Multiple sequence alignment - TraesCS1B01G365500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G365500 chr1B 100.000 2426 0 0 1 2426 596315540 596317965 0.000000e+00 4481.0
1 TraesCS1B01G365500 chr1B 83.715 786 81 33 638 1405 597558560 597557804 0.000000e+00 699.0
2 TraesCS1B01G365500 chr1B 98.940 283 3 0 2056 2338 615614871 615614589 7.740000e-140 507.0
3 TraesCS1B01G365500 chr1D 92.129 1550 60 26 1 1539 439510265 439511763 0.000000e+00 2130.0
4 TraesCS1B01G365500 chr1D 94.062 842 27 9 701 1539 439557081 439557902 0.000000e+00 1256.0
5 TraesCS1B01G365500 chr1D 88.390 646 32 20 1 608 439556445 439557085 0.000000e+00 737.0
6 TraesCS1B01G365500 chr1D 83.629 733 62 33 638 1351 440049749 440049056 9.460000e-179 636.0
7 TraesCS1B01G365500 chr1D 86.364 110 7 5 1528 1631 439558312 439558419 1.970000e-21 113.0
8 TraesCS1B01G365500 chr1D 89.062 64 7 0 1568 1631 439512410 439512473 2.000000e-11 80.5
9 TraesCS1B01G365500 chr1A 90.887 1218 54 26 310 1495 539280254 539279062 0.000000e+00 1581.0
10 TraesCS1B01G365500 chr1A 81.267 726 71 38 674 1351 537820944 537821652 5.940000e-146 527.0
11 TraesCS1B01G365500 chr1A 93.255 341 13 7 1617 1951 539278370 539278034 6.030000e-136 494.0
12 TraesCS1B01G365500 chr1A 85.112 403 39 10 1632 2030 24335133 24335518 2.260000e-105 392.0
13 TraesCS1B01G365500 chr1A 93.450 229 14 1 55 282 539280556 539280328 2.990000e-89 339.0
14 TraesCS1B01G365500 chr1A 92.742 124 9 0 1937 2060 539276664 539276541 1.920000e-41 180.0
15 TraesCS1B01G365500 chr6B 99.291 282 2 0 2056 2337 715211799 715212080 5.980000e-141 510.0
16 TraesCS1B01G365500 chr6B 99.288 281 2 0 2057 2337 279088092 279087812 2.150000e-140 508.0
17 TraesCS1B01G365500 chr6B 77.059 170 17 9 1677 1839 245983177 245983023 7.190000e-11 78.7
18 TraesCS1B01G365500 chr2A 98.951 286 2 1 2057 2342 692745608 692745892 5.980000e-141 510.0
19 TraesCS1B01G365500 chr2B 99.288 281 2 0 2057 2337 635083331 635083611 2.150000e-140 508.0
20 TraesCS1B01G365500 chr7B 99.286 280 2 0 2057 2336 491171365 491171086 7.740000e-140 507.0
21 TraesCS1B01G365500 chr7B 83.014 418 48 12 1630 2033 504944129 504944537 8.250000e-95 357.0
22 TraesCS1B01G365500 chr7A 98.940 283 3 0 2056 2338 30581995 30581713 7.740000e-140 507.0
23 TraesCS1B01G365500 chr7A 82.212 416 52 11 1632 2032 6323213 6322805 2.990000e-89 339.0
24 TraesCS1B01G365500 chr3B 98.936 282 3 0 2054 2335 627755417 627755698 2.780000e-139 505.0
25 TraesCS1B01G365500 chr5B 96.959 296 6 3 2038 2333 580735380 580735088 6.030000e-136 494.0
26 TraesCS1B01G365500 chr5B 82.963 405 44 13 1632 2033 299848810 299849192 2.310000e-90 342.0
27 TraesCS1B01G365500 chr3D 85.854 410 47 8 1631 2035 346092210 346091807 2.230000e-115 425.0
28 TraesCS1B01G365500 chr6D 87.533 377 31 12 1636 2006 472714640 472715006 2.880000e-114 422.0
29 TraesCS1B01G365500 chr6D 84.634 410 51 9 1631 2036 37466308 37465907 4.860000e-107 398.0
30 TraesCS1B01G365500 chr6A 84.080 402 45 15 1637 2033 594287458 594287071 1.060000e-98 370.0
31 TraesCS1B01G365500 chr4D 100.000 34 0 0 1069 1102 380295539 380295572 2.010000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G365500 chr1B 596315540 596317965 2425 False 4481.00 4481 100.000000 1 2426 1 chr1B.!!$F1 2425
1 TraesCS1B01G365500 chr1B 597557804 597558560 756 True 699.00 699 83.715000 638 1405 1 chr1B.!!$R1 767
2 TraesCS1B01G365500 chr1D 439510265 439512473 2208 False 1105.25 2130 90.595500 1 1631 2 chr1D.!!$F1 1630
3 TraesCS1B01G365500 chr1D 439556445 439558419 1974 False 702.00 1256 89.605333 1 1631 3 chr1D.!!$F2 1630
4 TraesCS1B01G365500 chr1D 440049056 440049749 693 True 636.00 636 83.629000 638 1351 1 chr1D.!!$R1 713
5 TraesCS1B01G365500 chr1A 539276541 539280556 4015 True 648.50 1581 92.583500 55 2060 4 chr1A.!!$R1 2005
6 TraesCS1B01G365500 chr1A 537820944 537821652 708 False 527.00 527 81.267000 674 1351 1 chr1A.!!$F2 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 253 0.032815 TTCATCTTGTGCCGTCGTGA 59.967 50.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2941 0.888619 TTCTGTACAGTGCTCCTCGG 59.111 55.0 21.99 0.0 0.0 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 3.865745 CACCGAGAATTTAAGCGTCAGAT 59.134 43.478 0.00 0.00 0.00 2.90
128 129 7.009265 CGAGAATTTAAGCGTCAGATAGTGAAA 59.991 37.037 0.00 0.00 36.74 2.69
134 135 9.647797 TTTAAGCGTCAGATAGTGAAAGAATTA 57.352 29.630 0.00 0.00 36.74 1.40
219 223 1.748493 TGTGTGCTTCTTGTTTCCCAC 59.252 47.619 0.00 0.00 0.00 4.61
248 253 0.032815 TTCATCTTGTGCCGTCGTGA 59.967 50.000 0.00 0.00 0.00 4.35
276 282 5.679734 ACTTGACATGTCTAAAAGTGCAG 57.320 39.130 25.55 7.28 30.17 4.41
283 289 3.689347 TGTCTAAAAGTGCAGATGCCAT 58.311 40.909 1.72 0.00 41.18 4.40
284 290 3.441222 TGTCTAAAAGTGCAGATGCCATG 59.559 43.478 1.72 0.00 41.18 3.66
286 292 4.635765 GTCTAAAAGTGCAGATGCCATGTA 59.364 41.667 1.72 0.00 41.18 2.29
287 293 4.877823 TCTAAAAGTGCAGATGCCATGTAG 59.122 41.667 1.72 0.00 41.18 2.74
366 440 1.365633 GTTGCCGATTTTGTGCCCA 59.634 52.632 0.00 0.00 0.00 5.36
490 569 4.629634 TGCCAATAACGGAATATGCGATAG 59.370 41.667 0.00 0.00 34.49 2.08
598 680 4.536316 GACGCTCCTAGTCCTCGA 57.464 61.111 0.00 0.00 32.78 4.04
751 853 5.119743 GGTTTGTTTACGTGATCTCTGTACC 59.880 44.000 0.00 0.00 0.00 3.34
879 1000 1.823470 GTCAAGCGGCATGGGCATA 60.823 57.895 5.28 0.00 43.71 3.14
880 1001 1.151221 TCAAGCGGCATGGGCATAT 59.849 52.632 5.28 0.00 43.71 1.78
881 1002 1.174078 TCAAGCGGCATGGGCATATG 61.174 55.000 5.28 0.00 43.71 1.78
882 1003 1.151221 AAGCGGCATGGGCATATGA 59.849 52.632 6.97 0.00 43.71 2.15
883 1004 0.251474 AAGCGGCATGGGCATATGAT 60.251 50.000 6.97 0.00 43.71 2.45
924 1046 1.267732 CGCTCGAATGAGAATTGCACC 60.268 52.381 0.00 0.00 45.57 5.01
925 1047 1.267732 GCTCGAATGAGAATTGCACCG 60.268 52.381 0.00 0.00 45.57 4.94
926 1048 0.726827 TCGAATGAGAATTGCACCGC 59.273 50.000 0.00 0.00 0.00 5.68
927 1049 0.447406 CGAATGAGAATTGCACCGCA 59.553 50.000 0.00 0.00 36.47 5.69
1347 1515 3.771160 GGGCCGAGTGACGATGGT 61.771 66.667 0.00 0.00 45.77 3.55
1529 1697 9.561069 TTCAAGATTCATATAGCTTTTCTACCC 57.439 33.333 0.00 0.00 0.00 3.69
1554 2510 9.025041 CCAAAAAGAAATCCCTATTAACTCTGT 57.975 33.333 0.00 0.00 0.00 3.41
1607 2757 6.983307 CAGTTCTCTGAATATCCGAATCACTT 59.017 38.462 0.00 0.00 43.76 3.16
1608 2758 6.983307 AGTTCTCTGAATATCCGAATCACTTG 59.017 38.462 0.00 0.00 0.00 3.16
1610 2760 6.743110 TCTCTGAATATCCGAATCACTTGAG 58.257 40.000 0.00 0.00 0.00 3.02
1659 2809 1.614996 TTTGTGCATCCACGGACATT 58.385 45.000 0.00 0.00 45.04 2.71
1660 2810 0.880441 TTGTGCATCCACGGACATTG 59.120 50.000 0.00 0.00 45.04 2.82
1661 2811 1.137404 GTGCATCCACGGACATTGC 59.863 57.895 3.64 3.64 31.34 3.56
1662 2812 1.303155 TGCATCCACGGACATTGCA 60.303 52.632 8.43 8.43 40.73 4.08
1684 2834 3.334891 CCCCCGGTTCACCCATGA 61.335 66.667 0.00 0.00 0.00 3.07
1685 2835 2.689691 CCCCCGGTTCACCCATGAT 61.690 63.158 0.00 0.00 33.85 2.45
1686 2836 1.349542 CCCCCGGTTCACCCATGATA 61.350 60.000 0.00 0.00 33.85 2.15
1743 2898 6.515272 AACTTTGTGGATGTGATTATGACC 57.485 37.500 0.00 0.00 0.00 4.02
1765 2921 7.061566 ACCAAATGTTTAGGTGCTTGTAAAT 57.938 32.000 0.00 0.00 33.57 1.40
1770 2926 9.606631 AAATGTTTAGGTGCTTGTAAATTTTGA 57.393 25.926 0.00 0.00 0.00 2.69
1794 2950 1.471501 CGAAATGACATCCGAGGAGCA 60.472 52.381 0.00 0.00 0.00 4.26
1837 2993 2.361757 TGGGCTGAAAACATGTGAACAG 59.638 45.455 16.73 16.73 0.00 3.16
1869 3025 4.731961 GTGCAGAGCATCATTTGTATTTCG 59.268 41.667 0.00 0.00 41.91 3.46
1879 3035 8.320295 GCATCATTTGTATTTCGTTTTGTATGG 58.680 33.333 0.00 0.00 0.00 2.74
1918 3074 2.451490 TGGTGACCAAACTTTGCAAGA 58.549 42.857 0.00 0.00 0.00 3.02
1951 3107 6.153170 ACATTTGCTCATAATCACATCCACAA 59.847 34.615 0.00 0.00 0.00 3.33
1952 3108 6.587206 TTTGCTCATAATCACATCCACAAA 57.413 33.333 0.00 0.00 0.00 2.83
1953 3109 6.587206 TTGCTCATAATCACATCCACAAAA 57.413 33.333 0.00 0.00 0.00 2.44
1956 3112 7.613585 TGCTCATAATCACATCCACAAAATTT 58.386 30.769 0.00 0.00 0.00 1.82
2007 4547 1.133823 TGTTCACTTCATGGGTGCACT 60.134 47.619 17.98 0.00 33.38 4.40
2025 4565 3.619979 GCACTGAAGTTAGGTGTAGCCAT 60.620 47.826 8.75 0.00 40.61 4.40
2037 4577 4.286032 AGGTGTAGCCATTACTTTCACTGA 59.714 41.667 0.00 0.00 40.61 3.41
2044 4584 7.617041 AGCCATTACTTTCACTGATAAGAAC 57.383 36.000 7.54 0.00 0.00 3.01
2056 4596 4.283722 ACTGATAAGAACGAAGTCCCAAGT 59.716 41.667 0.00 0.00 45.00 3.16
2060 4600 3.679824 AGAACGAAGTCCCAAGTTAGG 57.320 47.619 0.00 0.00 45.00 2.69
2061 4601 2.074576 GAACGAAGTCCCAAGTTAGGC 58.925 52.381 0.00 0.00 45.00 3.93
2062 4602 1.349067 ACGAAGTCCCAAGTTAGGCT 58.651 50.000 0.00 0.00 29.74 4.58
2063 4603 1.002087 ACGAAGTCCCAAGTTAGGCTG 59.998 52.381 0.00 0.00 29.74 4.85
2064 4604 1.676014 CGAAGTCCCAAGTTAGGCTGG 60.676 57.143 0.00 0.00 0.00 4.85
2065 4605 1.351350 GAAGTCCCAAGTTAGGCTGGT 59.649 52.381 0.00 0.00 0.00 4.00
2066 4606 0.984995 AGTCCCAAGTTAGGCTGGTC 59.015 55.000 0.00 0.00 0.00 4.02
2067 4607 0.690762 GTCCCAAGTTAGGCTGGTCA 59.309 55.000 0.00 0.00 0.00 4.02
2068 4608 1.282157 GTCCCAAGTTAGGCTGGTCAT 59.718 52.381 0.00 0.00 0.00 3.06
2069 4609 2.504175 GTCCCAAGTTAGGCTGGTCATA 59.496 50.000 0.00 0.00 0.00 2.15
2070 4610 2.771943 TCCCAAGTTAGGCTGGTCATAG 59.228 50.000 0.00 0.00 0.00 2.23
2071 4611 2.505819 CCCAAGTTAGGCTGGTCATAGT 59.494 50.000 0.00 0.00 0.00 2.12
2072 4612 3.535561 CCAAGTTAGGCTGGTCATAGTG 58.464 50.000 0.00 0.00 0.00 2.74
2073 4613 3.535561 CAAGTTAGGCTGGTCATAGTGG 58.464 50.000 0.00 0.00 0.00 4.00
2074 4614 3.116096 AGTTAGGCTGGTCATAGTGGA 57.884 47.619 0.00 0.00 0.00 4.02
2075 4615 3.034635 AGTTAGGCTGGTCATAGTGGAG 58.965 50.000 0.00 0.00 0.00 3.86
2076 4616 3.031736 GTTAGGCTGGTCATAGTGGAGA 58.968 50.000 0.00 0.00 0.00 3.71
2077 4617 1.786937 AGGCTGGTCATAGTGGAGAG 58.213 55.000 0.00 0.00 0.00 3.20
2078 4618 1.007721 AGGCTGGTCATAGTGGAGAGT 59.992 52.381 0.00 0.00 0.00 3.24
2079 4619 2.245028 AGGCTGGTCATAGTGGAGAGTA 59.755 50.000 0.00 0.00 0.00 2.59
2080 4620 3.031736 GGCTGGTCATAGTGGAGAGTAA 58.968 50.000 0.00 0.00 0.00 2.24
2081 4621 3.181474 GGCTGGTCATAGTGGAGAGTAAC 60.181 52.174 0.00 0.00 0.00 2.50
2082 4622 3.702045 GCTGGTCATAGTGGAGAGTAACT 59.298 47.826 0.00 0.00 0.00 2.24
2083 4623 4.160626 GCTGGTCATAGTGGAGAGTAACTT 59.839 45.833 0.00 0.00 0.00 2.66
2084 4624 5.360144 GCTGGTCATAGTGGAGAGTAACTTA 59.640 44.000 0.00 0.00 0.00 2.24
2085 4625 6.460399 GCTGGTCATAGTGGAGAGTAACTTAG 60.460 46.154 0.00 0.00 0.00 2.18
2086 4626 6.728411 TGGTCATAGTGGAGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
2087 4627 6.602406 TGGTCATAGTGGAGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
2088 4628 6.829811 GGTCATAGTGGAGAGTAACTTAGACT 59.170 42.308 0.00 0.00 33.27 3.24
2089 4629 7.992033 GGTCATAGTGGAGAGTAACTTAGACTA 59.008 40.741 0.00 0.00 33.27 2.59
2090 4630 9.048446 GTCATAGTGGAGAGTAACTTAGACTAG 57.952 40.741 0.00 0.00 31.58 2.57
2091 4631 8.770322 TCATAGTGGAGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
2094 4634 8.791327 AGTGGAGAGTAACTTAGACTAGTAAC 57.209 38.462 0.00 0.00 0.00 2.50
2095 4635 8.381636 AGTGGAGAGTAACTTAGACTAGTAACA 58.618 37.037 0.00 0.00 0.00 2.41
2096 4636 9.176460 GTGGAGAGTAACTTAGACTAGTAACAT 57.824 37.037 0.00 0.00 0.00 2.71
2128 4668 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
2134 4674 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
2135 4675 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
2136 4676 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
2137 4677 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
2142 4682 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
2143 4683 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
2144 4684 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
2145 4685 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
2146 4686 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
2147 4687 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
2148 4688 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
2149 4689 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
2150 4690 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
2151 4691 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
2152 4692 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
2153 4693 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
2154 4694 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
2155 4695 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
2156 4696 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
2175 4715 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
2176 4716 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
2177 4717 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
2185 4725 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
2186 4726 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
2187 4727 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
2188 4728 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
2189 4729 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
2200 4740 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
2201 4741 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
2202 4742 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
2203 4743 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
2204 4744 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
2205 4745 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
2206 4746 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
2207 4747 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
2208 4748 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
2209 4749 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
2210 4750 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
2211 4751 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
2212 4752 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
2213 4753 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
2214 4754 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
2215 4755 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
2216 4756 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
2217 4757 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
2218 4758 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
2219 4759 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
2220 4760 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
2221 4761 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
2250 4790 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
2251 4791 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
2252 4792 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
2253 4793 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
2254 4794 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
2255 4795 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
2256 4796 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
2257 4797 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
2258 4798 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
2259 4799 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
2260 4800 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
2261 4801 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
2262 4802 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
2263 4803 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
2264 4804 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
2265 4805 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
2266 4806 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
2267 4807 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
2268 4808 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
2269 4809 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
2270 4810 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
2271 4811 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
2272 4812 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
2273 4813 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
2274 4814 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
2275 4815 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
2276 4816 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
2277 4817 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
2278 4818 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
2279 4819 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
2280 4820 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
2281 4821 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
2282 4822 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
2283 4823 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
2284 4824 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
2285 4825 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
2286 4826 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
2287 4827 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
2288 4828 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
2289 4829 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
2290 4830 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
2291 4831 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
2292 4832 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
2293 4833 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
2294 4834 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
2295 4835 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
2296 4836 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
2297 4837 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
2298 4838 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
2299 4839 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
2300 4840 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
2301 4841 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
2302 4842 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
2303 4843 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
2304 4844 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
2305 4845 6.929049 TGCTTATGTGGCATCTATGTTACTAC 59.071 38.462 0.00 0.00 34.56 2.73
2306 4846 6.369065 GCTTATGTGGCATCTATGTTACTACC 59.631 42.308 0.00 0.00 0.00 3.18
2307 4847 7.612065 TTATGTGGCATCTATGTTACTACCT 57.388 36.000 0.00 0.00 0.00 3.08
2308 4848 8.715190 TTATGTGGCATCTATGTTACTACCTA 57.285 34.615 0.00 0.00 0.00 3.08
2309 4849 7.798710 ATGTGGCATCTATGTTACTACCTAT 57.201 36.000 0.00 0.00 0.00 2.57
2310 4850 8.895141 ATGTGGCATCTATGTTACTACCTATA 57.105 34.615 0.00 0.00 0.00 1.31
2311 4851 8.895141 TGTGGCATCTATGTTACTACCTATAT 57.105 34.615 0.00 0.00 0.00 0.86
2312 4852 9.321532 TGTGGCATCTATGTTACTACCTATATT 57.678 33.333 0.00 0.00 0.00 1.28
2327 4867 8.114743 ACTACCTATATTACTCCCACTATGACC 58.885 40.741 0.00 0.00 0.00 4.02
2328 4868 6.871035 ACCTATATTACTCCCACTATGACCA 58.129 40.000 0.00 0.00 0.00 4.02
2329 4869 6.954684 ACCTATATTACTCCCACTATGACCAG 59.045 42.308 0.00 0.00 0.00 4.00
2330 4870 5.746990 ATATTACTCCCACTATGACCAGC 57.253 43.478 0.00 0.00 0.00 4.85
2331 4871 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
2332 4872 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
2333 4873 1.207791 CTCCCACTATGACCAGCCTT 58.792 55.000 0.00 0.00 0.00 4.35
2334 4874 2.292918 ACTCCCACTATGACCAGCCTTA 60.293 50.000 0.00 0.00 0.00 2.69
2335 4875 2.975489 CTCCCACTATGACCAGCCTTAT 59.025 50.000 0.00 0.00 0.00 1.73
2336 4876 4.160329 CTCCCACTATGACCAGCCTTATA 58.840 47.826 0.00 0.00 0.00 0.98
2337 4877 4.160329 TCCCACTATGACCAGCCTTATAG 58.840 47.826 0.00 0.00 0.00 1.31
2338 4878 3.261897 CCCACTATGACCAGCCTTATAGG 59.738 52.174 0.00 0.00 38.80 2.57
2339 4879 3.904339 CCACTATGACCAGCCTTATAGGT 59.096 47.826 0.00 0.00 37.80 3.08
2340 4880 4.348168 CCACTATGACCAGCCTTATAGGTT 59.652 45.833 0.00 0.00 37.80 3.50
2341 4881 5.300752 CACTATGACCAGCCTTATAGGTTG 58.699 45.833 2.89 2.89 45.01 3.77
2350 4890 3.877508 AGCCTTATAGGTTGAAATGTCGC 59.122 43.478 0.00 0.00 37.80 5.19
2351 4891 3.625764 GCCTTATAGGTTGAAATGTCGCA 59.374 43.478 0.00 0.00 37.80 5.10
2352 4892 4.260784 GCCTTATAGGTTGAAATGTCGCAG 60.261 45.833 0.00 0.00 37.80 5.18
2353 4893 4.260784 CCTTATAGGTTGAAATGTCGCAGC 60.261 45.833 0.00 0.00 0.00 5.25
2354 4894 1.075542 TAGGTTGAAATGTCGCAGCG 58.924 50.000 9.06 9.06 0.00 5.18
2355 4895 0.884704 AGGTTGAAATGTCGCAGCGT 60.885 50.000 15.93 0.00 0.00 5.07
2356 4896 0.452784 GGTTGAAATGTCGCAGCGTC 60.453 55.000 15.93 10.27 0.00 5.19
2357 4897 0.452784 GTTGAAATGTCGCAGCGTCC 60.453 55.000 15.93 7.49 0.00 4.79
2358 4898 0.602638 TTGAAATGTCGCAGCGTCCT 60.603 50.000 15.93 0.00 0.00 3.85
2359 4899 1.014044 TGAAATGTCGCAGCGTCCTC 61.014 55.000 15.93 6.80 0.00 3.71
2360 4900 2.014093 GAAATGTCGCAGCGTCCTCG 62.014 60.000 15.93 0.00 40.37 4.63
2361 4901 3.989698 AATGTCGCAGCGTCCTCGG 62.990 63.158 15.93 0.00 37.56 4.63
2363 4903 3.807538 GTCGCAGCGTCCTCGGTA 61.808 66.667 15.93 0.00 46.12 4.02
2364 4904 2.827190 TCGCAGCGTCCTCGGTAT 60.827 61.111 15.93 0.00 46.12 2.73
2365 4905 2.655364 CGCAGCGTCCTCGGTATG 60.655 66.667 6.65 0.00 46.12 2.39
2366 4906 2.279517 GCAGCGTCCTCGGTATGG 60.280 66.667 0.00 0.00 46.12 2.74
2367 4907 2.417516 CAGCGTCCTCGGTATGGG 59.582 66.667 0.00 0.00 46.12 4.00
2368 4908 2.043248 AGCGTCCTCGGTATGGGT 60.043 61.111 0.00 0.00 46.01 4.51
2369 4909 2.106332 GCGTCCTCGGTATGGGTG 59.894 66.667 0.00 0.00 37.56 4.61
2370 4910 2.420568 GCGTCCTCGGTATGGGTGA 61.421 63.158 0.00 0.00 37.56 4.02
2371 4911 1.952102 GCGTCCTCGGTATGGGTGAA 61.952 60.000 0.00 0.00 37.56 3.18
2372 4912 0.533491 CGTCCTCGGTATGGGTGAAA 59.467 55.000 0.00 0.00 0.00 2.69
2373 4913 1.066716 CGTCCTCGGTATGGGTGAAAA 60.067 52.381 0.00 0.00 0.00 2.29
2374 4914 2.613474 CGTCCTCGGTATGGGTGAAAAA 60.613 50.000 0.00 0.00 0.00 1.94
2375 4915 3.617284 GTCCTCGGTATGGGTGAAAAAT 58.383 45.455 0.00 0.00 0.00 1.82
2376 4916 3.377172 GTCCTCGGTATGGGTGAAAAATG 59.623 47.826 0.00 0.00 0.00 2.32
2377 4917 3.264706 TCCTCGGTATGGGTGAAAAATGA 59.735 43.478 0.00 0.00 0.00 2.57
2378 4918 4.013728 CCTCGGTATGGGTGAAAAATGAA 58.986 43.478 0.00 0.00 0.00 2.57
2379 4919 4.096382 CCTCGGTATGGGTGAAAAATGAAG 59.904 45.833 0.00 0.00 0.00 3.02
2380 4920 4.912586 TCGGTATGGGTGAAAAATGAAGA 58.087 39.130 0.00 0.00 0.00 2.87
2381 4921 4.698304 TCGGTATGGGTGAAAAATGAAGAC 59.302 41.667 0.00 0.00 0.00 3.01
2382 4922 4.142469 CGGTATGGGTGAAAAATGAAGACC 60.142 45.833 0.00 0.00 0.00 3.85
2383 4923 4.142469 GGTATGGGTGAAAAATGAAGACCG 60.142 45.833 0.00 0.00 0.00 4.79
2384 4924 2.235016 TGGGTGAAAAATGAAGACCGG 58.765 47.619 0.00 0.00 0.00 5.28
2385 4925 2.158593 TGGGTGAAAAATGAAGACCGGA 60.159 45.455 9.46 0.00 0.00 5.14
2386 4926 2.888414 GGGTGAAAAATGAAGACCGGAA 59.112 45.455 9.46 0.00 0.00 4.30
2387 4927 3.057526 GGGTGAAAAATGAAGACCGGAAG 60.058 47.826 9.46 0.00 0.00 3.46
2388 4928 3.818773 GGTGAAAAATGAAGACCGGAAGA 59.181 43.478 9.46 0.00 0.00 2.87
2389 4929 4.459337 GGTGAAAAATGAAGACCGGAAGAT 59.541 41.667 9.46 0.00 0.00 2.40
2390 4930 5.393962 GTGAAAAATGAAGACCGGAAGATG 58.606 41.667 9.46 0.00 0.00 2.90
2391 4931 5.181245 GTGAAAAATGAAGACCGGAAGATGA 59.819 40.000 9.46 0.00 0.00 2.92
2392 4932 5.767665 TGAAAAATGAAGACCGGAAGATGAA 59.232 36.000 9.46 0.00 0.00 2.57
2393 4933 5.886960 AAAATGAAGACCGGAAGATGAAG 57.113 39.130 9.46 0.00 0.00 3.02
2394 4934 3.550437 ATGAAGACCGGAAGATGAAGG 57.450 47.619 9.46 0.00 0.00 3.46
2395 4935 2.257207 TGAAGACCGGAAGATGAAGGT 58.743 47.619 9.46 0.00 40.11 3.50
2397 4937 3.347411 GACCGGAAGATGAAGGTCG 57.653 57.895 9.46 0.00 42.88 4.79
2398 4938 0.531200 GACCGGAAGATGAAGGTCGT 59.469 55.000 9.46 0.00 42.88 4.34
2399 4939 0.974383 ACCGGAAGATGAAGGTCGTT 59.026 50.000 9.46 0.00 29.76 3.85
2400 4940 1.337823 ACCGGAAGATGAAGGTCGTTG 60.338 52.381 9.46 0.00 29.76 4.10
2401 4941 1.359848 CGGAAGATGAAGGTCGTTGG 58.640 55.000 0.00 0.00 0.00 3.77
2402 4942 1.337823 CGGAAGATGAAGGTCGTTGGT 60.338 52.381 0.00 0.00 0.00 3.67
2403 4943 2.076863 GGAAGATGAAGGTCGTTGGTG 58.923 52.381 0.00 0.00 0.00 4.17
2404 4944 2.550208 GGAAGATGAAGGTCGTTGGTGT 60.550 50.000 0.00 0.00 0.00 4.16
2405 4945 2.457366 AGATGAAGGTCGTTGGTGTC 57.543 50.000 0.00 0.00 0.00 3.67
2406 4946 1.002087 AGATGAAGGTCGTTGGTGTCC 59.998 52.381 0.00 0.00 0.00 4.02
2407 4947 0.320421 ATGAAGGTCGTTGGTGTCCG 60.320 55.000 0.00 0.00 0.00 4.79
2408 4948 2.280592 AAGGTCGTTGGTGTCCGC 60.281 61.111 0.00 0.00 0.00 5.54
2409 4949 4.657824 AGGTCGTTGGTGTCCGCG 62.658 66.667 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.217983 CACACTCCTCCGTTACTCTAGTTT 59.782 45.833 0.00 0.00 0.00 2.66
30 31 2.100197 CCTCATCACACTCCTCCGTTA 58.900 52.381 0.00 0.00 0.00 3.18
128 129 7.422399 ACACGCTAAACAACAACATTAATTCT 58.578 30.769 0.00 0.00 0.00 2.40
134 135 4.893424 AGACACGCTAAACAACAACATT 57.107 36.364 0.00 0.00 0.00 2.71
219 223 3.488047 GGCACAAGATGAAACGATGGATG 60.488 47.826 0.00 0.00 0.00 3.51
248 253 7.679638 GCACTTTTAGACATGTCAAGTTTGAGT 60.680 37.037 27.02 16.55 37.98 3.41
283 289 7.173907 GCACCGGTAGATTAATAGTACTCTACA 59.826 40.741 21.75 0.00 41.19 2.74
284 290 7.173907 TGCACCGGTAGATTAATAGTACTCTAC 59.826 40.741 6.87 15.53 39.81 2.59
286 292 6.016443 GTGCACCGGTAGATTAATAGTACTCT 60.016 42.308 6.87 0.00 0.00 3.24
287 293 6.148264 GTGCACCGGTAGATTAATAGTACTC 58.852 44.000 6.87 0.00 0.00 2.59
329 398 1.077787 ACACCACACCACACCACAG 60.078 57.895 0.00 0.00 0.00 3.66
330 399 1.377856 CACACCACACCACACCACA 60.378 57.895 0.00 0.00 0.00 4.17
331 400 0.963355 AACACACCACACCACACCAC 60.963 55.000 0.00 0.00 0.00 4.16
332 401 0.962855 CAACACACCACACCACACCA 60.963 55.000 0.00 0.00 0.00 4.17
333 402 1.806568 CAACACACCACACCACACC 59.193 57.895 0.00 0.00 0.00 4.16
366 440 4.163078 GCCATAGTAGATAGGCATGTGGAT 59.837 45.833 0.00 0.00 46.26 3.41
598 680 0.811616 GTCAAAGAGGGCGATCGCAT 60.812 55.000 38.00 27.16 44.11 4.73
838 954 2.665185 GAACAAGGGAGCGCGTGT 60.665 61.111 8.43 0.00 0.00 4.49
879 1000 3.055094 GCCATGGACGGACCTTATATCAT 60.055 47.826 18.40 0.00 39.86 2.45
880 1001 2.301870 GCCATGGACGGACCTTATATCA 59.698 50.000 18.40 0.00 39.86 2.15
881 1002 2.354805 GGCCATGGACGGACCTTATATC 60.355 54.545 18.40 0.00 39.86 1.63
882 1003 1.628846 GGCCATGGACGGACCTTATAT 59.371 52.381 18.40 0.00 39.86 0.86
883 1004 1.053424 GGCCATGGACGGACCTTATA 58.947 55.000 18.40 0.00 39.86 0.98
924 1046 0.433492 CTCTAACAAACGGACGTGCG 59.567 55.000 28.33 28.33 0.00 5.34
925 1047 0.163146 GCTCTAACAAACGGACGTGC 59.837 55.000 0.00 0.00 0.00 5.34
926 1048 1.779569 AGCTCTAACAAACGGACGTG 58.220 50.000 0.00 0.00 0.00 4.49
927 1049 2.521105 AAGCTCTAACAAACGGACGT 57.479 45.000 0.00 0.00 0.00 4.34
969 1134 4.717629 TTCAGTCGCCTCGCCGTG 62.718 66.667 0.00 0.00 0.00 4.94
1282 1450 1.002087 GAAGACGTTGGTGTCCCTGAT 59.998 52.381 0.00 0.00 39.77 2.90
1347 1515 2.350895 CCGTCCCCAGCATTGACA 59.649 61.111 0.00 0.00 0.00 3.58
1560 2516 5.060506 TGAGGAATAGCGAGTTCAAAACAA 58.939 37.500 0.00 0.00 0.00 2.83
1561 2517 4.637276 TGAGGAATAGCGAGTTCAAAACA 58.363 39.130 0.00 0.00 0.00 2.83
1562 2518 4.691216 ACTGAGGAATAGCGAGTTCAAAAC 59.309 41.667 0.00 0.00 0.00 2.43
1563 2519 4.894784 ACTGAGGAATAGCGAGTTCAAAA 58.105 39.130 0.00 0.00 0.00 2.44
1607 2757 3.821033 TCTTCTCACACAGAATCGACTCA 59.179 43.478 0.00 0.00 40.55 3.41
1608 2758 4.427096 TCTTCTCACACAGAATCGACTC 57.573 45.455 0.00 0.00 40.55 3.36
1610 2760 4.799678 TCTTCTTCTCACACAGAATCGAC 58.200 43.478 0.00 0.00 40.55 4.20
1617 2767 3.181471 ACCACACTCTTCTTCTCACACAG 60.181 47.826 0.00 0.00 0.00 3.66
1661 2811 3.061848 GTGAACCGGGGGTGCATG 61.062 66.667 6.32 0.00 44.00 4.06
1662 2812 4.360405 GGTGAACCGGGGGTGCAT 62.360 66.667 6.32 0.00 44.00 3.96
1717 2872 7.309133 GGTCATAATCACATCCACAAAGTTTCA 60.309 37.037 0.00 0.00 0.00 2.69
1743 2898 9.649024 CAAAATTTACAAGCACCTAAACATTTG 57.351 29.630 0.00 0.00 0.00 2.32
1765 2921 3.427368 CGGATGTCATTTCGCCATCAAAA 60.427 43.478 0.00 0.00 37.34 2.44
1770 2926 1.586422 CTCGGATGTCATTTCGCCAT 58.414 50.000 5.09 0.00 0.00 4.40
1785 2941 0.888619 TTCTGTACAGTGCTCCTCGG 59.111 55.000 21.99 0.00 0.00 4.63
1814 2970 3.181477 TGTTCACATGTTTTCAGCCCAAG 60.181 43.478 0.00 0.00 0.00 3.61
1837 2993 1.672881 GATGCTCTGCACCCATGTTAC 59.327 52.381 0.00 0.00 43.04 2.50
1918 3074 8.970020 TGTGATTATGAGCAAATGTTTTAGGAT 58.030 29.630 0.00 0.00 0.00 3.24
2007 4547 6.368779 AAGTAATGGCTACACCTAACTTCA 57.631 37.500 0.00 0.00 40.22 3.02
2025 4565 7.597743 GGACTTCGTTCTTATCAGTGAAAGTAA 59.402 37.037 0.00 0.00 0.00 2.24
2037 4577 5.731591 CCTAACTTGGGACTTCGTTCTTAT 58.268 41.667 0.00 0.00 0.00 1.73
2044 4584 1.676014 CCAGCCTAACTTGGGACTTCG 60.676 57.143 0.00 0.00 0.00 3.79
2056 4596 3.300388 CTCTCCACTATGACCAGCCTAA 58.700 50.000 0.00 0.00 0.00 2.69
2060 4600 3.702045 AGTTACTCTCCACTATGACCAGC 59.298 47.826 0.00 0.00 0.00 4.85
2061 4601 5.923733 AAGTTACTCTCCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
2062 4602 6.602406 GTCTAAGTTACTCTCCACTATGACCA 59.398 42.308 0.00 0.00 0.00 4.02
2063 4603 6.829811 AGTCTAAGTTACTCTCCACTATGACC 59.170 42.308 0.00 0.00 31.22 4.02
2064 4604 7.868906 AGTCTAAGTTACTCTCCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
2065 4605 8.770322 ACTAGTCTAAGTTACTCTCCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
2066 4606 8.967664 ACTAGTCTAAGTTACTCTCCACTATG 57.032 38.462 0.00 0.00 0.00 2.23
2068 4608 9.883142 GTTACTAGTCTAAGTTACTCTCCACTA 57.117 37.037 0.00 0.00 0.00 2.74
2069 4609 8.381636 TGTTACTAGTCTAAGTTACTCTCCACT 58.618 37.037 0.00 0.00 31.82 4.00
2070 4610 8.558973 TGTTACTAGTCTAAGTTACTCTCCAC 57.441 38.462 0.00 0.00 31.82 4.02
2102 4642 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
2108 4648 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
2109 4649 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
2110 4650 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
2111 4651 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
2112 4652 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
2113 4653 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
2114 4654 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
2121 4661 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
2122 4662 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
2123 4663 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
2124 4664 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
2125 4665 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
2126 4666 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
2127 4667 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
2128 4668 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
2129 4669 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
2130 4670 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
2131 4671 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
2132 4672 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
2133 4673 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
2134 4674 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
2135 4675 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
2136 4676 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
2137 4677 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
2138 4678 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
2139 4679 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
2140 4680 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
2141 4681 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
2142 4682 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
2143 4683 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
2144 4684 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
2145 4685 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
2160 4700 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
2161 4701 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
2162 4702 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
2163 4703 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
2174 4714 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
2175 4715 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
2176 4716 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
2177 4717 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
2178 4718 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
2179 4719 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
2180 4720 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
2181 4721 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
2182 4722 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
2183 4723 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
2184 4724 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
2185 4725 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
2186 4726 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
2187 4727 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
2188 4728 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
2189 4729 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
2190 4730 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
2191 4731 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
2192 4732 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
2193 4733 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
2194 4734 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
2195 4735 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
2196 4736 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
2197 4737 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
2198 4738 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
2199 4739 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
2200 4740 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
2201 4741 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
2202 4742 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
2203 4743 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
2204 4744 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
2205 4745 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
2224 4764 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
2225 4765 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
2226 4766 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
2227 4767 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
2228 4768 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
2229 4769 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
2230 4770 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
2231 4771 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
2232 4772 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
2233 4773 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
2234 4774 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
2235 4775 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
2236 4776 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
2237 4777 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
2238 4778 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
2239 4779 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
2240 4780 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
2241 4781 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
2242 4782 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
2243 4783 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
2244 4784 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
2245 4785 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
2246 4786 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
2247 4787 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
2248 4788 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
2249 4789 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
2250 4790 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
2251 4791 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
2252 4792 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
2253 4793 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
2254 4794 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
2255 4795 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
2256 4796 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
2257 4797 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
2258 4798 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
2259 4799 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
2260 4800 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
2261 4801 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
2262 4802 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
2263 4803 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
2264 4804 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
2265 4805 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
2266 4806 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
2267 4807 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
2268 4808 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
2269 4809 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
2270 4810 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
2271 4811 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
2272 4812 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
2273 4813 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
2274 4814 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
2275 4815 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
2276 4816 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
2277 4817 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
2278 4818 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
2279 4819 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
2280 4820 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
2281 4821 6.369065 GGTAGTAACATAGATGCCACATAAGC 59.631 42.308 0.00 0.00 0.00 3.09
2282 4822 7.671302 AGGTAGTAACATAGATGCCACATAAG 58.329 38.462 0.00 0.00 0.00 1.73
2283 4823 7.612065 AGGTAGTAACATAGATGCCACATAA 57.388 36.000 0.00 0.00 0.00 1.90
2284 4824 8.895141 ATAGGTAGTAACATAGATGCCACATA 57.105 34.615 0.00 0.00 0.00 2.29
2285 4825 7.798710 ATAGGTAGTAACATAGATGCCACAT 57.201 36.000 0.00 0.00 0.00 3.21
2286 4826 8.895141 ATATAGGTAGTAACATAGATGCCACA 57.105 34.615 0.00 0.00 0.00 4.17
2301 4841 8.114743 GGTCATAGTGGGAGTAATATAGGTAGT 58.885 40.741 0.00 0.00 0.00 2.73
2302 4842 8.114102 TGGTCATAGTGGGAGTAATATAGGTAG 58.886 40.741 0.00 0.00 0.00 3.18
2303 4843 8.003564 TGGTCATAGTGGGAGTAATATAGGTA 57.996 38.462 0.00 0.00 0.00 3.08
2304 4844 6.871035 TGGTCATAGTGGGAGTAATATAGGT 58.129 40.000 0.00 0.00 0.00 3.08
2305 4845 6.127310 GCTGGTCATAGTGGGAGTAATATAGG 60.127 46.154 0.00 0.00 0.00 2.57
2306 4846 6.127310 GGCTGGTCATAGTGGGAGTAATATAG 60.127 46.154 0.00 0.00 0.00 1.31
2307 4847 5.720041 GGCTGGTCATAGTGGGAGTAATATA 59.280 44.000 0.00 0.00 0.00 0.86
2308 4848 4.532521 GGCTGGTCATAGTGGGAGTAATAT 59.467 45.833 0.00 0.00 0.00 1.28
2309 4849 3.901844 GGCTGGTCATAGTGGGAGTAATA 59.098 47.826 0.00 0.00 0.00 0.98
2310 4850 2.706190 GGCTGGTCATAGTGGGAGTAAT 59.294 50.000 0.00 0.00 0.00 1.89
2311 4851 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
2312 4852 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
2313 4853 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
2314 4854 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
2315 4855 2.561209 TAAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
2316 4856 3.261897 CCTATAAGGCTGGTCATAGTGGG 59.738 52.174 0.00 0.00 0.00 4.61
2317 4857 3.904339 ACCTATAAGGCTGGTCATAGTGG 59.096 47.826 0.00 0.00 39.63 4.00
2318 4858 5.070446 TCAACCTATAAGGCTGGTCATAGTG 59.930 44.000 0.00 0.00 39.63 2.74
2319 4859 5.216622 TCAACCTATAAGGCTGGTCATAGT 58.783 41.667 0.00 0.00 39.63 2.12
2320 4860 5.808366 TCAACCTATAAGGCTGGTCATAG 57.192 43.478 0.00 0.00 39.63 2.23
2321 4861 6.569127 TTTCAACCTATAAGGCTGGTCATA 57.431 37.500 0.00 0.00 39.63 2.15
2322 4862 5.450818 TTTCAACCTATAAGGCTGGTCAT 57.549 39.130 0.00 0.00 39.63 3.06
2323 4863 4.919774 TTTCAACCTATAAGGCTGGTCA 57.080 40.909 0.00 0.00 39.63 4.02
2324 4864 5.193679 ACATTTCAACCTATAAGGCTGGTC 58.806 41.667 0.00 0.00 39.63 4.02
2325 4865 5.193099 ACATTTCAACCTATAAGGCTGGT 57.807 39.130 0.00 0.00 39.63 4.00
2326 4866 4.273480 CGACATTTCAACCTATAAGGCTGG 59.727 45.833 0.00 0.00 39.63 4.85
2327 4867 4.260784 GCGACATTTCAACCTATAAGGCTG 60.261 45.833 0.00 0.00 39.63 4.85
2328 4868 3.877508 GCGACATTTCAACCTATAAGGCT 59.122 43.478 0.00 0.00 39.63 4.58
2329 4869 3.625764 TGCGACATTTCAACCTATAAGGC 59.374 43.478 0.00 0.00 39.63 4.35
2330 4870 4.260784 GCTGCGACATTTCAACCTATAAGG 60.261 45.833 0.00 0.00 42.49 2.69
2331 4871 4.550831 CGCTGCGACATTTCAACCTATAAG 60.551 45.833 18.66 0.00 0.00 1.73
2332 4872 3.308595 CGCTGCGACATTTCAACCTATAA 59.691 43.478 18.66 0.00 0.00 0.98
2333 4873 2.863740 CGCTGCGACATTTCAACCTATA 59.136 45.455 18.66 0.00 0.00 1.31
2334 4874 1.665679 CGCTGCGACATTTCAACCTAT 59.334 47.619 18.66 0.00 0.00 2.57
2335 4875 1.075542 CGCTGCGACATTTCAACCTA 58.924 50.000 18.66 0.00 0.00 3.08
2336 4876 0.884704 ACGCTGCGACATTTCAACCT 60.885 50.000 30.47 0.00 0.00 3.50
2337 4877 0.452784 GACGCTGCGACATTTCAACC 60.453 55.000 30.47 0.70 0.00 3.77
2338 4878 0.452784 GGACGCTGCGACATTTCAAC 60.453 55.000 30.47 3.96 0.00 3.18
2339 4879 0.602638 AGGACGCTGCGACATTTCAA 60.603 50.000 30.47 0.00 0.00 2.69
2340 4880 1.005037 AGGACGCTGCGACATTTCA 60.005 52.632 30.47 0.00 0.00 2.69
2341 4881 1.710339 GAGGACGCTGCGACATTTC 59.290 57.895 30.47 14.94 0.00 2.17
2342 4882 2.094659 CGAGGACGCTGCGACATTT 61.095 57.895 30.47 11.81 0.00 2.32
2343 4883 2.507102 CGAGGACGCTGCGACATT 60.507 61.111 30.47 14.42 0.00 2.71
2344 4884 4.498520 CCGAGGACGCTGCGACAT 62.499 66.667 30.47 21.12 38.29 3.06
2346 4886 3.122250 ATACCGAGGACGCTGCGAC 62.122 63.158 30.47 22.77 38.29 5.19
2347 4887 2.827190 ATACCGAGGACGCTGCGA 60.827 61.111 30.47 3.26 38.29 5.10
2348 4888 2.655364 CATACCGAGGACGCTGCG 60.655 66.667 21.91 21.91 38.29 5.18
2349 4889 2.279517 CCATACCGAGGACGCTGC 60.280 66.667 0.00 0.00 38.29 5.25
2350 4890 2.417516 CCCATACCGAGGACGCTG 59.582 66.667 0.00 0.00 38.29 5.18
2351 4891 2.043248 ACCCATACCGAGGACGCT 60.043 61.111 0.00 0.00 38.29 5.07
2352 4892 1.952102 TTCACCCATACCGAGGACGC 61.952 60.000 0.00 0.00 38.29 5.19
2353 4893 0.533491 TTTCACCCATACCGAGGACG 59.467 55.000 0.00 0.00 39.43 4.79
2354 4894 2.773993 TTTTCACCCATACCGAGGAC 57.226 50.000 0.00 0.00 0.00 3.85
2355 4895 3.264706 TCATTTTTCACCCATACCGAGGA 59.735 43.478 0.00 0.00 0.00 3.71
2356 4896 3.616219 TCATTTTTCACCCATACCGAGG 58.384 45.455 0.00 0.00 0.00 4.63
2357 4897 4.941263 TCTTCATTTTTCACCCATACCGAG 59.059 41.667 0.00 0.00 0.00 4.63
2358 4898 4.698304 GTCTTCATTTTTCACCCATACCGA 59.302 41.667 0.00 0.00 0.00 4.69
2359 4899 4.142469 GGTCTTCATTTTTCACCCATACCG 60.142 45.833 0.00 0.00 0.00 4.02
2360 4900 4.142469 CGGTCTTCATTTTTCACCCATACC 60.142 45.833 0.00 0.00 0.00 2.73
2361 4901 4.142469 CCGGTCTTCATTTTTCACCCATAC 60.142 45.833 0.00 0.00 0.00 2.39
2362 4902 4.013728 CCGGTCTTCATTTTTCACCCATA 58.986 43.478 0.00 0.00 0.00 2.74
2363 4903 2.825532 CCGGTCTTCATTTTTCACCCAT 59.174 45.455 0.00 0.00 0.00 4.00
2364 4904 2.158593 TCCGGTCTTCATTTTTCACCCA 60.159 45.455 0.00 0.00 0.00 4.51
2365 4905 2.510613 TCCGGTCTTCATTTTTCACCC 58.489 47.619 0.00 0.00 0.00 4.61
2366 4906 3.818773 TCTTCCGGTCTTCATTTTTCACC 59.181 43.478 0.00 0.00 0.00 4.02
2367 4907 5.181245 TCATCTTCCGGTCTTCATTTTTCAC 59.819 40.000 0.00 0.00 0.00 3.18
2368 4908 5.312895 TCATCTTCCGGTCTTCATTTTTCA 58.687 37.500 0.00 0.00 0.00 2.69
2369 4909 5.880054 TCATCTTCCGGTCTTCATTTTTC 57.120 39.130 0.00 0.00 0.00 2.29
2370 4910 5.183904 CCTTCATCTTCCGGTCTTCATTTTT 59.816 40.000 0.00 0.00 0.00 1.94
2371 4911 4.702131 CCTTCATCTTCCGGTCTTCATTTT 59.298 41.667 0.00 0.00 0.00 1.82
2372 4912 4.263506 ACCTTCATCTTCCGGTCTTCATTT 60.264 41.667 0.00 0.00 0.00 2.32
2373 4913 3.264450 ACCTTCATCTTCCGGTCTTCATT 59.736 43.478 0.00 0.00 0.00 2.57
2374 4914 2.840651 ACCTTCATCTTCCGGTCTTCAT 59.159 45.455 0.00 0.00 0.00 2.57
2375 4915 2.233922 GACCTTCATCTTCCGGTCTTCA 59.766 50.000 0.00 0.00 42.02 3.02
2376 4916 2.735762 CGACCTTCATCTTCCGGTCTTC 60.736 54.545 0.00 0.00 42.86 2.87
2377 4917 1.204941 CGACCTTCATCTTCCGGTCTT 59.795 52.381 0.00 0.00 42.86 3.01
2378 4918 0.818296 CGACCTTCATCTTCCGGTCT 59.182 55.000 0.00 0.00 42.86 3.85
2379 4919 0.531200 ACGACCTTCATCTTCCGGTC 59.469 55.000 0.00 0.00 41.89 4.79
2380 4920 0.974383 AACGACCTTCATCTTCCGGT 59.026 50.000 0.00 0.00 0.00 5.28
2381 4921 1.359848 CAACGACCTTCATCTTCCGG 58.640 55.000 0.00 0.00 0.00 5.14
2382 4922 1.337823 ACCAACGACCTTCATCTTCCG 60.338 52.381 0.00 0.00 0.00 4.30
2383 4923 2.076863 CACCAACGACCTTCATCTTCC 58.923 52.381 0.00 0.00 0.00 3.46
2384 4924 2.737252 GACACCAACGACCTTCATCTTC 59.263 50.000 0.00 0.00 0.00 2.87
2385 4925 2.550208 GGACACCAACGACCTTCATCTT 60.550 50.000 0.00 0.00 0.00 2.40
2386 4926 1.002087 GGACACCAACGACCTTCATCT 59.998 52.381 0.00 0.00 0.00 2.90
2387 4927 1.439679 GGACACCAACGACCTTCATC 58.560 55.000 0.00 0.00 0.00 2.92
2388 4928 0.320421 CGGACACCAACGACCTTCAT 60.320 55.000 0.00 0.00 0.00 2.57
2389 4929 1.068417 CGGACACCAACGACCTTCA 59.932 57.895 0.00 0.00 0.00 3.02
2390 4930 2.315386 GCGGACACCAACGACCTTC 61.315 63.158 0.00 0.00 0.00 3.46
2391 4931 2.280592 GCGGACACCAACGACCTT 60.281 61.111 0.00 0.00 0.00 3.50
2392 4932 4.657824 CGCGGACACCAACGACCT 62.658 66.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.