCTCGCTCGTCAGGAC 60.738 55.000 0.00 0.00 0.00 3.85
1568 1637 0.737367 CAAATGCTCGCTCGTCAGGA 60.737 55.000 0.00 0.00 0.00 3.86
1569 1638 1.699656 CCAAATGCTCGCTCGTCAGG 61.700 60.000 0.00 0.00 0.00 3.86
1570 1639 1.016130 ACCAAATGCTCGCTCGTCAG 61.016 55.000 0.00 0.00 0.00 3.51
1571 1640 1.005037 ACCAAATGCTCGCTCGTCA 60.005 52.632 0.00 0.00 0.00 4.35
1572 1641 1.291877 ACACCAAATGCTCGCTCGTC 61.292 55.000 0.00 0.00 0.00 4.20
1573 1642 1.301716 ACACCAAATGCTCGCTCGT 60.302 52.632 0.00 0.00 0.00 4.18
1574 1643 1.133253 CACACCAAATGCTCGCTCG 59.867 57.895 0.00 0.00 0.00 5.03
1575 1644 0.110056 CACACACCAAATGCTCGCTC 60.110 55.000 0.00 0.00 0.00 5.03
1576 1645 1.951510 CACACACCAAATGCTCGCT 59.048 52.632 0.00 0.00 0.00 4.93
1577 1646 1.730547 GCACACACCAAATGCTCGC 60.731 57.895 0.00 0.00 36.40 5.03
1578 1647 1.440850 CGCACACACCAAATGCTCG 60.441 57.895 0.00 0.00 37.20 5.03
1579 1648 0.661187 CACGCACACACCAAATGCTC 60.661 55.000 0.00 0.00 37.20 4.26
1580 1649 1.359833 CACGCACACACCAAATGCT 59.640 52.632 0.00 0.00 37.20 3.79
1581 1650 0.309302 TACACGCACACACCAAATGC 59.691 50.000 0.00 0.00 35.96 3.56
1582 1651 1.069296 CCTACACGCACACACCAAATG 60.069 52.381 0.00 0.00 0.00 2.32
1583 1652 1.202710 TCCTACACGCACACACCAAAT 60.203 47.619 0.00 0.00 0.00 2.32
1584 1653 0.178301 TCCTACACGCACACACCAAA 59.822 50.000 0.00 0.00 0.00 3.28
1585 1654 0.178301 TTCCTACACGCACACACCAA 59.822 50.000 0.00 0.00 0.00 3.67
1586 1655 0.531090 GTTCCTACACGCACACACCA 60.531 55.000 0.00 0.00 0.00 4.17
1587 1656 0.249741 AGTTCCTACACGCACACACC 60.250 55.000 0.00 0.00 0.00 4.16
1588 1657 2.056577 GTAGTTCCTACACGCACACAC 58.943 52.381 0.00 0.00 36.98 3.82
1589 1658 1.958579 AGTAGTTCCTACACGCACACA 59.041 47.619 4.39 0.00 39.22 3.72
1590 1659 2.719426 AGTAGTTCCTACACGCACAC 57.281 50.000 4.39 0.00 39.22 3.82
1591 1660 2.489329 GGTAGTAGTTCCTACACGCACA 59.511 50.000 4.39 0.00 39.22 4.57
1592 1661 2.476854 CGGTAGTAGTTCCTACACGCAC 60.477 54.545 4.39 0.00 39.22 5.34
1593 1662 1.739466 CGGTAGTAGTTCCTACACGCA 59.261 52.381 4.39 0.00 39.22 5.24
1594 1663 1.064654 CCGGTAGTAGTTCCTACACGC 59.935 57.143 0.00 0.00 39.22 5.34
1595 1664 2.096496 CACCGGTAGTAGTTCCTACACG 59.904 54.545 6.87 5.52 39.22 4.49
1596 1665 2.159324 GCACCGGTAGTAGTTCCTACAC 60.159 54.545 6.87 1.30 39.22 2.90
1597 1666 2.094675 GCACCGGTAGTAGTTCCTACA 58.905 52.381 6.87 0.00 39.22 2.74
1598 1667 2.357323 GAGCACCGGTAGTAGTTCCTAC 59.643 54.545 6.87 0.00 37.23 3.18
1599 1668 2.648059 GAGCACCGGTAGTAGTTCCTA 58.352 52.381 6.87 0.00 0.00 2.94
1600 1669 1.472188 GAGCACCGGTAGTAGTTCCT 58.528 55.000 6.87 0.00 0.00 3.36
1601 1670 0.100146 CGAGCACCGGTAGTAGTTCC 59.900 60.000 6.87 0.00 33.91 3.62
1602 1671 1.089920 TCGAGCACCGGTAGTAGTTC 58.910 55.000 6.87 0.90 39.14 3.01
1811 1880 1.072505 CCCGTTGTTGGTGGCTAGT 59.927 57.895 0.00 0.00 0.00 2.57
1993 2063 2.502130 GGGGAGAGAAGAAAAGGTCGAT 59.498 50.000 0.00 0.00 0.00 3.59
2030 2100 1.855338 CTGCACACTGCTGTACACG 59.145 57.895 0.00 0.00 45.31 4.49
2038 2108 3.969802 GCCCACACTGCACACTGC 61.970 66.667 0.00 0.00 45.29 4.40
2088 2158 3.757493 ACTAGTAGTGTAGTGGAGTGTGC 59.243 47.826 0.85 0.00 31.75 4.57
2225 2303 2.531942 AAACCGGGGAGAGGCCTT 60.532 61.111 6.77 0.00 36.66 4.35
2242 2320 9.527157 TCTTTATGGTTTCATTCTGGTTAATGA 57.473 29.630 0.00 0.00 42.63 2.57
2265 2343 6.896883 ACCTTTGTAGTGGTTTAAGACTCTT 58.103 36.000 0.00 0.00 31.62 2.85
2288 2366 9.406828 GTTTTAAATTTGGACCATGAACTCTAC 57.593 33.333 0.00 0.00 0.00 2.59
2345 2423 7.511959 TTGTGTTTTTAAGTTTTTGCCCTTT 57.488 28.000 0.00 0.00 0.00 3.11
2346 2424 7.391833 TCATTGTGTTTTTAAGTTTTTGCCCTT 59.608 29.630 0.00 0.00 0.00 3.95
2347 2425 6.881602 TCATTGTGTTTTTAAGTTTTTGCCCT 59.118 30.769 0.00 0.00 0.00 5.19
2625 2703 2.573369 GTGTCTACCCTCGCTATCTGA 58.427 52.381 0.00 0.00 0.00 3.27
2666 2744 1.959899 GAAGCGTGACACTGATGGCG 61.960 60.000 3.68 0.00 36.14 5.69
2833 2913 2.325583 AACAAGCAAAGACCGAGTGA 57.674 45.000 0.00 0.00 0.00 3.41
3057 3138 8.811378 GTCAATCTCTTTTTCCAAAAGAACTTG 58.189 33.333 17.34 17.34 36.01 3.16
3090 3172 7.620880 ACTGTGTAGTAGCCAAGAATATTTGA 58.379 34.615 0.00 0.00 34.74 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.