Multiple sequence alignment - TraesCS1B01G351500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G351500 chr1B 100.000 2609 0 0 1 2609 582092696 582090088 0 4819
1 TraesCS1B01G351500 chr1D 89.883 2056 102 43 33 2049 430976833 430974845 0 2547
2 TraesCS1B01G351500 chr1A 88.862 2056 129 41 33 2058 529244202 529242217 0 2436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G351500 chr1B 582090088 582092696 2608 True 4819 4819 100.000 1 2609 1 chr1B.!!$R1 2608
1 TraesCS1B01G351500 chr1D 430974845 430976833 1988 True 2547 2547 89.883 33 2049 1 chr1D.!!$R1 2016
2 TraesCS1B01G351500 chr1A 529242217 529244202 1985 True 2436 2436 88.862 33 2058 1 chr1A.!!$R1 2025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 400 0.255033 TACAGCTAGCTCCTGACGGA 59.745 55.0 16.15 0.0 37.82 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2130 2216 0.036306 TGTTCGAAAGGAGGGGCTTC 59.964 55.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.996976 GAGAGGTCTCGCAGCAAA 57.003 55.556 0.00 0.00 32.78 3.68
23 24 2.450619 GAGAGGTCTCGCAGCAAAC 58.549 57.895 0.00 0.00 32.78 2.93
24 25 1.347817 GAGAGGTCTCGCAGCAAACG 61.348 60.000 0.00 0.00 32.78 3.60
25 26 2.357517 AGGTCTCGCAGCAAACGG 60.358 61.111 0.00 0.00 0.00 4.44
26 27 2.357034 GGTCTCGCAGCAAACGGA 60.357 61.111 0.00 0.00 0.00 4.69
27 28 1.959226 GGTCTCGCAGCAAACGGAA 60.959 57.895 0.00 0.00 0.00 4.30
28 29 1.204312 GTCTCGCAGCAAACGGAAC 59.796 57.895 0.00 0.00 0.00 3.62
46 47 0.629596 ACGGGGAGGAGACTATGACA 59.370 55.000 0.00 0.00 44.43 3.58
56 57 4.013728 GGAGACTATGACACTCTGTGACT 58.986 47.826 4.61 0.00 36.96 3.41
69 70 0.603065 TGTGACTGTGAGTGATCCCG 59.397 55.000 0.00 0.00 0.00 5.14
70 71 0.888619 GTGACTGTGAGTGATCCCGA 59.111 55.000 0.00 0.00 0.00 5.14
71 72 1.135257 GTGACTGTGAGTGATCCCGAG 60.135 57.143 0.00 0.00 0.00 4.63
91 92 1.001633 GGAGAGTTTGTGTTAGGCGGA 59.998 52.381 0.00 0.00 0.00 5.54
207 209 2.287103 ACTTTTTCGTTCGACTGGCTTC 59.713 45.455 0.00 0.00 0.00 3.86
230 238 4.615223 CGGATTCTGTCGTTTCTCACACTA 60.615 45.833 0.00 0.00 0.00 2.74
231 239 5.227908 GGATTCTGTCGTTTCTCACACTAA 58.772 41.667 0.00 0.00 0.00 2.24
235 243 6.764877 TCTGTCGTTTCTCACACTAAAATC 57.235 37.500 0.00 0.00 0.00 2.17
318 327 6.238648 GCATTTGCGTAGTTATTTGACCCTAT 60.239 38.462 0.00 0.00 0.00 2.57
372 382 4.122337 TGTGAGACTGAAGGGTTAGGTA 57.878 45.455 0.00 0.00 0.00 3.08
390 400 0.255033 TACAGCTAGCTCCTGACGGA 59.745 55.000 16.15 0.00 37.82 4.69
391 401 0.612174 ACAGCTAGCTCCTGACGGAA 60.612 55.000 16.15 0.00 39.29 4.30
392 402 0.749649 CAGCTAGCTCCTGACGGAAT 59.250 55.000 16.15 0.00 39.29 3.01
393 403 1.036707 AGCTAGCTCCTGACGGAATC 58.963 55.000 12.68 0.00 39.29 2.52
394 404 1.036707 GCTAGCTCCTGACGGAATCT 58.963 55.000 7.70 0.00 39.29 2.40
395 405 2.158593 AGCTAGCTCCTGACGGAATCTA 60.159 50.000 12.68 0.00 39.29 1.98
396 406 2.623889 GCTAGCTCCTGACGGAATCTAA 59.376 50.000 7.70 0.00 39.29 2.10
397 407 3.551250 GCTAGCTCCTGACGGAATCTAAC 60.551 52.174 7.70 0.00 39.29 2.34
398 408 2.741145 AGCTCCTGACGGAATCTAACT 58.259 47.619 0.00 0.00 39.29 2.24
399 409 2.428890 AGCTCCTGACGGAATCTAACTG 59.571 50.000 0.00 0.00 39.29 3.16
400 410 2.815478 CTCCTGACGGAATCTAACTGC 58.185 52.381 0.00 0.00 39.29 4.40
401 411 2.166459 CTCCTGACGGAATCTAACTGCA 59.834 50.000 0.00 0.00 39.29 4.41
402 412 2.766263 TCCTGACGGAATCTAACTGCAT 59.234 45.455 0.00 0.00 36.03 3.96
403 413 3.958147 TCCTGACGGAATCTAACTGCATA 59.042 43.478 0.00 0.00 36.03 3.14
404 414 4.588951 TCCTGACGGAATCTAACTGCATAT 59.411 41.667 0.00 0.00 36.03 1.78
405 415 5.773176 TCCTGACGGAATCTAACTGCATATA 59.227 40.000 0.00 0.00 36.03 0.86
406 416 6.266786 TCCTGACGGAATCTAACTGCATATAA 59.733 38.462 0.00 0.00 36.03 0.98
407 417 6.587990 CCTGACGGAATCTAACTGCATATAAG 59.412 42.308 0.00 0.00 0.00 1.73
408 418 5.926542 TGACGGAATCTAACTGCATATAAGC 59.073 40.000 0.00 0.00 0.00 3.09
409 419 5.853936 ACGGAATCTAACTGCATATAAGCA 58.146 37.500 2.21 2.21 43.35 3.91
454 497 4.100084 TGAGCCGTGGCCATCCTG 62.100 66.667 9.72 0.00 43.17 3.86
455 498 4.864334 GAGCCGTGGCCATCCTGG 62.864 72.222 9.72 10.47 43.17 4.45
495 538 4.484872 GGGGCTCCCTAACCGCAC 62.485 72.222 4.74 0.00 41.34 5.34
504 547 1.677552 CTAACCGCACCCCTTGTCT 59.322 57.895 0.00 0.00 0.00 3.41
527 570 1.670811 GTTACCCGGTCAAGCATCATG 59.329 52.381 0.00 0.00 0.00 3.07
610 654 2.184533 ACCGTCACTCCATCACCAATA 58.815 47.619 0.00 0.00 0.00 1.90
710 757 3.818961 AAAATCGCTGTCACTGACATG 57.181 42.857 12.34 8.47 41.94 3.21
719 766 4.800993 GCTGTCACTGACATGTAGTATGAC 59.199 45.833 12.34 18.32 41.94 3.06
720 767 5.622233 GCTGTCACTGACATGTAGTATGACA 60.622 44.000 22.95 22.95 41.94 3.58
808 855 2.143122 CAACACAGACCAGCACGTATT 58.857 47.619 0.00 0.00 0.00 1.89
816 863 4.024302 CAGACCAGCACGTATTAGTCGATA 60.024 45.833 0.00 0.00 0.00 2.92
817 864 4.577693 AGACCAGCACGTATTAGTCGATAA 59.422 41.667 0.00 0.00 0.00 1.75
820 867 6.973843 ACCAGCACGTATTAGTCGATAATTA 58.026 36.000 0.00 0.00 35.63 1.40
825 872 8.975439 AGCACGTATTAGTCGATAATTAAAAGG 58.025 33.333 0.00 0.00 35.63 3.11
910 961 3.482110 CGCAGCTAACCAAATTTAATCGC 59.518 43.478 0.00 0.00 0.00 4.58
1029 1083 1.410517 CTGGCTGCTCTCGGAAATAGA 59.589 52.381 0.00 0.00 0.00 1.98
1031 1085 3.230976 TGGCTGCTCTCGGAAATAGATA 58.769 45.455 0.00 0.00 0.00 1.98
1593 1665 2.509336 CTGGTGCACCGTCGATCC 60.509 66.667 30.07 4.99 39.43 3.36
1839 1920 8.964476 TTTTTAGGCAAGATAGTATGAGGAAG 57.036 34.615 0.00 0.00 0.00 3.46
1840 1921 6.672266 TTAGGCAAGATAGTATGAGGAAGG 57.328 41.667 0.00 0.00 0.00 3.46
1841 1922 3.326297 AGGCAAGATAGTATGAGGAAGGC 59.674 47.826 0.00 0.00 0.00 4.35
1896 1977 3.146847 ACGAAGGGAATGTGGTCTTTTC 58.853 45.455 0.00 0.00 0.00 2.29
1899 1980 3.441500 AGGGAATGTGGTCTTTTCCTC 57.558 47.619 0.00 0.00 33.11 3.71
1905 1986 0.771755 GTGGTCTTTTCCTCCTGGGT 59.228 55.000 0.00 0.00 36.25 4.51
1949 2030 0.313672 TCAAAGCGCACCAAATCCAC 59.686 50.000 11.47 0.00 0.00 4.02
2010 2096 2.633639 TCGCGTCTCGATCGTTTTC 58.366 52.632 15.94 3.91 43.16 2.29
2064 2150 4.017092 GCAAGTTGCAGTGCCAAC 57.983 55.556 22.90 16.06 44.26 3.77
2068 2154 4.302154 GTTGCAGTGCCAACGAAC 57.698 55.556 13.72 6.07 36.16 3.95
2069 2155 1.727467 GTTGCAGTGCCAACGAACT 59.273 52.632 13.72 0.00 36.16 3.01
2070 2156 0.592247 GTTGCAGTGCCAACGAACTG 60.592 55.000 13.72 0.00 45.37 3.16
2072 2158 2.639286 CAGTGCCAACGAACTGCC 59.361 61.111 0.00 0.00 37.58 4.85
2073 2159 2.186160 CAGTGCCAACGAACTGCCA 61.186 57.895 0.00 0.00 37.58 4.92
2074 2160 1.893808 AGTGCCAACGAACTGCCAG 60.894 57.895 0.00 0.00 0.00 4.85
2075 2161 2.594303 TGCCAACGAACTGCCAGG 60.594 61.111 0.00 0.00 0.00 4.45
2076 2162 3.365265 GCCAACGAACTGCCAGGG 61.365 66.667 0.00 0.00 0.00 4.45
2077 2163 3.365265 CCAACGAACTGCCAGGGC 61.365 66.667 2.62 2.62 42.35 5.19
2087 2173 4.393693 GCCAGGGCATAGCTGATC 57.606 61.111 5.20 0.00 41.49 2.92
2088 2174 1.453235 GCCAGGGCATAGCTGATCA 59.547 57.895 5.20 0.00 41.49 2.92
2089 2175 0.888285 GCCAGGGCATAGCTGATCAC 60.888 60.000 5.20 0.00 41.49 3.06
2090 2176 0.763652 CCAGGGCATAGCTGATCACT 59.236 55.000 0.00 0.00 0.00 3.41
2091 2177 1.142465 CCAGGGCATAGCTGATCACTT 59.858 52.381 0.00 0.00 0.00 3.16
2092 2178 2.369860 CCAGGGCATAGCTGATCACTTA 59.630 50.000 0.00 0.00 0.00 2.24
2093 2179 3.556633 CCAGGGCATAGCTGATCACTTAG 60.557 52.174 0.00 0.00 0.00 2.18
2094 2180 2.636893 AGGGCATAGCTGATCACTTAGG 59.363 50.000 0.00 0.00 0.00 2.69
2095 2181 2.421619 GGCATAGCTGATCACTTAGGC 58.578 52.381 0.00 8.94 0.00 3.93
2096 2182 2.224378 GGCATAGCTGATCACTTAGGCA 60.224 50.000 15.91 1.48 0.00 4.75
2097 2183 3.558746 GGCATAGCTGATCACTTAGGCAT 60.559 47.826 15.91 3.27 0.00 4.40
2098 2184 3.436015 GCATAGCTGATCACTTAGGCATG 59.564 47.826 11.45 10.51 0.00 4.06
2099 2185 4.801914 GCATAGCTGATCACTTAGGCATGA 60.802 45.833 11.45 0.00 0.00 3.07
2100 2186 3.472283 AGCTGATCACTTAGGCATGAG 57.528 47.619 0.00 0.00 0.00 2.90
2101 2187 3.036819 AGCTGATCACTTAGGCATGAGA 58.963 45.455 0.00 0.00 0.00 3.27
2102 2188 3.453717 AGCTGATCACTTAGGCATGAGAA 59.546 43.478 0.00 0.00 0.00 2.87
2103 2189 3.559242 GCTGATCACTTAGGCATGAGAAC 59.441 47.826 0.00 0.00 0.00 3.01
2104 2190 4.682859 GCTGATCACTTAGGCATGAGAACT 60.683 45.833 0.00 0.00 0.00 3.01
2105 2191 4.763073 TGATCACTTAGGCATGAGAACTG 58.237 43.478 0.00 0.00 0.00 3.16
2106 2192 2.977914 TCACTTAGGCATGAGAACTGC 58.022 47.619 0.00 0.00 38.93 4.40
2107 2193 1.662629 CACTTAGGCATGAGAACTGCG 59.337 52.381 0.00 0.00 40.59 5.18
2108 2194 1.550524 ACTTAGGCATGAGAACTGCGA 59.449 47.619 0.00 0.00 40.59 5.10
2109 2195 2.200067 CTTAGGCATGAGAACTGCGAG 58.800 52.381 0.00 0.00 40.59 5.03
2110 2196 0.461548 TAGGCATGAGAACTGCGAGG 59.538 55.000 0.00 0.00 40.59 4.63
2111 2197 1.817099 GGCATGAGAACTGCGAGGG 60.817 63.158 0.00 0.00 40.59 4.30
2112 2198 1.078848 GCATGAGAACTGCGAGGGT 60.079 57.895 0.00 0.00 0.00 4.34
2113 2199 0.175760 GCATGAGAACTGCGAGGGTA 59.824 55.000 0.00 0.00 0.00 3.69
2114 2200 1.202580 GCATGAGAACTGCGAGGGTAT 60.203 52.381 0.00 0.00 0.00 2.73
2115 2201 2.035961 GCATGAGAACTGCGAGGGTATA 59.964 50.000 0.00 0.00 0.00 1.47
2116 2202 3.306364 GCATGAGAACTGCGAGGGTATAT 60.306 47.826 0.00 0.00 0.00 0.86
2117 2203 4.489810 CATGAGAACTGCGAGGGTATATC 58.510 47.826 0.00 0.00 0.00 1.63
2118 2204 3.833732 TGAGAACTGCGAGGGTATATCT 58.166 45.455 0.00 0.00 0.00 1.98
2119 2205 4.981812 TGAGAACTGCGAGGGTATATCTA 58.018 43.478 0.00 0.00 0.00 1.98
2120 2206 5.571285 TGAGAACTGCGAGGGTATATCTAT 58.429 41.667 0.00 0.00 0.00 1.98
2121 2207 6.718294 TGAGAACTGCGAGGGTATATCTATA 58.282 40.000 0.00 0.00 0.00 1.31
2122 2208 7.347252 TGAGAACTGCGAGGGTATATCTATAT 58.653 38.462 0.00 0.00 0.00 0.86
2123 2209 7.499563 TGAGAACTGCGAGGGTATATCTATATC 59.500 40.741 0.00 0.00 0.00 1.63
2124 2210 7.579105 AGAACTGCGAGGGTATATCTATATCT 58.421 38.462 0.00 0.00 0.00 1.98
2125 2211 8.056400 AGAACTGCGAGGGTATATCTATATCTT 58.944 37.037 0.00 0.00 0.00 2.40
2126 2212 7.811117 ACTGCGAGGGTATATCTATATCTTC 57.189 40.000 0.00 0.00 0.00 2.87
2127 2213 7.579105 ACTGCGAGGGTATATCTATATCTTCT 58.421 38.462 0.00 0.00 0.00 2.85
2128 2214 8.056400 ACTGCGAGGGTATATCTATATCTTCTT 58.944 37.037 0.00 0.00 0.00 2.52
2129 2215 8.226819 TGCGAGGGTATATCTATATCTTCTTG 57.773 38.462 0.00 0.00 0.00 3.02
2130 2216 7.285629 TGCGAGGGTATATCTATATCTTCTTGG 59.714 40.741 0.00 0.00 0.00 3.61
2131 2217 7.502895 GCGAGGGTATATCTATATCTTCTTGGA 59.497 40.741 0.00 0.00 0.00 3.53
2132 2218 9.409918 CGAGGGTATATCTATATCTTCTTGGAA 57.590 37.037 0.06 0.00 0.00 3.53
2134 2220 9.207868 AGGGTATATCTATATCTTCTTGGAAGC 57.792 37.037 2.74 0.00 0.00 3.86
2135 2221 8.425703 GGGTATATCTATATCTTCTTGGAAGCC 58.574 40.741 2.74 0.00 0.00 4.35
2136 2222 8.425703 GGTATATCTATATCTTCTTGGAAGCCC 58.574 40.741 2.74 0.00 0.00 5.19
2137 2223 5.770685 ATCTATATCTTCTTGGAAGCCCC 57.229 43.478 2.74 0.00 0.00 5.80
2138 2224 4.832492 TCTATATCTTCTTGGAAGCCCCT 58.168 43.478 2.74 0.00 35.38 4.79
2139 2225 4.841246 TCTATATCTTCTTGGAAGCCCCTC 59.159 45.833 2.74 0.00 35.38 4.30
2140 2226 0.922626 ATCTTCTTGGAAGCCCCTCC 59.077 55.000 2.74 0.00 35.38 4.30
2141 2227 0.178861 TCTTCTTGGAAGCCCCTCCT 60.179 55.000 2.74 0.00 36.35 3.69
2142 2228 0.701147 CTTCTTGGAAGCCCCTCCTT 59.299 55.000 0.00 0.00 36.35 3.36
2143 2229 1.076187 CTTCTTGGAAGCCCCTCCTTT 59.924 52.381 0.00 0.00 36.35 3.11
2144 2230 0.698818 TCTTGGAAGCCCCTCCTTTC 59.301 55.000 0.00 0.00 36.35 2.62
2145 2231 0.678048 CTTGGAAGCCCCTCCTTTCG 60.678 60.000 0.00 0.00 36.35 3.46
2146 2232 1.131303 TTGGAAGCCCCTCCTTTCGA 61.131 55.000 0.00 0.00 36.35 3.71
2147 2233 1.131303 TGGAAGCCCCTCCTTTCGAA 61.131 55.000 0.00 0.00 36.35 3.71
2148 2234 0.677098 GGAAGCCCCTCCTTTCGAAC 60.677 60.000 0.00 0.00 32.21 3.95
2149 2235 0.036306 GAAGCCCCTCCTTTCGAACA 59.964 55.000 0.00 0.00 0.00 3.18
2150 2236 0.250770 AAGCCCCTCCTTTCGAACAC 60.251 55.000 0.00 0.00 0.00 3.32
2151 2237 2.033194 GCCCCTCCTTTCGAACACG 61.033 63.158 0.00 0.00 0.00 4.49
2152 2238 1.370064 CCCCTCCTTTCGAACACGT 59.630 57.895 0.00 0.00 0.00 4.49
2153 2239 0.604578 CCCCTCCTTTCGAACACGTA 59.395 55.000 0.00 0.00 0.00 3.57
2154 2240 1.001181 CCCCTCCTTTCGAACACGTAA 59.999 52.381 0.00 0.00 0.00 3.18
2155 2241 2.548493 CCCCTCCTTTCGAACACGTAAA 60.548 50.000 0.00 0.00 0.00 2.01
2156 2242 3.332034 CCCTCCTTTCGAACACGTAAAT 58.668 45.455 0.00 0.00 0.00 1.40
2157 2243 4.497300 CCCTCCTTTCGAACACGTAAATA 58.503 43.478 0.00 0.00 0.00 1.40
2158 2244 4.931002 CCCTCCTTTCGAACACGTAAATAA 59.069 41.667 0.00 0.00 0.00 1.40
2159 2245 5.409214 CCCTCCTTTCGAACACGTAAATAAA 59.591 40.000 0.00 0.00 0.00 1.40
2160 2246 6.073112 CCCTCCTTTCGAACACGTAAATAAAA 60.073 38.462 0.00 0.00 0.00 1.52
2161 2247 6.793680 CCTCCTTTCGAACACGTAAATAAAAC 59.206 38.462 0.00 0.00 0.00 2.43
2162 2248 7.307573 CCTCCTTTCGAACACGTAAATAAAACT 60.308 37.037 0.00 0.00 0.00 2.66
2163 2249 7.918643 TCCTTTCGAACACGTAAATAAAACTT 58.081 30.769 0.00 0.00 0.00 2.66
2164 2250 9.039870 TCCTTTCGAACACGTAAATAAAACTTA 57.960 29.630 0.00 0.00 0.00 2.24
2165 2251 9.649024 CCTTTCGAACACGTAAATAAAACTTAA 57.351 29.630 0.00 0.00 0.00 1.85
2170 2256 9.853921 CGAACACGTAAATAAAACTTAAGAAGT 57.146 29.630 10.09 0.00 45.46 3.01
2186 2272 9.562226 ACTTAAGAAGTGTATATATATGGGGCT 57.438 33.333 10.09 0.00 41.01 5.19
2188 2274 7.439108 AAGAAGTGTATATATATGGGGCTCC 57.561 40.000 0.00 0.00 0.00 4.70
2189 2275 5.598830 AGAAGTGTATATATATGGGGCTCCG 59.401 44.000 0.00 0.00 35.24 4.63
2190 2276 3.641906 AGTGTATATATATGGGGCTCCGC 59.358 47.826 0.00 0.00 35.24 5.54
2191 2277 3.386726 GTGTATATATATGGGGCTCCGCA 59.613 47.826 8.14 8.14 42.90 5.69
2193 2279 3.777106 ATATATATGGGGCTCCGCATG 57.223 47.619 23.55 0.00 46.66 4.06
2194 2280 0.548031 ATATATGGGGCTCCGCATGG 59.452 55.000 23.55 0.00 46.66 3.66
2195 2281 2.196997 TATATGGGGCTCCGCATGGC 62.197 60.000 23.55 0.00 46.66 4.40
2200 2286 3.818787 GGCTCCGCATGGCTGTTG 61.819 66.667 0.00 0.00 34.14 3.33
2201 2287 3.818787 GCTCCGCATGGCTGTTGG 61.819 66.667 0.00 0.00 34.14 3.77
2202 2288 3.818787 CTCCGCATGGCTGTTGGC 61.819 66.667 0.00 0.00 40.90 4.52
2207 2293 3.672447 CATGGCTGTTGGCGCACA 61.672 61.111 10.83 4.81 42.94 4.57
2208 2294 3.673484 ATGGCTGTTGGCGCACAC 61.673 61.111 10.83 5.34 42.94 3.82
2210 2296 3.898509 GGCTGTTGGCGCACACAA 61.899 61.111 10.83 0.62 42.94 3.33
2211 2297 2.336088 GCTGTTGGCGCACACAAT 59.664 55.556 10.83 0.00 0.00 2.71
2212 2298 1.730547 GCTGTTGGCGCACACAATC 60.731 57.895 10.83 2.24 0.00 2.67
2213 2299 1.081242 CTGTTGGCGCACACAATCC 60.081 57.895 10.83 0.00 0.00 3.01
2214 2300 1.794151 CTGTTGGCGCACACAATCCA 61.794 55.000 10.83 0.00 0.00 3.41
2215 2301 1.177895 TGTTGGCGCACACAATCCAT 61.178 50.000 10.83 0.00 0.00 3.41
2216 2302 0.456653 GTTGGCGCACACAATCCATC 60.457 55.000 10.83 0.00 0.00 3.51
2217 2303 0.892814 TTGGCGCACACAATCCATCA 60.893 50.000 10.83 0.00 0.00 3.07
2218 2304 1.307355 TGGCGCACACAATCCATCAG 61.307 55.000 10.83 0.00 0.00 2.90
2219 2305 1.026182 GGCGCACACAATCCATCAGA 61.026 55.000 10.83 0.00 0.00 3.27
2220 2306 1.019673 GCGCACACAATCCATCAGAT 58.980 50.000 0.30 0.00 36.48 2.90
2221 2307 1.268386 GCGCACACAATCCATCAGATG 60.268 52.381 0.30 3.04 34.56 2.90
2222 2308 2.282407 CGCACACAATCCATCAGATGA 58.718 47.619 12.41 0.00 34.56 2.92
2223 2309 2.679336 CGCACACAATCCATCAGATGAA 59.321 45.455 12.41 0.00 34.56 2.57
2224 2310 3.242641 CGCACACAATCCATCAGATGAAG 60.243 47.826 12.41 0.00 34.56 3.02
2225 2311 3.943381 GCACACAATCCATCAGATGAAGA 59.057 43.478 12.41 1.89 34.56 2.87
2226 2312 4.035324 GCACACAATCCATCAGATGAAGAG 59.965 45.833 12.41 2.11 34.56 2.85
2227 2313 4.035324 CACACAATCCATCAGATGAAGAGC 59.965 45.833 12.41 0.00 34.56 4.09
2228 2314 4.196971 CACAATCCATCAGATGAAGAGCA 58.803 43.478 12.41 0.00 34.56 4.26
2229 2315 4.035324 CACAATCCATCAGATGAAGAGCAC 59.965 45.833 12.41 0.00 34.56 4.40
2230 2316 4.080469 ACAATCCATCAGATGAAGAGCACT 60.080 41.667 12.41 0.00 34.56 4.40
2231 2317 5.129980 ACAATCCATCAGATGAAGAGCACTA 59.870 40.000 12.41 0.00 34.56 2.74
2232 2318 6.183361 ACAATCCATCAGATGAAGAGCACTAT 60.183 38.462 12.41 0.00 34.56 2.12
2233 2319 5.883685 TCCATCAGATGAAGAGCACTATT 57.116 39.130 12.41 0.00 0.00 1.73
2234 2320 5.608449 TCCATCAGATGAAGAGCACTATTG 58.392 41.667 12.41 0.00 0.00 1.90
2235 2321 5.129980 TCCATCAGATGAAGAGCACTATTGT 59.870 40.000 12.41 0.00 0.00 2.71
2236 2322 6.324770 TCCATCAGATGAAGAGCACTATTGTA 59.675 38.462 12.41 0.00 0.00 2.41
2237 2323 6.423302 CCATCAGATGAAGAGCACTATTGTAC 59.577 42.308 12.41 0.00 0.00 2.90
2238 2324 6.530019 TCAGATGAAGAGCACTATTGTACA 57.470 37.500 0.00 0.00 0.00 2.90
2239 2325 6.935167 TCAGATGAAGAGCACTATTGTACAA 58.065 36.000 11.41 11.41 0.00 2.41
2240 2326 7.559486 TCAGATGAAGAGCACTATTGTACAAT 58.441 34.615 23.80 23.80 34.93 2.71
2241 2327 8.695456 TCAGATGAAGAGCACTATTGTACAATA 58.305 33.333 23.51 23.51 32.50 1.90
2242 2328 9.486497 CAGATGAAGAGCACTATTGTACAATAT 57.514 33.333 24.81 12.81 33.29 1.28
2246 2332 9.890629 TGAAGAGCACTATTGTACAATATTTCT 57.109 29.630 24.81 19.50 33.29 2.52
2249 2335 9.539825 AGAGCACTATTGTACAATATTTCTCTG 57.460 33.333 29.68 19.61 34.47 3.35
2250 2336 8.147642 AGCACTATTGTACAATATTTCTCTGC 57.852 34.615 24.81 21.13 33.29 4.26
2251 2337 7.770433 AGCACTATTGTACAATATTTCTCTGCA 59.230 33.333 24.81 4.77 33.29 4.41
2252 2338 8.562892 GCACTATTGTACAATATTTCTCTGCAT 58.437 33.333 24.81 2.19 33.29 3.96
2263 2349 8.975439 CAATATTTCTCTGCATATTTTCCAAGC 58.025 33.333 0.00 0.00 0.00 4.01
2264 2350 6.786967 ATTTCTCTGCATATTTTCCAAGCT 57.213 33.333 0.00 0.00 0.00 3.74
2265 2351 5.571784 TTCTCTGCATATTTTCCAAGCTG 57.428 39.130 0.00 0.00 0.00 4.24
2266 2352 3.949754 TCTCTGCATATTTTCCAAGCTGG 59.050 43.478 0.00 0.00 39.43 4.85
2267 2353 3.949754 CTCTGCATATTTTCCAAGCTGGA 59.050 43.478 0.00 0.00 46.61 3.86
2274 2360 4.728409 TCCAAGCTGGAGCACATG 57.272 55.556 0.65 0.00 42.67 3.21
2275 2361 1.001764 TCCAAGCTGGAGCACATGG 60.002 57.895 0.65 6.60 42.67 3.66
2276 2362 2.707849 CCAAGCTGGAGCACATGGC 61.708 63.158 0.65 0.00 40.96 4.40
2288 2374 1.884579 GCACATGGCAGATATCCAAGG 59.115 52.381 0.00 0.00 43.97 3.61
2289 2375 2.511659 CACATGGCAGATATCCAAGGG 58.488 52.381 0.00 0.00 37.13 3.95
2290 2376 1.202976 ACATGGCAGATATCCAAGGGC 60.203 52.381 0.00 0.30 37.13 5.19
2291 2377 1.151760 ATGGCAGATATCCAAGGGCA 58.848 50.000 11.20 11.20 37.13 5.36
2292 2378 1.151760 TGGCAGATATCCAAGGGCAT 58.848 50.000 0.00 0.00 0.00 4.40
2293 2379 1.074405 TGGCAGATATCCAAGGGCATC 59.926 52.381 0.00 0.00 0.00 3.91
2294 2380 1.074405 GGCAGATATCCAAGGGCATCA 59.926 52.381 0.00 0.00 0.00 3.07
2295 2381 2.157738 GCAGATATCCAAGGGCATCAC 58.842 52.381 0.00 0.00 0.00 3.06
2296 2382 2.487805 GCAGATATCCAAGGGCATCACA 60.488 50.000 0.00 0.00 0.00 3.58
2297 2383 3.813240 GCAGATATCCAAGGGCATCACAT 60.813 47.826 0.00 0.00 0.00 3.21
2298 2384 4.404640 CAGATATCCAAGGGCATCACATT 58.595 43.478 0.00 0.00 0.00 2.71
2299 2385 4.831155 CAGATATCCAAGGGCATCACATTT 59.169 41.667 0.00 0.00 0.00 2.32
2300 2386 4.831155 AGATATCCAAGGGCATCACATTTG 59.169 41.667 0.00 0.00 0.00 2.32
2301 2387 0.896923 TCCAAGGGCATCACATTTGC 59.103 50.000 0.00 0.00 39.41 3.68
2302 2388 0.899720 CCAAGGGCATCACATTTGCT 59.100 50.000 0.00 0.00 40.03 3.91
2303 2389 1.404986 CCAAGGGCATCACATTTGCTG 60.405 52.381 0.00 0.00 40.03 4.41
2304 2390 1.274167 CAAGGGCATCACATTTGCTGT 59.726 47.619 0.00 0.00 40.03 4.40
2305 2391 1.180029 AGGGCATCACATTTGCTGTC 58.820 50.000 0.00 0.00 40.03 3.51
2306 2392 1.180029 GGGCATCACATTTGCTGTCT 58.820 50.000 0.00 0.00 40.03 3.41
2307 2393 2.025981 AGGGCATCACATTTGCTGTCTA 60.026 45.455 0.00 0.00 40.03 2.59
2308 2394 2.954318 GGGCATCACATTTGCTGTCTAT 59.046 45.455 0.00 0.00 40.03 1.98
2309 2395 3.382546 GGGCATCACATTTGCTGTCTATT 59.617 43.478 0.00 0.00 40.03 1.73
2310 2396 4.142093 GGGCATCACATTTGCTGTCTATTT 60.142 41.667 0.00 0.00 40.03 1.40
2311 2397 5.413499 GGCATCACATTTGCTGTCTATTTT 58.587 37.500 0.00 0.00 40.03 1.82
2312 2398 5.517770 GGCATCACATTTGCTGTCTATTTTC 59.482 40.000 0.00 0.00 40.03 2.29
2313 2399 6.094719 GCATCACATTTGCTGTCTATTTTCA 58.905 36.000 0.00 0.00 35.29 2.69
2314 2400 6.755141 GCATCACATTTGCTGTCTATTTTCAT 59.245 34.615 0.00 0.00 35.29 2.57
2315 2401 7.277098 GCATCACATTTGCTGTCTATTTTCATT 59.723 33.333 0.00 0.00 35.29 2.57
2316 2402 9.791820 CATCACATTTGCTGTCTATTTTCATTA 57.208 29.630 0.00 0.00 35.29 1.90
2349 2435 8.786826 AGATTGATTATGAACAAGTTAACCGA 57.213 30.769 0.88 0.00 0.00 4.69
2350 2436 9.226606 AGATTGATTATGAACAAGTTAACCGAA 57.773 29.630 0.88 0.00 0.00 4.30
2351 2437 9.834628 GATTGATTATGAACAAGTTAACCGAAA 57.165 29.630 0.88 0.00 0.00 3.46
2352 2438 9.620660 ATTGATTATGAACAAGTTAACCGAAAC 57.379 29.630 0.88 0.00 0.00 2.78
2353 2439 8.155821 TGATTATGAACAAGTTAACCGAAACA 57.844 30.769 0.88 0.00 0.00 2.83
2354 2440 8.788806 TGATTATGAACAAGTTAACCGAAACAT 58.211 29.630 0.88 6.26 0.00 2.71
2359 2445 9.974980 ATGAACAAGTTAACCGAAACATAATTT 57.025 25.926 0.88 0.00 0.00 1.82
2362 2448 8.959734 ACAAGTTAACCGAAACATAATTTAGC 57.040 30.769 0.88 0.00 0.00 3.09
2363 2449 8.569641 ACAAGTTAACCGAAACATAATTTAGCA 58.430 29.630 0.88 0.00 0.00 3.49
2364 2450 9.567848 CAAGTTAACCGAAACATAATTTAGCAT 57.432 29.630 0.88 0.00 0.00 3.79
2365 2451 9.783256 AAGTTAACCGAAACATAATTTAGCATC 57.217 29.630 0.88 0.00 0.00 3.91
2366 2452 8.403236 AGTTAACCGAAACATAATTTAGCATCC 58.597 33.333 0.88 0.00 0.00 3.51
2367 2453 6.767524 AACCGAAACATAATTTAGCATCCA 57.232 33.333 0.00 0.00 0.00 3.41
2368 2454 6.959639 ACCGAAACATAATTTAGCATCCAT 57.040 33.333 0.00 0.00 0.00 3.41
2369 2455 8.458573 AACCGAAACATAATTTAGCATCCATA 57.541 30.769 0.00 0.00 0.00 2.74
2370 2456 8.458573 ACCGAAACATAATTTAGCATCCATAA 57.541 30.769 0.00 0.00 0.00 1.90
2371 2457 8.908903 ACCGAAACATAATTTAGCATCCATAAA 58.091 29.630 0.00 0.00 0.00 1.40
2372 2458 9.743057 CCGAAACATAATTTAGCATCCATAAAA 57.257 29.630 0.00 0.00 0.00 1.52
2381 2467 9.807649 AATTTAGCATCCATAAAATGAGTTGAC 57.192 29.630 0.00 0.00 0.00 3.18
2382 2468 8.579850 TTTAGCATCCATAAAATGAGTTGACT 57.420 30.769 0.00 0.00 0.00 3.41
2383 2469 9.679661 TTTAGCATCCATAAAATGAGTTGACTA 57.320 29.630 0.00 0.00 0.00 2.59
2384 2470 9.851686 TTAGCATCCATAAAATGAGTTGACTAT 57.148 29.630 0.00 0.00 0.00 2.12
2386 2472 9.499479 AGCATCCATAAAATGAGTTGACTATAG 57.501 33.333 0.00 0.00 0.00 1.31
2387 2473 9.277783 GCATCCATAAAATGAGTTGACTATAGT 57.722 33.333 4.68 4.68 0.00 2.12
2408 2494 6.877611 AGTTATTTATCCTAAACCATGCCG 57.122 37.500 0.00 0.00 0.00 5.69
2409 2495 5.240844 AGTTATTTATCCTAAACCATGCCGC 59.759 40.000 0.00 0.00 0.00 6.53
2410 2496 3.290948 TTTATCCTAAACCATGCCGCT 57.709 42.857 0.00 0.00 0.00 5.52
2411 2497 2.254546 TATCCTAAACCATGCCGCTG 57.745 50.000 0.00 0.00 0.00 5.18
2412 2498 1.103398 ATCCTAAACCATGCCGCTGC 61.103 55.000 0.00 0.00 38.26 5.25
2421 2507 2.740438 TGCCGCTGCAACAGTAGA 59.260 55.556 0.00 0.00 46.66 2.59
2422 2508 1.374631 TGCCGCTGCAACAGTAGAG 60.375 57.895 0.00 0.00 46.66 2.43
2423 2509 2.744768 GCCGCTGCAACAGTAGAGC 61.745 63.158 0.00 0.00 37.47 4.09
2424 2510 2.103042 CCGCTGCAACAGTAGAGCC 61.103 63.158 0.00 0.00 33.43 4.70
2425 2511 2.447887 CGCTGCAACAGTAGAGCCG 61.448 63.158 0.00 0.00 33.43 5.52
2426 2512 2.744768 GCTGCAACAGTAGAGCCGC 61.745 63.158 0.00 0.00 33.43 6.53
2427 2513 2.047274 TGCAACAGTAGAGCCGCC 60.047 61.111 0.00 0.00 0.00 6.13
2428 2514 2.820037 GCAACAGTAGAGCCGCCC 60.820 66.667 0.00 0.00 0.00 6.13
2429 2515 2.982130 CAACAGTAGAGCCGCCCT 59.018 61.111 0.00 0.00 0.00 5.19
2430 2516 1.448540 CAACAGTAGAGCCGCCCTG 60.449 63.158 0.00 0.00 0.00 4.45
2431 2517 3.316573 AACAGTAGAGCCGCCCTGC 62.317 63.158 0.00 0.00 0.00 4.85
2432 2518 3.465403 CAGTAGAGCCGCCCTGCT 61.465 66.667 0.00 0.00 46.37 4.24
2440 2526 2.436646 CCGCCCTGCTCAACGAAT 60.437 61.111 0.00 0.00 0.00 3.34
2441 2527 2.753966 CCGCCCTGCTCAACGAATG 61.754 63.158 0.00 0.00 0.00 2.67
2442 2528 2.486966 GCCCTGCTCAACGAATGC 59.513 61.111 0.00 0.00 0.00 3.56
2443 2529 2.334946 GCCCTGCTCAACGAATGCA 61.335 57.895 0.00 0.00 35.30 3.96
2444 2530 1.503542 CCCTGCTCAACGAATGCAC 59.496 57.895 0.00 0.00 32.91 4.57
2445 2531 1.133253 CCTGCTCAACGAATGCACG 59.867 57.895 0.00 0.00 39.31 5.34
2446 2532 1.510623 CTGCTCAACGAATGCACGC 60.511 57.895 0.00 0.00 36.70 5.34
2447 2533 2.202349 GCTCAACGAATGCACGCC 60.202 61.111 0.00 0.00 36.70 5.68
2448 2534 2.965147 GCTCAACGAATGCACGCCA 61.965 57.895 0.00 0.00 36.70 5.69
2449 2535 1.133253 CTCAACGAATGCACGCCAG 59.867 57.895 0.00 0.00 36.70 4.85
2450 2536 2.502510 CAACGAATGCACGCCAGC 60.503 61.111 0.00 0.00 36.70 4.85
2451 2537 3.737172 AACGAATGCACGCCAGCC 61.737 61.111 0.00 0.00 36.70 4.85
2453 2539 4.170062 CGAATGCACGCCAGCCAG 62.170 66.667 0.00 0.00 0.00 4.85
2454 2540 3.058160 GAATGCACGCCAGCCAGT 61.058 61.111 0.00 0.00 0.00 4.00
2455 2541 2.598394 AATGCACGCCAGCCAGTT 60.598 55.556 0.00 0.00 0.00 3.16
2456 2542 2.146073 GAATGCACGCCAGCCAGTTT 62.146 55.000 0.00 0.00 0.00 2.66
2457 2543 1.747325 AATGCACGCCAGCCAGTTTT 61.747 50.000 0.00 0.00 0.00 2.43
2458 2544 1.747325 ATGCACGCCAGCCAGTTTTT 61.747 50.000 0.00 0.00 0.00 1.94
2476 2562 3.469008 TTTTGCTTCCGTCTTCTCTCA 57.531 42.857 0.00 0.00 0.00 3.27
2477 2563 2.440539 TTGCTTCCGTCTTCTCTCAC 57.559 50.000 0.00 0.00 0.00 3.51
2478 2564 1.328279 TGCTTCCGTCTTCTCTCACA 58.672 50.000 0.00 0.00 0.00 3.58
2479 2565 1.895798 TGCTTCCGTCTTCTCTCACAT 59.104 47.619 0.00 0.00 0.00 3.21
2480 2566 2.266554 GCTTCCGTCTTCTCTCACATG 58.733 52.381 0.00 0.00 0.00 3.21
2481 2567 2.266554 CTTCCGTCTTCTCTCACATGC 58.733 52.381 0.00 0.00 0.00 4.06
2482 2568 1.256812 TCCGTCTTCTCTCACATGCA 58.743 50.000 0.00 0.00 0.00 3.96
2483 2569 1.067565 TCCGTCTTCTCTCACATGCAC 60.068 52.381 0.00 0.00 0.00 4.57
2484 2570 1.337167 CCGTCTTCTCTCACATGCACA 60.337 52.381 0.00 0.00 0.00 4.57
2485 2571 2.407090 CGTCTTCTCTCACATGCACAA 58.593 47.619 0.00 0.00 0.00 3.33
2486 2572 2.156504 CGTCTTCTCTCACATGCACAAC 59.843 50.000 0.00 0.00 0.00 3.32
2487 2573 3.133691 GTCTTCTCTCACATGCACAACA 58.866 45.455 0.00 0.00 0.00 3.33
2488 2574 3.750130 GTCTTCTCTCACATGCACAACAT 59.250 43.478 0.00 0.00 40.66 2.71
2507 2593 3.994729 GCGCATGCACAATAGTCAA 57.005 47.368 19.57 0.00 42.15 3.18
2508 2594 2.480224 GCGCATGCACAATAGTCAAT 57.520 45.000 19.57 0.00 42.15 2.57
2509 2595 2.378806 GCGCATGCACAATAGTCAATC 58.621 47.619 19.57 0.00 42.15 2.67
2510 2596 2.855953 GCGCATGCACAATAGTCAATCC 60.856 50.000 19.57 0.00 42.15 3.01
2511 2597 2.355444 CGCATGCACAATAGTCAATCCA 59.645 45.455 19.57 0.00 0.00 3.41
2512 2598 3.699067 GCATGCACAATAGTCAATCCAC 58.301 45.455 14.21 0.00 0.00 4.02
2513 2599 3.379372 GCATGCACAATAGTCAATCCACT 59.621 43.478 14.21 0.00 0.00 4.00
2514 2600 4.142315 GCATGCACAATAGTCAATCCACTT 60.142 41.667 14.21 0.00 0.00 3.16
2515 2601 5.622914 GCATGCACAATAGTCAATCCACTTT 60.623 40.000 14.21 0.00 0.00 2.66
2516 2602 6.392354 CATGCACAATAGTCAATCCACTTTT 58.608 36.000 0.00 0.00 0.00 2.27
2517 2603 7.537715 CATGCACAATAGTCAATCCACTTTTA 58.462 34.615 0.00 0.00 0.00 1.52
2518 2604 7.144722 TGCACAATAGTCAATCCACTTTTAG 57.855 36.000 0.00 0.00 0.00 1.85
2519 2605 6.714810 TGCACAATAGTCAATCCACTTTTAGT 59.285 34.615 0.00 0.00 0.00 2.24
2520 2606 7.230510 TGCACAATAGTCAATCCACTTTTAGTT 59.769 33.333 0.00 0.00 0.00 2.24
2521 2607 7.538678 GCACAATAGTCAATCCACTTTTAGTTG 59.461 37.037 0.00 0.00 0.00 3.16
2522 2608 7.538678 CACAATAGTCAATCCACTTTTAGTTGC 59.461 37.037 0.00 0.00 0.00 4.17
2523 2609 7.230510 ACAATAGTCAATCCACTTTTAGTTGCA 59.769 33.333 0.00 0.00 0.00 4.08
2524 2610 7.944729 ATAGTCAATCCACTTTTAGTTGCAT 57.055 32.000 0.00 0.00 0.00 3.96
2525 2611 6.655078 AGTCAATCCACTTTTAGTTGCATT 57.345 33.333 0.00 0.00 0.00 3.56
2526 2612 7.054491 AGTCAATCCACTTTTAGTTGCATTT 57.946 32.000 0.00 0.00 0.00 2.32
2527 2613 7.500141 AGTCAATCCACTTTTAGTTGCATTTT 58.500 30.769 0.00 0.00 0.00 1.82
2528 2614 7.986889 AGTCAATCCACTTTTAGTTGCATTTTT 59.013 29.630 0.00 0.00 0.00 1.94
2529 2615 9.255304 GTCAATCCACTTTTAGTTGCATTTTTA 57.745 29.630 0.00 0.00 0.00 1.52
2530 2616 9.995003 TCAATCCACTTTTAGTTGCATTTTTAT 57.005 25.926 0.00 0.00 0.00 1.40
2533 2619 9.777297 ATCCACTTTTAGTTGCATTTTTATTGT 57.223 25.926 0.00 0.00 0.00 2.71
2542 2628 8.940768 AGTTGCATTTTTATTGTACACAGTTT 57.059 26.923 0.00 0.00 0.00 2.66
2543 2629 9.030301 AGTTGCATTTTTATTGTACACAGTTTC 57.970 29.630 0.00 0.00 0.00 2.78
2544 2630 8.812329 GTTGCATTTTTATTGTACACAGTTTCA 58.188 29.630 0.00 0.00 0.00 2.69
2545 2631 9.539825 TTGCATTTTTATTGTACACAGTTTCAT 57.460 25.926 0.00 0.00 0.00 2.57
2546 2632 9.539825 TGCATTTTTATTGTACACAGTTTCATT 57.460 25.926 0.00 0.00 0.00 2.57
2552 2638 8.789881 TTATTGTACACAGTTTCATTTTTCCG 57.210 30.769 0.00 0.00 0.00 4.30
2553 2639 5.821516 TGTACACAGTTTCATTTTTCCGT 57.178 34.783 0.00 0.00 0.00 4.69
2554 2640 6.197364 TGTACACAGTTTCATTTTTCCGTT 57.803 33.333 0.00 0.00 0.00 4.44
2555 2641 7.317842 TGTACACAGTTTCATTTTTCCGTTA 57.682 32.000 0.00 0.00 0.00 3.18
2556 2642 7.932335 TGTACACAGTTTCATTTTTCCGTTAT 58.068 30.769 0.00 0.00 0.00 1.89
2557 2643 7.858382 TGTACACAGTTTCATTTTTCCGTTATG 59.142 33.333 0.00 0.00 0.00 1.90
2558 2644 5.689961 ACACAGTTTCATTTTTCCGTTATGC 59.310 36.000 0.00 0.00 0.00 3.14
2559 2645 5.689514 CACAGTTTCATTTTTCCGTTATGCA 59.310 36.000 0.00 0.00 0.00 3.96
2560 2646 5.689961 ACAGTTTCATTTTTCCGTTATGCAC 59.310 36.000 0.00 0.00 0.00 4.57
2561 2647 5.920273 CAGTTTCATTTTTCCGTTATGCACT 59.080 36.000 0.00 0.00 0.00 4.40
2562 2648 6.088085 CAGTTTCATTTTTCCGTTATGCACTC 59.912 38.462 0.00 0.00 0.00 3.51
2563 2649 5.697473 TTCATTTTTCCGTTATGCACTCA 57.303 34.783 0.00 0.00 0.00 3.41
2564 2650 5.697473 TCATTTTTCCGTTATGCACTCAA 57.303 34.783 0.00 0.00 0.00 3.02
2565 2651 5.698832 TCATTTTTCCGTTATGCACTCAAG 58.301 37.500 0.00 0.00 0.00 3.02
2566 2652 3.552604 TTTTCCGTTATGCACTCAAGC 57.447 42.857 0.00 0.00 0.00 4.01
2567 2653 1.448985 TTCCGTTATGCACTCAAGCC 58.551 50.000 0.00 0.00 0.00 4.35
2568 2654 0.323302 TCCGTTATGCACTCAAGCCA 59.677 50.000 0.00 0.00 0.00 4.75
2569 2655 0.447801 CCGTTATGCACTCAAGCCAC 59.552 55.000 0.00 0.00 0.00 5.01
2570 2656 1.155889 CGTTATGCACTCAAGCCACA 58.844 50.000 0.00 0.00 0.00 4.17
2571 2657 1.739466 CGTTATGCACTCAAGCCACAT 59.261 47.619 0.00 0.00 0.00 3.21
2572 2658 2.935849 CGTTATGCACTCAAGCCACATA 59.064 45.455 0.00 0.00 0.00 2.29
2573 2659 3.561310 CGTTATGCACTCAAGCCACATAT 59.439 43.478 0.00 0.00 0.00 1.78
2574 2660 4.035558 CGTTATGCACTCAAGCCACATATT 59.964 41.667 0.00 0.00 0.00 1.28
2575 2661 5.449041 CGTTATGCACTCAAGCCACATATTT 60.449 40.000 0.00 0.00 0.00 1.40
2576 2662 6.238347 CGTTATGCACTCAAGCCACATATTTA 60.238 38.462 0.00 0.00 0.00 1.40
2577 2663 7.479980 GTTATGCACTCAAGCCACATATTTAA 58.520 34.615 0.00 0.00 0.00 1.52
2578 2664 6.720112 ATGCACTCAAGCCACATATTTAAT 57.280 33.333 0.00 0.00 0.00 1.40
2579 2665 6.135290 TGCACTCAAGCCACATATTTAATC 57.865 37.500 0.00 0.00 0.00 1.75
2580 2666 5.651576 TGCACTCAAGCCACATATTTAATCA 59.348 36.000 0.00 0.00 0.00 2.57
2581 2667 6.152492 TGCACTCAAGCCACATATTTAATCAA 59.848 34.615 0.00 0.00 0.00 2.57
2582 2668 6.473455 GCACTCAAGCCACATATTTAATCAAC 59.527 38.462 0.00 0.00 0.00 3.18
2583 2669 7.629222 GCACTCAAGCCACATATTTAATCAACT 60.629 37.037 0.00 0.00 0.00 3.16
2584 2670 7.912250 CACTCAAGCCACATATTTAATCAACTC 59.088 37.037 0.00 0.00 0.00 3.01
2585 2671 7.015226 TCAAGCCACATATTTAATCAACTCG 57.985 36.000 0.00 0.00 0.00 4.18
2586 2672 6.038161 TCAAGCCACATATTTAATCAACTCGG 59.962 38.462 0.00 0.00 0.00 4.63
2587 2673 4.275936 AGCCACATATTTAATCAACTCGGC 59.724 41.667 0.00 0.00 34.85 5.54
2588 2674 4.036262 GCCACATATTTAATCAACTCGGCA 59.964 41.667 0.00 0.00 34.77 5.69
2589 2675 5.751680 CCACATATTTAATCAACTCGGCAG 58.248 41.667 0.00 0.00 0.00 4.85
2590 2676 5.207768 CACATATTTAATCAACTCGGCAGC 58.792 41.667 0.00 0.00 0.00 5.25
2591 2677 4.881273 ACATATTTAATCAACTCGGCAGCA 59.119 37.500 0.00 0.00 0.00 4.41
2592 2678 5.532406 ACATATTTAATCAACTCGGCAGCAT 59.468 36.000 0.00 0.00 0.00 3.79
2593 2679 4.558538 ATTTAATCAACTCGGCAGCATC 57.441 40.909 0.00 0.00 0.00 3.91
2594 2680 1.953559 TAATCAACTCGGCAGCATCC 58.046 50.000 0.00 0.00 0.00 3.51
2595 2681 0.749454 AATCAACTCGGCAGCATCCC 60.749 55.000 0.00 0.00 0.00 3.85
2596 2682 1.913951 ATCAACTCGGCAGCATCCCA 61.914 55.000 0.00 0.00 0.00 4.37
2597 2683 2.110967 CAACTCGGCAGCATCCCAG 61.111 63.158 0.00 0.00 0.00 4.45
2598 2684 2.596851 AACTCGGCAGCATCCCAGT 61.597 57.895 0.00 0.00 0.00 4.00
2599 2685 1.264749 AACTCGGCAGCATCCCAGTA 61.265 55.000 0.00 0.00 0.00 2.74
2600 2686 1.227380 CTCGGCAGCATCCCAGTAC 60.227 63.158 0.00 0.00 0.00 2.73
2601 2687 1.960040 CTCGGCAGCATCCCAGTACA 61.960 60.000 0.00 0.00 0.00 2.90
2602 2688 1.522355 CGGCAGCATCCCAGTACAG 60.522 63.158 0.00 0.00 0.00 2.74
2603 2689 1.604378 GGCAGCATCCCAGTACAGT 59.396 57.895 0.00 0.00 0.00 3.55
2604 2690 0.830648 GGCAGCATCCCAGTACAGTA 59.169 55.000 0.00 0.00 0.00 2.74
2605 2691 1.473434 GGCAGCATCCCAGTACAGTAC 60.473 57.143 2.05 2.05 0.00 2.73
2606 2692 1.473434 GCAGCATCCCAGTACAGTACC 60.473 57.143 7.13 0.00 0.00 3.34
2607 2693 1.831106 CAGCATCCCAGTACAGTACCA 59.169 52.381 7.13 0.00 0.00 3.25
2608 2694 1.831736 AGCATCCCAGTACAGTACCAC 59.168 52.381 7.13 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.383527 CCGTTTGCTGCGAGACCTC 61.384 63.158 0.00 0.00 0.00 3.85
8 9 2.357517 CCGTTTGCTGCGAGACCT 60.358 61.111 0.00 0.00 0.00 3.85
9 10 1.959226 TTCCGTTTGCTGCGAGACC 60.959 57.895 0.00 0.00 0.00 3.85
10 11 1.204312 GTTCCGTTTGCTGCGAGAC 59.796 57.895 0.00 0.00 0.00 3.36
11 12 2.307309 CGTTCCGTTTGCTGCGAGA 61.307 57.895 0.00 0.00 0.00 4.04
12 13 2.170985 CGTTCCGTTTGCTGCGAG 59.829 61.111 0.00 0.00 0.00 5.03
13 14 3.342627 CCGTTCCGTTTGCTGCGA 61.343 61.111 0.00 0.00 0.00 5.10
14 15 4.383602 CCCGTTCCGTTTGCTGCG 62.384 66.667 0.00 0.00 0.00 5.18
15 16 4.038080 CCCCGTTCCGTTTGCTGC 62.038 66.667 0.00 0.00 0.00 5.25
16 17 2.281208 TCCCCGTTCCGTTTGCTG 60.281 61.111 0.00 0.00 0.00 4.41
17 18 2.032071 CTCCCCGTTCCGTTTGCT 59.968 61.111 0.00 0.00 0.00 3.91
18 19 3.053896 CCTCCCCGTTCCGTTTGC 61.054 66.667 0.00 0.00 0.00 3.68
19 20 1.375523 CTCCTCCCCGTTCCGTTTG 60.376 63.158 0.00 0.00 0.00 2.93
20 21 1.534717 TCTCCTCCCCGTTCCGTTT 60.535 57.895 0.00 0.00 0.00 3.60
21 22 2.118951 TCTCCTCCCCGTTCCGTT 59.881 61.111 0.00 0.00 0.00 4.44
22 23 1.856539 TAGTCTCCTCCCCGTTCCGT 61.857 60.000 0.00 0.00 0.00 4.69
23 24 0.467659 ATAGTCTCCTCCCCGTTCCG 60.468 60.000 0.00 0.00 0.00 4.30
24 25 1.041437 CATAGTCTCCTCCCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
25 26 1.682323 GTCATAGTCTCCTCCCCGTTC 59.318 57.143 0.00 0.00 0.00 3.95
26 27 1.006758 TGTCATAGTCTCCTCCCCGTT 59.993 52.381 0.00 0.00 0.00 4.44
27 28 0.629596 TGTCATAGTCTCCTCCCCGT 59.370 55.000 0.00 0.00 0.00 5.28
28 29 1.033574 GTGTCATAGTCTCCTCCCCG 58.966 60.000 0.00 0.00 0.00 5.73
29 30 2.091555 AGAGTGTCATAGTCTCCTCCCC 60.092 54.545 0.00 0.00 33.76 4.81
30 31 2.955660 CAGAGTGTCATAGTCTCCTCCC 59.044 54.545 0.00 0.00 36.95 4.30
31 32 3.380004 CACAGAGTGTCATAGTCTCCTCC 59.620 52.174 0.00 0.00 36.95 4.30
32 33 4.095782 GTCACAGAGTGTCATAGTCTCCTC 59.904 50.000 0.00 0.00 36.95 3.71
33 34 4.013728 GTCACAGAGTGTCATAGTCTCCT 58.986 47.826 0.00 0.00 36.95 3.69
34 35 4.013728 AGTCACAGAGTGTCATAGTCTCC 58.986 47.826 0.00 0.00 36.95 3.71
35 36 4.457603 ACAGTCACAGAGTGTCATAGTCTC 59.542 45.833 1.79 0.00 41.73 3.36
36 37 4.217334 CACAGTCACAGAGTGTCATAGTCT 59.783 45.833 4.59 0.00 43.37 3.24
37 38 4.216472 TCACAGTCACAGAGTGTCATAGTC 59.784 45.833 4.59 0.00 43.37 2.59
38 39 4.145052 TCACAGTCACAGAGTGTCATAGT 58.855 43.478 4.59 0.00 43.37 2.12
39 40 4.217334 ACTCACAGTCACAGAGTGTCATAG 59.783 45.833 4.59 5.95 43.37 2.23
40 41 4.145052 ACTCACAGTCACAGAGTGTCATA 58.855 43.478 4.59 0.00 43.37 2.15
41 42 2.961741 ACTCACAGTCACAGAGTGTCAT 59.038 45.455 4.59 0.00 43.37 3.06
46 47 2.560542 GGATCACTCACAGTCACAGAGT 59.439 50.000 0.00 0.00 42.97 3.24
56 57 0.331616 TCTCCTCGGGATCACTCACA 59.668 55.000 0.00 0.00 0.00 3.58
69 70 2.338500 CGCCTAACACAAACTCTCCTC 58.662 52.381 0.00 0.00 0.00 3.71
70 71 1.002087 CCGCCTAACACAAACTCTCCT 59.998 52.381 0.00 0.00 0.00 3.69
71 72 1.001633 TCCGCCTAACACAAACTCTCC 59.998 52.381 0.00 0.00 0.00 3.71
188 190 1.259507 CGAAGCCAGTCGAACGAAAAA 59.740 47.619 0.00 0.00 43.86 1.94
207 209 2.408704 GTGTGAGAAACGACAGAATCCG 59.591 50.000 0.00 0.00 0.00 4.18
230 238 8.814931 TGTAATTGGATCATGAACCAAGATTTT 58.185 29.630 32.73 25.61 46.95 1.82
231 239 8.253113 GTGTAATTGGATCATGAACCAAGATTT 58.747 33.333 32.73 25.88 46.95 2.17
235 243 6.151648 ACAGTGTAATTGGATCATGAACCAAG 59.848 38.462 32.73 22.68 46.95 3.61
254 262 4.935495 CCTGCGTGGCCACAGTGT 62.935 66.667 34.16 0.00 31.76 3.55
348 358 3.515502 CCTAACCCTTCAGTCTCACATCA 59.484 47.826 0.00 0.00 0.00 3.07
372 382 1.000771 TCCGTCAGGAGCTAGCTGT 60.001 57.895 24.99 6.11 42.75 4.40
398 408 7.111247 AGTTTTATTTGCCTGCTTATATGCA 57.889 32.000 12.30 12.30 41.05 3.96
399 409 7.922811 AGAAGTTTTATTTGCCTGCTTATATGC 59.077 33.333 3.70 3.70 0.00 3.14
404 414 9.681062 ACTATAGAAGTTTTATTTGCCTGCTTA 57.319 29.630 6.78 0.00 33.35 3.09
405 415 8.581253 ACTATAGAAGTTTTATTTGCCTGCTT 57.419 30.769 6.78 0.00 33.35 3.91
406 416 9.681062 TTACTATAGAAGTTTTATTTGCCTGCT 57.319 29.630 6.78 0.00 39.80 4.24
407 417 9.937175 CTTACTATAGAAGTTTTATTTGCCTGC 57.063 33.333 6.78 0.00 39.80 4.85
409 419 9.121658 GCCTTACTATAGAAGTTTTATTTGCCT 57.878 33.333 6.78 0.00 39.80 4.75
410 420 8.068380 CGCCTTACTATAGAAGTTTTATTTGCC 58.932 37.037 6.78 0.00 39.80 4.52
411 421 8.610035 ACGCCTTACTATAGAAGTTTTATTTGC 58.390 33.333 6.78 2.31 39.80 3.68
412 422 9.916397 CACGCCTTACTATAGAAGTTTTATTTG 57.084 33.333 6.78 0.00 39.80 2.32
413 423 9.880157 TCACGCCTTACTATAGAAGTTTTATTT 57.120 29.630 6.78 0.00 39.80 1.40
454 497 0.985490 AGCAAGTCATCCTCCCTCCC 60.985 60.000 0.00 0.00 0.00 4.30
455 498 0.179936 CAGCAAGTCATCCTCCCTCC 59.820 60.000 0.00 0.00 0.00 4.30
456 499 0.908198 ACAGCAAGTCATCCTCCCTC 59.092 55.000 0.00 0.00 0.00 4.30
457 500 0.617413 CACAGCAAGTCATCCTCCCT 59.383 55.000 0.00 0.00 0.00 4.20
495 538 1.376812 GGGTAACGCAGACAAGGGG 60.377 63.158 0.00 0.00 37.60 4.79
504 547 2.357760 GCTTGACCGGGTAACGCA 60.358 61.111 6.32 0.00 42.52 5.24
527 570 1.062587 CAACCAATCATTCGCGACCTC 59.937 52.381 9.15 0.00 0.00 3.85
624 671 2.199208 TGATTGCAAGAGAGGGATGGA 58.801 47.619 4.94 0.00 0.00 3.41
654 701 4.902443 TCGTTATCTGCTTCTAGGACAG 57.098 45.455 0.00 0.00 0.00 3.51
710 757 8.774586 AGAAACAAAACTGACATGTCATACTAC 58.225 33.333 28.00 13.17 39.13 2.73
719 766 7.329226 ACTTGTGAAAGAAACAAAACTGACATG 59.671 33.333 0.00 0.00 37.10 3.21
720 767 7.378181 ACTTGTGAAAGAAACAAAACTGACAT 58.622 30.769 0.00 0.00 37.10 3.06
722 769 8.911247 ATACTTGTGAAAGAAACAAAACTGAC 57.089 30.769 0.00 0.00 37.10 3.51
808 855 4.695396 TGCCGCCTTTTAATTATCGACTA 58.305 39.130 0.00 0.00 0.00 2.59
816 863 3.249917 CGTTCAATGCCGCCTTTTAATT 58.750 40.909 0.00 0.00 0.00 1.40
817 864 2.874849 CGTTCAATGCCGCCTTTTAAT 58.125 42.857 0.00 0.00 0.00 1.40
820 867 1.372872 GCGTTCAATGCCGCCTTTT 60.373 52.632 5.96 0.00 43.96 2.27
838 885 1.872234 CGTACGTGACGCCTCATGG 60.872 63.158 4.25 0.00 46.27 3.66
1029 1083 3.480133 GCACCTCCGGCCAGGTAT 61.480 66.667 14.23 0.00 45.81 2.73
1142 1196 4.421479 AGAACTCGACAGCGGCCG 62.421 66.667 24.05 24.05 38.28 6.13
1143 1197 2.507324 GAGAACTCGACAGCGGCC 60.507 66.667 0.00 0.00 38.28 6.13
1313 1379 0.531532 CTCCTCCGCCATGTCATCAC 60.532 60.000 0.00 0.00 0.00 3.06
1314 1380 0.977627 ACTCCTCCGCCATGTCATCA 60.978 55.000 0.00 0.00 0.00 3.07
1316 1382 0.179000 GAACTCCTCCGCCATGTCAT 59.821 55.000 0.00 0.00 0.00 3.06
1393 1459 4.144703 GAGTTCCCCTCCGTCGGC 62.145 72.222 6.34 0.00 33.79 5.54
1593 1665 2.061773 CGAGCTTAATCCGTGCCTATG 58.938 52.381 0.00 0.00 0.00 2.23
1772 1852 7.581213 TTCGATAGGCAAAAATATCACCAAT 57.419 32.000 0.00 0.00 0.00 3.16
1814 1895 7.993183 CCTTCCTCATACTATCTTGCCTAAAAA 59.007 37.037 0.00 0.00 0.00 1.94
1815 1896 7.509546 CCTTCCTCATACTATCTTGCCTAAAA 58.490 38.462 0.00 0.00 0.00 1.52
1816 1897 6.464465 GCCTTCCTCATACTATCTTGCCTAAA 60.464 42.308 0.00 0.00 0.00 1.85
1817 1898 5.012148 GCCTTCCTCATACTATCTTGCCTAA 59.988 44.000 0.00 0.00 0.00 2.69
1818 1899 4.528596 GCCTTCCTCATACTATCTTGCCTA 59.471 45.833 0.00 0.00 0.00 3.93
1819 1900 3.326297 GCCTTCCTCATACTATCTTGCCT 59.674 47.826 0.00 0.00 0.00 4.75
1820 1901 3.071602 TGCCTTCCTCATACTATCTTGCC 59.928 47.826 0.00 0.00 0.00 4.52
1821 1902 4.342862 TGCCTTCCTCATACTATCTTGC 57.657 45.455 0.00 0.00 0.00 4.01
1822 1903 7.630242 TTTTTGCCTTCCTCATACTATCTTG 57.370 36.000 0.00 0.00 0.00 3.02
1831 1912 8.534496 GCCAATATATATTTTTGCCTTCCTCAT 58.466 33.333 5.18 0.00 0.00 2.90
1832 1913 7.508636 TGCCAATATATATTTTTGCCTTCCTCA 59.491 33.333 5.18 0.00 0.00 3.86
1833 1914 7.895759 TGCCAATATATATTTTTGCCTTCCTC 58.104 34.615 5.18 0.00 0.00 3.71
1834 1915 7.854166 TGCCAATATATATTTTTGCCTTCCT 57.146 32.000 5.18 0.00 0.00 3.36
1835 1916 8.938906 CATTGCCAATATATATTTTTGCCTTCC 58.061 33.333 5.18 0.00 0.00 3.46
1836 1917 9.492973 ACATTGCCAATATATATTTTTGCCTTC 57.507 29.630 5.18 0.00 0.00 3.46
1837 1918 9.275398 CACATTGCCAATATATATTTTTGCCTT 57.725 29.630 5.18 0.00 0.00 4.35
1838 1919 8.649591 TCACATTGCCAATATATATTTTTGCCT 58.350 29.630 5.18 0.00 0.00 4.75
1839 1920 8.830201 TCACATTGCCAATATATATTTTTGCC 57.170 30.769 5.18 0.00 0.00 4.52
1896 1977 2.669569 CACGTGCAACCCAGGAGG 60.670 66.667 0.82 0.00 43.78 4.30
1963 2044 2.046700 GATCGACCGCCAAACCCA 60.047 61.111 0.00 0.00 0.00 4.51
2010 2096 0.102120 GTCGTCTCTGCTCATCAGGG 59.898 60.000 0.00 0.00 44.86 4.45
2059 2145 3.365265 CCCTGGCAGTTCGTTGGC 61.365 66.667 14.43 4.49 43.38 4.52
2060 2146 3.365265 GCCCTGGCAGTTCGTTGG 61.365 66.667 14.43 7.30 41.49 3.77
2070 2156 0.888285 GTGATCAGCTATGCCCTGGC 60.888 60.000 0.00 0.00 42.35 4.85
2071 2157 0.763652 AGTGATCAGCTATGCCCTGG 59.236 55.000 0.00 0.00 0.00 4.45
2072 2158 2.634815 AAGTGATCAGCTATGCCCTG 57.365 50.000 0.00 0.00 0.00 4.45
2073 2159 2.636893 CCTAAGTGATCAGCTATGCCCT 59.363 50.000 0.00 0.00 0.00 5.19
2074 2160 2.873649 GCCTAAGTGATCAGCTATGCCC 60.874 54.545 0.00 0.00 0.00 5.36
2075 2161 2.224378 TGCCTAAGTGATCAGCTATGCC 60.224 50.000 0.00 0.00 0.00 4.40
2076 2162 3.117491 TGCCTAAGTGATCAGCTATGC 57.883 47.619 0.00 0.12 0.00 3.14
2077 2163 4.891260 TCATGCCTAAGTGATCAGCTATG 58.109 43.478 0.00 3.31 0.00 2.23
2078 2164 4.837298 TCTCATGCCTAAGTGATCAGCTAT 59.163 41.667 0.00 0.00 0.00 2.97
2079 2165 4.218312 TCTCATGCCTAAGTGATCAGCTA 58.782 43.478 0.00 0.00 0.00 3.32
2080 2166 3.036819 TCTCATGCCTAAGTGATCAGCT 58.963 45.455 0.00 0.00 0.00 4.24
2081 2167 3.465742 TCTCATGCCTAAGTGATCAGC 57.534 47.619 0.00 0.00 0.00 4.26
2082 2168 4.809958 CAGTTCTCATGCCTAAGTGATCAG 59.190 45.833 0.00 0.00 0.00 2.90
2083 2169 4.763073 CAGTTCTCATGCCTAAGTGATCA 58.237 43.478 0.00 0.00 0.00 2.92
2084 2170 3.559242 GCAGTTCTCATGCCTAAGTGATC 59.441 47.826 11.33 0.00 37.73 2.92
2085 2171 3.539604 GCAGTTCTCATGCCTAAGTGAT 58.460 45.455 11.33 0.00 37.73 3.06
2086 2172 2.675032 CGCAGTTCTCATGCCTAAGTGA 60.675 50.000 11.33 0.00 40.67 3.41
2087 2173 1.662629 CGCAGTTCTCATGCCTAAGTG 59.337 52.381 0.00 0.00 40.67 3.16
2088 2174 1.550524 TCGCAGTTCTCATGCCTAAGT 59.449 47.619 0.00 0.00 40.67 2.24
2089 2175 2.200067 CTCGCAGTTCTCATGCCTAAG 58.800 52.381 0.00 0.00 40.67 2.18
2090 2176 1.134699 CCTCGCAGTTCTCATGCCTAA 60.135 52.381 0.00 0.00 40.67 2.69
2091 2177 0.461548 CCTCGCAGTTCTCATGCCTA 59.538 55.000 0.00 0.00 40.67 3.93
2092 2178 1.220206 CCTCGCAGTTCTCATGCCT 59.780 57.895 0.00 0.00 40.67 4.75
2093 2179 1.817099 CCCTCGCAGTTCTCATGCC 60.817 63.158 0.00 0.00 40.67 4.40
2094 2180 0.175760 TACCCTCGCAGTTCTCATGC 59.824 55.000 0.00 0.00 40.35 4.06
2095 2181 2.898729 ATACCCTCGCAGTTCTCATG 57.101 50.000 0.00 0.00 0.00 3.07
2096 2182 4.411927 AGATATACCCTCGCAGTTCTCAT 58.588 43.478 0.00 0.00 0.00 2.90
2097 2183 3.833732 AGATATACCCTCGCAGTTCTCA 58.166 45.455 0.00 0.00 0.00 3.27
2098 2184 7.717875 AGATATAGATATACCCTCGCAGTTCTC 59.282 40.741 0.00 0.00 0.00 2.87
2099 2185 7.579105 AGATATAGATATACCCTCGCAGTTCT 58.421 38.462 0.00 0.00 0.00 3.01
2100 2186 7.811117 AGATATAGATATACCCTCGCAGTTC 57.189 40.000 0.00 0.00 0.00 3.01
2101 2187 8.056400 AGAAGATATAGATATACCCTCGCAGTT 58.944 37.037 0.00 0.00 0.00 3.16
2102 2188 7.579105 AGAAGATATAGATATACCCTCGCAGT 58.421 38.462 0.00 0.00 0.00 4.40
2103 2189 8.349245 CAAGAAGATATAGATATACCCTCGCAG 58.651 40.741 0.00 0.00 0.00 5.18
2104 2190 7.285629 CCAAGAAGATATAGATATACCCTCGCA 59.714 40.741 0.00 0.00 0.00 5.10
2105 2191 7.502895 TCCAAGAAGATATAGATATACCCTCGC 59.497 40.741 0.00 0.00 0.00 5.03
2106 2192 8.982091 TCCAAGAAGATATAGATATACCCTCG 57.018 38.462 0.00 0.00 0.00 4.63
2108 2194 9.207868 GCTTCCAAGAAGATATAGATATACCCT 57.792 37.037 8.50 0.00 0.00 4.34
2109 2195 8.425703 GGCTTCCAAGAAGATATAGATATACCC 58.574 40.741 8.50 0.00 0.00 3.69
2110 2196 8.425703 GGGCTTCCAAGAAGATATAGATATACC 58.574 40.741 8.50 0.00 0.00 2.73
2111 2197 8.425703 GGGGCTTCCAAGAAGATATAGATATAC 58.574 40.741 8.50 0.00 35.00 1.47
2112 2198 8.355256 AGGGGCTTCCAAGAAGATATAGATATA 58.645 37.037 8.50 0.00 38.24 0.86
2113 2199 7.202640 AGGGGCTTCCAAGAAGATATAGATAT 58.797 38.462 8.50 0.00 38.24 1.63
2114 2200 6.575411 AGGGGCTTCCAAGAAGATATAGATA 58.425 40.000 8.50 0.00 38.24 1.98
2115 2201 5.419554 AGGGGCTTCCAAGAAGATATAGAT 58.580 41.667 8.50 0.00 38.24 1.98
2116 2202 4.832492 AGGGGCTTCCAAGAAGATATAGA 58.168 43.478 8.50 0.00 38.24 1.98
2117 2203 4.019771 GGAGGGGCTTCCAAGAAGATATAG 60.020 50.000 8.50 0.00 37.20 1.31
2118 2204 3.910627 GGAGGGGCTTCCAAGAAGATATA 59.089 47.826 8.50 0.00 37.20 0.86
2119 2205 2.713708 GGAGGGGCTTCCAAGAAGATAT 59.286 50.000 8.50 0.00 37.20 1.63
2120 2206 2.127708 GGAGGGGCTTCCAAGAAGATA 58.872 52.381 8.50 0.00 37.20 1.98
2121 2207 0.922626 GGAGGGGCTTCCAAGAAGAT 59.077 55.000 8.50 0.00 37.20 2.40
2122 2208 0.178861 AGGAGGGGCTTCCAAGAAGA 60.179 55.000 8.50 0.00 39.84 2.87
2123 2209 0.701147 AAGGAGGGGCTTCCAAGAAG 59.299 55.000 10.44 0.00 39.84 2.85
2124 2210 1.075536 GAAAGGAGGGGCTTCCAAGAA 59.924 52.381 10.44 0.00 39.84 2.52
2125 2211 0.698818 GAAAGGAGGGGCTTCCAAGA 59.301 55.000 10.44 0.00 39.84 3.02
2126 2212 0.678048 CGAAAGGAGGGGCTTCCAAG 60.678 60.000 10.44 0.00 39.84 3.61
2127 2213 1.131303 TCGAAAGGAGGGGCTTCCAA 61.131 55.000 10.44 0.00 39.84 3.53
2128 2214 1.131303 TTCGAAAGGAGGGGCTTCCA 61.131 55.000 0.00 0.00 39.84 3.53
2129 2215 0.677098 GTTCGAAAGGAGGGGCTTCC 60.677 60.000 0.00 1.04 37.52 3.46
2130 2216 0.036306 TGTTCGAAAGGAGGGGCTTC 59.964 55.000 0.00 0.00 0.00 3.86
2131 2217 0.250770 GTGTTCGAAAGGAGGGGCTT 60.251 55.000 0.00 0.00 0.00 4.35
2132 2218 1.375326 GTGTTCGAAAGGAGGGGCT 59.625 57.895 0.00 0.00 0.00 5.19
2133 2219 2.033194 CGTGTTCGAAAGGAGGGGC 61.033 63.158 0.00 0.00 39.71 5.80
2134 2220 0.604578 TACGTGTTCGAAAGGAGGGG 59.395 55.000 0.00 0.00 40.62 4.79
2135 2221 2.443887 TTACGTGTTCGAAAGGAGGG 57.556 50.000 0.00 0.00 40.62 4.30
2136 2222 6.470557 TTTATTTACGTGTTCGAAAGGAGG 57.529 37.500 0.00 0.00 40.62 4.30
2137 2223 7.570161 AGTTTTATTTACGTGTTCGAAAGGAG 58.430 34.615 0.00 0.00 40.62 3.69
2138 2224 7.481275 AGTTTTATTTACGTGTTCGAAAGGA 57.519 32.000 0.00 0.00 40.62 3.36
2139 2225 9.649024 TTAAGTTTTATTTACGTGTTCGAAAGG 57.351 29.630 0.00 0.00 40.62 3.11
2144 2230 9.853921 ACTTCTTAAGTTTTATTTACGTGTTCG 57.146 29.630 0.00 0.00 39.04 3.95
2160 2246 9.562226 AGCCCCATATATATACACTTCTTAAGT 57.438 33.333 1.63 0.00 44.06 2.24
2162 2248 8.989131 GGAGCCCCATATATATACACTTCTTAA 58.011 37.037 0.00 0.00 0.00 1.85
2163 2249 7.287005 CGGAGCCCCATATATATACACTTCTTA 59.713 40.741 0.00 0.00 0.00 2.10
2164 2250 6.098409 CGGAGCCCCATATATATACACTTCTT 59.902 42.308 0.00 0.00 0.00 2.52
2165 2251 5.598830 CGGAGCCCCATATATATACACTTCT 59.401 44.000 0.00 0.00 0.00 2.85
2166 2252 5.844004 CGGAGCCCCATATATATACACTTC 58.156 45.833 0.00 0.00 0.00 3.01
2167 2253 5.871396 CGGAGCCCCATATATATACACTT 57.129 43.478 0.00 0.00 0.00 3.16
2185 2271 3.818787 GCCAACAGCCATGCGGAG 61.819 66.667 0.00 0.00 34.35 4.63
2190 2276 3.672447 TGTGCGCCAACAGCCATG 61.672 61.111 4.18 0.00 38.78 3.66
2191 2277 3.673484 GTGTGCGCCAACAGCCAT 61.673 61.111 4.18 0.00 38.78 4.40
2193 2279 3.211564 ATTGTGTGCGCCAACAGCC 62.212 57.895 4.18 0.00 38.78 4.85
2194 2280 1.730547 GATTGTGTGCGCCAACAGC 60.731 57.895 4.18 2.02 38.52 4.40
2195 2281 1.081242 GGATTGTGTGCGCCAACAG 60.081 57.895 4.18 0.00 0.00 3.16
2196 2282 1.177895 ATGGATTGTGTGCGCCAACA 61.178 50.000 4.18 6.54 33.51 3.33
2197 2283 0.456653 GATGGATTGTGTGCGCCAAC 60.457 55.000 4.18 3.33 33.51 3.77
2198 2284 0.892814 TGATGGATTGTGTGCGCCAA 60.893 50.000 4.18 1.71 33.51 4.52
2199 2285 1.303155 TGATGGATTGTGTGCGCCA 60.303 52.632 4.18 0.00 34.45 5.69
2200 2286 1.026182 TCTGATGGATTGTGTGCGCC 61.026 55.000 4.18 0.00 0.00 6.53
2201 2287 1.019673 ATCTGATGGATTGTGTGCGC 58.980 50.000 0.00 0.00 0.00 6.09
2202 2288 2.282407 TCATCTGATGGATTGTGTGCG 58.718 47.619 17.06 0.00 31.27 5.34
2203 2289 3.943381 TCTTCATCTGATGGATTGTGTGC 59.057 43.478 17.06 0.00 31.27 4.57
2204 2290 4.035324 GCTCTTCATCTGATGGATTGTGTG 59.965 45.833 17.06 0.12 31.27 3.82
2205 2291 4.197750 GCTCTTCATCTGATGGATTGTGT 58.802 43.478 17.06 0.00 31.27 3.72
2206 2292 4.035324 GTGCTCTTCATCTGATGGATTGTG 59.965 45.833 17.06 7.49 31.27 3.33
2207 2293 4.080469 AGTGCTCTTCATCTGATGGATTGT 60.080 41.667 17.06 0.00 31.27 2.71
2208 2294 4.452825 AGTGCTCTTCATCTGATGGATTG 58.547 43.478 17.06 5.98 31.27 2.67
2209 2295 4.774660 AGTGCTCTTCATCTGATGGATT 57.225 40.909 17.06 0.00 31.27 3.01
2210 2296 6.183361 ACAATAGTGCTCTTCATCTGATGGAT 60.183 38.462 17.06 0.00 34.51 3.41
2211 2297 5.129980 ACAATAGTGCTCTTCATCTGATGGA 59.870 40.000 17.06 8.16 0.00 3.41
2212 2298 5.366460 ACAATAGTGCTCTTCATCTGATGG 58.634 41.667 17.06 2.93 0.00 3.51
2213 2299 6.982724 TGTACAATAGTGCTCTTCATCTGATG 59.017 38.462 11.42 11.42 0.00 3.07
2214 2300 7.117285 TGTACAATAGTGCTCTTCATCTGAT 57.883 36.000 0.00 0.00 0.00 2.90
2215 2301 6.530019 TGTACAATAGTGCTCTTCATCTGA 57.470 37.500 0.00 0.00 0.00 3.27
2216 2302 7.783090 ATTGTACAATAGTGCTCTTCATCTG 57.217 36.000 19.51 0.00 0.00 2.90
2220 2306 9.890629 AGAAATATTGTACAATAGTGCTCTTCA 57.109 29.630 24.57 6.75 33.30 3.02
2224 2310 8.279103 GCAGAGAAATATTGTACAATAGTGCTC 58.721 37.037 35.97 35.97 46.61 4.26
2225 2311 7.770433 TGCAGAGAAATATTGTACAATAGTGCT 59.230 33.333 28.46 28.46 39.27 4.40
2226 2312 7.919690 TGCAGAGAAATATTGTACAATAGTGC 58.080 34.615 27.40 24.46 36.79 4.40
2237 2323 8.975439 GCTTGGAAAATATGCAGAGAAATATTG 58.025 33.333 0.00 0.00 31.05 1.90
2238 2324 8.921205 AGCTTGGAAAATATGCAGAGAAATATT 58.079 29.630 0.00 0.00 31.74 1.28
2239 2325 8.358148 CAGCTTGGAAAATATGCAGAGAAATAT 58.642 33.333 0.00 0.00 0.00 1.28
2240 2326 7.201848 CCAGCTTGGAAAATATGCAGAGAAATA 60.202 37.037 0.00 0.00 40.96 1.40
2241 2327 6.406624 CCAGCTTGGAAAATATGCAGAGAAAT 60.407 38.462 0.00 0.00 40.96 2.17
2242 2328 5.105635 CCAGCTTGGAAAATATGCAGAGAAA 60.106 40.000 0.00 0.00 40.96 2.52
2243 2329 4.400251 CCAGCTTGGAAAATATGCAGAGAA 59.600 41.667 0.00 0.00 40.96 2.87
2244 2330 3.949754 CCAGCTTGGAAAATATGCAGAGA 59.050 43.478 0.00 0.00 40.96 3.10
2245 2331 3.949754 TCCAGCTTGGAAAATATGCAGAG 59.050 43.478 2.78 0.00 45.00 3.35
2246 2332 3.966979 TCCAGCTTGGAAAATATGCAGA 58.033 40.909 2.78 0.00 45.00 4.26
2257 2343 1.001764 CCATGTGCTCCAGCTTGGA 60.002 57.895 9.05 5.03 45.98 3.53
2258 2344 2.707849 GCCATGTGCTCCAGCTTGG 61.708 63.158 0.00 5.88 42.66 3.61
2259 2345 1.934220 CTGCCATGTGCTCCAGCTTG 61.934 60.000 0.00 0.00 42.66 4.01
2260 2346 1.677966 CTGCCATGTGCTCCAGCTT 60.678 57.895 0.00 0.00 42.66 3.74
2261 2347 1.923006 ATCTGCCATGTGCTCCAGCT 61.923 55.000 0.00 0.00 42.66 4.24
2262 2348 0.179037 TATCTGCCATGTGCTCCAGC 60.179 55.000 7.54 0.00 42.00 4.85
2263 2349 2.424557 GATATCTGCCATGTGCTCCAG 58.575 52.381 7.54 0.00 42.00 3.86
2264 2350 1.072806 GGATATCTGCCATGTGCTCCA 59.927 52.381 2.05 0.00 42.00 3.86
2265 2351 1.072806 TGGATATCTGCCATGTGCTCC 59.927 52.381 2.05 6.22 42.00 4.70
2266 2352 2.556144 TGGATATCTGCCATGTGCTC 57.444 50.000 2.05 0.00 42.00 4.26
2267 2353 2.488528 CCTTGGATATCTGCCATGTGCT 60.489 50.000 2.05 0.00 42.00 4.40
2268 2354 1.884579 CCTTGGATATCTGCCATGTGC 59.115 52.381 2.05 0.00 41.77 4.57
2269 2355 2.511659 CCCTTGGATATCTGCCATGTG 58.488 52.381 2.05 0.00 34.90 3.21
2270 2356 1.202976 GCCCTTGGATATCTGCCATGT 60.203 52.381 2.05 0.00 34.90 3.21
2271 2357 1.202964 TGCCCTTGGATATCTGCCATG 60.203 52.381 2.05 0.00 34.90 3.66
2272 2358 1.151760 TGCCCTTGGATATCTGCCAT 58.848 50.000 2.05 0.00 34.90 4.40
2273 2359 1.074405 GATGCCCTTGGATATCTGCCA 59.926 52.381 2.05 0.00 0.00 4.92
2274 2360 1.074405 TGATGCCCTTGGATATCTGCC 59.926 52.381 2.05 0.00 0.00 4.85
2275 2361 2.157738 GTGATGCCCTTGGATATCTGC 58.842 52.381 2.05 0.00 0.00 4.26
2276 2362 3.497103 TGTGATGCCCTTGGATATCTG 57.503 47.619 2.05 0.00 0.00 2.90
2277 2363 4.736611 AATGTGATGCCCTTGGATATCT 57.263 40.909 2.05 0.00 0.00 1.98
2278 2364 4.560108 GCAAATGTGATGCCCTTGGATATC 60.560 45.833 0.00 0.00 37.85 1.63
2279 2365 3.322828 GCAAATGTGATGCCCTTGGATAT 59.677 43.478 0.00 0.00 37.85 1.63
2280 2366 2.694628 GCAAATGTGATGCCCTTGGATA 59.305 45.455 0.00 0.00 37.85 2.59
2281 2367 1.483415 GCAAATGTGATGCCCTTGGAT 59.517 47.619 0.00 0.00 37.85 3.41
2282 2368 0.896923 GCAAATGTGATGCCCTTGGA 59.103 50.000 0.00 0.00 37.85 3.53
2283 2369 0.899720 AGCAAATGTGATGCCCTTGG 59.100 50.000 0.00 0.00 44.91 3.61
2284 2370 1.274167 ACAGCAAATGTGATGCCCTTG 59.726 47.619 0.00 0.00 45.32 3.61
2285 2371 1.547372 GACAGCAAATGTGATGCCCTT 59.453 47.619 0.00 0.00 45.32 3.95
2286 2372 1.180029 GACAGCAAATGTGATGCCCT 58.820 50.000 0.00 0.00 45.32 5.19
2287 2373 1.180029 AGACAGCAAATGTGATGCCC 58.820 50.000 0.00 0.00 45.32 5.36
2288 2374 4.644103 AATAGACAGCAAATGTGATGCC 57.356 40.909 0.00 0.00 45.32 4.40
2289 2375 6.094719 TGAAAATAGACAGCAAATGTGATGC 58.905 36.000 0.00 0.00 45.32 3.91
2290 2376 8.697846 AATGAAAATAGACAGCAAATGTGATG 57.302 30.769 0.00 0.00 46.85 3.07
2323 2409 9.878667 TCGGTTAACTTGTTCATAATCAATCTA 57.121 29.630 5.42 0.00 0.00 1.98
2324 2410 8.786826 TCGGTTAACTTGTTCATAATCAATCT 57.213 30.769 5.42 0.00 0.00 2.40
2325 2411 9.834628 TTTCGGTTAACTTGTTCATAATCAATC 57.165 29.630 5.42 0.00 0.00 2.67
2326 2412 9.620660 GTTTCGGTTAACTTGTTCATAATCAAT 57.379 29.630 5.42 0.00 0.00 2.57
2327 2413 8.622157 TGTTTCGGTTAACTTGTTCATAATCAA 58.378 29.630 5.42 0.00 0.00 2.57
2328 2414 8.155821 TGTTTCGGTTAACTTGTTCATAATCA 57.844 30.769 5.42 0.00 0.00 2.57
2333 2419 9.974980 AAATTATGTTTCGGTTAACTTGTTCAT 57.025 25.926 5.42 8.09 0.00 2.57
2336 2422 9.401873 GCTAAATTATGTTTCGGTTAACTTGTT 57.598 29.630 5.42 0.00 0.00 2.83
2337 2423 8.569641 TGCTAAATTATGTTTCGGTTAACTTGT 58.430 29.630 5.42 0.00 0.00 3.16
2338 2424 8.958175 TGCTAAATTATGTTTCGGTTAACTTG 57.042 30.769 5.42 0.00 0.00 3.16
2339 2425 9.783256 GATGCTAAATTATGTTTCGGTTAACTT 57.217 29.630 5.42 0.00 0.00 2.66
2340 2426 8.403236 GGATGCTAAATTATGTTTCGGTTAACT 58.597 33.333 5.42 0.00 0.00 2.24
2341 2427 8.185505 TGGATGCTAAATTATGTTTCGGTTAAC 58.814 33.333 0.00 0.00 0.00 2.01
2342 2428 8.282455 TGGATGCTAAATTATGTTTCGGTTAA 57.718 30.769 0.00 0.00 0.00 2.01
2343 2429 7.867305 TGGATGCTAAATTATGTTTCGGTTA 57.133 32.000 0.00 0.00 0.00 2.85
2344 2430 6.767524 TGGATGCTAAATTATGTTTCGGTT 57.232 33.333 0.00 0.00 0.00 4.44
2345 2431 6.959639 ATGGATGCTAAATTATGTTTCGGT 57.040 33.333 0.00 0.00 0.00 4.69
2346 2432 9.743057 TTTTATGGATGCTAAATTATGTTTCGG 57.257 29.630 0.00 0.00 0.00 4.30
2355 2441 9.807649 GTCAACTCATTTTATGGATGCTAAATT 57.192 29.630 0.00 0.00 0.00 1.82
2356 2442 9.193806 AGTCAACTCATTTTATGGATGCTAAAT 57.806 29.630 0.00 0.00 0.00 1.40
2357 2443 8.579850 AGTCAACTCATTTTATGGATGCTAAA 57.420 30.769 0.00 0.00 0.00 1.85
2358 2444 9.851686 ATAGTCAACTCATTTTATGGATGCTAA 57.148 29.630 0.00 0.00 0.00 3.09
2360 2446 9.499479 CTATAGTCAACTCATTTTATGGATGCT 57.501 33.333 0.00 0.00 0.00 3.79
2361 2447 9.277783 ACTATAGTCAACTCATTTTATGGATGC 57.722 33.333 0.00 0.00 0.00 3.91
2382 2468 9.661563 CGGCATGGTTTAGGATAAATAACTATA 57.338 33.333 0.00 0.00 0.00 1.31
2383 2469 7.120726 GCGGCATGGTTTAGGATAAATAACTAT 59.879 37.037 0.00 0.00 0.00 2.12
2384 2470 6.428771 GCGGCATGGTTTAGGATAAATAACTA 59.571 38.462 0.00 0.00 0.00 2.24
2385 2471 5.240844 GCGGCATGGTTTAGGATAAATAACT 59.759 40.000 0.00 0.00 0.00 2.24
2386 2472 5.240844 AGCGGCATGGTTTAGGATAAATAAC 59.759 40.000 1.45 0.00 0.00 1.89
2387 2473 5.240623 CAGCGGCATGGTTTAGGATAAATAA 59.759 40.000 1.45 0.00 0.00 1.40
2388 2474 4.759693 CAGCGGCATGGTTTAGGATAAATA 59.240 41.667 1.45 0.00 0.00 1.40
2389 2475 3.569701 CAGCGGCATGGTTTAGGATAAAT 59.430 43.478 1.45 0.00 0.00 1.40
2390 2476 2.948979 CAGCGGCATGGTTTAGGATAAA 59.051 45.455 1.45 0.00 0.00 1.40
2391 2477 2.571212 CAGCGGCATGGTTTAGGATAA 58.429 47.619 1.45 0.00 0.00 1.75
2392 2478 1.813862 GCAGCGGCATGGTTTAGGATA 60.814 52.381 3.18 0.00 40.72 2.59
2393 2479 1.103398 GCAGCGGCATGGTTTAGGAT 61.103 55.000 3.18 0.00 40.72 3.24
2394 2480 1.748879 GCAGCGGCATGGTTTAGGA 60.749 57.895 3.18 0.00 40.72 2.94
2395 2481 2.800736 GCAGCGGCATGGTTTAGG 59.199 61.111 3.18 0.00 40.72 2.69
2405 2491 2.744768 GCTCTACTGTTGCAGCGGC 61.745 63.158 9.58 0.31 41.68 6.53
2406 2492 2.103042 GGCTCTACTGTTGCAGCGG 61.103 63.158 7.97 7.97 34.37 5.52
2407 2493 2.447887 CGGCTCTACTGTTGCAGCG 61.448 63.158 0.00 0.00 34.37 5.18
2408 2494 2.744768 GCGGCTCTACTGTTGCAGC 61.745 63.158 0.00 0.00 40.15 5.25
2409 2495 2.103042 GGCGGCTCTACTGTTGCAG 61.103 63.158 0.00 0.00 37.52 4.41
2410 2496 2.047274 GGCGGCTCTACTGTTGCA 60.047 61.111 0.00 0.00 0.00 4.08
2411 2497 2.820037 GGGCGGCTCTACTGTTGC 60.820 66.667 9.56 0.00 0.00 4.17
2412 2498 1.448540 CAGGGCGGCTCTACTGTTG 60.449 63.158 9.56 0.00 0.00 3.33
2413 2499 2.982130 CAGGGCGGCTCTACTGTT 59.018 61.111 9.56 0.00 0.00 3.16
2414 2500 3.775654 GCAGGGCGGCTCTACTGT 61.776 66.667 9.56 0.00 33.62 3.55
2415 2501 3.465403 AGCAGGGCGGCTCTACTG 61.465 66.667 9.56 8.82 41.05 2.74
2423 2509 2.436646 ATTCGTTGAGCAGGGCGG 60.437 61.111 0.00 0.00 0.00 6.13
2424 2510 2.787249 CATTCGTTGAGCAGGGCG 59.213 61.111 0.00 0.00 0.00 6.13
2425 2511 2.334946 TGCATTCGTTGAGCAGGGC 61.335 57.895 0.00 0.00 33.75 5.19
2426 2512 1.503542 GTGCATTCGTTGAGCAGGG 59.496 57.895 0.00 0.00 39.21 4.45
2427 2513 1.133253 CGTGCATTCGTTGAGCAGG 59.867 57.895 0.00 0.00 39.21 4.85
2428 2514 1.510623 GCGTGCATTCGTTGAGCAG 60.511 57.895 0.00 0.00 39.21 4.24
2429 2515 2.555782 GCGTGCATTCGTTGAGCA 59.444 55.556 0.00 0.00 35.63 4.26
2430 2516 2.202349 GGCGTGCATTCGTTGAGC 60.202 61.111 0.00 0.00 0.00 4.26
2431 2517 1.133253 CTGGCGTGCATTCGTTGAG 59.867 57.895 0.00 0.00 0.00 3.02
2432 2518 2.965147 GCTGGCGTGCATTCGTTGA 61.965 57.895 0.00 0.00 0.00 3.18
2433 2519 2.502510 GCTGGCGTGCATTCGTTG 60.503 61.111 0.00 0.00 0.00 4.10
2434 2520 3.737172 GGCTGGCGTGCATTCGTT 61.737 61.111 0.00 0.00 34.04 3.85
2436 2522 4.170062 CTGGCTGGCGTGCATTCG 62.170 66.667 0.00 0.00 34.04 3.34
2437 2523 2.146073 AAACTGGCTGGCGTGCATTC 62.146 55.000 0.00 0.00 34.04 2.67
2438 2524 1.747325 AAAACTGGCTGGCGTGCATT 61.747 50.000 0.00 0.00 34.04 3.56
2439 2525 1.747325 AAAAACTGGCTGGCGTGCAT 61.747 50.000 0.00 0.00 34.04 3.96
2440 2526 2.422231 AAAAACTGGCTGGCGTGCA 61.422 52.632 4.78 0.00 34.04 4.57
2441 2527 2.417097 AAAAACTGGCTGGCGTGC 59.583 55.556 0.00 0.00 0.00 5.34
2455 2541 3.560068 GTGAGAGAAGACGGAAGCAAAAA 59.440 43.478 0.00 0.00 0.00 1.94
2456 2542 3.131396 GTGAGAGAAGACGGAAGCAAAA 58.869 45.455 0.00 0.00 0.00 2.44
2457 2543 2.102420 TGTGAGAGAAGACGGAAGCAAA 59.898 45.455 0.00 0.00 0.00 3.68
2458 2544 1.686587 TGTGAGAGAAGACGGAAGCAA 59.313 47.619 0.00 0.00 0.00 3.91
2459 2545 1.328279 TGTGAGAGAAGACGGAAGCA 58.672 50.000 0.00 0.00 0.00 3.91
2460 2546 2.266554 CATGTGAGAGAAGACGGAAGC 58.733 52.381 0.00 0.00 0.00 3.86
2461 2547 2.266554 GCATGTGAGAGAAGACGGAAG 58.733 52.381 0.00 0.00 0.00 3.46
2462 2548 1.618343 TGCATGTGAGAGAAGACGGAA 59.382 47.619 0.00 0.00 0.00 4.30
2463 2549 1.067565 GTGCATGTGAGAGAAGACGGA 60.068 52.381 0.00 0.00 0.00 4.69
2464 2550 1.337167 TGTGCATGTGAGAGAAGACGG 60.337 52.381 0.00 0.00 0.00 4.79
2465 2551 2.070262 TGTGCATGTGAGAGAAGACG 57.930 50.000 0.00 0.00 0.00 4.18
2466 2552 3.133691 TGTTGTGCATGTGAGAGAAGAC 58.866 45.455 0.00 0.00 0.00 3.01
2467 2553 3.473923 TGTTGTGCATGTGAGAGAAGA 57.526 42.857 0.00 0.00 0.00 2.87
2489 2575 2.378806 GATTGACTATTGTGCATGCGC 58.621 47.619 24.25 24.25 39.24 6.09
2490 2576 2.355444 TGGATTGACTATTGTGCATGCG 59.645 45.455 14.09 0.00 0.00 4.73
2491 2577 3.379372 AGTGGATTGACTATTGTGCATGC 59.621 43.478 11.82 11.82 0.00 4.06
2492 2578 5.571784 AAGTGGATTGACTATTGTGCATG 57.428 39.130 0.00 0.00 0.00 4.06
2493 2579 6.594788 AAAAGTGGATTGACTATTGTGCAT 57.405 33.333 0.00 0.00 0.00 3.96
2494 2580 6.714810 ACTAAAAGTGGATTGACTATTGTGCA 59.285 34.615 0.00 0.00 0.00 4.57
2495 2581 7.145932 ACTAAAAGTGGATTGACTATTGTGC 57.854 36.000 0.00 0.00 0.00 4.57
2496 2582 7.538678 GCAACTAAAAGTGGATTGACTATTGTG 59.461 37.037 0.00 0.00 0.00 3.33
2497 2583 7.230510 TGCAACTAAAAGTGGATTGACTATTGT 59.769 33.333 0.00 0.00 0.00 2.71
2498 2584 7.592938 TGCAACTAAAAGTGGATTGACTATTG 58.407 34.615 0.00 0.00 0.00 1.90
2499 2585 7.759489 TGCAACTAAAAGTGGATTGACTATT 57.241 32.000 0.00 0.00 0.00 1.73
2500 2586 7.944729 ATGCAACTAAAAGTGGATTGACTAT 57.055 32.000 0.00 0.00 0.00 2.12
2501 2587 7.759489 AATGCAACTAAAAGTGGATTGACTA 57.241 32.000 0.00 0.00 0.00 2.59
2502 2588 6.655078 AATGCAACTAAAAGTGGATTGACT 57.345 33.333 0.00 0.00 0.00 3.41
2503 2589 7.713764 AAAATGCAACTAAAAGTGGATTGAC 57.286 32.000 0.00 0.00 0.00 3.18
2504 2590 9.995003 ATAAAAATGCAACTAAAAGTGGATTGA 57.005 25.926 0.00 0.00 0.00 2.57
2507 2593 9.777297 ACAATAAAAATGCAACTAAAAGTGGAT 57.223 25.926 0.00 0.00 0.00 3.41
2517 2603 8.940768 AAACTGTGTACAATAAAAATGCAACT 57.059 26.923 0.00 0.00 0.00 3.16
2518 2604 8.812329 TGAAACTGTGTACAATAAAAATGCAAC 58.188 29.630 0.00 0.00 0.00 4.17
2519 2605 8.932945 TGAAACTGTGTACAATAAAAATGCAA 57.067 26.923 0.00 0.00 0.00 4.08
2520 2606 9.539825 AATGAAACTGTGTACAATAAAAATGCA 57.460 25.926 0.00 0.00 0.00 3.96
2526 2612 9.239002 CGGAAAAATGAAACTGTGTACAATAAA 57.761 29.630 0.00 0.00 0.00 1.40
2527 2613 8.407064 ACGGAAAAATGAAACTGTGTACAATAA 58.593 29.630 0.00 0.00 0.00 1.40
2528 2614 7.932335 ACGGAAAAATGAAACTGTGTACAATA 58.068 30.769 0.00 0.00 0.00 1.90
2529 2615 6.801575 ACGGAAAAATGAAACTGTGTACAAT 58.198 32.000 0.00 0.00 0.00 2.71
2530 2616 6.197364 ACGGAAAAATGAAACTGTGTACAA 57.803 33.333 0.00 0.00 0.00 2.41
2531 2617 5.821516 ACGGAAAAATGAAACTGTGTACA 57.178 34.783 0.00 0.00 0.00 2.90
2532 2618 7.149031 GCATAACGGAAAAATGAAACTGTGTAC 60.149 37.037 0.00 0.00 0.00 2.90
2533 2619 6.858993 GCATAACGGAAAAATGAAACTGTGTA 59.141 34.615 0.00 0.00 0.00 2.90
2534 2620 5.689961 GCATAACGGAAAAATGAAACTGTGT 59.310 36.000 0.00 0.00 0.00 3.72
2535 2621 5.689514 TGCATAACGGAAAAATGAAACTGTG 59.310 36.000 0.00 0.00 0.00 3.66
2536 2622 5.689961 GTGCATAACGGAAAAATGAAACTGT 59.310 36.000 0.00 0.00 0.00 3.55
2537 2623 5.920273 AGTGCATAACGGAAAAATGAAACTG 59.080 36.000 0.00 0.00 0.00 3.16
2538 2624 6.084326 AGTGCATAACGGAAAAATGAAACT 57.916 33.333 0.00 0.00 0.00 2.66
2539 2625 5.918011 TGAGTGCATAACGGAAAAATGAAAC 59.082 36.000 0.00 0.00 0.00 2.78
2540 2626 6.078202 TGAGTGCATAACGGAAAAATGAAA 57.922 33.333 0.00 0.00 0.00 2.69
2541 2627 5.697473 TGAGTGCATAACGGAAAAATGAA 57.303 34.783 0.00 0.00 0.00 2.57
2542 2628 5.697473 TTGAGTGCATAACGGAAAAATGA 57.303 34.783 0.00 0.00 0.00 2.57
2543 2629 4.324402 GCTTGAGTGCATAACGGAAAAATG 59.676 41.667 0.00 0.00 0.00 2.32
2544 2630 4.485163 GCTTGAGTGCATAACGGAAAAAT 58.515 39.130 0.00 0.00 0.00 1.82
2545 2631 3.305064 GGCTTGAGTGCATAACGGAAAAA 60.305 43.478 0.00 0.00 34.04 1.94
2546 2632 2.227865 GGCTTGAGTGCATAACGGAAAA 59.772 45.455 0.00 0.00 34.04 2.29
2547 2633 1.810151 GGCTTGAGTGCATAACGGAAA 59.190 47.619 0.00 0.00 34.04 3.13
2548 2634 1.271108 TGGCTTGAGTGCATAACGGAA 60.271 47.619 0.00 0.00 34.04 4.30
2549 2635 0.323302 TGGCTTGAGTGCATAACGGA 59.677 50.000 0.00 0.00 34.04 4.69
2550 2636 0.447801 GTGGCTTGAGTGCATAACGG 59.552 55.000 0.00 0.00 34.04 4.44
2551 2637 1.155889 TGTGGCTTGAGTGCATAACG 58.844 50.000 0.00 0.00 34.04 3.18
2552 2638 5.505173 AATATGTGGCTTGAGTGCATAAC 57.495 39.130 0.00 0.00 34.04 1.89
2553 2639 7.637631 TTAAATATGTGGCTTGAGTGCATAA 57.362 32.000 0.00 0.00 34.04 1.90
2554 2640 7.501892 TGATTAAATATGTGGCTTGAGTGCATA 59.498 33.333 0.00 0.00 34.04 3.14
2555 2641 6.321945 TGATTAAATATGTGGCTTGAGTGCAT 59.678 34.615 0.00 0.00 34.04 3.96
2556 2642 5.651576 TGATTAAATATGTGGCTTGAGTGCA 59.348 36.000 0.00 0.00 34.04 4.57
2557 2643 6.135290 TGATTAAATATGTGGCTTGAGTGC 57.865 37.500 0.00 0.00 0.00 4.40
2558 2644 7.765307 AGTTGATTAAATATGTGGCTTGAGTG 58.235 34.615 0.00 0.00 0.00 3.51
2559 2645 7.201644 CGAGTTGATTAAATATGTGGCTTGAGT 60.202 37.037 0.00 0.00 0.00 3.41
2560 2646 7.128331 CGAGTTGATTAAATATGTGGCTTGAG 58.872 38.462 0.00 0.00 0.00 3.02
2561 2647 6.038161 CCGAGTTGATTAAATATGTGGCTTGA 59.962 38.462 0.00 0.00 0.00 3.02
2562 2648 6.201517 CCGAGTTGATTAAATATGTGGCTTG 58.798 40.000 0.00 0.00 0.00 4.01
2563 2649 5.221048 GCCGAGTTGATTAAATATGTGGCTT 60.221 40.000 0.00 0.00 34.86 4.35
2564 2650 4.275936 GCCGAGTTGATTAAATATGTGGCT 59.724 41.667 0.00 0.00 34.86 4.75
2565 2651 4.036262 TGCCGAGTTGATTAAATATGTGGC 59.964 41.667 0.00 0.00 38.08 5.01
2566 2652 5.749596 TGCCGAGTTGATTAAATATGTGG 57.250 39.130 0.00 0.00 0.00 4.17
2567 2653 5.207768 GCTGCCGAGTTGATTAAATATGTG 58.792 41.667 0.00 0.00 0.00 3.21
2568 2654 4.881273 TGCTGCCGAGTTGATTAAATATGT 59.119 37.500 0.00 0.00 0.00 2.29
2569 2655 5.422666 TGCTGCCGAGTTGATTAAATATG 57.577 39.130 0.00 0.00 0.00 1.78
2570 2656 5.182001 GGATGCTGCCGAGTTGATTAAATAT 59.818 40.000 0.00 0.00 0.00 1.28
2571 2657 4.515191 GGATGCTGCCGAGTTGATTAAATA 59.485 41.667 0.00 0.00 0.00 1.40
2572 2658 3.316308 GGATGCTGCCGAGTTGATTAAAT 59.684 43.478 0.00 0.00 0.00 1.40
2573 2659 2.682856 GGATGCTGCCGAGTTGATTAAA 59.317 45.455 0.00 0.00 0.00 1.52
2574 2660 2.288666 GGATGCTGCCGAGTTGATTAA 58.711 47.619 0.00 0.00 0.00 1.40
2575 2661 1.475034 GGGATGCTGCCGAGTTGATTA 60.475 52.381 0.00 0.00 0.00 1.75
2576 2662 0.749454 GGGATGCTGCCGAGTTGATT 60.749 55.000 0.00 0.00 0.00 2.57
2577 2663 1.153086 GGGATGCTGCCGAGTTGAT 60.153 57.895 0.00 0.00 0.00 2.57
2578 2664 2.268920 GGGATGCTGCCGAGTTGA 59.731 61.111 0.00 0.00 0.00 3.18
2579 2665 2.046023 TGGGATGCTGCCGAGTTG 60.046 61.111 0.00 0.00 0.00 3.16
2580 2666 1.264749 TACTGGGATGCTGCCGAGTT 61.265 55.000 15.64 4.10 43.38 3.01
2581 2667 1.685765 TACTGGGATGCTGCCGAGT 60.686 57.895 15.01 15.01 46.78 4.18
2582 2668 1.227380 GTACTGGGATGCTGCCGAG 60.227 63.158 0.00 6.03 39.41 4.63
2583 2669 1.960040 CTGTACTGGGATGCTGCCGA 61.960 60.000 0.00 0.00 0.00 5.54
2584 2670 1.522355 CTGTACTGGGATGCTGCCG 60.522 63.158 0.00 0.00 0.00 5.69
2585 2671 0.830648 TACTGTACTGGGATGCTGCC 59.169 55.000 4.66 0.00 0.00 4.85
2586 2672 1.473434 GGTACTGTACTGGGATGCTGC 60.473 57.143 16.79 0.00 0.00 5.25
2587 2673 1.831106 TGGTACTGTACTGGGATGCTG 59.169 52.381 16.79 0.00 0.00 4.41
2588 2674 1.831736 GTGGTACTGTACTGGGATGCT 59.168 52.381 16.79 0.00 0.00 3.79
2589 2675 2.311124 GTGGTACTGTACTGGGATGC 57.689 55.000 16.79 0.26 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.