Multiple sequence alignment - TraesCS1B01G365100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G365100 chr1B 100.000 2476 0 0 1 2476 596037652 596040127 0.000000e+00 4573.0
1 TraesCS1B01G365100 chr1B 94.403 268 14 1 17 284 563125535 563125269 6.370000e-111 411.0
2 TraesCS1B01G365100 chr1B 91.986 287 19 4 14 298 620382420 620382136 1.380000e-107 399.0
3 TraesCS1B01G365100 chr1D 88.909 1127 60 30 598 1684 439305170 439306271 0.000000e+00 1328.0
4 TraesCS1B01G365100 chr1D 94.437 737 32 2 1749 2476 439306296 439307032 0.000000e+00 1125.0
5 TraesCS1B01G365100 chr1D 89.904 208 21 0 278 485 473712815 473712608 4.060000e-68 268.0
6 TraesCS1B01G365100 chr1D 98.529 68 1 0 484 551 439304596 439304663 1.200000e-23 121.0
7 TraesCS1B01G365100 chr1A 91.525 885 40 15 561 1423 535444921 535445792 0.000000e+00 1186.0
8 TraesCS1B01G365100 chr1A 93.539 681 25 7 1805 2476 535446185 535446855 0.000000e+00 996.0
9 TraesCS1B01G365100 chr1A 95.385 65 2 1 484 547 535444793 535444857 4.360000e-18 102.0
10 TraesCS1B01G365100 chr7B 92.466 292 17 5 8 297 75519104 75519392 1.770000e-111 412.0
11 TraesCS1B01G365100 chr7B 93.750 272 15 2 14 285 115216290 115216559 8.240000e-110 407.0
12 TraesCS1B01G365100 chr2B 94.403 268 14 1 16 283 38724500 38724234 6.370000e-111 411.0
13 TraesCS1B01G365100 chr2B 93.407 273 15 3 8 280 785934511 785934242 3.840000e-108 401.0
14 TraesCS1B01G365100 chr3B 94.074 270 15 1 14 283 51813441 51813173 2.290000e-110 409.0
15 TraesCS1B01G365100 chr3B 89.474 209 21 1 278 485 42139016 42138808 1.890000e-66 263.0
16 TraesCS1B01G365100 chr3B 77.647 170 23 9 1246 1415 511071406 511071560 3.390000e-14 89.8
17 TraesCS1B01G365100 chr5B 93.633 267 17 0 15 281 15016086 15016352 1.380000e-107 399.0
18 TraesCS1B01G365100 chr5B 86.977 215 23 4 278 491 678057640 678057430 1.140000e-58 237.0
19 TraesCS1B01G365100 chr4B 93.962 265 15 1 16 280 364162646 364162383 1.380000e-107 399.0
20 TraesCS1B01G365100 chr2A 89.372 207 22 0 278 484 552814554 552814760 6.790000e-66 261.0
21 TraesCS1B01G365100 chr3D 87.379 206 24 2 278 482 306079025 306079229 4.120000e-58 235.0
22 TraesCS1B01G365100 chr3D 97.917 48 1 0 1368 1415 392054756 392054803 1.580000e-12 84.2
23 TraesCS1B01G365100 chr7D 88.827 179 20 0 307 485 554322335 554322157 1.150000e-53 220.0
24 TraesCS1B01G365100 chr7D 80.711 197 35 2 279 472 35663704 35663508 1.530000e-32 150.0
25 TraesCS1B01G365100 chr7D 80.711 197 35 2 279 472 35723462 35723266 1.530000e-32 150.0
26 TraesCS1B01G365100 chr2D 83.654 208 34 0 278 485 586854718 586854511 1.940000e-46 196.0
27 TraesCS1B01G365100 chr3A 98.000 50 1 0 1366 1415 512308376 512308425 1.220000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G365100 chr1B 596037652 596040127 2475 False 4573.000000 4573 100.000000 1 2476 1 chr1B.!!$F1 2475
1 TraesCS1B01G365100 chr1D 439304596 439307032 2436 False 858.000000 1328 93.958333 484 2476 3 chr1D.!!$F1 1992
2 TraesCS1B01G365100 chr1A 535444793 535446855 2062 False 761.333333 1186 93.483000 484 2476 3 chr1A.!!$F1 1992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 457 0.034863 ACACTGGTTCAACCACCGTT 60.035 50.0 4.67 0.0 44.79 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1663 2313 0.038892 GTAAGAACGTGCGTGGAGGA 60.039 55.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.592885 TGTGTATTAGTGTAATACTCCCTCC 57.407 40.000 14.78 1.96 46.66 4.30
26 27 6.263842 TGTGTATTAGTGTAATACTCCCTCCG 59.736 42.308 14.78 0.00 46.66 4.63
27 28 6.264067 GTGTATTAGTGTAATACTCCCTCCGT 59.736 42.308 14.78 0.00 46.66 4.69
28 29 6.835488 TGTATTAGTGTAATACTCCCTCCGTT 59.165 38.462 14.78 0.00 46.66 4.44
29 30 5.841957 TTAGTGTAATACTCCCTCCGTTC 57.158 43.478 0.00 0.00 40.89 3.95
30 31 3.029570 AGTGTAATACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 33.17 3.62
31 32 3.029570 GTGTAATACTCCCTCCGTTCCT 58.970 50.000 0.00 0.00 0.00 3.36
32 33 3.450096 GTGTAATACTCCCTCCGTTCCTT 59.550 47.826 0.00 0.00 0.00 3.36
33 34 3.449737 TGTAATACTCCCTCCGTTCCTTG 59.550 47.826 0.00 0.00 0.00 3.61
34 35 2.544844 ATACTCCCTCCGTTCCTTGA 57.455 50.000 0.00 0.00 0.00 3.02
35 36 2.544844 TACTCCCTCCGTTCCTTGAT 57.455 50.000 0.00 0.00 0.00 2.57
36 37 2.544844 ACTCCCTCCGTTCCTTGATA 57.455 50.000 0.00 0.00 0.00 2.15
37 38 3.047695 ACTCCCTCCGTTCCTTGATAT 57.952 47.619 0.00 0.00 0.00 1.63
38 39 4.194678 ACTCCCTCCGTTCCTTGATATA 57.805 45.455 0.00 0.00 0.00 0.86
39 40 4.553678 ACTCCCTCCGTTCCTTGATATAA 58.446 43.478 0.00 0.00 0.00 0.98
40 41 4.589374 ACTCCCTCCGTTCCTTGATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
41 42 3.901844 TCCCTCCGTTCCTTGATATAAGG 59.098 47.826 0.00 0.00 38.78 2.69
42 43 3.646637 CCCTCCGTTCCTTGATATAAGGT 59.353 47.826 5.67 0.00 38.55 3.50
43 44 4.503296 CCCTCCGTTCCTTGATATAAGGTG 60.503 50.000 5.67 0.00 38.55 4.00
44 45 4.101119 CCTCCGTTCCTTGATATAAGGTGT 59.899 45.833 5.67 0.00 38.55 4.16
45 46 5.303589 CCTCCGTTCCTTGATATAAGGTGTA 59.696 44.000 5.67 0.00 38.55 2.90
46 47 6.014499 CCTCCGTTCCTTGATATAAGGTGTAT 60.014 42.308 5.67 0.00 38.55 2.29
47 48 7.177921 CCTCCGTTCCTTGATATAAGGTGTATA 59.822 40.741 5.67 0.00 38.55 1.47
48 49 8.118976 TCCGTTCCTTGATATAAGGTGTATAG 57.881 38.462 5.67 0.00 38.55 1.31
49 50 7.946219 TCCGTTCCTTGATATAAGGTGTATAGA 59.054 37.037 5.67 0.00 38.55 1.98
50 51 8.750298 CCGTTCCTTGATATAAGGTGTATAGAT 58.250 37.037 5.67 0.00 38.55 1.98
97 98 7.938140 ATAAAGTGTATTATGTTGCACCACT 57.062 32.000 0.00 0.00 33.40 4.00
98 99 5.880054 AAGTGTATTATGTTGCACCACTC 57.120 39.130 0.00 0.00 31.72 3.51
99 100 3.932710 AGTGTATTATGTTGCACCACTCG 59.067 43.478 0.00 0.00 32.75 4.18
100 101 3.682858 GTGTATTATGTTGCACCACTCGT 59.317 43.478 0.00 0.00 0.00 4.18
101 102 4.153475 GTGTATTATGTTGCACCACTCGTT 59.847 41.667 0.00 0.00 0.00 3.85
102 103 4.757657 TGTATTATGTTGCACCACTCGTTT 59.242 37.500 0.00 0.00 0.00 3.60
103 104 3.617540 TTATGTTGCACCACTCGTTTG 57.382 42.857 0.00 0.00 0.00 2.93
104 105 0.667993 ATGTTGCACCACTCGTTTGG 59.332 50.000 3.82 3.82 43.04 3.28
105 106 0.393132 TGTTGCACCACTCGTTTGGA 60.393 50.000 11.38 0.00 39.24 3.53
106 107 0.951558 GTTGCACCACTCGTTTGGAT 59.048 50.000 11.38 0.00 39.24 3.41
107 108 2.147958 GTTGCACCACTCGTTTGGATA 58.852 47.619 11.38 0.00 39.24 2.59
108 109 2.550606 GTTGCACCACTCGTTTGGATAA 59.449 45.455 11.38 2.13 39.24 1.75
109 110 3.066291 TGCACCACTCGTTTGGATAAT 57.934 42.857 11.38 0.00 39.24 1.28
110 111 3.417101 TGCACCACTCGTTTGGATAATT 58.583 40.909 11.38 0.00 39.24 1.40
111 112 3.823873 TGCACCACTCGTTTGGATAATTT 59.176 39.130 11.38 0.00 39.24 1.82
112 113 4.279671 TGCACCACTCGTTTGGATAATTTT 59.720 37.500 11.38 0.00 39.24 1.82
113 114 5.221342 TGCACCACTCGTTTGGATAATTTTT 60.221 36.000 11.38 0.00 39.24 1.94
167 168 9.730705 TTAGGCAATCTCCTATATTTTCTCATG 57.269 33.333 0.00 0.00 38.42 3.07
168 169 6.658391 AGGCAATCTCCTATATTTTCTCATGC 59.342 38.462 0.00 0.00 33.95 4.06
169 170 6.127786 GGCAATCTCCTATATTTTCTCATGCC 60.128 42.308 0.00 0.00 40.08 4.40
170 171 6.432162 GCAATCTCCTATATTTTCTCATGCCA 59.568 38.462 0.00 0.00 0.00 4.92
171 172 7.040201 GCAATCTCCTATATTTTCTCATGCCAA 60.040 37.037 0.00 0.00 0.00 4.52
172 173 9.021807 CAATCTCCTATATTTTCTCATGCCAAT 57.978 33.333 0.00 0.00 0.00 3.16
173 174 9.597681 AATCTCCTATATTTTCTCATGCCAATT 57.402 29.630 0.00 0.00 0.00 2.32
175 176 9.730705 TCTCCTATATTTTCTCATGCCAATTAG 57.269 33.333 0.00 0.00 0.00 1.73
176 177 9.512588 CTCCTATATTTTCTCATGCCAATTAGT 57.487 33.333 0.00 0.00 0.00 2.24
177 178 9.507329 TCCTATATTTTCTCATGCCAATTAGTC 57.493 33.333 0.00 0.00 0.00 2.59
178 179 9.288576 CCTATATTTTCTCATGCCAATTAGTCA 57.711 33.333 0.00 0.00 0.00 3.41
180 181 5.902613 TTTTCTCATGCCAATTAGTCAGG 57.097 39.130 0.00 0.00 0.00 3.86
181 182 4.574674 TTCTCATGCCAATTAGTCAGGT 57.425 40.909 0.00 0.00 0.00 4.00
182 183 3.877559 TCTCATGCCAATTAGTCAGGTG 58.122 45.455 0.00 0.00 0.00 4.00
183 184 3.264193 TCTCATGCCAATTAGTCAGGTGT 59.736 43.478 0.00 0.00 0.00 4.16
184 185 4.469586 TCTCATGCCAATTAGTCAGGTGTA 59.530 41.667 0.00 0.00 0.00 2.90
185 186 5.045942 TCTCATGCCAATTAGTCAGGTGTAA 60.046 40.000 0.00 0.00 0.00 2.41
186 187 5.754782 TCATGCCAATTAGTCAGGTGTAAT 58.245 37.500 0.00 0.00 0.00 1.89
187 188 6.894682 TCATGCCAATTAGTCAGGTGTAATA 58.105 36.000 0.00 0.00 0.00 0.98
188 189 7.517320 TCATGCCAATTAGTCAGGTGTAATAT 58.483 34.615 0.00 0.00 0.00 1.28
189 190 7.661437 TCATGCCAATTAGTCAGGTGTAATATC 59.339 37.037 0.00 0.00 0.00 1.63
190 191 5.989168 TGCCAATTAGTCAGGTGTAATATCG 59.011 40.000 0.00 0.00 0.00 2.92
191 192 5.107065 GCCAATTAGTCAGGTGTAATATCGC 60.107 44.000 0.00 0.00 0.00 4.58
192 193 5.408604 CCAATTAGTCAGGTGTAATATCGCC 59.591 44.000 0.00 0.00 38.17 5.54
193 194 4.595762 TTAGTCAGGTGTAATATCGCCC 57.404 45.455 0.00 0.00 38.61 6.13
194 195 2.394632 AGTCAGGTGTAATATCGCCCA 58.605 47.619 0.00 0.00 38.61 5.36
195 196 2.769663 AGTCAGGTGTAATATCGCCCAA 59.230 45.455 0.00 0.00 38.61 4.12
196 197 3.199071 AGTCAGGTGTAATATCGCCCAAA 59.801 43.478 0.00 0.00 38.61 3.28
197 198 3.942748 GTCAGGTGTAATATCGCCCAAAA 59.057 43.478 0.00 0.00 38.61 2.44
198 199 3.942748 TCAGGTGTAATATCGCCCAAAAC 59.057 43.478 0.00 0.00 38.61 2.43
199 200 3.945285 CAGGTGTAATATCGCCCAAAACT 59.055 43.478 0.00 0.00 38.61 2.66
200 201 4.398044 CAGGTGTAATATCGCCCAAAACTT 59.602 41.667 0.00 0.00 38.61 2.66
201 202 4.398044 AGGTGTAATATCGCCCAAAACTTG 59.602 41.667 0.00 0.00 38.61 3.16
202 203 4.157105 GGTGTAATATCGCCCAAAACTTGT 59.843 41.667 0.00 0.00 32.43 3.16
203 204 5.092781 GTGTAATATCGCCCAAAACTTGTG 58.907 41.667 0.00 0.00 0.00 3.33
204 205 5.004448 TGTAATATCGCCCAAAACTTGTGA 58.996 37.500 0.00 0.00 0.00 3.58
205 206 5.473846 TGTAATATCGCCCAAAACTTGTGAA 59.526 36.000 0.00 0.00 0.00 3.18
206 207 5.461032 AATATCGCCCAAAACTTGTGAAA 57.539 34.783 0.00 0.00 0.00 2.69
207 208 5.659440 ATATCGCCCAAAACTTGTGAAAT 57.341 34.783 0.00 0.00 0.00 2.17
208 209 3.810310 TCGCCCAAAACTTGTGAAATT 57.190 38.095 0.00 0.00 0.00 1.82
209 210 4.130286 TCGCCCAAAACTTGTGAAATTT 57.870 36.364 0.00 0.00 0.00 1.82
210 211 4.508662 TCGCCCAAAACTTGTGAAATTTT 58.491 34.783 0.00 0.00 0.00 1.82
211 212 4.938226 TCGCCCAAAACTTGTGAAATTTTT 59.062 33.333 0.00 0.00 0.00 1.94
233 234 8.696410 TTTTTCTTCACTTGCGTTCTTTAATT 57.304 26.923 0.00 0.00 0.00 1.40
234 235 8.696410 TTTTCTTCACTTGCGTTCTTTAATTT 57.304 26.923 0.00 0.00 0.00 1.82
235 236 7.908193 TTCTTCACTTGCGTTCTTTAATTTC 57.092 32.000 0.00 0.00 0.00 2.17
236 237 6.435428 TCTTCACTTGCGTTCTTTAATTTCC 58.565 36.000 0.00 0.00 0.00 3.13
237 238 4.778904 TCACTTGCGTTCTTTAATTTCCG 58.221 39.130 0.00 0.00 0.00 4.30
238 239 4.273969 TCACTTGCGTTCTTTAATTTCCGT 59.726 37.500 0.00 0.00 0.00 4.69
239 240 4.378616 CACTTGCGTTCTTTAATTTCCGTG 59.621 41.667 0.00 0.00 0.00 4.94
240 241 2.923643 TGCGTTCTTTAATTTCCGTGC 58.076 42.857 0.00 0.00 0.00 5.34
241 242 2.247637 GCGTTCTTTAATTTCCGTGCC 58.752 47.619 0.00 0.00 0.00 5.01
242 243 2.350964 GCGTTCTTTAATTTCCGTGCCA 60.351 45.455 0.00 0.00 0.00 4.92
243 244 3.854045 GCGTTCTTTAATTTCCGTGCCAA 60.854 43.478 0.00 0.00 0.00 4.52
244 245 4.291783 CGTTCTTTAATTTCCGTGCCAAA 58.708 39.130 0.00 0.00 0.00 3.28
245 246 4.740695 CGTTCTTTAATTTCCGTGCCAAAA 59.259 37.500 0.00 0.00 0.00 2.44
246 247 5.232414 CGTTCTTTAATTTCCGTGCCAAAAA 59.768 36.000 0.00 0.00 0.00 1.94
247 248 6.074034 CGTTCTTTAATTTCCGTGCCAAAAAT 60.074 34.615 0.00 0.00 0.00 1.82
248 249 7.517575 CGTTCTTTAATTTCCGTGCCAAAAATT 60.518 33.333 0.00 0.00 36.73 1.82
249 250 8.766151 GTTCTTTAATTTCCGTGCCAAAAATTA 58.234 29.630 0.00 0.00 35.07 1.40
250 251 9.495572 TTCTTTAATTTCCGTGCCAAAAATTAT 57.504 25.926 0.00 0.00 35.75 1.28
253 254 9.706691 TTTAATTTCCGTGCCAAAAATTATACA 57.293 25.926 0.00 0.00 35.75 2.29
254 255 9.877178 TTAATTTCCGTGCCAAAAATTATACAT 57.123 25.926 0.00 0.00 35.75 2.29
255 256 8.419076 AATTTCCGTGCCAAAAATTATACATC 57.581 30.769 0.00 0.00 32.38 3.06
256 257 5.508200 TCCGTGCCAAAAATTATACATCC 57.492 39.130 0.00 0.00 0.00 3.51
257 258 5.197451 TCCGTGCCAAAAATTATACATCCT 58.803 37.500 0.00 0.00 0.00 3.24
258 259 6.358178 TCCGTGCCAAAAATTATACATCCTA 58.642 36.000 0.00 0.00 0.00 2.94
259 260 7.001674 TCCGTGCCAAAAATTATACATCCTAT 58.998 34.615 0.00 0.00 0.00 2.57
260 261 8.158132 TCCGTGCCAAAAATTATACATCCTATA 58.842 33.333 0.00 0.00 0.00 1.31
261 262 8.956426 CCGTGCCAAAAATTATACATCCTATAT 58.044 33.333 0.00 0.00 0.00 0.86
276 277 5.369119 TCCTATATTGAGGAATGGAGGGA 57.631 43.478 0.00 0.00 42.90 4.20
277 278 5.345418 TCCTATATTGAGGAATGGAGGGAG 58.655 45.833 0.00 0.00 42.90 4.30
278 279 5.097234 CCTATATTGAGGAATGGAGGGAGT 58.903 45.833 0.00 0.00 39.15 3.85
279 280 6.047960 TCCTATATTGAGGAATGGAGGGAGTA 59.952 42.308 0.00 0.00 42.90 2.59
280 281 6.155393 CCTATATTGAGGAATGGAGGGAGTAC 59.845 46.154 0.00 0.00 39.15 2.73
281 282 3.491766 TTGAGGAATGGAGGGAGTACT 57.508 47.619 0.00 0.00 0.00 2.73
282 283 4.620086 TTGAGGAATGGAGGGAGTACTA 57.380 45.455 0.00 0.00 0.00 1.82
283 284 4.620086 TGAGGAATGGAGGGAGTACTAA 57.380 45.455 0.00 0.00 0.00 2.24
284 285 4.955335 TGAGGAATGGAGGGAGTACTAAA 58.045 43.478 0.00 0.00 0.00 1.85
285 286 5.538877 TGAGGAATGGAGGGAGTACTAAAT 58.461 41.667 0.00 0.00 0.00 1.40
286 287 6.689561 TGAGGAATGGAGGGAGTACTAAATA 58.310 40.000 0.00 0.00 0.00 1.40
287 288 6.782988 TGAGGAATGGAGGGAGTACTAAATAG 59.217 42.308 0.00 0.00 0.00 1.73
288 289 6.935036 AGGAATGGAGGGAGTACTAAATAGA 58.065 40.000 0.00 0.00 0.00 1.98
289 290 7.549141 AGGAATGGAGGGAGTACTAAATAGAT 58.451 38.462 0.00 0.00 0.00 1.98
290 291 7.456269 AGGAATGGAGGGAGTACTAAATAGATG 59.544 40.741 0.00 0.00 0.00 2.90
291 292 7.235812 GGAATGGAGGGAGTACTAAATAGATGT 59.764 40.741 0.00 0.00 0.00 3.06
292 293 9.310449 GAATGGAGGGAGTACTAAATAGATGTA 57.690 37.037 0.00 0.00 0.00 2.29
293 294 9.670442 AATGGAGGGAGTACTAAATAGATGTAA 57.330 33.333 0.00 0.00 0.00 2.41
294 295 9.670442 ATGGAGGGAGTACTAAATAGATGTAAA 57.330 33.333 0.00 0.00 0.00 2.01
295 296 9.496710 TGGAGGGAGTACTAAATAGATGTAAAA 57.503 33.333 0.00 0.00 0.00 1.52
331 332 9.691362 TTACATAAAATTGAAAAGAGAGTTGGC 57.309 29.630 0.00 0.00 0.00 4.52
332 333 7.154656 ACATAAAATTGAAAAGAGAGTTGGCC 58.845 34.615 0.00 0.00 0.00 5.36
333 334 5.612725 AAAATTGAAAAGAGAGTTGGCCA 57.387 34.783 0.00 0.00 0.00 5.36
334 335 4.861102 AATTGAAAAGAGAGTTGGCCAG 57.139 40.909 5.11 0.00 0.00 4.85
335 336 3.297134 TTGAAAAGAGAGTTGGCCAGT 57.703 42.857 5.11 0.00 0.00 4.00
336 337 2.851195 TGAAAAGAGAGTTGGCCAGTC 58.149 47.619 5.11 7.37 0.00 3.51
337 338 2.172505 TGAAAAGAGAGTTGGCCAGTCA 59.827 45.455 17.14 0.00 0.00 3.41
338 339 3.214328 GAAAAGAGAGTTGGCCAGTCAA 58.786 45.455 17.14 0.00 0.00 3.18
339 340 2.557920 AAGAGAGTTGGCCAGTCAAG 57.442 50.000 17.14 0.00 0.00 3.02
340 341 1.722034 AGAGAGTTGGCCAGTCAAGA 58.278 50.000 17.14 0.00 0.00 3.02
341 342 2.264455 AGAGAGTTGGCCAGTCAAGAT 58.736 47.619 17.14 0.00 0.00 2.40
342 343 2.027377 AGAGAGTTGGCCAGTCAAGATG 60.027 50.000 17.14 0.00 0.00 2.90
343 344 1.004044 AGAGTTGGCCAGTCAAGATGG 59.996 52.381 17.14 0.00 41.04 3.51
344 345 0.773644 AGTTGGCCAGTCAAGATGGT 59.226 50.000 5.11 0.00 40.17 3.55
345 346 1.145738 AGTTGGCCAGTCAAGATGGTT 59.854 47.619 5.11 0.00 40.17 3.67
346 347 2.375174 AGTTGGCCAGTCAAGATGGTTA 59.625 45.455 5.11 0.00 40.17 2.85
347 348 3.010584 AGTTGGCCAGTCAAGATGGTTAT 59.989 43.478 5.11 0.00 40.17 1.89
348 349 3.737559 TGGCCAGTCAAGATGGTTATT 57.262 42.857 0.00 0.00 40.17 1.40
349 350 3.355378 TGGCCAGTCAAGATGGTTATTG 58.645 45.455 0.00 0.00 40.17 1.90
350 351 2.689983 GGCCAGTCAAGATGGTTATTGG 59.310 50.000 0.00 0.00 40.17 3.16
351 352 2.689983 GCCAGTCAAGATGGTTATTGGG 59.310 50.000 0.00 0.00 40.17 4.12
352 353 3.877735 GCCAGTCAAGATGGTTATTGGGT 60.878 47.826 0.00 0.00 40.17 4.51
353 354 3.947834 CCAGTCAAGATGGTTATTGGGTC 59.052 47.826 0.00 0.00 32.85 4.46
354 355 4.567537 CCAGTCAAGATGGTTATTGGGTCA 60.568 45.833 0.00 0.00 32.85 4.02
355 356 5.009631 CAGTCAAGATGGTTATTGGGTCAA 58.990 41.667 0.00 0.00 0.00 3.18
356 357 5.476599 CAGTCAAGATGGTTATTGGGTCAAA 59.523 40.000 0.00 0.00 0.00 2.69
357 358 5.711976 AGTCAAGATGGTTATTGGGTCAAAG 59.288 40.000 0.00 0.00 0.00 2.77
358 359 5.016173 TCAAGATGGTTATTGGGTCAAAGG 58.984 41.667 0.00 0.00 0.00 3.11
359 360 4.675063 AGATGGTTATTGGGTCAAAGGT 57.325 40.909 0.00 0.00 0.00 3.50
360 361 4.344104 AGATGGTTATTGGGTCAAAGGTG 58.656 43.478 0.00 0.00 0.00 4.00
361 362 2.243810 TGGTTATTGGGTCAAAGGTGC 58.756 47.619 0.00 0.00 0.00 5.01
362 363 2.243810 GGTTATTGGGTCAAAGGTGCA 58.756 47.619 0.00 0.00 0.00 4.57
363 364 2.630580 GGTTATTGGGTCAAAGGTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
364 365 3.554129 GGTTATTGGGTCAAAGGTGCAAC 60.554 47.826 0.00 0.00 0.00 4.17
365 366 2.086610 ATTGGGTCAAAGGTGCAACT 57.913 45.000 0.00 0.00 36.74 3.16
366 367 1.859302 TTGGGTCAAAGGTGCAACTT 58.141 45.000 12.33 12.33 36.74 2.66
367 368 2.738587 TGGGTCAAAGGTGCAACTTA 57.261 45.000 19.31 0.00 36.74 2.24
368 369 2.303175 TGGGTCAAAGGTGCAACTTAC 58.697 47.619 19.31 13.26 36.74 2.34
369 370 1.265905 GGGTCAAAGGTGCAACTTACG 59.734 52.381 19.31 12.45 36.74 3.18
370 371 1.334689 GGTCAAAGGTGCAACTTACGC 60.335 52.381 19.31 10.28 36.74 4.42
371 372 1.332375 GTCAAAGGTGCAACTTACGCA 59.668 47.619 19.31 0.00 36.74 5.24
380 381 4.665833 TGCAACTTACGCACCTATATCT 57.334 40.909 0.00 0.00 33.55 1.98
381 382 5.777850 TGCAACTTACGCACCTATATCTA 57.222 39.130 0.00 0.00 33.55 1.98
382 383 5.769367 TGCAACTTACGCACCTATATCTAG 58.231 41.667 0.00 0.00 33.55 2.43
383 384 4.621886 GCAACTTACGCACCTATATCTAGC 59.378 45.833 0.00 0.00 0.00 3.42
384 385 5.769367 CAACTTACGCACCTATATCTAGCA 58.231 41.667 0.00 0.00 0.00 3.49
385 386 6.390721 CAACTTACGCACCTATATCTAGCAT 58.609 40.000 0.00 0.00 0.00 3.79
386 387 6.197364 ACTTACGCACCTATATCTAGCATC 57.803 41.667 0.00 0.00 0.00 3.91
387 388 5.125739 ACTTACGCACCTATATCTAGCATCC 59.874 44.000 0.00 0.00 0.00 3.51
388 389 3.702792 ACGCACCTATATCTAGCATCCT 58.297 45.455 0.00 0.00 0.00 3.24
389 390 3.445450 ACGCACCTATATCTAGCATCCTG 59.555 47.826 0.00 0.00 0.00 3.86
390 391 3.181482 CGCACCTATATCTAGCATCCTGG 60.181 52.174 0.00 0.00 0.00 4.45
391 392 3.133721 GCACCTATATCTAGCATCCTGGG 59.866 52.174 0.00 0.00 0.00 4.45
392 393 4.357325 CACCTATATCTAGCATCCTGGGT 58.643 47.826 0.00 0.00 0.00 4.51
393 394 4.780021 CACCTATATCTAGCATCCTGGGTT 59.220 45.833 0.00 0.00 0.00 4.11
394 395 5.249393 CACCTATATCTAGCATCCTGGGTTT 59.751 44.000 0.00 0.00 0.00 3.27
395 396 5.249393 ACCTATATCTAGCATCCTGGGTTTG 59.751 44.000 0.00 0.00 0.00 2.93
396 397 5.485353 CCTATATCTAGCATCCTGGGTTTGA 59.515 44.000 0.00 0.00 0.00 2.69
397 398 5.912149 ATATCTAGCATCCTGGGTTTGAA 57.088 39.130 0.00 0.00 0.00 2.69
398 399 4.803329 ATCTAGCATCCTGGGTTTGAAT 57.197 40.909 0.00 0.00 0.00 2.57
399 400 4.591321 TCTAGCATCCTGGGTTTGAATT 57.409 40.909 0.00 0.00 0.00 2.17
400 401 4.934356 TCTAGCATCCTGGGTTTGAATTT 58.066 39.130 0.00 0.00 0.00 1.82
401 402 4.949856 TCTAGCATCCTGGGTTTGAATTTC 59.050 41.667 0.00 0.00 0.00 2.17
402 403 2.833943 AGCATCCTGGGTTTGAATTTCC 59.166 45.455 0.00 0.00 0.00 3.13
403 404 2.833943 GCATCCTGGGTTTGAATTTCCT 59.166 45.455 0.00 0.00 0.00 3.36
404 405 3.261643 GCATCCTGGGTTTGAATTTCCTT 59.738 43.478 0.00 0.00 0.00 3.36
405 406 4.263025 GCATCCTGGGTTTGAATTTCCTTT 60.263 41.667 0.00 0.00 0.00 3.11
406 407 4.953940 TCCTGGGTTTGAATTTCCTTTG 57.046 40.909 0.00 0.00 0.00 2.77
407 408 4.551671 TCCTGGGTTTGAATTTCCTTTGA 58.448 39.130 0.00 0.00 0.00 2.69
408 409 4.343814 TCCTGGGTTTGAATTTCCTTTGAC 59.656 41.667 0.00 0.00 0.00 3.18
409 410 4.100808 CCTGGGTTTGAATTTCCTTTGACA 59.899 41.667 0.00 0.00 0.00 3.58
410 411 5.017294 TGGGTTTGAATTTCCTTTGACAC 57.983 39.130 0.00 0.00 0.00 3.67
411 412 4.467795 TGGGTTTGAATTTCCTTTGACACA 59.532 37.500 0.00 0.00 0.00 3.72
412 413 5.049828 GGGTTTGAATTTCCTTTGACACAG 58.950 41.667 0.00 0.00 0.00 3.66
413 414 5.049828 GGTTTGAATTTCCTTTGACACAGG 58.950 41.667 0.78 0.78 0.00 4.00
414 415 5.395214 GGTTTGAATTTCCTTTGACACAGGT 60.395 40.000 7.52 0.00 32.59 4.00
415 416 5.930837 TTGAATTTCCTTTGACACAGGTT 57.069 34.783 7.52 0.00 32.59 3.50
416 417 7.262048 GTTTGAATTTCCTTTGACACAGGTTA 58.738 34.615 7.52 0.00 32.59 2.85
417 418 7.595819 TTGAATTTCCTTTGACACAGGTTAT 57.404 32.000 7.52 0.46 32.59 1.89
418 419 7.595819 TGAATTTCCTTTGACACAGGTTATT 57.404 32.000 7.52 8.20 32.59 1.40
419 420 8.017418 TGAATTTCCTTTGACACAGGTTATTT 57.983 30.769 7.52 1.35 32.59 1.40
420 421 8.482128 TGAATTTCCTTTGACACAGGTTATTTT 58.518 29.630 7.52 0.00 32.59 1.82
421 422 9.325198 GAATTTCCTTTGACACAGGTTATTTTT 57.675 29.630 7.52 0.00 32.59 1.94
422 423 8.887036 ATTTCCTTTGACACAGGTTATTTTTC 57.113 30.769 7.52 0.00 32.59 2.29
423 424 7.654022 TTCCTTTGACACAGGTTATTTTTCT 57.346 32.000 7.52 0.00 32.59 2.52
424 425 8.754991 TTCCTTTGACACAGGTTATTTTTCTA 57.245 30.769 7.52 0.00 32.59 2.10
425 426 8.934023 TCCTTTGACACAGGTTATTTTTCTAT 57.066 30.769 7.52 0.00 32.59 1.98
426 427 9.362151 TCCTTTGACACAGGTTATTTTTCTATT 57.638 29.630 7.52 0.00 32.59 1.73
427 428 9.981114 CCTTTGACACAGGTTATTTTTCTATTT 57.019 29.630 0.00 0.00 0.00 1.40
449 450 2.825086 GTGTGTGACACTGGTTCAAC 57.175 50.000 17.47 0.71 45.27 3.18
450 451 1.400494 GTGTGTGACACTGGTTCAACC 59.600 52.381 17.47 0.00 45.27 3.77
452 453 1.400494 GTGTGACACTGGTTCAACCAC 59.600 52.381 4.67 0.00 44.79 4.16
453 454 1.021968 GTGACACTGGTTCAACCACC 58.978 55.000 4.67 0.00 44.79 4.61
454 455 0.462937 TGACACTGGTTCAACCACCG 60.463 55.000 4.67 1.68 44.79 4.94
455 456 0.463116 GACACTGGTTCAACCACCGT 60.463 55.000 4.67 5.41 44.79 4.83
456 457 0.034863 ACACTGGTTCAACCACCGTT 60.035 50.000 4.67 0.00 44.79 4.44
457 458 1.099689 CACTGGTTCAACCACCGTTT 58.900 50.000 4.67 0.00 44.79 3.60
458 459 1.474879 CACTGGTTCAACCACCGTTTT 59.525 47.619 4.67 0.00 44.79 2.43
459 460 2.094442 CACTGGTTCAACCACCGTTTTT 60.094 45.455 4.67 0.00 44.79 1.94
460 461 3.128938 CACTGGTTCAACCACCGTTTTTA 59.871 43.478 4.67 0.00 44.79 1.52
461 462 3.955551 ACTGGTTCAACCACCGTTTTTAT 59.044 39.130 4.67 0.00 44.79 1.40
462 463 5.008811 CACTGGTTCAACCACCGTTTTTATA 59.991 40.000 4.67 0.00 44.79 0.98
463 464 5.008911 ACTGGTTCAACCACCGTTTTTATAC 59.991 40.000 4.67 0.00 44.79 1.47
464 465 4.277921 TGGTTCAACCACCGTTTTTATACC 59.722 41.667 4.67 0.00 44.79 2.73
465 466 4.520111 GGTTCAACCACCGTTTTTATACCT 59.480 41.667 0.01 0.00 38.42 3.08
466 467 5.335113 GGTTCAACCACCGTTTTTATACCTC 60.335 44.000 0.01 0.00 38.42 3.85
467 468 4.325972 TCAACCACCGTTTTTATACCTCC 58.674 43.478 0.00 0.00 0.00 4.30
468 469 4.041938 TCAACCACCGTTTTTATACCTCCT 59.958 41.667 0.00 0.00 0.00 3.69
469 470 3.946606 ACCACCGTTTTTATACCTCCTG 58.053 45.455 0.00 0.00 0.00 3.86
470 471 3.328637 ACCACCGTTTTTATACCTCCTGT 59.671 43.478 0.00 0.00 0.00 4.00
471 472 4.202493 ACCACCGTTTTTATACCTCCTGTT 60.202 41.667 0.00 0.00 0.00 3.16
472 473 4.393990 CCACCGTTTTTATACCTCCTGTTC 59.606 45.833 0.00 0.00 0.00 3.18
473 474 4.998672 CACCGTTTTTATACCTCCTGTTCA 59.001 41.667 0.00 0.00 0.00 3.18
474 475 5.646360 CACCGTTTTTATACCTCCTGTTCAT 59.354 40.000 0.00 0.00 0.00 2.57
475 476 5.646360 ACCGTTTTTATACCTCCTGTTCATG 59.354 40.000 0.00 0.00 0.00 3.07
476 477 5.448632 CCGTTTTTATACCTCCTGTTCATGC 60.449 44.000 0.00 0.00 0.00 4.06
477 478 5.123186 CGTTTTTATACCTCCTGTTCATGCA 59.877 40.000 0.00 0.00 0.00 3.96
478 479 6.348950 CGTTTTTATACCTCCTGTTCATGCAA 60.349 38.462 0.00 0.00 0.00 4.08
479 480 7.375053 GTTTTTATACCTCCTGTTCATGCAAA 58.625 34.615 0.00 0.00 0.00 3.68
480 481 7.531857 TTTTATACCTCCTGTTCATGCAAAA 57.468 32.000 0.00 0.00 0.00 2.44
481 482 7.531857 TTTATACCTCCTGTTCATGCAAAAA 57.468 32.000 0.00 0.00 0.00 1.94
482 483 3.733443 ACCTCCTGTTCATGCAAAAAC 57.267 42.857 7.44 7.44 0.00 2.43
551 586 0.798776 GCAGTTGGTTGATCTGACGG 59.201 55.000 0.00 0.00 0.00 4.79
552 587 1.608025 GCAGTTGGTTGATCTGACGGA 60.608 52.381 0.00 0.00 0.00 4.69
554 589 1.002087 AGTTGGTTGATCTGACGGACC 59.998 52.381 0.00 0.00 0.00 4.46
555 590 0.037697 TTGGTTGATCTGACGGACCG 60.038 55.000 13.61 13.61 33.07 4.79
556 591 1.810030 GGTTGATCTGACGGACCGC 60.810 63.158 15.39 7.62 0.00 5.68
557 592 2.158959 GTTGATCTGACGGACCGCG 61.159 63.158 15.39 0.00 0.00 6.46
777 1272 2.760385 CCTCTCCCCCACCGTCTC 60.760 72.222 0.00 0.00 0.00 3.36
797 1292 3.014085 ATACCACCAGACGTGCGGG 62.014 63.158 0.00 0.00 41.53 6.13
856 1351 3.067480 GACGCGGTGGGACGGAATA 62.067 63.158 12.47 0.00 0.00 1.75
858 1353 2.897972 GCGGTGGGACGGAATACT 59.102 61.111 0.00 0.00 0.00 2.12
975 1477 1.390565 CACCTCGTCCGATCCTACTT 58.609 55.000 0.00 0.00 0.00 2.24
981 1483 1.475280 CGTCCGATCCTACTTTGGTCA 59.525 52.381 0.00 0.00 0.00 4.02
983 1485 2.232941 GTCCGATCCTACTTTGGTCACA 59.767 50.000 0.00 0.00 0.00 3.58
985 1487 2.233922 CCGATCCTACTTTGGTCACAGT 59.766 50.000 0.00 0.00 0.00 3.55
987 1489 4.081862 CCGATCCTACTTTGGTCACAGTTA 60.082 45.833 0.00 0.00 0.00 2.24
988 1490 5.475719 CGATCCTACTTTGGTCACAGTTAA 58.524 41.667 0.00 0.00 0.00 2.01
989 1491 5.929992 CGATCCTACTTTGGTCACAGTTAAA 59.070 40.000 0.00 0.00 0.00 1.52
1074 1576 3.179265 CACGCCGACGATGACCAC 61.179 66.667 0.00 0.00 43.93 4.16
1075 1577 3.676605 ACGCCGACGATGACCACA 61.677 61.111 0.00 0.00 43.93 4.17
1077 1579 2.444624 CGCCGACGATGACCACAAG 61.445 63.158 0.00 0.00 43.93 3.16
1078 1580 2.740714 GCCGACGATGACCACAAGC 61.741 63.158 0.00 0.00 0.00 4.01
1079 1581 2.100631 CCGACGATGACCACAAGCC 61.101 63.158 0.00 0.00 0.00 4.35
1080 1582 1.374125 CGACGATGACCACAAGCCA 60.374 57.895 0.00 0.00 0.00 4.75
1081 1583 1.626654 CGACGATGACCACAAGCCAC 61.627 60.000 0.00 0.00 0.00 5.01
1082 1584 0.320771 GACGATGACCACAAGCCACT 60.321 55.000 0.00 0.00 0.00 4.00
1202 1725 2.232941 GGTGGAAAGACGGTACTGATCA 59.767 50.000 9.17 0.00 0.00 2.92
1248 1771 3.957535 GGCGGCGGCAAGATCATG 61.958 66.667 29.41 0.00 42.47 3.07
1471 2090 7.945033 AACACGTGCATAAATTTCTCAAAAT 57.055 28.000 17.22 0.00 36.64 1.82
1544 2181 5.535333 TGTTGCTAGTACTACCAGTTTGTC 58.465 41.667 0.00 0.00 0.00 3.18
1564 2201 9.309516 GTTTGTCAGTATCGGTTAATGAGATTA 57.690 33.333 0.00 0.00 35.70 1.75
1576 2213 7.574967 CGGTTAATGAGATTAGCACCAAGTTTT 60.575 37.037 0.00 0.00 29.84 2.43
1587 2233 4.709886 AGCACCAAGTTTTGAACCTACTTT 59.290 37.500 0.00 0.00 30.08 2.66
1605 2251 4.359706 ACTTTTCTTGCCGTGTGAAAATC 58.640 39.130 0.00 0.00 38.47 2.17
1663 2313 4.530161 AGAGTTCCACACTAAAGCTCATCT 59.470 41.667 0.00 0.00 35.01 2.90
1668 2318 3.431486 CCACACTAAAGCTCATCTCCTCC 60.431 52.174 0.00 0.00 0.00 4.30
1684 2334 1.060713 CTCCACGCACGTTCTTACTG 58.939 55.000 0.00 0.00 0.00 2.74
1685 2335 0.386476 TCCACGCACGTTCTTACTGT 59.614 50.000 0.00 0.00 0.00 3.55
1686 2336 1.608109 TCCACGCACGTTCTTACTGTA 59.392 47.619 0.00 0.00 0.00 2.74
1687 2337 1.717645 CCACGCACGTTCTTACTGTAC 59.282 52.381 0.00 0.00 0.00 2.90
1688 2338 2.606308 CCACGCACGTTCTTACTGTACT 60.606 50.000 0.00 0.00 0.00 2.73
1689 2339 3.365264 CCACGCACGTTCTTACTGTACTA 60.365 47.826 0.00 0.00 0.00 1.82
1690 2340 4.409570 CACGCACGTTCTTACTGTACTAT 58.590 43.478 0.00 0.00 0.00 2.12
1695 2345 6.356452 CGCACGTTCTTACTGTACTATACATC 59.644 42.308 0.00 0.00 38.15 3.06
1697 2347 7.680350 GCACGTTCTTACTGTACTATACATCCA 60.680 40.741 0.00 0.00 38.15 3.41
1714 2364 4.402155 ACATCCAAATCCGCACAACAATAT 59.598 37.500 0.00 0.00 0.00 1.28
1715 2365 5.592282 ACATCCAAATCCGCACAACAATATA 59.408 36.000 0.00 0.00 0.00 0.86
1719 2369 5.006844 CCAAATCCGCACAACAATATACGTA 59.993 40.000 0.00 0.00 0.00 3.57
1721 2371 3.446799 TCCGCACAACAATATACGTACC 58.553 45.455 0.00 0.00 0.00 3.34
1961 2617 1.265365 GAAGTCTGCTTGCTCACCAAC 59.735 52.381 0.00 0.00 34.61 3.77
1978 2634 2.044806 AACACACGCCAGCTTCTCCT 62.045 55.000 0.00 0.00 0.00 3.69
2087 2755 1.355718 GGGAGGCCATGGATCAGGAA 61.356 60.000 18.40 0.00 0.00 3.36
2258 2926 4.436998 CGGTCACGCTCCTGGACC 62.437 72.222 0.00 0.00 46.01 4.46
2264 2932 4.778415 CGCTCCTGGACCACGTCG 62.778 72.222 0.00 0.00 32.65 5.12
2300 2968 2.088763 CAACGACGACTGCAGCGAT 61.089 57.895 28.70 16.90 0.00 4.58
2363 3031 4.056125 CACGTCCTGGCTGAGCGA 62.056 66.667 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.890979 ACGGAGGGAGTATTACACTAATAC 57.109 41.667 4.59 4.59 46.82 1.89
5 6 6.491403 GGAACGGAGGGAGTATTACACTAATA 59.509 42.308 0.00 0.00 37.72 0.98
6 7 5.303845 GGAACGGAGGGAGTATTACACTAAT 59.696 44.000 0.00 0.00 37.72 1.73
7 8 4.646492 GGAACGGAGGGAGTATTACACTAA 59.354 45.833 0.00 0.00 37.72 2.24
8 9 4.079558 AGGAACGGAGGGAGTATTACACTA 60.080 45.833 0.00 0.00 37.72 2.74
9 10 3.029570 GGAACGGAGGGAGTATTACACT 58.970 50.000 0.00 0.00 41.47 3.55
10 11 3.029570 AGGAACGGAGGGAGTATTACAC 58.970 50.000 0.00 0.00 0.00 2.90
11 12 3.393426 AGGAACGGAGGGAGTATTACA 57.607 47.619 0.00 0.00 0.00 2.41
12 13 3.703052 TCAAGGAACGGAGGGAGTATTAC 59.297 47.826 0.00 0.00 0.00 1.89
13 14 3.985127 TCAAGGAACGGAGGGAGTATTA 58.015 45.455 0.00 0.00 0.00 0.98
14 15 2.829023 TCAAGGAACGGAGGGAGTATT 58.171 47.619 0.00 0.00 0.00 1.89
15 16 2.544844 TCAAGGAACGGAGGGAGTAT 57.455 50.000 0.00 0.00 0.00 2.12
16 17 2.544844 ATCAAGGAACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
17 18 2.544844 TATCAAGGAACGGAGGGAGT 57.455 50.000 0.00 0.00 0.00 3.85
18 19 4.021016 CCTTATATCAAGGAACGGAGGGAG 60.021 50.000 0.00 0.00 39.81 4.30
19 20 3.901844 CCTTATATCAAGGAACGGAGGGA 59.098 47.826 0.00 0.00 39.81 4.20
20 21 3.646637 ACCTTATATCAAGGAACGGAGGG 59.353 47.826 9.96 0.00 39.81 4.30
21 22 4.101119 ACACCTTATATCAAGGAACGGAGG 59.899 45.833 9.96 0.00 39.81 4.30
22 23 5.277857 ACACCTTATATCAAGGAACGGAG 57.722 43.478 9.96 0.00 39.81 4.63
23 24 6.989155 ATACACCTTATATCAAGGAACGGA 57.011 37.500 9.96 0.00 39.81 4.69
24 25 8.118976 TCTATACACCTTATATCAAGGAACGG 57.881 38.462 9.96 0.05 39.81 4.44
71 72 9.627123 AGTGGTGCAACATAATACACTTTATAT 57.373 29.630 8.20 0.00 39.98 0.86
72 73 9.104965 GAGTGGTGCAACATAATACACTTTATA 57.895 33.333 8.20 0.00 39.98 0.98
73 74 7.201609 CGAGTGGTGCAACATAATACACTTTAT 60.202 37.037 8.20 0.00 39.98 1.40
74 75 6.091577 CGAGTGGTGCAACATAATACACTTTA 59.908 38.462 8.20 0.00 39.98 1.85
75 76 5.106712 CGAGTGGTGCAACATAATACACTTT 60.107 40.000 8.20 0.00 39.98 2.66
76 77 4.391830 CGAGTGGTGCAACATAATACACTT 59.608 41.667 8.20 0.00 39.98 3.16
77 78 3.932710 CGAGTGGTGCAACATAATACACT 59.067 43.478 8.20 0.00 39.98 3.55
78 79 3.682858 ACGAGTGGTGCAACATAATACAC 59.317 43.478 8.20 0.00 39.98 2.90
79 80 3.932822 ACGAGTGGTGCAACATAATACA 58.067 40.909 8.20 0.00 39.98 2.29
80 81 4.939509 AACGAGTGGTGCAACATAATAC 57.060 40.909 8.20 0.00 39.98 1.89
81 82 4.155099 CCAAACGAGTGGTGCAACATAATA 59.845 41.667 8.20 0.00 39.98 0.98
82 83 3.057596 CCAAACGAGTGGTGCAACATAAT 60.058 43.478 8.20 0.00 39.98 1.28
83 84 2.292016 CCAAACGAGTGGTGCAACATAA 59.708 45.455 8.20 0.00 39.98 1.90
84 85 1.876799 CCAAACGAGTGGTGCAACATA 59.123 47.619 8.20 0.00 39.98 2.29
85 86 0.667993 CCAAACGAGTGGTGCAACAT 59.332 50.000 8.20 0.00 39.98 2.71
86 87 0.393132 TCCAAACGAGTGGTGCAACA 60.393 50.000 0.00 0.00 39.98 3.33
87 88 0.951558 ATCCAAACGAGTGGTGCAAC 59.048 50.000 0.00 0.00 39.88 4.17
88 89 2.552599 TATCCAAACGAGTGGTGCAA 57.447 45.000 8.62 0.00 39.88 4.08
89 90 2.552599 TTATCCAAACGAGTGGTGCA 57.447 45.000 8.62 0.00 39.88 4.57
90 91 4.434713 AAATTATCCAAACGAGTGGTGC 57.565 40.909 8.62 0.00 39.88 5.01
141 142 9.730705 CATGAGAAAATATAGGAGATTGCCTAA 57.269 33.333 0.00 0.00 43.39 2.69
142 143 7.826252 GCATGAGAAAATATAGGAGATTGCCTA 59.174 37.037 0.00 0.00 44.23 3.93
143 144 6.658391 GCATGAGAAAATATAGGAGATTGCCT 59.342 38.462 0.00 0.00 42.15 4.75
144 145 6.127786 GGCATGAGAAAATATAGGAGATTGCC 60.128 42.308 0.00 0.00 36.91 4.52
145 146 6.432162 TGGCATGAGAAAATATAGGAGATTGC 59.568 38.462 0.00 0.00 0.00 3.56
146 147 7.991084 TGGCATGAGAAAATATAGGAGATTG 57.009 36.000 0.00 0.00 0.00 2.67
147 148 9.597681 AATTGGCATGAGAAAATATAGGAGATT 57.402 29.630 0.00 0.00 0.00 2.40
149 150 9.730705 CTAATTGGCATGAGAAAATATAGGAGA 57.269 33.333 0.00 0.00 0.00 3.71
150 151 9.512588 ACTAATTGGCATGAGAAAATATAGGAG 57.487 33.333 0.00 0.00 0.00 3.69
151 152 9.507329 GACTAATTGGCATGAGAAAATATAGGA 57.493 33.333 0.00 0.00 0.00 2.94
152 153 9.288576 TGACTAATTGGCATGAGAAAATATAGG 57.711 33.333 0.00 0.00 0.00 2.57
154 155 9.288576 CCTGACTAATTGGCATGAGAAAATATA 57.711 33.333 0.00 0.00 30.31 0.86
155 156 7.781693 ACCTGACTAATTGGCATGAGAAAATAT 59.218 33.333 0.00 0.00 30.31 1.28
156 157 7.067372 CACCTGACTAATTGGCATGAGAAAATA 59.933 37.037 0.00 0.00 30.31 1.40
157 158 5.954150 ACCTGACTAATTGGCATGAGAAAAT 59.046 36.000 0.00 0.00 30.31 1.82
158 159 5.183713 CACCTGACTAATTGGCATGAGAAAA 59.816 40.000 0.00 0.00 30.31 2.29
159 160 4.701651 CACCTGACTAATTGGCATGAGAAA 59.298 41.667 0.00 0.00 30.31 2.52
160 161 4.263462 ACACCTGACTAATTGGCATGAGAA 60.263 41.667 0.00 0.00 30.31 2.87
161 162 3.264193 ACACCTGACTAATTGGCATGAGA 59.736 43.478 0.00 0.00 30.31 3.27
162 163 3.614092 ACACCTGACTAATTGGCATGAG 58.386 45.455 0.00 0.00 30.31 2.90
163 164 3.719268 ACACCTGACTAATTGGCATGA 57.281 42.857 0.00 0.00 30.31 3.07
164 165 7.360353 CGATATTACACCTGACTAATTGGCATG 60.360 40.741 0.00 0.00 30.31 4.06
165 166 6.650807 CGATATTACACCTGACTAATTGGCAT 59.349 38.462 0.00 0.00 30.31 4.40
166 167 5.989168 CGATATTACACCTGACTAATTGGCA 59.011 40.000 0.00 0.00 0.00 4.92
167 168 5.107065 GCGATATTACACCTGACTAATTGGC 60.107 44.000 0.00 0.00 0.00 4.52
168 169 5.408604 GGCGATATTACACCTGACTAATTGG 59.591 44.000 0.00 0.00 0.00 3.16
169 170 5.408604 GGGCGATATTACACCTGACTAATTG 59.591 44.000 0.00 0.00 0.00 2.32
170 171 5.071250 TGGGCGATATTACACCTGACTAATT 59.929 40.000 0.00 0.00 0.00 1.40
171 172 4.591498 TGGGCGATATTACACCTGACTAAT 59.409 41.667 0.00 0.00 0.00 1.73
172 173 3.962063 TGGGCGATATTACACCTGACTAA 59.038 43.478 0.00 0.00 0.00 2.24
173 174 3.568443 TGGGCGATATTACACCTGACTA 58.432 45.455 0.00 0.00 0.00 2.59
174 175 2.394632 TGGGCGATATTACACCTGACT 58.605 47.619 0.00 0.00 0.00 3.41
175 176 2.902705 TGGGCGATATTACACCTGAC 57.097 50.000 0.00 0.00 0.00 3.51
176 177 3.916359 TTTGGGCGATATTACACCTGA 57.084 42.857 0.00 0.00 0.00 3.86
177 178 3.945285 AGTTTTGGGCGATATTACACCTG 59.055 43.478 0.00 0.00 0.00 4.00
178 179 4.230745 AGTTTTGGGCGATATTACACCT 57.769 40.909 0.00 0.00 0.00 4.00
179 180 4.157105 ACAAGTTTTGGGCGATATTACACC 59.843 41.667 0.00 0.00 34.12 4.16
180 181 5.092781 CACAAGTTTTGGGCGATATTACAC 58.907 41.667 0.00 0.00 34.12 2.90
181 182 5.004448 TCACAAGTTTTGGGCGATATTACA 58.996 37.500 0.00 0.00 32.92 2.41
182 183 5.554822 TCACAAGTTTTGGGCGATATTAC 57.445 39.130 0.00 0.00 32.92 1.89
183 184 6.576662 TTTCACAAGTTTTGGGCGATATTA 57.423 33.333 0.00 0.00 32.92 0.98
184 185 5.461032 TTTCACAAGTTTTGGGCGATATT 57.539 34.783 0.00 0.00 32.92 1.28
185 186 5.659440 ATTTCACAAGTTTTGGGCGATAT 57.341 34.783 0.00 0.00 32.92 1.63
186 187 5.461032 AATTTCACAAGTTTTGGGCGATA 57.539 34.783 0.00 0.00 32.92 2.92
187 188 4.335400 AATTTCACAAGTTTTGGGCGAT 57.665 36.364 0.00 0.00 32.92 4.58
188 189 3.810310 AATTTCACAAGTTTTGGGCGA 57.190 38.095 0.00 0.00 32.92 5.54
189 190 4.873768 AAAATTTCACAAGTTTTGGGCG 57.126 36.364 0.00 0.00 32.92 6.13
219 220 3.301706 GCACGGAAATTAAAGAACGCAA 58.698 40.909 0.00 0.00 0.00 4.85
220 221 2.350964 GGCACGGAAATTAAAGAACGCA 60.351 45.455 0.00 0.00 0.00 5.24
221 222 2.247637 GGCACGGAAATTAAAGAACGC 58.752 47.619 0.00 0.00 0.00 4.84
222 223 3.546002 TGGCACGGAAATTAAAGAACG 57.454 42.857 0.00 0.00 0.00 3.95
223 224 6.591313 TTTTTGGCACGGAAATTAAAGAAC 57.409 33.333 0.00 0.00 0.00 3.01
224 225 7.793927 AATTTTTGGCACGGAAATTAAAGAA 57.206 28.000 11.48 0.00 35.01 2.52
227 228 9.706691 TGTATAATTTTTGGCACGGAAATTAAA 57.293 25.926 18.49 10.20 39.36 1.52
228 229 9.877178 ATGTATAATTTTTGGCACGGAAATTAA 57.123 25.926 18.49 9.22 39.36 1.40
229 230 9.522804 GATGTATAATTTTTGGCACGGAAATTA 57.477 29.630 17.59 17.59 39.82 1.40
230 231 7.494298 GGATGTATAATTTTTGGCACGGAAATT 59.506 33.333 15.37 15.37 38.39 1.82
231 232 6.983890 GGATGTATAATTTTTGGCACGGAAAT 59.016 34.615 0.00 0.00 0.00 2.17
232 233 6.153680 AGGATGTATAATTTTTGGCACGGAAA 59.846 34.615 0.00 0.00 0.00 3.13
233 234 5.654650 AGGATGTATAATTTTTGGCACGGAA 59.345 36.000 0.00 0.00 0.00 4.30
234 235 5.197451 AGGATGTATAATTTTTGGCACGGA 58.803 37.500 0.00 0.00 0.00 4.69
235 236 5.514274 AGGATGTATAATTTTTGGCACGG 57.486 39.130 0.00 0.00 0.00 4.94
248 249 9.439461 CCTCCATTCCTCAATATAGGATGTATA 57.561 37.037 0.00 0.00 45.14 1.47
249 250 7.349330 CCCTCCATTCCTCAATATAGGATGTAT 59.651 40.741 0.00 0.00 45.14 2.29
250 251 6.673978 CCCTCCATTCCTCAATATAGGATGTA 59.326 42.308 0.00 0.00 45.14 2.29
251 252 5.490357 CCCTCCATTCCTCAATATAGGATGT 59.510 44.000 0.00 0.00 45.14 3.06
252 253 5.728253 TCCCTCCATTCCTCAATATAGGATG 59.272 44.000 0.00 0.00 45.14 3.51
253 254 5.932238 TCCCTCCATTCCTCAATATAGGAT 58.068 41.667 0.00 0.00 45.14 3.24
254 255 5.162715 ACTCCCTCCATTCCTCAATATAGGA 60.163 44.000 0.00 0.00 44.12 2.94
255 256 5.097234 ACTCCCTCCATTCCTCAATATAGG 58.903 45.833 0.00 0.00 38.06 2.57
256 257 6.957020 AGTACTCCCTCCATTCCTCAATATAG 59.043 42.308 0.00 0.00 0.00 1.31
257 258 6.875469 AGTACTCCCTCCATTCCTCAATATA 58.125 40.000 0.00 0.00 0.00 0.86
258 259 5.731924 AGTACTCCCTCCATTCCTCAATAT 58.268 41.667 0.00 0.00 0.00 1.28
259 260 5.157770 AGTACTCCCTCCATTCCTCAATA 57.842 43.478 0.00 0.00 0.00 1.90
260 261 4.014273 AGTACTCCCTCCATTCCTCAAT 57.986 45.455 0.00 0.00 0.00 2.57
261 262 3.491766 AGTACTCCCTCCATTCCTCAA 57.508 47.619 0.00 0.00 0.00 3.02
262 263 4.620086 TTAGTACTCCCTCCATTCCTCA 57.380 45.455 0.00 0.00 0.00 3.86
263 264 7.011382 TCTATTTAGTACTCCCTCCATTCCTC 58.989 42.308 0.00 0.00 0.00 3.71
264 265 6.935036 TCTATTTAGTACTCCCTCCATTCCT 58.065 40.000 0.00 0.00 0.00 3.36
265 266 7.235812 ACATCTATTTAGTACTCCCTCCATTCC 59.764 40.741 0.00 0.00 0.00 3.01
266 267 8.196378 ACATCTATTTAGTACTCCCTCCATTC 57.804 38.462 0.00 0.00 0.00 2.67
267 268 9.670442 TTACATCTATTTAGTACTCCCTCCATT 57.330 33.333 0.00 0.00 0.00 3.16
268 269 9.670442 TTTACATCTATTTAGTACTCCCTCCAT 57.330 33.333 0.00 0.00 0.00 3.41
269 270 9.496710 TTTTACATCTATTTAGTACTCCCTCCA 57.503 33.333 0.00 0.00 0.00 3.86
305 306 9.691362 GCCAACTCTCTTTTCAATTTTATGTAA 57.309 29.630 0.00 0.00 0.00 2.41
306 307 8.303876 GGCCAACTCTCTTTTCAATTTTATGTA 58.696 33.333 0.00 0.00 0.00 2.29
307 308 7.154656 GGCCAACTCTCTTTTCAATTTTATGT 58.845 34.615 0.00 0.00 0.00 2.29
308 309 7.153985 TGGCCAACTCTCTTTTCAATTTTATG 58.846 34.615 0.61 0.00 0.00 1.90
309 310 7.015584 ACTGGCCAACTCTCTTTTCAATTTTAT 59.984 33.333 7.01 0.00 0.00 1.40
310 311 6.323739 ACTGGCCAACTCTCTTTTCAATTTTA 59.676 34.615 7.01 0.00 0.00 1.52
311 312 5.129320 ACTGGCCAACTCTCTTTTCAATTTT 59.871 36.000 7.01 0.00 0.00 1.82
312 313 4.651045 ACTGGCCAACTCTCTTTTCAATTT 59.349 37.500 7.01 0.00 0.00 1.82
313 314 4.218312 ACTGGCCAACTCTCTTTTCAATT 58.782 39.130 7.01 0.00 0.00 2.32
314 315 3.823304 GACTGGCCAACTCTCTTTTCAAT 59.177 43.478 7.01 0.00 0.00 2.57
315 316 3.214328 GACTGGCCAACTCTCTTTTCAA 58.786 45.455 7.01 0.00 0.00 2.69
316 317 2.172505 TGACTGGCCAACTCTCTTTTCA 59.827 45.455 7.01 0.00 0.00 2.69
317 318 2.851195 TGACTGGCCAACTCTCTTTTC 58.149 47.619 7.01 0.00 0.00 2.29
318 319 3.117888 TCTTGACTGGCCAACTCTCTTTT 60.118 43.478 7.01 0.00 0.00 2.27
319 320 2.439507 TCTTGACTGGCCAACTCTCTTT 59.560 45.455 7.01 0.00 0.00 2.52
320 321 2.050144 TCTTGACTGGCCAACTCTCTT 58.950 47.619 7.01 0.00 0.00 2.85
321 322 1.722034 TCTTGACTGGCCAACTCTCT 58.278 50.000 7.01 0.00 0.00 3.10
322 323 2.354259 CATCTTGACTGGCCAACTCTC 58.646 52.381 7.01 0.00 0.00 3.20
323 324 1.004044 CCATCTTGACTGGCCAACTCT 59.996 52.381 7.01 0.00 0.00 3.24
324 325 1.271597 ACCATCTTGACTGGCCAACTC 60.272 52.381 7.01 4.86 37.27 3.01
325 326 0.773644 ACCATCTTGACTGGCCAACT 59.226 50.000 7.01 0.00 37.27 3.16
326 327 1.620822 AACCATCTTGACTGGCCAAC 58.379 50.000 7.01 4.58 37.27 3.77
327 328 3.737559 ATAACCATCTTGACTGGCCAA 57.262 42.857 7.01 0.00 37.27 4.52
328 329 3.355378 CAATAACCATCTTGACTGGCCA 58.645 45.455 4.71 4.71 37.27 5.36
329 330 2.689983 CCAATAACCATCTTGACTGGCC 59.310 50.000 0.00 0.00 37.27 5.36
330 331 2.689983 CCCAATAACCATCTTGACTGGC 59.310 50.000 0.00 0.00 37.27 4.85
331 332 3.947834 GACCCAATAACCATCTTGACTGG 59.052 47.826 0.00 0.00 39.80 4.00
332 333 4.588899 TGACCCAATAACCATCTTGACTG 58.411 43.478 0.00 0.00 0.00 3.51
333 334 4.927267 TGACCCAATAACCATCTTGACT 57.073 40.909 0.00 0.00 0.00 3.41
334 335 5.105756 CCTTTGACCCAATAACCATCTTGAC 60.106 44.000 0.00 0.00 0.00 3.18
335 336 5.016173 CCTTTGACCCAATAACCATCTTGA 58.984 41.667 0.00 0.00 0.00 3.02
336 337 4.772100 ACCTTTGACCCAATAACCATCTTG 59.228 41.667 0.00 0.00 0.00 3.02
337 338 4.772100 CACCTTTGACCCAATAACCATCTT 59.228 41.667 0.00 0.00 0.00 2.40
338 339 4.344104 CACCTTTGACCCAATAACCATCT 58.656 43.478 0.00 0.00 0.00 2.90
339 340 3.119137 GCACCTTTGACCCAATAACCATC 60.119 47.826 0.00 0.00 0.00 3.51
340 341 2.831526 GCACCTTTGACCCAATAACCAT 59.168 45.455 0.00 0.00 0.00 3.55
341 342 2.243810 GCACCTTTGACCCAATAACCA 58.756 47.619 0.00 0.00 0.00 3.67
342 343 2.243810 TGCACCTTTGACCCAATAACC 58.756 47.619 0.00 0.00 0.00 2.85
343 344 3.320826 AGTTGCACCTTTGACCCAATAAC 59.679 43.478 0.00 0.00 0.00 1.89
344 345 3.571590 AGTTGCACCTTTGACCCAATAA 58.428 40.909 0.00 0.00 0.00 1.40
345 346 3.237268 AGTTGCACCTTTGACCCAATA 57.763 42.857 0.00 0.00 0.00 1.90
346 347 2.086610 AGTTGCACCTTTGACCCAAT 57.913 45.000 0.00 0.00 0.00 3.16
347 348 1.859302 AAGTTGCACCTTTGACCCAA 58.141 45.000 0.00 0.00 0.00 4.12
348 349 2.303175 GTAAGTTGCACCTTTGACCCA 58.697 47.619 0.40 0.00 0.00 4.51
349 350 1.265905 CGTAAGTTGCACCTTTGACCC 59.734 52.381 0.40 0.00 0.00 4.46
350 351 1.334689 GCGTAAGTTGCACCTTTGACC 60.335 52.381 0.40 0.00 41.68 4.02
351 352 1.332375 TGCGTAAGTTGCACCTTTGAC 59.668 47.619 0.40 0.00 37.44 3.18
352 353 1.669604 TGCGTAAGTTGCACCTTTGA 58.330 45.000 0.40 0.00 37.44 2.69
359 360 4.665833 AGATATAGGTGCGTAAGTTGCA 57.334 40.909 0.00 0.00 40.70 4.08
360 361 4.621886 GCTAGATATAGGTGCGTAAGTTGC 59.378 45.833 0.00 0.00 41.68 4.17
361 362 5.769367 TGCTAGATATAGGTGCGTAAGTTG 58.231 41.667 0.00 0.00 41.68 3.16
362 363 6.350277 GGATGCTAGATATAGGTGCGTAAGTT 60.350 42.308 0.00 0.00 41.68 2.66
363 364 5.125739 GGATGCTAGATATAGGTGCGTAAGT 59.874 44.000 0.00 0.00 41.68 2.24
364 365 5.358442 AGGATGCTAGATATAGGTGCGTAAG 59.642 44.000 0.00 0.00 43.44 2.34
365 366 5.125578 CAGGATGCTAGATATAGGTGCGTAA 59.874 44.000 0.00 0.00 0.00 3.18
366 367 4.640647 CAGGATGCTAGATATAGGTGCGTA 59.359 45.833 0.00 0.00 0.00 4.42
367 368 3.445450 CAGGATGCTAGATATAGGTGCGT 59.555 47.826 0.00 0.00 0.00 5.24
368 369 3.181482 CCAGGATGCTAGATATAGGTGCG 60.181 52.174 0.00 0.00 31.97 5.34
369 370 3.133721 CCCAGGATGCTAGATATAGGTGC 59.866 52.174 0.00 0.00 31.97 5.01
370 371 4.357325 ACCCAGGATGCTAGATATAGGTG 58.643 47.826 0.00 0.00 31.97 4.00
371 372 4.701333 ACCCAGGATGCTAGATATAGGT 57.299 45.455 0.00 0.00 31.97 3.08
372 373 5.485353 TCAAACCCAGGATGCTAGATATAGG 59.515 44.000 0.00 0.00 31.97 2.57
373 374 6.611613 TCAAACCCAGGATGCTAGATATAG 57.388 41.667 0.00 0.00 31.97 1.31
374 375 7.574021 ATTCAAACCCAGGATGCTAGATATA 57.426 36.000 0.00 0.00 31.97 0.86
375 376 5.912149 TTCAAACCCAGGATGCTAGATAT 57.088 39.130 0.00 0.00 31.97 1.63
376 377 5.912149 ATTCAAACCCAGGATGCTAGATA 57.088 39.130 0.00 0.00 31.97 1.98
377 378 4.803329 ATTCAAACCCAGGATGCTAGAT 57.197 40.909 0.00 0.00 31.97 1.98
378 379 4.591321 AATTCAAACCCAGGATGCTAGA 57.409 40.909 0.00 0.00 31.97 2.43
379 380 4.098501 GGAAATTCAAACCCAGGATGCTAG 59.901 45.833 0.00 0.00 31.97 3.42
380 381 4.023291 GGAAATTCAAACCCAGGATGCTA 58.977 43.478 0.00 0.00 31.97 3.49
381 382 2.833943 GGAAATTCAAACCCAGGATGCT 59.166 45.455 0.00 0.00 31.97 3.79
382 383 2.833943 AGGAAATTCAAACCCAGGATGC 59.166 45.455 0.00 0.00 31.97 3.91
383 384 5.011943 TCAAAGGAAATTCAAACCCAGGATG 59.988 40.000 0.00 0.00 0.00 3.51
384 385 5.012046 GTCAAAGGAAATTCAAACCCAGGAT 59.988 40.000 0.00 0.00 0.00 3.24
385 386 4.343814 GTCAAAGGAAATTCAAACCCAGGA 59.656 41.667 0.00 0.00 0.00 3.86
386 387 4.100808 TGTCAAAGGAAATTCAAACCCAGG 59.899 41.667 0.00 0.00 0.00 4.45
387 388 5.049828 GTGTCAAAGGAAATTCAAACCCAG 58.950 41.667 0.00 0.00 0.00 4.45
388 389 4.467795 TGTGTCAAAGGAAATTCAAACCCA 59.532 37.500 0.00 0.00 0.00 4.51
389 390 5.017294 TGTGTCAAAGGAAATTCAAACCC 57.983 39.130 0.00 0.00 0.00 4.11
390 391 5.049828 CCTGTGTCAAAGGAAATTCAAACC 58.950 41.667 2.38 0.00 36.91 3.27
391 392 5.660460 ACCTGTGTCAAAGGAAATTCAAAC 58.340 37.500 16.58 0.00 38.27 2.93
392 393 5.930837 ACCTGTGTCAAAGGAAATTCAAA 57.069 34.783 16.58 0.00 38.27 2.69
393 394 5.930837 AACCTGTGTCAAAGGAAATTCAA 57.069 34.783 16.58 0.00 38.27 2.69
394 395 7.595819 AATAACCTGTGTCAAAGGAAATTCA 57.404 32.000 16.58 0.00 38.27 2.57
395 396 8.887036 AAAATAACCTGTGTCAAAGGAAATTC 57.113 30.769 16.58 0.00 38.27 2.17
396 397 9.325198 GAAAAATAACCTGTGTCAAAGGAAATT 57.675 29.630 16.58 11.09 38.27 1.82
397 398 8.704668 AGAAAAATAACCTGTGTCAAAGGAAAT 58.295 29.630 16.58 5.66 38.27 2.17
398 399 8.073467 AGAAAAATAACCTGTGTCAAAGGAAA 57.927 30.769 16.58 3.42 38.27 3.13
399 400 7.654022 AGAAAAATAACCTGTGTCAAAGGAA 57.346 32.000 16.58 3.79 38.27 3.36
400 401 8.934023 ATAGAAAAATAACCTGTGTCAAAGGA 57.066 30.769 16.58 0.00 38.27 3.36
401 402 9.981114 AAATAGAAAAATAACCTGTGTCAAAGG 57.019 29.630 7.60 7.60 40.93 3.11
429 430 5.694327 TGGTTGAACCAGTGTCACACACA 62.694 47.826 14.05 0.00 45.14 3.72
430 431 3.196473 TGGTTGAACCAGTGTCACACAC 61.196 50.000 14.05 4.87 44.79 3.82
431 432 1.003696 TGGTTGAACCAGTGTCACACA 59.996 47.619 14.05 0.00 44.79 3.72
432 433 1.745232 TGGTTGAACCAGTGTCACAC 58.255 50.000 14.05 0.00 44.79 3.82
442 443 4.520111 AGGTATAAAAACGGTGGTTGAACC 59.480 41.667 7.57 7.57 39.22 3.62
443 444 5.335113 GGAGGTATAAAAACGGTGGTTGAAC 60.335 44.000 0.00 0.00 36.25 3.18
444 445 4.761227 GGAGGTATAAAAACGGTGGTTGAA 59.239 41.667 0.00 0.00 36.25 2.69
445 446 4.041938 AGGAGGTATAAAAACGGTGGTTGA 59.958 41.667 0.00 0.00 36.25 3.18
446 447 4.155280 CAGGAGGTATAAAAACGGTGGTTG 59.845 45.833 0.00 0.00 36.25 3.77
447 448 4.202493 ACAGGAGGTATAAAAACGGTGGTT 60.202 41.667 0.00 0.00 38.22 3.67
448 449 3.328637 ACAGGAGGTATAAAAACGGTGGT 59.671 43.478 0.00 0.00 0.00 4.16
449 450 3.946606 ACAGGAGGTATAAAAACGGTGG 58.053 45.455 0.00 0.00 0.00 4.61
450 451 4.998672 TGAACAGGAGGTATAAAAACGGTG 59.001 41.667 0.00 0.00 0.00 4.94
451 452 5.231702 TGAACAGGAGGTATAAAAACGGT 57.768 39.130 0.00 0.00 0.00 4.83
452 453 5.448632 GCATGAACAGGAGGTATAAAAACGG 60.449 44.000 0.00 0.00 0.00 4.44
453 454 5.123186 TGCATGAACAGGAGGTATAAAAACG 59.877 40.000 0.00 0.00 0.00 3.60
454 455 6.509418 TGCATGAACAGGAGGTATAAAAAC 57.491 37.500 0.00 0.00 0.00 2.43
455 456 7.531857 TTTGCATGAACAGGAGGTATAAAAA 57.468 32.000 0.00 0.00 0.00 1.94
456 457 7.531857 TTTTGCATGAACAGGAGGTATAAAA 57.468 32.000 0.00 0.00 0.00 1.52
457 458 7.375053 GTTTTTGCATGAACAGGAGGTATAAA 58.625 34.615 0.00 0.00 0.00 1.40
458 459 6.071616 GGTTTTTGCATGAACAGGAGGTATAA 60.072 38.462 12.88 0.00 0.00 0.98
459 460 5.417580 GGTTTTTGCATGAACAGGAGGTATA 59.582 40.000 12.88 0.00 0.00 1.47
460 461 4.220602 GGTTTTTGCATGAACAGGAGGTAT 59.779 41.667 12.88 0.00 0.00 2.73
461 462 3.572255 GGTTTTTGCATGAACAGGAGGTA 59.428 43.478 12.88 0.00 0.00 3.08
462 463 2.365293 GGTTTTTGCATGAACAGGAGGT 59.635 45.455 12.88 0.00 0.00 3.85
463 464 2.607771 CGGTTTTTGCATGAACAGGAGG 60.608 50.000 12.88 0.00 0.00 4.30
464 465 2.664916 CGGTTTTTGCATGAACAGGAG 58.335 47.619 12.88 0.97 0.00 3.69
465 466 1.269517 GCGGTTTTTGCATGAACAGGA 60.270 47.619 12.88 0.00 0.00 3.86
466 467 1.139163 GCGGTTTTTGCATGAACAGG 58.861 50.000 12.88 6.77 0.00 4.00
467 468 0.777631 CGCGGTTTTTGCATGAACAG 59.222 50.000 0.00 10.41 0.00 3.16
468 469 0.101399 ACGCGGTTTTTGCATGAACA 59.899 45.000 12.47 0.00 0.00 3.18
469 470 0.775861 GACGCGGTTTTTGCATGAAC 59.224 50.000 12.47 4.58 0.00 3.18
470 471 0.658829 CGACGCGGTTTTTGCATGAA 60.659 50.000 12.47 0.00 0.00 2.57
471 472 1.082431 CGACGCGGTTTTTGCATGA 60.082 52.632 12.47 0.00 0.00 3.07
472 473 2.080062 CCGACGCGGTTTTTGCATG 61.080 57.895 12.47 0.00 42.73 4.06
473 474 2.254051 CCGACGCGGTTTTTGCAT 59.746 55.556 12.47 0.00 42.73 3.96
474 475 3.955101 CCCGACGCGGTTTTTGCA 61.955 61.111 12.47 0.00 46.80 4.08
475 476 4.693525 CCCCGACGCGGTTTTTGC 62.694 66.667 12.47 0.00 46.80 3.68
476 477 2.452366 CTTCCCCGACGCGGTTTTTG 62.452 60.000 12.47 0.00 46.80 2.44
477 478 2.203181 TTCCCCGACGCGGTTTTT 60.203 55.556 12.47 0.00 46.80 1.94
478 479 2.459202 ATCTTCCCCGACGCGGTTTT 62.459 55.000 12.47 0.00 46.80 2.43
479 480 2.951101 ATCTTCCCCGACGCGGTTT 61.951 57.895 12.47 0.00 46.80 3.27
480 481 3.387947 ATCTTCCCCGACGCGGTT 61.388 61.111 12.47 0.00 46.80 4.44
481 482 4.143333 CATCTTCCCCGACGCGGT 62.143 66.667 12.47 0.00 46.80 5.68
523 525 1.594293 AACCAACTGCTGACCGTCG 60.594 57.895 0.00 0.00 0.00 5.12
583 635 6.293407 CGTGACACATTTTGTTATGAGAAGGT 60.293 38.462 6.37 0.00 39.17 3.50
856 1351 2.897972 GCGGGGTGAACGGATAGT 59.102 61.111 0.00 0.00 0.00 2.12
866 1361 0.248907 CGCTATATATCCGCGGGGTG 60.249 60.000 27.83 9.84 42.88 4.61
987 1489 7.987458 TCGAGCTCTTCCATTGATTAACTATTT 59.013 33.333 12.85 0.00 0.00 1.40
988 1490 7.439655 GTCGAGCTCTTCCATTGATTAACTATT 59.560 37.037 12.85 0.00 0.00 1.73
989 1491 6.926272 GTCGAGCTCTTCCATTGATTAACTAT 59.074 38.462 12.85 0.00 0.00 2.12
1056 1558 4.429212 TGGTCATCGTCGGCGTGG 62.429 66.667 10.18 2.56 39.49 4.94
1216 1739 4.162690 GCCGCCGTCCTTCTCCAT 62.163 66.667 0.00 0.00 0.00 3.41
1234 1757 3.113745 CACCATGATCTTGCCGCC 58.886 61.111 3.07 0.00 0.00 6.13
1235 1758 2.410469 GCACCATGATCTTGCCGC 59.590 61.111 3.07 4.29 0.00 6.53
1236 1759 3.113745 GGCACCATGATCTTGCCG 58.886 61.111 10.58 2.89 46.11 5.69
1471 2090 4.295051 GTTGAGCGCACAAGGAAATTTAA 58.705 39.130 20.75 0.00 0.00 1.52
1544 2181 6.366332 GGTGCTAATCTCATTAACCGATACTG 59.634 42.308 0.00 0.00 0.00 2.74
1564 2201 3.898482 AGTAGGTTCAAAACTTGGTGCT 58.102 40.909 0.00 0.00 0.00 4.40
1576 2213 2.875933 CACGGCAAGAAAAGTAGGTTCA 59.124 45.455 0.00 0.00 0.00 3.18
1587 2233 2.293122 CTGGATTTTCACACGGCAAGAA 59.707 45.455 0.00 0.00 0.00 2.52
1605 2251 1.726791 CTTCGTTTGACCGATGACTGG 59.273 52.381 0.00 0.00 36.62 4.00
1663 2313 0.038892 GTAAGAACGTGCGTGGAGGA 60.039 55.000 0.00 0.00 0.00 3.71
1668 2318 2.658285 AGTACAGTAAGAACGTGCGTG 58.342 47.619 0.00 0.00 0.00 5.34
1684 2334 5.294356 TGTGCGGATTTGGATGTATAGTAC 58.706 41.667 0.00 0.00 0.00 2.73
1685 2335 5.538849 TGTGCGGATTTGGATGTATAGTA 57.461 39.130 0.00 0.00 0.00 1.82
1686 2336 4.415881 TGTGCGGATTTGGATGTATAGT 57.584 40.909 0.00 0.00 0.00 2.12
1687 2337 4.574421 TGTTGTGCGGATTTGGATGTATAG 59.426 41.667 0.00 0.00 0.00 1.31
1688 2338 4.518249 TGTTGTGCGGATTTGGATGTATA 58.482 39.130 0.00 0.00 0.00 1.47
1689 2339 3.351740 TGTTGTGCGGATTTGGATGTAT 58.648 40.909 0.00 0.00 0.00 2.29
1690 2340 2.784347 TGTTGTGCGGATTTGGATGTA 58.216 42.857 0.00 0.00 0.00 2.29
1695 2345 4.201871 ACGTATATTGTTGTGCGGATTTGG 60.202 41.667 0.00 0.00 0.00 3.28
1697 2347 5.006941 GGTACGTATATTGTTGTGCGGATTT 59.993 40.000 0.00 0.00 0.00 2.17
1702 2352 4.843879 TTGGTACGTATATTGTTGTGCG 57.156 40.909 0.00 0.00 0.00 5.34
1729 2379 3.061403 CGGAGAAAATCGTGTACGTATGC 60.061 47.826 0.00 0.00 40.80 3.14
1732 2382 3.829886 ACGGAGAAAATCGTGTACGTA 57.170 42.857 4.20 0.00 38.25 3.57
1733 2383 2.712057 ACGGAGAAAATCGTGTACGT 57.288 45.000 4.20 0.00 38.25 3.57
1961 2617 1.294659 GAAGGAGAAGCTGGCGTGTG 61.295 60.000 0.00 0.00 0.00 3.82
1978 2634 1.476833 GGTGTGCTGTGGAAGGAAGAA 60.477 52.381 0.00 0.00 0.00 2.52
2087 2755 1.289380 GACGTCGGCTTCTTGGAGT 59.711 57.895 0.00 0.00 0.00 3.85
2118 2786 2.280592 GCGGTGGTCGGAGTTGTT 60.281 61.111 0.00 0.00 39.69 2.83
2161 2829 0.167470 GTCTCCGTCGACGTTGATGA 59.833 55.000 33.49 22.30 37.74 2.92
2164 2832 0.109919 CATGTCTCCGTCGACGTTGA 60.110 55.000 33.49 26.56 36.71 3.18
2246 2914 3.681835 GACGTGGTCCAGGAGCGT 61.682 66.667 18.37 11.61 38.55 5.07
2300 2968 3.109547 GTGCATCGAACGTCGCCA 61.110 61.111 0.00 0.00 40.21 5.69
2309 2977 3.109547 GCGTCGTTGGTGCATCGA 61.110 61.111 0.00 0.00 33.98 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.