>input_sequence_59701
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-------AAACTCGGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTACCAACAGCAGGCGCAGGCGGTGGGCGACGGC
TGCTACTTCTCTTCCATGTCCTCCCAATTCTCCCACGGGGGAATCAGCTCCACCTCCTCCAGCCCGGCCTCCAGCTTCTC
CGCCGCGCTCAGCGCCACG------------CCGGCGATCGCCGCCGACCCCGAGGCGCAGTTCGACATCTCCGAGTACC
TCTTCGAAGAGGGCGCGTTCTCCGCGTCGCTCACGCCCGTCGTCCCCGTGCCGGCCGTTGCCGCGGCTGGTGCGAGTTCG
GCGACCGCGGTGACTGCGAGGAGCGCTGCCGAGT---------CGGCGGCGGCGGCGGAGCGGCCGCGGACGGAGCGCAT
CGCGTTCCGGACGAGGTCGGAGATCGAGATCCTCGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGTCCGTCAAGA
ACAGCCCAAACCCAAGGTTGGTACCTATCCCCAACCGCAAAATTAAACACGATGGAATCAACACTCGTATCAATTGATCA
GAAATTCATCGACACATTGCAATTCGGCGTTCCAAGTCCTGACGAGCGAGCATTTGGTGTGTGCGTGTAGGAACTACTAC
CGGTGCTCGACGGAAGGGTGCAACGTGAAGAAGCGGGTGGAGCGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCACGTCAGCCCCAGCACCGTCTACTACGCCAGCCAGGACGCCGCCTCCGGCCGCTTCTTCGTCG
CCGGCACGCACCCGCCGCCAGGCTCACTCAACTGAGTAGACTAG-CCACCAACAACGGGGCACGTCGAGATCAGCACGGG
GCTTCTATCTCGGCCAAAAGCTGGCCAGCAAGGTGCAGGTGCAGCCACTAGTTCGTAGCTAGACTAGTGTACCACTGGTG
GATCATCAGGTTCAGTTTCTCGAGGCGTGGGGCTTTTTTTTTGGATCGATCTGTCCATATAGATCGACCTTTTCTTCTCT
CCCCGTCTTGTACTAGTGTCGTGTACAGCAGTGTGCAGTGTGGGCTCGATCACGAGAGCCCTCCCGACGAATGTAACGCA
CACTCCACTACACTACTAGTGCTACCTACTCAACCGTGCAATAAA-----------------------------------
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-------------------
>chr1B_1_TraesCS1B01G374900
CAGGGGTTTGGGTGGGTTGGGGCTGGCAGATTCCTACGTGTCTACTGTCCGGACTCCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCGGATTGCTCAGCGGACCGTTACAGACCCGCGCTGGATGGCTTTGTGGTCTAGACTGTG
CAGTCCGAACGATCGCGGGCGGTTTGAGTGTCCGCTTTAGAGATGCCTAATGAAACTAATTTGGTGTTGTAGATATCAAT
ATA-TTTTTCTATAAACTTCCACGAAACTTTGTACAATAAAAATATACTTACTTTGTATAAACATGTAGATATTGGTCGT
TGTGGGCCGATTTAGAATGTGTGGGCTTTCCACATCAAGTAAAGCTGGTCCAGAAAAGAGATTTTGAGCACAACGCA---
--AAGAATGCGGC-TTGATTGCTTGAATTGAGTCGGATCGGAGGGACCACACACACTCCTACGTGGCCAAAGAAGACCTT
TCTGCAAGTCTTTGTTCCGGAGACAATTCTCCCACCCTGCC---------------------ATAAGTGGCACGCGCGCG
CTCGCACGAGC----CTGC-GGCGGCGGGCGGGCAACCCACTCACCATCGCCGAACCTTCTCAGCACGAAGCTCACCGGG
AAGCCGCCCAAAATCCCCAAGAGCTCACGACCAGCGCCT---------C--CTCCTAGTACAAATCTACCCGCGAAATCC
ACTCCCCAACCCAATCCATGCAGCAGCAGCAGCGCACCGGCGGT---TTAGGGGGTCTTATAAATACGAAGCGCTCTCGC
CGGTGTCAAACTCGGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTACCAACAGCAGGCGCAGGCGGTGGGCGACGGC
TGCTACTTCTCTTCCATGTCCTCCCAATTCTCCCACGGGGGAATCAGCTCCACCTCCTCCAGCCCGGCCTCCAGCTTCTC
CGCCGCGCTCAGCGCCACG------------CCGGCGATCGCCGCCGACCCCGAGGCGCAGTTCGACATCTCCGAGTACC
TCTTCGAAGAGGGCGCGTTCTCCGCGTCGCTCACGCCCGTCGTCCCCGTGCCGGCCGTTGCCGCGGCTGGTGCGAGTTCG
GCGACCGCGGTGACTGCGAGGAGCGCTGCCGAGT---------CGGCGGCGGCGGCGGAGCGGCCGCGGACGGAGCGCAT
CGCGTTCCGGACGAGGTCGGAGATCGAGATCCTCGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGTCCGTCAAGA
ACAGCCCAAACCCAAGGTTGGTACCTATCCCCAACCGCAAAATTAAACACGATGGAATCAACACTCGTATCAATTGATCA
GAAATTCATCGACACATTGCAATTCGGCGTTCCAAGTCCTGACGAGCGAGCATTTGGTGTGTGCGTGTAGGAACTACTAC
CGGTGCTCGACGGAAGGGTGCAACGTGAAGAAGCGGGTGGAGCGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCACGTCAGCCCCAGCACCGTCTACTACGCCAGCCAGGACGCCGCCTCCGGCCGCTTCTTCGTCG
CCGGCACGCACCCGCCGCCAGGCTCACTCAACTGAGTAGACTAG-CCACCAACAACGGGGCACGTCGAGATCAGCACGGG
GCTTCTATCTCGGCCAAAAGCTGGCCAGCAAGGTGCAGGTGCAGCCACTAGTTCGTAGCTAGACTAGTGTACCACTGGTG
GATCATCAGGTTCAGTTTCTCGAGGCGTGGGGCTTTTTTTTTGGATCGATCTGTCCATATAGATCGACCTTTTCTTCTCT
CCCCGTCTTGTACTAGTGTCGTGTACAGCAGTGTGCAGTGTGGGCTCGATCACGAGAGCCCTCCCGACGAATGTAACGCA
CACTCCACTACACTACTAGTGCTACCTACTCAACCGTGCAATAAATATGTACAGAACCATCCGCCTCGAAGAGATCCATC
TCTGAGTC--------TCACGGTTGTACGTGCACAATTTCGACAATTTTTTAGAAGAACATGAAGGCCTCTCCCCGGTTT
CATTAACCAGAATGAAACCATAAAGAGTCTTAAACCACTACAAAGGTAGAGTTCATGGTCCAAATTTAAAACAGATTCAG
CAGCCCTGCTCGACAAGAGCCAAAAGGGCAAAAACTTAAAAACACAATGAAGGTAAAACATTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTGGTGGTCCCAGGGCCGCCTGGGGCGACCATCAGATAGCGAGGGTAGA
CACGGGGCTGTTCACCATGGTTTCGCCATCAGTGTCACGCTTCTTGGCAGGAGAAAAGAAGCCGCCGTCTTCAGAGATCT
TGAGGTTGTCCCAGCATACAC--CAGCATCCAATCCAGGGTTATTTGCTTTCAGCCACATGAGATCATCAAGGGTTGCTG
AAGCCGCTTCGCCAGAGCACTCAAGAACTCTTTCACTCGGTCTTTGCTTGTTTCT-GGGATCAGATTCACCCAGAACTTG
AGCATCCTGTGTATCAGCCTCCACACCTGATTAATAGACGTCCAAATGGTGTTATTGAAAATCATAGAGTTCCTATATTT
TCATAAACACCAAAGGACAGCAGAACTAACTACGTTTAAAGCTAAATTCTTTTTATTAGAGATCCAAAATCTGGCCACAG
ACTCAAAGTTTGTACCCCAAG-TTCTTTTGGAAAAAGAGATTGACAAACGATCAAATATTCTTGGCTACTACACAGTC--
AAAAAATAAATGGTGGTTT
>chr1D_447
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----------------------------------------------CTAATGAAACTAATTTGGTGTTGTATATGTTAAT
GCATTTTTCCTATAAACTTG-ACCATAGTTTATAAAATATGAAAACATAAACTTTGTATAAGCCTGTAGATATTGGTTGT
TGTGGACCGATTTAGAATATGTGGGCTTTCCACATCAAGTAAAGCTGGTTCAGAAAAGAGATTTTGAGCACAACGCAAAG
G-AAGAATGCGGC-TTGATTGCTTGAATTGAGTCCGACCGGAGGGGCCACACACACTCCTACGTGGCCGAGGAAGACCTT
TCTTCAAGTCTTTGTTCCGGCGACAATTCTCCCTCCCACCCCACCCCACTCTGCCATAAGTGATAAGTGGCACGAG----
-------GAGCCTGTCTGC-GGCGGCGGGCGGGAAACCCACTCACCATCGCCGAACCTTCTCAGCACGAAGCTCACCGGG
AAGCCGCCCAAAATCCCCAGGAGCTCACGGCCAGCGCCT---------CTCCTCGGAGTACAAATCCACCCGCCAAATTC
ACTCCCCAACTCAATCCAT---GCAGCAGCAGCGCACCGGCGGT---TTAGGGGGTCTTATAAATACGAAGCGCTCTCGC
CGGTGTCAAACTCGGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTACCAACAGCAGGCGCAGGCGGTGGGCGACGGC
TGCTACTTCTCTTCCATGTCCTCCCACTTCTCCCACGGGGGGATCAGCTCCACCTCCTCCAGCCCGGCCTCCAGCTTCTC
CGCCGCGCTCGGCGCCACCCCGCCCGCTGCACCGGCGATCGCCGCCGACATCACGGCGCAGTTTGACATCTCCGAGTACC
TCTTCGAGGAGGGCGCGTTCGCCGCGACGCTCCCGCCCGTCGTCTCCGTGCCGGCCGTTGGCGCGGCTGCTGCAAGTTCG
GCGACCGCGGTGACTGCGAGGAGCGC---CGAGT---------CGGCGGCGGCGGCAGAGCGGCCGCGGACGGAGCGCAT
CGCGTTCCGGACGAGGACGGAGATCGAGATCCTCGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGTCCGTCAAGA
ACAGCCCAAACCCAAGG---------------------------------------------------------------
-----------------------------------------------------------------------AACTACTAC
CGGTGCTCCACGGAGGGGTGCAGCGTGAAGAAGCGGGTGGAGCGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCACGTCAGCCCCAGCACCGTCTACTACGCCAGCCAGGACGCCGCCTCCGGCCGCTTCTTCGTCG
CCGGCACGCACCCGCCGCCAGGCTCACTCAACTGAGTAACCTAG-CCACCAACGACGGAGCACGTCGAGATCAGCACGGG
GCTTCTATCTTGGCCAA--GCTAGCCAGCCAGGTGCAGGTGTAGCCA-----------CTAGACTAGTGTACCACTGGTG
GATCATCAGGTTCAGTTTCTCGAGGCGTGGGGCTTTTTTTG-GGATCGATCTGTCCATATAGCTCGACCTTTTCTTCTCC
CCCCGTCTTGCAGTAGTGTTGTGTACATCAGTGTGCAGTGTGGGCTCGATCACGAGAGCTCTCCCGACGAATGTAACACA
CACTCCACTACACTACTAGTGCTACCTACTCAACCGTGCAATAAATATGTACAGAACCATCCGCCTCGAAGAGATCCATC
TCTGAATC------------------------------------------------------------------------
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>chr1A_545
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-----------------------------------------------------------------GTAGACATTTGTCGG
CGTGGACCGGTTTAGAATGTGTTGGCTTTCCACATCAGGTAAAGCTGGTCCAGAAAAGAGATTTTGAGCACAACGCAAAG
G-AAGAATGCGGC-TTGATTGCTTGAATTGAGTCCGATCGGAGGGGCCACACACACTCCTACGTGGCCAAGGAAGACCTT
TCTTCAAGTCTTTGTTCCG-AGACAATTCT---------CCCAGCCCACCCTGCCATAAGTGATAAGTGGCACGAG----
-------GAGCCTGTCTGC-GGCGGCGGGCGGGCAACCCACTCACCATCGCCGAACCTTCTCAGCACGAAGCTCACCGGG
AAGCCGCCCGAAATCCCCAGGAGCTCACGGCCAGCGCCT---------CTCCTCCTAGTA-------------CAAATCC
ACCCCCCAACCCAATCCATGCAGCAGCAGCAGCGCACCGGCGGT---TTAGGGGGTCTTATAAATACGAAGCGCTCTCGC
CGGTGTCAAACTCGGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTACCAACAGCAGGCGCAGGCGGCGGGCGACGGC
TGCTACTTCTCTTCCATGTCCTCCCACTTCTCCCACGGGGGGATCAGCTCAACCTCCTCCAGCCCGGCCTCCAGCTTCTC
CGCGGCGCTCGGCGCCACGCCGCCCGCTGCACCGGCGATCGCGGCGGACCCCGCGGCGCAGTTCGACATCTCCGAGTACC
TTTACGACGAGGGCACGTTCGCCGCGCCGCTCCCGCCCGTCGTCTCCGTGCCGGCCGTTGGCGCGGCTGCTGCAAGTTCG
GCGTCCGCGGTGACTGCGAGGAGCGC---CGAGT---------CGGCGG---------AGCGGCCGCGGACGGAGCGCAT
CGCGTTCCGGACTCGGTCGGAGGTCGAGATCCTGGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGGCCGTCAAGA
ACAGCCCCAACCCAAGG---------------------------------------------------------------
-----------------------------------------------------------------------AACTACTAC
CGGTGCTCGACGGAAGGGTGCAGCGTGAAGAAGCGGGTGGAGCGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCACGTGAGCCCCAGCACCGTCTACTACGCCAGCCAGGACGCCGCCTCCGGCCGCTTCTTCGTCG
CCGGCACGCACCCGCCGCCAGGCTCACTCAACTGAGTAGCACCCACCGCCAACGACGGGGCACGTCGAGATCGGCACGGG
GCTTCCATCTTGGTCAA--GCTAGACAGCTAGGTGCAGGTGCAGCCACTAGTTCGTAGCTAGACTAGTG-----------
GATCATCAGGTTCGGTTTCTCGAGGCGTGGGGCTTTTTTTG-GGATCGATCTATCCATATAGCTCGACCTTTTCTTCTCT
CCCCGTCTTGTACCAGTGTTGTGGACATCAGTGTGCAGTGTGGGCTCGATCACGAGAGCCCTCCCGACGAATGTAAGACA
CACTCCACTACACTGCTAGTGCTACCTACTTAACCGTGCAATAAATATGTACAGAACCATCCGCCTCGGAGAGATCCATC
TCTGAATCAAACGCCATCACGGTTGTACGTGCGCAATTTCAACAAT----------------------------------
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>chr1B_559
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-------------------------------------------------------------------------------T
TATGGACGGATTTGGATTGTGCTGGCTTTCCACATCAAGTAAAGCTGGTCCCGAAAA-ATGTTTTGAGCACAACGCAAAC
GAAAGAATGCGGC-TTGATTGTTTGAATTGAGTCGAATCGGATGGACCACACACACTCCTACATGGCCAAGGAAGAA-TT
TCTTCATGTCTTTGTTCCGGAGACAATTCTCCCACCC---------CACCCTGCCATAAGTGATAAGTGGCACGAG----
-------GAGCCTGTCTTCGGGCGGCGGGCGGGCAACCCACCCACCATCGCCGAACCTTCTCAGCAGGAAGCTCACCGGG
AAGCCGACCAAAATCCTCAAGAGCTCACGGCCAGCGGCCCAGCGCCTCCTCCTACCACTACAAATCTACCCGCCAAATCC
ACTCCCCAACCCAGTCCATGCAGCAGCTG---AGCAGCGGCGATTTATTAGGGGGCCTTATAAATACGAAGCGCTCTCGC
CGGTGCCAAACTCGGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTACCAGCAGCAGGCGCAGGCGGCGGGGGACGGC
TGCTACTTCTCTTTCATGTCCGCCTACTTCTCTAACGGGGAAGCCAGCTCGAACGCCTCCAGCCCAGCGTCCAGCTTCTC
GGCCGCGCTCGGCGCCACACCGCCCGCTGCACCGGTGATCGCCGCCGACCCCGCGGCACAGTTCGACATCTCCGAGTACC
TCTTCGACGAGGGCGCGTTCTCTGCAGCGCTCCCGCCCGTCGTCTCCGTGCCGGCCGTTGACGCGGCTGCTGCAAGTTCG
GCGACCGCGGTGACTGCGAGGAGCGC---CGAGTCGGCGGCGGCGGCGG---------AGCGCCCGCGGACGGAGCGCAT
CGCGTTCCGGACGAGGTCGGAGGTCGAGATCCTCGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGTCCGTCAAGA
ACAGCCCAAACCCAAGG---------------------------------------------------------------
-----------------------------------------------------------------------AACTACTAC
CGGTGCTCGACGGAAGGGTGCAACGTGAAGAAGCGGGTGGAACGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCATGTGAGCCCCAGCACCATCTACTACGCCAGCCAGGACGCCACCTCCGGCCGCTTCTTCATCG
CCGGCACGCACCCGCCGCCAGGCTCACT----------------------------------------------------
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>chr1A_612
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----------------------------------------------------GAAAA-AGGTTTTGAGCCCAACGCAAAC
GAAAGAATGCGGCTTTGATTGCTTGAATCGAGTCCGATCGGATGGACCACACACACTGCTACGTTGCCAAGGAAGACCTT
TCTTCAAGTCTTTGTTCC---------------------------------------------TAAGTGGCACGCGCGCG
CGCGCACGAGCTTGTCTGC-GGCGGCGGGCGGGCAACCCACTCACCATCGCCGAACCTTCTCAGCACGAAGCTCACCGGG
AAGCCGCCCAAAATCCCCAAGAGCTCACGGCCAGCGCCT---------CTCCTCCTAGTACAAATCCACCCGCCAAATCC
ACTCCCCAACCCAATCCATGCAGCAGCAG---AGCAGCGGCGAT---TTAGGGGGTCTTATAAATACGAAGCGCTCTCGC
CGGTGCCAAACACAGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTTCCAACAGCAGGCGCAGGCGGTGGGCGACGGC
TGCTACTTCTCTTTCATGTCCTCCTACTTCTCCCACGGGGAAGTCAGCTCGAACGCCTCCAGCCCGGCGTCCAGCTTCTC
CGCCGCGCTCGGCGCCACGCCGCCCGCTGCACCGGCGATCGCCGCCGACCCTGCGGAGCAGTTCGACATCTCCGAGTACC
TCTTCGACGAGGGCGTGTTCTCGGAGTCGCTCCCGCCCGTCATCTCCGTGCCAGCCGTTGGCGTGGCTGCTGCAAGTTCG
GCGTCCGCGGTGACTGCGAGGAGCGC---CGAGT---------CGGTGG---------AGCGGCCGCGGACGGAGCGCAT
CGCGTTCCGGACTCGGTCGGAGATCGAGATCCTCGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGTCCGTCAAGA
ACAGCCCCAACCCAAGA---------------------------------------------------------------
-----------------------------------------------------------------------AACTACTAC
CGGTGCTCGACGGAAGGGTGCAGCGTGAAGAAGCGGGTGGAGCGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCACGTCAGCCCCAGCACCGTCTACTACGCCAGCCAGGACGCCGCCTCCGGCCGCTTCTTCGTCG
CCGGCACGCACCCGCCGCCAGGCTCACTGAACT-----------------------------------------------
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>chr1D_648
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--------------TTGATTGCTTGAATTGAGCCA----GGAGGGACCACACACACTCCTACTTGGCCGAAGAAGACCTT
TCTTCAAGTCTTTGTTCTCGAGGCAATTCTCCCACCC---------CACCCTTGCATAAGTGATAAGTGGCACGAG----
-------GAGCCTGTCTGC-GGCGGCGGGCGGGCAATCCACTCACCATCGCCGAACCTTCTCAGCACGAAGCTCACCGGG
AAGCCGCCCAAAATCCCCAGGAGCTCACGGCCAGCGCCT---------C--CTCCTACTACAAATCTACCCGCCAAATCC
ACTCCCCAACCCAATCCATGCAGCAGCAGCTGAGCAGCGGCAAT---TTAGAGGGTCTTATAAATACGAAGCGCTCTCGC
CGGTGCCAAACTCAGTCATGGCGGCAGTCGGAGCGGCACCACTGCTCTACCAACAGCAGGCGCAGGCGGCGGGCGACGGC
TGCTACTTCTCTTTCATGTCCTCCTACTTCTCCCACGGGGAAGCCAGCTCGAACGCCTCCAGCCCGGCGTCCAGCTTCTC
CGCTGCGCTCGGCGCCACGCCGCCCGCTGCACCGGTGATCTCCGCCGACCCCGCGCCGCAGTTCGACATCTCCGAATACC
TCTTCGACGAGGGCGCGTTCGCCGCGCCGCTCCCGCCCGTCGTCTCCGTGCCGGCCGTTGGCGCGGTTGCTGCAAGTTCG
ACGACCGCGGTGACTGCGAGGAGCGC---CGAGT---------CGGCGG---------AGCGGCCGCGGACGGAGCGCAT
CGCGTTCCGGACTCGGTCGGAGATCGAGATCCTCGACGACGGCTACAAGTGGCGCAAGTACGGCAAGAAGTCCGTCAAGA
ACAGCCCAAACCCAAGG---------------------------------------------------------------
-----------------------------------------------------------------------AACTACTAC
CGGTGCTCGACGGAAGGGTGCAGCGTGAAGAAGCGGGTGGAGCGGGACCGGGACGACCCGGCGTACGTGGTGACCACGTA
CGAGGGCACGCACAGCCACGTCAGCCCCAGCACCGTCTACTACGCCAGCCAGGACGCCGCCTCCGGCCGCTTCTTCGTCG
CCGGCACACACCCGCCGCCAGGCTCACTCAACT-----------------------------------------------
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>chr3B_2209
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---------------------------------------------TTTTTTAGAAGAACATGGAGGCCTCTCCCCGGTTC
CATTAACCAGAATGAAACCATACAGAGTCTTAAACCACTACAAAGCTAGAGTTCATGGTCCAAATTTAAAACAGATTTAG
CAGCCCTGCTCGACAAGAGCCATT-GGGCAAAAACCTAAAAACACAATGAAGGTAAAACATTTGCGCCTGACAGGAAACA
GGGGGGGTGAAATCACACCATGAACTCGCTCGCTCCCCTCCTCTT-----------------------------------
--------------------------------------------------------------------------------
-----------------------------GAGTGGTGGTGCCAGGGCCGCCTGGGGCGACCAGCAGATAGCGAGGGTTGA
CACGCGGCTGTTCACCATGGTTTTGCCATCAGTGTCACACTTCTTGGCAGGAGAAAAGAAGTCGCCGTCTTCAGAGATCT
TGAGGTTGTCCCAGCATACACACCAGCATCCAATCCAGGGTCCTTTGCTTTCAGCCACATGAGATCATCAAGGGTTGCTG
GAGCTGCTTTGCCAGAGCACTCAAGAACTCTTCCACTCGGTCTTTGCTTGTTTCT-GGGATCAAATTCGCCCAGAACTTG
AGCATCATGTGTATCAGCCTCCACACCTGATTAATAGACATCCAAATGGTGTTATTGAAAATCATAGTGTTCCTATATTT
CCATAAACACCAAAGTACAGCAGAACTAACTACGTTTAAAGCTAAATTCTTTTTAT-AGAGATCCAAAATCTGACCACAG
ACTCAAAGTTTGTACCC-AAGTTCCTTTTGGAAAAAGAGATTGACAAACGACCAAATATTCCTGGCTACTACACAGTCG-
AAAAAATAAATGGTGGTTT
>chr3B_2593
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-----------------------------GAGTGGTGGTGCCAGGGCCGCCTAGGGCGACCAGCAGATTGCGAGGGTAGA
CACGGGGTTGTTCACCATGGTCTTGCCGTCAGTGTCACTCTCCTTGGCAGGAGAAAAGAAACCGCCGTCTTCAGAGATCT
TGAGGTTGTCCCAGCTTACAC--CAACATCCAATCCAGAGTTCTTAGCCTTCAGCCACATGAGATCATCAAGGGTTGCTG
GAGTAGCTTCACCAACGCACTCAAGAACTCCTCCACTCGGCTTTTGCTTGCTTCT-GGGGTCAGAATCACCCAGAACATG
AGCATCATGTGTATCAGTCTCCACACTTGATTAATAGACGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
TCATAAACACCAAAGGACAGCAGAACTAACTACATTTAAAGCTAAATTCTTATTATTAGAGATCCAAAATCGGGCCACAG
ATTCAAAGTTTGTACCC-AAA-TTCTTTTGGAAAGAGAGATTGACAAACGACCAAATGTTCCTGGCTACTACACAGTC--
AAAAAATAAATGGTGGTTT
>chr3B_2593
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-----------------------------GAGTGGTGGCGCCAGGGCCGCCTTGGGCGACCAGCAGATTGCGAGGGTAGA
CACGGGGCTGTTCACCAGGGTCTTGCCGTCAGTATCACGCTTCTTGGCCGGAGAAAAGAAGCCGCCGTCTTCAGAGATCT
TGAGGTTGTCCCAGCATACCC--CAGCATCCAGTCCAGGGTTCTT---CTTCAGCCACATGAGATCATCAGGGGTTGCTG
AAGTAGTTTTCCCAACGCACTCAAGAATTCTTCCATGCAGGCTTTGCTTGTTTCT-GGGGTCAGAATCACCCAGAACTTG
AGCATCCTGTGTATCAGTCTCCACACCGGATTGATAGATGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
CCATAAACACCAAAGGACAGTAGAACTAACTACATTTAAAGCTAAATTCTTTTTGTTCGAGATCCAAAGCCGGGCCACAG
ATTCAAAGTTTGTACCC-AGG-TTCTTTTAGAAAAAGAGATTGACAAACGACCAAATATTTTTGGCTACAACACAGTC--
AAAAAATAAATGATGGTTT
>chr5B_2593
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-----------------------------GAGTGGTGGTGCCAGGGCCGCCTGGGGCGACCAGCAGATTGCGAGGGTAGA
CATGGGGCTGTTCACCATGGTCTTGCCATCAGTGTCATGCTTCTTGGCAGGAGAAAAGAAACCACCGTCTTCAAAGATCT
TGAGGTTGTCCCAGCATACAC--CAGCAACCAATCCAGAGTTCTTTGCCTTCAGCCACATGAGATCAGCAAGGGTTGCTG
GAGTAGCTTCGCCAGCGCACTCAAGAACTCTTCCACTTGGCTTTTGCTTGCTTCTGGGGGTCAGAATCACCCAGAACTTG
AGCATCCTGTGTATCAGTCTCCACACCTGATTAATAGACGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
CCATAAACACCAAAGGACAGCACAACTAACTACGTTTAAAGCTAAATTCTTTTTATTAGAGATCCAAAACCGGGCCACAG
ATTCAAAGTTTGTACCC-AAG-TTCTTTTGTAAAAAGAGATTGACAAACGACCAAATATTCCTGGCTACTACACAGTC--
AAAAAATAAATGGTGGTTT
>chr5B_2593
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-----------------------------GAGTGGTGGTGCCAAGGCCGCCTGGGGCGACCAGCAGATTGCGAGAGTAGA
CACGGGGCTGTTCACCATGGTCTGGTTGTCAGTGTCAGGCTTCTTGGCAGGAGAAAAGAAAC-ACCGTCTTCAGAGATCT
TGAGGTTGTCCCAGCTTACAC--CAATATCCAATCCAGAGTTCCTAGCCTTCAGCCACATGAGATCATCAAGGGTTGCTG
AAGTAGCTTCACCAACGCACTCAAGAACTCCTCCACTCGGCTTTTGCTTGCTTCT-GGGGTCAGAGTCACCCAGAACTTG
AGCATCCTGTGTATCAGTCTCCACACCTGATTAATAGACGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTAAATTT
CCATAAACACCACAGGACAGCAGAACTAACTATGTTTAAAGCTAAGTTCTTATTATTGGAGATCCAAAATCGGGCCACAG
TATCAAAGCTTGTACAC-AAA-TTCTTTTGGAAAAAGAGATTGACAAACGACCAACTATTCCTGGCTACTACATAGTC--
AAAAAATAAATGGTCGTTT
>chr6B_2593
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-----------------------------GAGTGGTGGTGCCAGGGCCGCTTGGGGCGACCAGCAGATTGCGAGGGTAGA
CACGGGGCTATTCACCATGGTCTTGCCGTCAGTGTCGCGCTTCTTGGCAAGAGAAAAGAAACCGCCGTCTTCAGAAATCT
TGAGGTTGTCCCAGCATACAC--CAGCATCCAATCCAGGGTTCCTAGCCTTCAGCCATATGAGATCATCAAGGGTTGCTG
GATTAGCTTCGCCAGCGCACTCAGGAACTCTTCCACTCGGCTTTTGCTTGCTTCT-GGGGTCAGAACCACCCAGGACTTG
AGCATCCTGTGTATCGGTCTCCACACCTGATTAATAGACGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
CCATAAACACCAAAGGACAGCCGAA-TAACTACGTTTGAAGCTAAATTCTTTTTATTAGAGATCCAAAATCGGGCCACAG
ATTCAAAGTTTGTACCC-AAG-TCCTTTTGGAAAAAGAGATTGACAAACGACCAAATATTCCTGGCTACAACACAGTC--
AAAAAATAAATGGTGGTTT
>chr6B_2593
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-----------------------------GAGTGGTGGTGCCAGGGCCGCTTGGGGCGACCAACAAATTGCGAGGGTAGA
CACAGATCTGTTCACCATGGTCTTGCCGTCAGTGTCACGCTTCTTGGCAGGAGAAGAGAAACCGCCGTCTTCAGAGATTT
TGAGGTTGTCCCAGCTTACAC--CAACATCCAATCCAGAGTTCCTAGCCTTCAGCCACATGAGATCATCCAGGGTTGCTG
GAGTAGCTTCACCAACGCACTCAAGAACTCCTCCACTCGGCTTTTGCTTGCTTCT-GGGGTCAGAGTCACCCAGAACTTG
AGCATCCTGTGTATCAGTCTCCACACCTGATTAATAGACGCTCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
TCATAAACACCATAGGACAGCAGAACTAACTACGTTTAAAGCTAAATTCTTATTATTAGAGATCCAAAATCGGGCCACAG
TTTCAAAGTTTGTGCCC-AAA-TTCTTTTGAAAAAAGAGATTGACAAACGGCCAAATATTCCTGGCTACTACACAGTC--
AAAAAATAAATGGTGGTTT
>chr6B_2593
--------------------------------------------------------------------------------
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-----------------------------GAGTTGTGGTGCCAGGGCTGCCTGGGGCGACCAACAAATTT-GAGGGTAGA
CACGGGGTTGTTCACCATGGTCTTGCCGTCAGTGTCACGCTTCTTGGCAGGAGAAAAGAAACTGCCATCTTCAGAGATCT
TGAGGTTGTCCCAGCTTACAC--CAACATCCAATCCAGAGTTCTTAGCCTTCAGCCACATGAGATCATCAAGGGTTGCTG
GAGTAGCTTTGCCAACACACTCAAGAACTCCTCCACTCGGCTTTTGCTTGCTTTT-GGCGTCAGAATCACCTAGAACTTG
AGCATCCTGTGTATCAGTCTCCACACATGATTAATAGATGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
CCATAAACACCAAAGGATAGCCGAACTAACTACATTTAAAGCTAAATTCTTATTATTAGAGATCCAAAATCAGGCCATAG
ATTCAAAGTTTGTACCC-AAA-TTCTTTTGGAAAGAGAGATTGACAAACGACCAAATATTCCTGGCTACTACACAATC--
AAAAAATAAATGGTGGTTT
>chr3B_2594
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------------------------------AGTGGTGGTGCCAGGGCCGCTTGGGGCGACCAGCAGATTGCGAGGGTAGA
CACGGGACTGTTCACCATGGTCTTGTCGTCAGTGTCGCGCTTCTTGGCAGGAGAAAAGAAACCGCCGTCTTCAGAGATCT
TGAGGTTGTCCCAACATACAT--CAGCATCCAATCCAGGGTTCCTGGCCTTCAGCCACATGAGATCATCCAGGGTTGCTG
GAGTAGCTTCGCCAATGCACTCAAGAACTCTTCCACTCAGCTTTTGCTTGCTTCT-GGGGTCAGAACCACCCAGAACTTG
AGCATCCTGTGTATCAGTCTCCACACCTGATTAATAGACGTCCAAATGGTGTTATTAAAAATCATAGAGTTCCTATATTT
CCATGAACGCCAAAGAACAACAGAACTAACTACGTTTAATGTTAAATTCTTTTTATTATAGATCCAAAATCGGGCCACAG
ATTCAAAGTTTGTACCC-AAG-TCCTTTTGGAAAAAGAGATTGACAAACGACCAAATATTCCTGGCTACAACACAGTCAA
AAAAAATAAATGGTGGTTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------S--S-S---
SS------S----------SS--S-S-S---S--S----SS--S-S-SSS-----------S-S----------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S---------------------------------SS-----------------------------------------
-S------------------------------------------------------------------------------
-----------------------------S-------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S-----------------------------------------------------
----------S------------------------------------------S--------------------------
-------S------------------------S-----------S---------------S--------S---S------
--------------------------SSS---------------------------S-----------------------
--------------------------------------------------------------------------------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------------S--------------------------
----------S------SS---S------S--------------------------------------------------
----------------------------------------SS--------------------S-----------------
-------------------S-------S-------------------------------------------------S--
--------------------------------------------------------------------------------
-----S--------------------------S-------S---------------------S----------------S
----------------------S----------------------S-------------------------------S--
----------------------SSS----------S---------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----------------------S-----------------
-----------------------S--------------------------------------------------------
------------------------------------------S-------------------------------------
----S---------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------------------------------S----------------------------
-------------------
>forward_41
---------------------GCTGGCAGATTCCTACGTGT---------------------------------------
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-------------------
>reverse_1621
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------AATTCGGCGTTCCAAGTCCT----------------------------------------
--------------------------------------------------------------------------------
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-------------------
>forward_55
-----------------------------------ACGTGTCTACTGTCCGGACT-------------------------
--------------------------------------------------------------------------------
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-------------------
>reverse_1670
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------------------------------------------------------------GGAACTACTAC
CGGTGCTCG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>forward_1640
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATTCGGCGTTCCAAGTCCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
>reverse_2744
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------CGCCATCAGTGTCACGCTTC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------
