>input_sequence_78993
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATGGAAGAGCTCGACGAGT
TCGAGGTGCTCTGGCCGGAGTACTACGCCGGCCACGCCCACGCCGACGATGACCACAAGCCACTGC--------------
-CGAGCGTGCAGAGCCCGGCCACGTCGTGGCAGCGGCGCGCGGCAGGGTCTCGGCCGGTGGACGTTCCC------CCCAG
CAGGGCCGCCGTGCTGTTGCTACGGTGGAAAGACGGTACTGATCATCAAGACGACTTGATGGAGAAGGACGGCGGCGGCG
GCAAGATCATGGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTGTCCGACGGGGAGGCCGCCGCGGCGTACACGCTG
CTGCGGTCGGGGGTGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGG
CTTCATCGAAGGATGACACGTACT-----------AGGTCGTCCTATGGTTTGGGGCAC---------------------
----------------------------------------------------------------AAACACGTGCATAAAT
TTCTCAAAATTAAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>chr1B_1_TraesCS1B01G365100
TTGTGTATTAGTGTAATACTCCCTCCGTTCCTTGATATAAGGTGTATAGATTTTTGAGAAAAAAACCTGAAATATAAAGT
GTATTATGTTGCACCACTCGTTTGGATAATTTTTTCAGGGATTTGATTACATTTTCTTATATTAGGCAATCTCCTATATT
TTCTCATGCCAATTAGTCAGGTGTAATATCGCCCAAAACTTGTGAAATTTTTTCTTCACTTGCGTTCTTTAATTTCCGTG
CCAAAAATTATACATCCTATATTGAGGAATGGAGGGAGTACTAAATAGATGTAAAATACAATCATTTACATAAAATTGAA
AAGAGAGTTGGCCAGTCAAGATGGTTATTGGGTCAAAGGTGCAACTTACGCACCTATATCTAGCATCCTGGGTTTGAATT
TCCTTTGACACAGGTTATTTTTCTATTTTTGTGTGTGACACTGGTTCAACCACCGTTTTTATACCTCCTGTTCATGCAAA
AACCGCGTCGGGGAAGATGAAGTAAGGGGCGAAAGGA-TAAATCCGACGGTCAGCAGTTGGTTGATCTGA----------
-----------------------CGGACCGCGCG-----------------CGACCGGCCGGCGCCTAGCGCGCACCTTC
TCATAACAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AATGTGTCACGTCCTAGCCAACGCATGC
ACATACGCGCGGGTGCCCAGTGACGCCGCGAACACGGCATGGATGCACGTTGCGTGCCCCAGAGGGAGAAGCGCGTGTGT
GATCCCGGCGCCGCGTCCGGAGCCCGCGGCGGGACGGCGCCAACGGGATCCACACCTCTCCCCCACCGTCTCCATACCAC
CAGACGTGCGGGCTCTGTCGAGCGAGCGCCCGGCCGCCGTCGCGATCGACCAGACGCGGTGGGACGGAATACTATCCGTT
CACCCCGCGGATATATAGCGCCGCGTCTCGAGCACTGCTCCGTCGCAGCTCTGGGCACGCCTCCTCCTGGCTCTCGCCAG
TGCCAGCCG-------CCACCTCGTCCGATCCTACTTTGGTCACAGTTAAATAGTTAATCAATGGAAGAGCTCGACGAGT
TCGAGGTGCTCTGGCCGGAGTACTACGCCGGCCACGCCCACGCCGACGATGACCACAAGCCACTGC--------------
-CGAGCGTGCAGAGCCCGGCCACGTCGTGGCAGCGGCGCGCGGCAGGGTCTCGGCCGGTGGACGTTCCC------CCCAG
CAGGGCCGCCGTGCTGTTGCTACGGTGGAAAGACGGTACTGATCATCAAGACGACTTGATGGAGAAGGACGGCGGCGGCG
GCAAGATCATGGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTGTCCGACGGGGAGGCCGCCGCGGCGTACACGCTG
CTGCGGTCGGGGGTGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGG
CTTCATCGAAGGATGACACGTACT-----------AGGTCGTCCTATGGTTTGGGGCAC---------------------
----------------------------------------------------------------AAACACGTGCATAAAT
TTCTCAAAATTAAATTTCCTTGTGCGCTCAACGAATGTTATCAGAGTGCCC---------AAAAAACTTGTTGC------
---TAGTACTACCAGTTTGTCAGTATCGGTTAATGAGATTAGCACCAAGTTTTGAAC---------CTACTTTTCTTGCC
GTGTGAAAATCCAGTCATC----GGTCAAACGAAGCAAGTTTACATGGGAGAGTTCCACACTAAAGCTCATCTCCTCCAC
GCACGTTCTTACTGTACTATACATCCAAATCCGCACAACAATATACGTACCAATACGTGCATACGTACACGATTTTCTCC
GTGGCTCGGAGGGCTAGAGCGAGCGTGCACATCTGCATCAGCCGGCCCGGCGGTGCACGGTCCACGTGGCAGCCGAGGAT
AGGGTGCACCGCACTCCAACTCAACCCCTTCCTTCACGGCCACAGCCACAGC------TAGCAAAGTTTGTCCTAACCCG
CCACTACTCCTCCGATCCAGTTGCCAACTCCCCAAGGAAGTCTGCTTGCTCACCAACACACGCCAGCTTCTCCTTCT---
------TCCTTCCACAGCACACCTACCTCCGCTCGCTATATATCCCCCTCGCCATGGCAGCCCCAGCCCTTGCCTTCCCG
GACACACGGCCGGGGAGGCCATGG---ATCAGGAACTCCAAGAAGCCGACGTCCTCTGGCCACAGAACAACTCCGACCAC
CGCCGCGACGGCGGCCACGACGACAGCGTCATCAACGTCGACGGAGACATGGCAAAGCTATCCTCGCCGGAGCTGTCTGC
CCCGGTCCTCGTGCCTCACCGGAAGCGGCGGTCACGCTCCTGGACCACGTCGGACGGGAGCGGCAGCGGCAACGACGACT
GCAGCGATGGCGACGTTCGATGCACCAACGACGCAAAGAGGAACGTGCCGCCGCACGTCCTGGCTGAGCGACGCCGGAGG
CTCGCCGGAAGGTCGACGGCGGCCTACTCCATGTGCAGCGGGAAAGGGAGGACGCTCAAAGGGCGGGACCTCCGCAACAT
CAGGAACCTCGTCCTCAGGATGA
>chr1D_484
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CGCGTCGGGGAAGATGAAGTAAGGGGCGAAAGGA-TAAATCAGACGGTCAGCAGTTGGTTGATCTGA----------
-----------------------CGCGCGCGATCGGCCTGAAATATTCGGTCGGCCGACCGGCACCTAGCGCGCGCCTTC
TCATAACAACTAGCAAGATGCCCGCACGGAACACGAAGATGCATTTTTTTACAAAACACCTGTTGTGATTGACTCATGCG
GGAGTAATCCCATGTGTAAAAACTAATGATATCTTGAGAAAGATGAGAGATAAGGTGAGGAGGAGTGGGACGTGGTGGTG
ATTGGTGGTTGGACTGAGCGGAGGCATGGGATGGACGACACCGGCAGCGGCCATCTTGCCAGATTGTTCCAGAGGCTTCC
TTTTTTAATTGCTCAACAATGAGATTGTGTGAGATAAGGATGAACGAAGGAATGCCTTATCTGCAAATGTGGAAAGAGGT
GCGGGTATGTTTTTTATAAAATTAACATAGTTTGCTTTCTATCCGTCAGATATAGATCGGACGGTCTATATTGCAAGCTA
GCTGGCACACCATCATCATCAACTCGCTTTGTTATAAGAGTAGAGACAGAGAAATGTGTCACGTC--AGCCAACGCATGC
ACATACGCGCGGGTGCTCAGTGACGCCCCGAACACGGCATGGATGCACGTTGCGTACCCGAGAGGGAAAAGCGCGTGTGT
GATCCCGGCGCCGCGTCCGGAGCCCGCGGCGGGACGGCGCCAACGGGATCCACACCTCTCCCCCACCGTCTTCGTTCCAC
CAGGCGTGTGGACTTCGTCGAGCGAGCGCCCGGTCGCCGTCGCGATCGATCAGACGCGCGCGGTGGAATGGAA-------
-------CGGATATATAGCGCCGATTCTCGGGCACTGCTCCATCGCAGCTCTGGGCACGCCTCCTCCTGGCTCTCGCCAG
TGCCAGCCGCCACCCACCACCTCGTCCGATCCTACTGTGGACTGTGGTGG-TAGTTAATCAATGGAAGAGCTCGACGAGT
TCGAGGTGCTCTGGCCGGAGTACTGCGCCGGCCTCGCGCACGCCGACGATGACCAGTACAAGACACCGGCGGCGGCAT--
-CGAGCGTGCAGAGCACGGCCACGTCGTGGCAGCGGCGCGCGGCACGGTCTCGGCCGGTGGACGTTCCTCCA------AG
CAGGGCCGCCGTGCTGTTGCTACGGTGGAAAGACGGTAATACCG---AAGATGACTCAGTGGAGAAGGACGGCGGG---G
GCAAGATCATCGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTGTCCGACGGGGAGGCCGCCGCGGCGTACACGCTG
CTGCGGTCGGGGGCGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGG
CTTCATCGAAGGATGACACGTTGACACGTAGTACCAGGTCGTCCTATGGTTTGGGGCAC---------------------
----------------------------------------------------------------AAACACGTGCATAAAT
TTCTCAAAACTAAATTTCCTTGTGCGCTCAACGAATGTTATCAGAGTACCC---------AGAAAACGTGTTGCTACTTG
CTATAGTACTACCAGTTTGTTAGTATCGGTTAATGAGAATGGCACCAAGTTTCGAAC---------CTACTTGTCTTGCC
GTGTGAAAAATCAGTCATC----GGTCAAACGAAGCAAGTTTACATGGGAGAGTTCCACACTAAAGCTCATC-CCTCTAC
GCACGTTCTTACT-------ACATTCCAATGAGCACAACAA---------------------------------TAGTCC
GTGGCTCGTAGGGCTGGAGCGAGCGTGCACATCTGCATCAGCCGGCCCGGCGGTGCACGGTCCACGTGGCAGCCGAGGAT
AGGGTGCACCGCACTCCAACTCAACCCCTTCCTTCACGGCCACAGCCACAGCCACAGCTAGCAAAGTTTGTCCTAACCCG
CCACTACTCCTCCGATCCAGTTGCCAACTCCCCAAGGAAGTCTGCTTGCTCACCAAGACACGCCAGCTTCTCCCTCT---
------TCCGTCCACAGCACACCTACCTCCGCTCGCTATATATCCCGCTCGCCATGGCAGCCCCAGCCCTTGCCTTCCCG
GACACACGGCCGGGGAGGCCATGGATCATCAGGAGCTCCAAGAAGCCGACGTCCTCTGGCCACAACACAACTCCGACCAC
CGCCGTGACGGCGCCGACGGCGACGACGGCAGCAACGTCGACGGAGACATGGCAAAGCTATCCTCGCCGGAGCTGTCTGC
CCCGGTCCTCGTGCCTCGCCGGAAGCGGCGGTCTCGCTCCTGGTCGACGTCCGACGGGAGCGGCAGCGGCAACGACGACT
GCAGCGACGGCGATGTCCGATGCACCGACGACGCAAAGAGGAACGTGCCGCCGCACGTCCTGGCTGAACGGCGGCGGAGG
CTCGCCGGAAGGTCGACGGCGGCCTACTCCATGTGCACCGGCAAAGGGAGGACGCTCAAAGGGCGGGACCTTCGCAACAT
CAGGAACCTCGTCCTCAGGATGA
>chr1A_484
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---CGCGTCGGGGAAGATGAAGTAAGGGGCGAAAGGAATAAATCAGACGGTCAGCATTTGGTTGATCTTTGCTAAAAAAA
AGCAGTTGGTTGATCTGACGGATCGCGCGCGACCGGCCTGAAATATTCGGCCGGCCAGCCGGCGCCTAGCGCGGGCCTTC
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATAGCAAAACATGTCACGTCCTAGCCAACGCATGC
ACATACGCGCGGGTGCTGA-TGACGCCGCGAGCACGGCATGGATGCACGTTGCGTGCCCCAGAGGGAGAAGCGCGTGTGT
GATCCCGGCGCCGCGTCCGGAGCCCGCGGCGGGACGGCGCCAACGGGATCCACACCTCTC-CCCACCGCCTTCATACCAC
CAGACGTGCGGACTCCGTCGAGCGAGCGCCCGGCCGCCGTCGCGATCGACCAGACGCGGTGGGACGGAATGCCATCCGTT
TACCCCGCTGATATATAGCGCCGCGTCTCGAGCACTGCTCCATCGCAGCTCTGGGCACGCCTCCTCCCGGCTCTCGCCAG
TGCCAGCCG-------CCACCCCGTCCGATCCTACTGTGGTGGCG--------GTTAATCAATGGAAGAGCTCGACGAGT
TCGAGGTGCTCTGGCCGGAGTACTACGTGGGCCACGCTCACGCCGACGATGACCAGTACAAGACGCCGGCGCCGGCGTCG
GCGAGCGTGCAGAGCCCGGCCACGTCGTGGCAGCGGCGCGCGGCACGGTCTCGGCCGGTGGACGTTCCTCCCACTCCCAG
CAGGGCCGCCGTGCTGTTGCTACGGTGGAAAGACGGCACTGATCGTCAAGACGACTTGGCGGAGAAGGACGGCGGC---G
GCAAGATCGTCGTGCCGCCGCACCTGCTGGTCTCCGGCAGGCGGCTCTCCGACGGGGAGGCCGCCGCGGCGTACACGCTG
CTGCGGTCGGGGGCGGCAAGGCACGGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCCGTGCTGCGGATGACCGG
CTTTATCGAAGGATGACACGTCCT-----------ATGTTTGGGGCTACCACTTCAATTTGTAGATCAGAAATGGTCAAA
TGGATTTGAACCGGTCTGTACGTGGCATCAATCTAGTCTATCTATCTAGTAATTTAGTACGCGTAAGCACGTGCATAAAT
TCCTCGAAAATAATCTTATGCGTGCGTTCAATGAATATGTTATGAAAGTGCAAAAGAAAAAAAAAACTTGTTGC------
---TATCG------------------------ATGGGATTTGCACCAAGTTCCGAACCAAGGTATACTACTTATCTTGCC
GTGTGAGAATTCTGTCAAATATTGGTCAAACGAAGCAAGTTTACAGAGGAGAGAATTCCGTCATTGG-------------
-----------------------------TCAGTAGGACAATACGCGTGCAAATACGTACA--CGTACACGACTTACTCC
GAGGCTCGGAGGGCTAGAGCGAGCTTGCAC-----------------------------GTCCACGTGGCAGCCGAGGAT
AGGGTGCACCGCACTCCAACTCAACCCCTTCCTTCG------CAGCCACAGCCACAGCTAGCAAAGTTTGTCCTAACGCG
CCACTACTCCTCCGATCCAGTTGCCAACTCCCCAAGGAAGTCTGCTTGCTCACCAAGACACGCCAGCTTCTCCCTCTCCT
TCCCCTTCCTTCCACAGCACACCTACCTCCGCTCGCTATATATCCCCCTCGCCATGGCAGCCCTAGCCCTTGCCTTCCCG
GACACACGGCCGGGGAGGCCATGG---ATCAGGAGCTCCAAGAAGCCGACGTCCTCTGGCCTCAGCACAACTCCGACCAC
CGCCG---------CGACGGCGACGACGGCAGCAACGTCGACGGGGACATAACAAAGCTATCCTCGCCGGAGCTGTCTGC
CCCGGTCCCCGTGCCTCACCGGAAGCGGCGGTCTCGCTCCTGGTCGACGTCCGACGGGAGCGGCAGTGGCAACGACGACT
GCAGCGACGGCGACGTCCGATGCACCAACGACGCAAAGAGGAACGTGCCGCCGCACGTCCTGGCCGAGCGGCGGCGGAGG
CTCGCCGGGAGGTCGACGGCGGCCTACTCCATGTGCAGCGGGAAAGGGAGGACGCTCAAAGGGCGGGACCTCCGCAACAT
CAGGAACCTCGTCCTCAGGTTGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-----------------------------------------S-----------------------------------
-------------------------SS-SSSS-S-------------------S--------------------S-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-----------------------------------------------------------------------S--------
-----------S---S------------------------------------------------------S-S-------
S----------------------------------------S--------------------------------------
------------------------------------S-----S-S-S-SSS-----------------------------
-------------------------------------S-----------------SS-SSSSSS----------------
---------------------------------------------S----------------------S-----------
--------------------------------------------S-------------S-----------------SSS-
----------S---------------------------------------------------------------------
-------------S------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------S-------------------S-----------S-------------------S-------
----------S-------------------------------------------------------------S----S--
-------------SSSSSSS----S-S----S-----------SS---S-S-------S--SS---------S--S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S----------------S------
--------------------------------------------------------------------------------
----------------------------------S------------------------------S--------------
-----S-------S-S---S----SS--S--S------------------------------------------------
---------------------------------S---------S-S-----S----------------------------
-------S--------S-----------------------------------------------------S--S------
--------------------------------------------------------------------------------
-----------------------
>forward_457
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACACTGGTTCAACCACCGTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_2313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCCTCCAC
GCACGTTCTTAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
